Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
ENSG00000211971	0	genome.wustl.edu	36	14	106185013	106185013	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2848-03B-01W-0728-08	TCGA-AB-2848-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	14	106185013	106185013	C	A	SNP	ENSG00000211971	ENST00000390631	human	ensembl	54_36p	-1	known	missense	c.127	p.A43S	0.023	HMMPfam_V-set,superfamily_SSF48726,HMMSmart_IGv	HMMPfam_V-set,superfamily_SSF48726,HMMSmart_IGv	-	no_stop_codon:bad_bp_length_for_coding_region
ZNF525	170958	genome.wustl.edu	36	19	58579003	58579003	+	RNA	SNP	T	T	A			TCGA-AB-2848-03B-01W-0728-08	TCGA-AB-2848-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	58579003	58579003	T	A	SNP	ZNF525	NR_003699	human	genbank	54_36p	+1	validated	rna	NULL	NULL	0.000	-	-	-	pseudogene
VN1R4	317703	genome.wustl.edu	36	19	58461945	58461945	+	Silent	SNP	G	G	A			TCGA-AB-2848-03B-01W-0728-08	TCGA-AB-2848-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	58461945	58461945	G	A	SNP	VN1R4	NM_173857	human	genbank	54_36p	-1	validated	silent	c.786	p.P262	0.002	superfamily_Family A G protein-coupled receptor-like,HMMPfam_V1R	superfamily_Family A G protein-coupled receptor-like,HMMPfam_V1R	-	no_errors
RTEL1	51750	genome.wustl.edu	36	20	61763266	61763268	+	In_Frame_Del	DEL	GCT	GCT	-			TCGA-AB-2848-03B-01W-0728-08	TCGA-AB-2848-11B-01W-0729-08	GCT	GCT			GCT	GCT	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	20	61763266	61763268	GCT	-	DEL	RTEL1	NM_032957	human	genbank	54_36p	+1	reviewed	in_frame_del	c.274_276	p.A95in_frame_del	0.764:0.772:0.013	superfamily_SSF52540,HMMSmart_DEXDc2	superfamily_SSF52540,HMMSmart_DEXDc2,HMMPfam_ResIII,HMMPfam_DEAD_2,HMMSmart_HELICc2,superfamily_SSF57850	-	no_errors
WHAMMP3	339005	genome.wustl.edu	36	15	20751735	20751735	+	Silent	SNP	T	T	C			TCGA-AB-2848-03B-01W-0728-08	TCGA-AB-2848-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	20751735	20751735	T	C	SNP	WHAMML1	ENST00000400153	human	ensembl	54_36p	-1	known	silent	c.228	p.Q76	1.000	NULL	NULL	-	no_errors
ENSG00000214820	0	genome.wustl.edu	36	3	44595859	44595859	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2848-03B-01W-0728-08	TCGA-AB-2848-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	44595859	44595859	C	T	SNP	ENSG00000214820	ENST00000399045	human	ensembl	54_36p	-1	known	missense	c.1513	p.E505K	1.000	NULL	superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH	-	no_start_codon:no_stop_codon
NPM1	4869	genome.wustl.edu	36	5	170770152	170770153	+	Frame_Shift_Ins	INS	-	-	CAAG			TCGA-AB-2848-03B-01W-0728-08	TCGA-AB-2848-11B-01W-0729-08					-	-	Verified	Valid	Somatic		Capture				Illumina GAIIx	5	170770152	170770153	0	CAAG	INS	NPM1	NM_002520	human	genbank	54_36p	1	validated	frame_shift_ins	c.863_864	p.W288fs	1.000:1.000	NULL	Nucleoplasmin;HMMPfam_Nucleoplasmin;Nucleoplasmin-like	-	NA
LOC729468	729468	genome.wustl.edu	36	2	114037221	114037221	+	Silent	SNP	G	G	A			TCGA-AB-2848-03B-01W-0728-08	TCGA-AB-2848-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	114037221	114037221	G	A	SNP	LOC729468	XM_001722573	human	genbank	54_36p	+1	model	silent	c.57	p.S19	1.000	superfamily_Phosphoglucomutase first 3 domains,HMMPfam_PGM_PMM_I	superfamily_Phosphoglucomutase first 3 domains,HMMPfam_PGM_PMM_I,PatternScan_PGM_PMM,PatternScan_TRYPSIN_HIS	-	no_errors
