Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
DSC2	1824	genome.wustl.edu	36	18	26923482	26923482	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2839-03B-01W-0728-08	TCGA-AB-2839-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	18	26923482	26923482	C	T	SNP	DSC2	NM_024422	human	genbank	54_36p	-1	reviewed	missense	c.548	p.R183Q	0.003	HMMPfam_Cadherin,superfamily_Cadherin-like,HMMSmart_SM00112	superfamily_Cadherin-like,HMMPfam_Cadherin_pro,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1	-	no_errors
HMX1	3166	genome.wustl.edu	36	4	40199	40199	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2839-03B-01W-0728-08	TCGA-AB-2839-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	40199	40199	G	A	SNP	HMX1	NM_018942	human	genbank	54_36p	-1	validated	missense	c.899	p.P300L	0.004	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon
PRSS3	5646	genome.wustl.edu	36	9	33785590	33785590	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2839-03B-01W-0728-08	TCGA-AB-2839-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	33785590	33785590	C	T	SNP	PRSS3	NM_002771	human	genbank	54_36p	+1	reviewed	missense	c.19	p.L7F	0.941	NULL	superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS	-	no_errors
LOC100132768	100132768	genome.wustl.edu	36	X	9335465	9335465	+	RNA	SNP	G	G	C			TCGA-AB-2839-03B-01W-0728-08	TCGA-AB-2839-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	9335465	9335465	G	C	SNP	LOC100132768	XR_037393	human	genbank	54_36p	+1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
CD2AP	23607	genome.wustl.edu	36	6	47579107	47579107	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2839-03B-01W-0728-08	TCGA-AB-2839-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	47579107	47579107	G	T	SNP	CD2AP	NM_012120	human	genbank	54_36p	+1	reviewed	missense	c.137	p.R46I	1.000	HMMSmart_SH3,HMMPfam_SH3_1,superfamily_SH3	HMMSmart_SH3,HMMPfam_SH3_1,superfamily_SH3	-	no_errors
IGSF5	150084	genome.wustl.edu	36	21	40064940	40064940	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2839-03B-01W-0728-08	TCGA-AB-2839-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	21	40064940	40064940	G	A	SNP	IGSF5	NM_001080444	human	genbank	54_36p	+1	provisional	missense	c.646	p.V216M	0.992	superfamily_SSF48726,HMMSmart_IG	HMMPfam_I-set,superfamily_SSF48726,HMMSmart_IG	-	no_errors
TM6SF1	53346	genome.wustl.edu	36	15	81575626	81575626	+	Silent	SNP	C	C	T			TCGA-AB-2839-03B-01W-0728-08	TCGA-AB-2839-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	81575626	81575626	C	T	SNP	TM6SF1	NM_023003	human	genbank	54_36p	+1	validated	silent	c.222	p.S74	0.954	NULL	NULL	-	no_errors
LOC729915	729915	genome.wustl.edu	36	5	34228468	34228468	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2839-03B-01W-0728-08	TCGA-AB-2839-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	34228468	34228468	C	G	SNP	LOC729915	XM_001722873	human	genbank	54_36p	+1	model	missense	c.2451	p.H817Q	0.000	NULL	NULL	-	no_errors
SMC3	9126	genome.wustl.edu	36	10	112352977	112352977	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2839-03B-01W-0728-08	TCGA-AB-2839-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	112352977	112352977	C	T	SNP	SMC3	NM_005445	human	genbank	54_36p	+1	reviewed	missense	c.3521	p.T1174I	1.000	HMMPfam_SMC_N,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_SMC_N,HMMPfam_SMC_hinge,superfamily_Smc hinge domain,PatternScan_ABC_TRANSPORTER_1,superfamily_P-loop containing nucleoside triphosphate hydrolases,superfamily_BAG domain	-	no_errors
