Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
IQCA1	79781	genome.wustl.edu	36	2	236898072	236898072	+	Nonstop_Mutation	SNP	A	A	T			TCGA-AB-2851-03B-01W-0728-08	TCGA-AB-2851-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	236898072	236898072	A	T	SNP	IQCA1	NM_024726	human	genbank	54_36p	-1	provisional	nonstop	c.2467	p.*823K	0.798	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_AAA	-	no_errors
RYR1	6261	genome.wustl.edu	36	19	43730855	43730855	+	Silent	SNP	C	C	T			TCGA-AB-2851-03B-01W-0728-08	TCGA-AB-2851-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	43730855	43730855	C	T	SNP	RYR1	NM_000540	human	genbank	54_36p	+1	reviewed	silent	c.12237	p.Y4079	0.998	superfamily_EF-hand	HMMPfam_RYDR_ITPR,HMMPfam_RyR,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_SPRY,HMMPfam_Ion_trans,HMMPfam_RR_TM4-6,HMMPfam_RIH_assoc,HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMSmart_SM00449,superfamily_EF-hand	-	no_errors
SULF1	23213	genome.wustl.edu	36	8	70698766	70698766	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2851-03B-01W-0728-08	TCGA-AB-2851-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	70698766	70698766	C	T	SNP	SULF1	NM_015170	human	genbank	54_36p	+1	validated	missense	c.1630	p.R544C	1.000	superfamily_Alkaline_phosphatase_core	PatternScan_SULFATASE_2,HMMPfam_Sulfatase,superfamily_Alkaline_phosphatase_core,PatternScan_SULFATASE_1	-	no_errors
DNMT3A	1788	genome.wustl.edu	36	2	25320534	25320534	+	Frame_Shift_Del	DEL	C	C	-			TCGA-AB-2851-03B-01W-0728-08	TCGA-AB-2851-11B-01W-0729-08	C	C			C	C	Verified	Valid	Somatic		Capture				Illumina GAIIx	2	25320534	25320534	C	0	DEL	DNMT3A	NM_022552	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.1844	p.Q615fs	1	NULL	HMMPfam_PWWP;HMMPfam_DNA_methylase;superfamily_FYVE/PHD zinc finger;superfamily_S-adenosyl-L-methionine-dependent methyltransferases;superfamily_Tudor/PWWP/MBT	(deletion:cds_exon[25320528;25320711])	NA
MST1	4485	genome.wustl.edu	36	3	49698920	49698920	+	Splice_Site	SNP	T	T	G			TCGA-AB-2851-03B-01W-0728-08	TCGA-AB-2851-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	49698920	49698920	T	G	SNP	MST1	NM_020998	human	genbank	54_36p	-1	validated	splice_site	c.806-2	e8-2	0.046	-	-	-	no_errors
FLT3	2322	genome.wustl.edu	36	13	27490642	27490642	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2851-03B-01W-0728-08	TCGA-AB-2851-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	13	27490642	27490642	C	A	SNP	FLT3	NM_004119	human	genbank	54_36p	-1	reviewed	missense	c.2503	p.D835Y	1.000	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_RECEPTOR_TYR_KIN_III,PatternScan_PROTEIN_KINASE_TYR,superfamily_Kinase_like,HMMPfam_ig,PatternScan_PROTEIN_KINASE_ATP,superfamily_SSF48726	-	no_errors
TTC21B	79809	genome.wustl.edu	36	2	166455598	166455598	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2851-03B-01W-0728-08	TCGA-AB-2851-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	166455598	166455598	G	T	SNP	TTC21B	NM_024753	human	genbank	54_36p	-1	validated	missense	c.3097	p.L1033I	1.000	superfamily_TPR-like,HMMSmart_SM00028	superfamily_TPR-like,HMMPfam_TPR_1,HMMSmart_SM00028	-	no_errors
NGRN	51335	genome.wustl.edu	36	15	88610590	88610590	+	Silent	SNP	T	T	G			TCGA-AB-2851-03B-01W-0728-08	TCGA-AB-2851-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	88610590	88610590	T	G	SNP	NGRN	NM_001033088	human	genbank	54_36p	+1	provisional	silent	c.231	p.G77	0.880	HMMPfam_Neugrin	HMMPfam_Neugrin	-	no_errors
