Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
LOC100132025	100132025	genome.wustl.edu	36	15	20956367	20956367	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2864-03B-01W-0728-08	TCGA-AB-2864-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	20956367	20956367	G	A	SNP	LOC100132025	XM_001723658	human	genbank	54_36p	-1	model	missense	c.236	p.A79V	0.307	NULL	NULL	-	no_errors
ALPK2	115701	genome.wustl.edu	36	18	54355368	54355382	+	In_Frame_Del	DEL	CAGTTGATGTGTCCT	CAGTTGATGTGTCCT	-			TCGA-AB-2864-03B-01W-0728-08	TCGA-AB-2864-11B-01W-0729-08	CAGTTGATGTGTCCT	CAGTTGATGTGTCCT			CAGTTGATGTGTCCT	CAGTTGATGTGTCCT	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	18	54355368	54355382	CAGTTGATGTGTCCT	-	DEL	ALPK2	NM_052947	human	genbank	54_36p	-1	validated	in_frame_del	c.3031_3017	p.EDTST1006in_frame_del	0.000:0.001:0.005:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.001:0.002:0.005:0.004:0.005	NULL	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00811,HMMPfam_Alpha_kinase	-	no_errors
ANKRD33	341405	genome.wustl.edu	36	12	50571180	50571180	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2864-03D-01W-0755-09	TCGA-AB-2864-11D-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	12	50571180	50571180	C	T	SNP	ANKRD33	NM_182608	human	genbank	54_36p	+1	validated	missense	c.1183	p.P395S	0.144	NULL	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank	-	no_errors
HS6ST1	9394	genome.wustl.edu	36	2	128742330	128742330	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2864-03D-01W-0755-09	TCGA-AB-2864-11D-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	2	128742330	128742330	C	T	SNP	HS6ST1	NM_004807	human	genbank	54_36p	-1	reviewed	missense	c.1112	p.R371H	1.000	HMMPfam_HS6ST	HMMPfam_HS6ST	-	no_errors
ATRNL1	26033	genome.wustl.edu	36	10	116915306	116915306	+	Splice_Site	SNP	A	A	T			TCGA-AB-2864-03B-01W-0728-08	TCGA-AB-2864-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	116915306	116915306	A	T	SNP	ATRNL1	NM_207303	human	genbank	54_36p	+1	validated	splice_site	c.1005-2	e7-2	1.000	-	-	-	no_errors
HNRNPCL1	343069	genome.wustl.edu	36	1	12830416	12830416	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2864-03B-01W-0728-08	TCGA-AB-2864-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	12830416	12830416	T	C	SNP	HNRNPCL1	NM_001013631	human	genbank	54_36p	-1	validated	missense	c.314	p.Y105C	1.000	superfamily_RNA-binding domain RBD	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1	-	no_errors
C17orf57	124989	genome.wustl.edu	36	17	42823803	42823803	+	Silent	SNP	G	G	A			TCGA-AB-2864-03B-01W-0728-08	TCGA-AB-2864-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	42823803	42823803	G	A	SNP	C17orf57	NM_152347	human	genbank	54_36p	+1	predicted	silent	c.1584	p.A528	0.274	superfamily_EF-hand	superfamily_EF-hand	-	no_errors
ZNF407	55628	genome.wustl.edu	36	18	70904742	70904742	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2864-03D-01W-0755-09	TCGA-AB-2864-11D-01W-0755-09	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	18	70904742	70904742	A	G	SNP	ZNF407	NM_017757	human	genbank	54_36p	+1	provisional	missense	c.6077	p.Q2026R	0.513	NULL	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00451,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_errors
CCDC88C	440193	genome.wustl.edu	36	14	90875418	90875418	+	Silent	SNP	G	G	A			TCGA-AB-2864-03D-01W-0755-09	TCGA-AB-2864-11D-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	14	90875418	90875418	G	A	SNP	CCDC88C	NM_001080414	human	genbank	54_36p	-1	validated	silent	c.766	p.L256	1.000	superfamily_Prefoldin	superfamily_Prefoldin	-	no_errors