PCDHAC1	56135	genome.wustl.edu	36	5	140287313	140287313	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2839-03B-01W-0728-08	TCGA-AB-2839-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	140287313	140287313	C	A	SNP	PCDHAC1	NM_018898	human	genbank	54_36p	+1	reviewed	missense	c.652	p.Q218K	0.004	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112	superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors
LOC100130957	100130957	genome.wustl.edu	36	3	188164312	188164312	+	Frame_Shift_Del	DEL	G	G	-			TCGA-AB-2839-03B-01W-0728-08	TCGA-AB-2839-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	188164312	188164312	G	-	DEL	LOC100130957	XM_001719162	human	genbank	54_36p	+1	model	frame_shift_del	c.674	p.E226fs	0.053	NULL	NULL	-	no_errors
LOC729915	729915	genome.wustl.edu	36	5	34226672	34226672	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2839-03B-01W-0728-08	TCGA-AB-2839-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	34226672	34226672	C	G	SNP	LOC729915	XM_001722873	human	genbank	54_36p	+1	model	missense	c.655	p.P219A	0.453	NULL	NULL	-	no_errors
PCBP3	54039	genome.wustl.edu	36	21	46158377	46158377	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2839-03B-01W-0728-08	TCGA-AB-2839-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	21	46158377	46158377	G	A	SNP	PCBP3	ENST00000400304	human	ensembl	54_36p	+1	known	missense	c.589	p.D197N	1.000	NULL	HMMSmart_SM00322,superfamily_Eukaryotic type KH-domain (KH-domain type I),HMMPfam_KH_1	-	no_errors
POM121L9P	29774	genome.wustl.edu	36	22	22989578	22989578	+	RNA	SNP	A	A	G			TCGA-AB-2839-03B-01W-0728-08	TCGA-AB-2839-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	22	22989578	22989578	A	G	SNP	POM121L9P	NR_003714	human	genbank	54_36p	+1	validated	rna	NULL	NULL	0.081	-	-	-	pseudogene
DNMT3A	1788	genome.wustl.edu	36	2	25321637	25321637	+	Nonsense_Mutation	SNP	G	G	A			TCGA-AB-2839-03B-01W-0728-08	TCGA-AB-2839-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	25321637	25321637	G	A	SNP	DNMT3A	NM_022552	human	genbank	54_36p	-1	reviewed	nonsense	c.1543	p.Q515*	1.000	NULL	HMMPfam_PWWP,HMMSmart_SM00293,HMMPfam_DNA_methylase,superfamily_FYVE/PHD zinc finger,PatternScan_C5_MTASE_1,superfamily_S-adenosyl-L-methionine-dependent methyltransferases,superfamily_Tudor/PWWP/MBT	-	no_errors
ENSG00000212912	0	genome.wustl.edu	36	NT_113901	31000	31000	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2839-03B-01W-0728-08	TCGA-AB-2839-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	NT_113901	31000	31000	G	T	SNP	ENSG00000212912	ENST00000391599	human	ensembl	54_36p	-1	known	missense	c.272	p.T91K	NULL	NULL	NULL	-	no_errors
MYO7B	4648	genome.wustl.edu	36	2	128104907	128104907	+	Missense_Mutation	SNP	A	A	C			TCGA-AB-2839-03B-01W-0728-08	TCGA-AB-2839-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	128104907	128104907	A	C	SNP	MYO7B	NM_001080527	human	genbank	54_36p	+1	provisional	missense	c.4813	p.K1605Q	0.000	NULL	HMMPfam_IQ,HMMSmart_SM00015,HMMPfam_MyTH4,HMMSmart_SM00139,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_Myosin_head,HMMSmart_SM00242,HMMPfam_SH3_2,HMMPfam_FERM_M,superfamily_Second domain of FERM,HMMSmart_SM00295,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