MICALL2	79778	genome.wustl.edu	36	7	1446811	1446811	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2851-03B-01W-0728-08	TCGA-AB-2851-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	1446811	1446811	C	T	SNP	MICALL2	NM_182924	human	genbank	54_36p	-1	validated	missense	c.1747	p.G583R	0.003	NULL	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,HMMSmart_SM00033,superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM	-	no_errors
TENC1	23371	genome.wustl.edu	36	12	51738659	51738659	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-2851-03B-01W-0728-08	TCGA-AB-2851-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	51738659	51738659	T	A	SNP	TENC1	NM_015319	human	genbank	54_36p	+1	reviewed	missense	c.1292	p.V431D	1.000	HMMPfam_PTEN_C2,superfamily_C2_CaLB	superfamily_SSF57889,HMMSmart_C1,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,superfamily_SSF52799,HMMPfam_PTEN_C2,superfamily_C2_CaLB,superfamily_SSF55550,HMMSmart_SH2,HMMPfam_SH2,superfamily_SSF50729,HMMSmart_PTB,HMMPfam_PTB	-	no_errors
RP1L1	94137	genome.wustl.edu	36	8	10507478	10507478	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2851-03B-01W-0728-08	TCGA-AB-2851-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	10507478	10507478	C	T	SNP	RP1L1	NM_178857	human	genbank	54_36p	-1	validated	missense	c.1540	p.G514S	0.000	NULL	HMMPfam_DCX,HMMPfam_S-antigen,superfamily_SSF89837	-	no_errors
TPRG1	285386	genome.wustl.edu	36	3	190521248	190521248	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2851-03B-01W-0728-08	TCGA-AB-2851-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	190521248	190521248	T	C	SNP	TPRG1	NM_198485	human	genbank	54_36p	+1	validated	missense	c.773	p.I258T	1.000	NULL	NULL	-	no_errors
PAQR9	344838	genome.wustl.edu	36	3	144163829	144163829	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2851-03B-01W-0728-08	TCGA-AB-2851-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	144163829	144163829	G	A	SNP	PAQR9	NM_198504	human	genbank	54_36p	-1	validated	missense	c.1040	p.S347L	0.008	NULL	HMMPfam_HlyIII	-	no_errors
SMC3	9126	genome.wustl.edu	36	10	112332346	112332346	+	Nonsense_Mutation	SNP	A	A	T			TCGA-AB-2851-03B-01W-0728-08	TCGA-AB-2851-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	112332346	112332346	A	T	SNP	SMC3	NM_005445	human	genbank	54_36p	+1	reviewed	nonsense	c.760	p.R254*	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_SMC_N	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_SMC_N,superfamily_BAG domain,superfamily_Smc hinge domain,HMMPfam_SMC_hinge,PatternScan_ABC_TRANSPORTER_1	-	no_errors
BUB1	699	genome.wustl.edu	36	2	111135776	111135776	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2851-03B-01W-0728-08	TCGA-AB-2851-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	111135776	111135776	G	A	SNP	BUB1	NM_004336	human	genbank	54_36p	-1	reviewed	missense	c.1073	p.A358V	0.000	NULL	HMMPfam_Mad3_BUB1_I,HMMSmart_SM00777,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
RP1L1	94137	genome.wustl.edu	36	8	10505057	10505057	+	Missense_Mutation	SNP	G	G	C			TCGA-AB-2851-03B-01W-0728-08	TCGA-AB-2851-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	10505057	10505057	G	C	SNP	RP1L1	NM_178857	human	genbank	54_36p	-1	validated	missense	c.3961	p.Q1321E	0.000	NULL	HMMPfam_DCX,HMMPfam_S-antigen,superfamily_SSF89837	-	no_errors