ATP13A5	344905	genome.wustl.edu	36	3	194511175	194511175	+	Missense_Mutation	SNP	G	G	C			TCGA-AB-2864-03B-01W-0728-08	TCGA-AB-2864-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	194511175	194511175	G	C	SNP	ATP13A5	NM_198505	human	genbank	54_36p	-1	provisional	missense	c.2471	p.A824G	1.000	superfamily_SSF81665,superfamily_SSF56784	superfamily_SSF81665,HMMPfam_Cation_ATPase_N,HMMPfam_E1-E2_ATPase,superfamily_SSF81653,PatternScan_ATPASE_E1_E2,superfamily_SSF81660,superfamily_SSF56784	-	no_errors
FER1L6-AS1	439941	genome.wustl.edu	36	8	125095869	125095869	+	Missense_Mutation	SNP	A	A	T			TCGA-AB-2864-03B-01W-0728-08	TCGA-AB-2864-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	125095869	125095869	A	T	SNP	C8orf54	ENST00000321393	human	ensembl	54_36p	-1	known	missense	c.177	p.N59K	0.000	NULL	NULL	-	no_errors
DNA2	1763	genome.wustl.edu	36	10	69851997	69851997	+	Missense_Mutation	SNP	A	A	T			TCGA-AB-2864-03B-01W-0728-08	TCGA-AB-2864-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	69851997	69851997	A	T	SNP	DNA2	NM_001080449	human	genbank	54_36p	-1	provisional	missense	c.2946	p.N982K	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_Dna2,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ENSG00000179799	0	genome.wustl.edu	36	3	75488804	75488808	+	Frame_Shift_Del	DEL	AACAC	AACAC	-			TCGA-AB-2864-03B-01W-0728-08	TCGA-AB-2864-11B-01W-0729-08	AACAC	AACAC			AACAC	AACAC	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	75488804	75488808	AACAC	-	DEL	ENSG00000179799	ENST00000331736	human	ensembl	54_36p	-1	known	frame_shift_del	c.476_472	p.V158fs	0.001:0.000:0.000:0.000:0.000	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1	-	no_errors
LOC390597	390597	genome.wustl.edu	36	15	64889436	64889437	+	RNA	INS	-	-	TGGA			TCGA-AB-2864-03B-01W-0728-08	TCGA-AB-2864-11B-01W-0729-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	64889436	64889437	-	TGGA	INS	LOC390597	XR_017154	human	genbank	54_36p	+1	model	rna	NULL	NULL	1.000:1.000	-	-	-	pseudogene
TPSAB1	7177	genome.wustl.edu	36	16	1231455	1231455	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2864-03D-01W-0755-09	TCGA-AB-2864-11D-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	16	1231455	1231455	G	A	SNP	TPSAB1	NM_003294	human	genbank	54_36p	+1	reviewed	missense	c.253	p.A85T	0.000	HMMSmart_SM00020,HMMPfam_Trypsin,superfamily_Trypsin-like serine proteases	HMMSmart_SM00020,HMMPfam_Trypsin,superfamily_Trypsin-like serine proteases,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	no_errors
LOC727882	727882	genome.wustl.edu	36	1	7315	7315	+	RNA	SNP	C	C	T	rs2981831		TCGA-AB-2864-03D-01W-0755-09	TCGA-AB-2864-11D-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	1	7315	7315	C	T	SNP	LOC727882	XR_015152	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.022	-	-	-	pseudogene
KRAS	3845	genome.wustl.edu	36	12	25271549	25271549	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2864-03D-01W-0755-09	TCGA-AB-2864-11D-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	12	25271549	25271549	G	T	SNP	KRAS	NM_033360	human	genbank	54_36p	-1	reviewed	missense	c.176	p.A59E	1.000	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
LSS	4047	genome.wustl.edu	36	21	46460807	46460807	+	Missense_Mutation	SNP	A	A	C			TCGA-AB-2864-03D-01W-0755-09	TCGA-AB-2864-11D-01W-0755-09	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	21	46460807	46460807	A	C	SNP	LSS	NM_001001438	human	genbank	54_36p	-1	reviewed	missense	c.707	p.V236G	1.000	superfamily_Terp_cyc_toroid	superfamily_Terp_cyc_toroid,HMMPfam_Prenyltrans,PatternScan_TERPENE_SYNTHASES	-	no_errors
SLC6A9	6536	genome.wustl.edu	36	1	44241210	44241210	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-2864-03D-01W-0755-09	TCGA-AB-2864-11D-01W-0755-09	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	1	44241210	44241210	T	A	SNP	SLC6A9	NM_201649	human	genbank	54_36p	-1	validated	missense	c.844	p.N282Y	0.955	HMMPfam_SNF	HMMPfam_SNF,PatternScan_NA_NEUROTRAN_SYMP_1,PatternScan_NA_NEUROTRAN_SYMP_2	-	no_errors