OR5AS1	219447	genome.wustl.edu	36	11	55554670	55554670	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2839-03B-01W-0728-08	TCGA-AB-2839-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	55554670	55554670	C	A	SNP	OR5AS1	NM_001001921	human	genbank	54_36p	+1	provisional	missense	c.200	p.S67Y	0.965	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
ZNF835	90485	genome.wustl.edu	36	19	61868360	61868360	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2839-03B-01W-0728-08	TCGA-AB-2839-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	61868360	61868360	C	T	SNP	ZNF835	NM_001005850	human	genbank	54_36p	-1	provisional	missense	c.85	p.V29I	0.000	NULL	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
NPM1	4869	genome.wustl.edu	36	5	170770152	170770153	+	Frame_Shift_Ins	INS	-	-	TATG			TCGA-AB-2839-03B-01W-0728-08	TCGA-AB-2839-11B-01W-0729-08					-	-	Verified	Valid	Somatic		Capture				Illumina GAIIx	5	170770152	170770153	0	TATG	INS	NPM1	NM_002520	human	genbank	54_36p	1	validated	frame_shift_ins	c.863_864	p.W288fs	1.000:1.000	NULL	Nucleoplasmin;HMMPfam_Nucleoplasmin;Nucleoplasmin-like	-	NA
NRAS	4893	genome.wustl.edu	36	1	115060267	115060267	+	Missense_Mutation	SNP	C	C	T	rs121434595		TCGA-AB-2839-03B-01W-0728-08	TCGA-AB-2839-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	115060267	115060267	C	T	SNP	NRAS	NM_002524	human	genbank	54_36p	-1	reviewed	missense	c.38	p.G13D	1.000	HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
PTPN11	5781	genome.wustl.edu	36	12	111424364	111424364	+	Missense_Mutation	SNP	A	A	C			TCGA-AB-2839-03B-01W-0728-08	TCGA-AB-2839-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	111424364	111424364	A	C	SNP	PTPN11	NM_002834	human	genbank	54_36p	+1	reviewed	missense	c.1633	p.I545L	1.000	NULL	HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMPfam_SH2,HMMSmart_SM00252,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II,superfamily_SH2 domain	-	no_errors
C2orf18	54978	genome.wustl.edu	36	2	26851539	26851539	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2839-03B-01W-0728-08	TCGA-AB-2839-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	26851539	26851539	C	A	SNP	C2orf18	NM_017877	human	genbank	54_36p	+1	validated	missense	c.274	p.L92M	1.000	superfamily_SSF103481	superfamily_SSF103481,HMMPfam_DUF6	-	no_errors
COL1A1	1277	genome.wustl.edu	36	17	45627460	45627460	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2839-03B-01W-0728-08	TCGA-AB-2839-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	45627460	45627460	C	A	SNP	COL1A1	NM_000088	human	genbank	54_36p	-1	reviewed	missense	c.1300	p.G434C	1.000	HMMPfam_Collagen	HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,HMMPfam_Collagen,HMMSmart_SM00038,HMMPfam_COLFI	-	no_errors
CEBPA	1050	genome.wustl.edu	36	19	38484134	38484134	+	Frame_Shift_Del	DEL	G	G	-			TCGA-AB-2839-03B-01W-0728-08	TCGA-AB-2839-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	38484134	38484134	G	-	DEL	CEBPA	NM_004364	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.1027	p.R343fs	1.000	HMMSmart_BRLZ	PatternScan_BZIP_BASIC,HMMSmart_BRLZ,HMMPfam_bZIP_2	-	no_errors
TGFBI	7045	genome.wustl.edu	36	5	135424452	135424452	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2839-03B-01W-0728-08	TCGA-AB-2839-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	135424452	135424452	C	T	SNP	TGFBI	NM_000358	human	genbank	54_36p	+1	reviewed	missense	c.1834	p.P612S	0.998	superfamily_FAS1 domain,HMMPfam_Fasciclin,HMMSmart_SM00554	HMMPfam_EMI,superfamily_FAS1 domain,HMMPfam_Fasciclin,HMMSmart_SM00554	-	no_errors
