Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
CSF3R	1441	genome.wustl.edu	36	1	36706021	36706021	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2808-03D-01W-0755-09	TCGA-AB-2808-11D-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	36706021	36706021	G	A	SNP	CSF3R	NM_156039	human	genbank	54_36p	-1	reviewed	missense	c.1853	p.T618I	0.989	superfamily_FN_III-like	PatternScan_HEMATOPO_REC_L_F2,HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like,HMMPfam_Lep_receptor_Ig	-	no_errors
CSMD3	114788	genome.wustl.edu	36	8	113720223	113720223	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2808-03D-01W-0755-09	TCGA-AB-2808-11D-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	113720223	113720223	C	T	SNP	CSMD3	NM_198123	human	genbank	54_36p	-1	validated	missense	c.3404	p.R1135H	1.000	superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042	superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032,PatternScan_GLYCOSYL_HYDROL_F10	-	no_errors
GJA4	2701	genome.wustl.edu	36	1	35033304	35033304	+	Silent	SNP	G	G	A			TCGA-AB-2808-03D-01W-0755-09	TCGA-AB-2808-11D-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	35033304	35033304	G	A	SNP	GJA4	NM_002060	human	genbank	54_36p	+1	reviewed	silent	c.903	p.A301	0.012	NULL	HMMPfam_Connexin,HMMSmart_SM00037,PatternScan_CONNEXINS_1,PatternScan_CONNEXINS_2,HMMPfam_Connexin_CCC	-	no_errors
LAMA3	3909	genome.wustl.edu	36	18	19648425	19648425	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2808-03D-01W-0755-09	TCGA-AB-2808-11D-01W-0755-09	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	18	19648425	19648425	T	C	SNP	LAMA3	NM_198129	human	genbank	54_36p	+1	reviewed	missense	c.1849	p.Y617H	0.977	superfamily_EGF/Laminin,HMMSmart_SM00180,HMMPfam_Laminin_EGF,PatternScan_EGF_LAM_1	HMMSmart_SM00136,HMMPfam_Laminin_N,superfamily_Galactose-binding domain-like,HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin,PatternScan_EGF_1,PatternScan_EGF_LAM_1,HMMSmart_SM00181,HMMSmart_SM00281,HMMPfam_Laminin_B,PatternScan_EGF_2,HMMPfam_Laminin_I,HMMPfam_Laminin_II,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2,PatternScan_CHAPERONINS_CPN60	-	no_errors
FILIP1	27145	genome.wustl.edu	36	6	76079603	76079603	+	Nonsense_Mutation	SNP	G	G	A			TCGA-AB-2808-03D-01W-0755-09	TCGA-AB-2808-11D-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	76079603	76079603	G	A	SNP	FILIP1	NM_015687	human	genbank	54_36p	-1	validated	nonsense	c.2665	p.R889*	0.294	NULL	HMMPfam_CortBP2	-	no_errors
NRAS	4893	genome.wustl.edu	36	1	115060267	115060267	+	Missense_Mutation	SNP	C	C	T	rs121434595		TCGA-AB-2808-03D-01W-0755-09	TCGA-AB-2808-11D-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	115060267	115060267	C	T	SNP	NRAS	NM_002524	human	genbank	54_36p	-1	reviewed	missense	c.38	p.G13D	1.000	HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
CTNNA2	1496	genome.wustl.edu	36	2	79938770	79938770	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2808-03D-01W-0755-09	TCGA-AB-2808-11D-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	79938770	79938770	C	T	SNP	CTNNA2	NM_004389	human	genbank	54_36p	+1	validated	missense	c.422	p.A141V	0.999	HMMPfam_Vinculin,superfamily_alpha-catenin/vinculin	HMMPfam_Vinculin,superfamily_alpha-catenin/vinculin,PatternScan_VINCULIN_1	-	no_errors
TSPAN2	10100	genome.wustl.edu	36	1	115397524	115397524	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2808-03D-01W-0755-09	TCGA-AB-2808-11D-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	115397524	115397524	G	A	SNP	TSPAN2	NM_005725	human	genbank	54_36p	-1	reviewed	missense	c.599	p.T200M	1.000	HMMPfam_Tetraspannin	HMMPfam_Tetraspannin,PatternScan_TM4_1,superfamily_Tetraspanin	-	no_errors
C17orf97	400566	genome.wustl.edu	36	17	263670	263670	+	Missense_Mutation	SNP	G	G	C			TCGA-AB-2808-03D-01W-0755-09	TCGA-AB-2808-11D-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	263670	263670	G	C	SNP	C17orf97	NM_001013672	human	genbank	54_36p	+1	validated	missense	c.720	p.E240D	0.000	NULL	NULL	-	no_errors
LOC121296	121296	genome.wustl.edu	36	12	125915679	125915679	+	RNA	SNP	G	G	A			TCGA-AB-2808-03D-01W-0755-09	TCGA-AB-2808-11D-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	125915679	125915679	G	A	SNP	LOC121296	XR_016630	human	genbank	54_36p	+1	model	rna	NULL	NULL	1.000	-	-	-	no_errors