KISS1	3814	genome.wustl.edu	36	1	202426235	202426235	+	Frame_Shift_Del	DEL	T	T	-			TCGA-AB-2839-03B-01W-0728-08	TCGA-AB-2839-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	202426235	202426235	T	-	DEL	KISS1	NM_002256	human	genbank	54_36p	-1	validated	frame_shift_del	c.417	p.*139fs	0.000	NULL	NULL	-	no_errors
WT1	7490	genome.wustl.edu	36	11	32374483	32374484	+	Frame_Shift_Ins	INS	-	-	CCGA			TCGA-AB-2839-03B-01W-0728-08	TCGA-AB-2839-11B-01W-0729-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	32374483	32374484	-	CCGA	INS	WT1	NM_024426	human	genbank	54_36p	-1	reviewed	frame_shift_ins	c.1145_1144	p.A382fs	0.852:0.833	HMMPfam_WT1	HMMPfam_WT1,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
RALGAPA2	57186	genome.wustl.edu	36	20	20558211	20558211	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2839-03B-01W-0728-08	TCGA-AB-2839-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	20	20558211	20558211	C	A	SNP	C20orf74	NM_020343	human	genbank	54_36p	-1	validated	missense	c.1029	p.Q343H	0.972	NULL	superfamily_Rap/Ran-GAP (Pfam 02145),HMMPfam_Rap_GAP	-	no_errors
LOC730978	730978	genome.wustl.edu	36	1	222203178	222203178	+	RNA	SNP	G	G	A			TCGA-AB-2839-03B-01W-0728-08	TCGA-AB-2839-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	222203178	222203178	G	A	SNP	LOC730978	XR_037258	human	genbank	54_36p	+1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
CACNA2D4	93589	genome.wustl.edu	36	12	1833394	1833394	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2839-03B-01W-0728-08	TCGA-AB-2839-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	1833394	1833394	C	A	SNP	CACNA2D4	NM_172364	human	genbank	54_36p	-1	reviewed	missense	c.2230	p.A744S	0.824	NULL	HMMPfam_VWA_N,superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,HMMPfam_Cache_1	-	no_errors
KDR	3791	genome.wustl.edu	36	4	55675057	55675057	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2839-03B-01W-0728-08	TCGA-AB-2839-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	55675057	55675057	G	A	SNP	KDR	NM_002253	human	genbank	54_36p	-1	validated	missense	c.791	p.S264F	0.630	HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_RECEPTOR_TYR_KIN_III,HMMSmart_IGc2,HMMSmart_IG,PatternScan_PROTEIN_KINASE_TYR,superfamily_Kinase_like,HMMPfam_I-set,HMMPfam_V-set,HMMPfam_ig,PatternScan_PROTEIN_KINASE_ATP,superfamily_SSF48726	-	no_errors
SLC39A5	283375	genome.wustl.edu	36	12	54917304	54917304	+	Silent	SNP	G	G	T			TCGA-AB-2839-03B-01W-0728-08	TCGA-AB-2839-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	54917304	54917304	G	T	SNP	SLC39A5	NM_173596	human	genbank	54_36p	+1	validated	silent	c.1389	p.V463	0.997	HMMPfam_Zip	HMMPfam_Zip	-	no_errors
C15orf57	90416	genome.wustl.edu	36	15	38642377	38642377	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2839-03B-01W-0728-08	TCGA-AB-2839-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	38642377	38642377	C	T	SNP	C15orf57	NM_001080791	human	genbank	54_36p	-1	validated	missense	c.157	p.V53M	0.251	NULL	NULL	-	no_errors
SLC1A1	6505	genome.wustl.edu	36	9	4566050	4566050	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2839-03B-01W-0728-08	TCGA-AB-2839-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	4566050	4566050	G	A	SNP	SLC1A1	NM_004170	human	genbank	54_36p	+1	validated	missense	c.925	p.V309I	0.986	HMMPfam_SDF	HMMPfam_SDF,PatternScan_NA_DICARBOXYL_SYMP_1,PatternScan_NA_DICARBOXYL_SYMP_2	-	no_errors
VPRBP	9730	genome.wustl.edu	36	3	51441853	51441853	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2839-03B-01W-0728-08	TCGA-AB-2839-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	51441853	51441853	T	C	SNP	VPRBP	ENST00000273612	human	ensembl	54_36p	-1	known	missense	c.1589	p.K530R	1.000	superfamily_ARM repeat	superfamily_ARM repeat,HMMSmart_SM00667,HMMPfam_LisH,superfamily_WD40 repeat-like	-	no_errors
LOC441013	441013	genome.wustl.edu	36	4	43107348	43107348	+	RNA	SNP	G	G	T			TCGA-AB-2839-03B-01W-0728-08	TCGA-AB-2839-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	43107348	43107348	G	T	SNP	LOC441013	XR_016299	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
DUOXA2	405753	genome.wustl.edu	36	15	43195656	43195656	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2839-03B-01W-0728-08	TCGA-AB-2839-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	43195656	43195656	C	A	SNP	DUOXA2	NM_207581	human	genbank	54_36p	+1	validated	missense	c.248	p.T83N	0.999	HMMPfam_DuoxA	HMMPfam_DuoxA	-	no_errors
CNTN6	27255	genome.wustl.edu	36	3	1390299	1390299	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2839-03B-01W-0728-08	TCGA-AB-2839-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	1390299	1390299	C	A	SNP	CNTN6	NM_014461	human	genbank	54_36p	+1	reviewed	missense	c.1798	p.P600T	1.000	superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3	superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IGc2,HMMSmart_IG,superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3	-	no_errors
IL27RA	9466	genome.wustl.edu	36	19	14003705	14003705	+	Silent	SNP	C	C	T			TCGA-AB-2839-03B-01W-0728-08	TCGA-AB-2839-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	14003705	14003705	C	T	SNP	IL27RA	NM_004843	human	genbank	54_36p	+1	reviewed	silent	c.21	p.A7	0.003	NULL	superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	-	no_errors
LOC100132632	100132632	genome.wustl.edu	36	1	78436	78436	+	Missense_Mutation	SNP	C	C	A	rs111507882		TCGA-AB-2839-03B-01W-0728-08	TCGA-AB-2839-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	78436	78436	C	A	SNP	LOC100132632	XM_001724183	human	genbank	54_36p	+1	model	missense	c.409	p.H137N	0.000	NULL	NULL	-	no_errors
LOC130728	130728	genome.wustl.edu	36	2	49960073	49960074	+	RNA	INS	-	-	AAAC			TCGA-AB-2839-03B-01W-0728-08	TCGA-AB-2839-11B-01W-0729-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	49960073	49960074	-	AAAC	INS	LOC130728	XR_017361	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.686:0.699	-	-	-	pseudogene
ENSG00000215614	0	genome.wustl.edu	36	NT_113923	51303	51303	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2839-03B-01W-0728-08	TCGA-AB-2839-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	NT_113923	51303	51303	C	T	SNP	ENSG00000215614	ENST00000400675	human	ensembl	54_36p	+1	known	missense	c.169	p.P57S	NULL	HMMPfam_RFPL3_antisense	HMMPfam_RFPL3_antisense	-	no_start_codon:no_stop_codon
C2orf62	375307	genome.wustl.edu	36	2	218930643	218930643	+	Silent	SNP	C	C	T			TCGA-AB-2839-03B-01W-0728-08	TCGA-AB-2839-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	218930643	218930643	C	T	SNP	C2orf62	NM_198559	human	genbank	54_36p	+1	predicted	silent	c.261	p.F87	0.007	NULL	NULL	-	no_errors