OXR1	55074	genome.wustl.edu	36	8	107807662	107807662	+	Nonsense_Mutation	SNP	G	G	A			TCGA-AB-2864-03B-01W-0728-08	TCGA-AB-2864-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	107807662	107807662	G	A	SNP	OXR1	ENST00000297447	human	ensembl	54_36p	+1	known	nonsense	c.15	p.W5*	1.000	NULL	HMMSmart_TLDc,HMMPfam_TLD	-	no_errors
FRAS1	80144	genome.wustl.edu	36	4	79407100	79407100	+	Missense_Mutation	SNP	T	T	G			TCGA-AB-2864-03D-01W-0755-09	TCGA-AB-2864-11D-01W-0755-09	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	4	79407100	79407100	T	G	SNP	FRAS1	ENST00000380674	human	ensembl	54_36p	+1	known	missense	c.776	p.L259R	0.286	HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,HMMSmart_SM00215	HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,HMMPfam_Calx-beta,HMMSmart_SM00237,HMMSmart_SM00181,HMMSmart_SM00261,HMMSmart_SM00215,superfamily_Growth factor receptor domain	-	no_errors
ENSG00000211894	0	genome.wustl.edu	36	14	105206164	105206164	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2864-03D-01W-0755-09	TCGA-AB-2864-11D-01W-0755-09	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	14	105206164	105206164	T	C	SNP	ENSG00000211894	ENST00000390546	human	ensembl	54_36p	-1	known	missense	c.556	p.M186V	0.021	superfamily_SSF48726,HMMPfam_C1-set	superfamily_SSF48726,HMMPfam_C1-set,HMMSmart_IGc1,PatternScan_IG_MHC	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
MUC6	4588	genome.wustl.edu	36	11	1007325	1007325	+	Missense_Mutation	SNP	A	A	C			TCGA-AB-2864-03B-01W-0728-08	TCGA-AB-2864-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	1007325	1007325	A	C	SNP	MUC6	NM_005961	human	genbank	54_36p	-1	validated	missense	c.5476	p.Y1826D	0.000	NULL	HMMSmart_SM00216,HMMPfam_VWD,HMMPfam_C8,superfamily_Serine proterase inhibitors,HMMPfam_TIL,HMMSmart_SM00215,HMMSmart_SM00041	-	no_errors
LRRC37A3	374819	genome.wustl.edu	36	17	60322733	60322733	+	Missense_Mutation	SNP	A	A	T			TCGA-AB-2864-03B-01W-0728-08	TCGA-AB-2864-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	60322733	60322733	A	T	SNP	LRRC37A3	NM_199340	human	genbank	54_36p	-1	provisional	missense	c.1105	p.S369T	0.000	NULL	superfamily_SSF52058,HMMSmart_LRR_TYP,HMMPfam_LRR_1	-	no_errors
HNRNPA1L2	144983	genome.wustl.edu	36	13	52115494	52115494	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2864-03B-01W-0728-08	TCGA-AB-2864-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	13	52115494	52115494	A	G	SNP	HNRNPA1L2	NM_001011724	human	genbank	54_36p	+1	validated	missense	c.866	p.Y289C	1.000	NULL	superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1	-	no_errors
AGAP6	414189	genome.wustl.edu	36	10	51438681	51438682	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-AB-2864-03B-01W-0728-08	TCGA-AB-2864-11B-01W-0729-08	AA	AA			AA	AA	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	51438681	51438682	AA	-	DEL	AGAP6	ENST00000374056	human	ensembl	54_36p	+1	known	frame_shift_del	c.721_722	p.K241fs	1.000:1.000	NULL	superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,superfamily_ArfGAP,HMMPfam_ArfGap,HMMSmart_ArfGap,superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank	-	no_errors
LOC642587	642587	genome.wustl.edu	36	1	207672260	207672271	+	In_Frame_Del	DEL	AGCAGCAGCAGC	AGCAGCAGCAGC	-			TCGA-AB-2864-03D-01W-0755-09	TCGA-AB-2864-11D-01W-0755-09	AGCAGCAGCAGC	AGCAGCAGCAGC			AGCAGCAGCAGC	AGCAGCAGCAGC	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	1	207672260	207672271	AGCAGCAGCAGC	-	DEL	LOC642587	NM_001104548	human	genbank	54_36p	+1	validated	in_frame_del	c.252_263	p.AAAA88in_frame_del	0.000:0.000:0.001:0.001:0.002:0.001:0.002:0.001:0.000:0.001:0.002:0.000	NULL	NULL	-	no_errors
LOC645018	645018	genome.wustl.edu	36	4	144490512	144490515	+	Frame_Shift_Del	DEL	AGAT	AGAT	-			TCGA-AB-2864-03B-01W-0728-08	TCGA-AB-2864-11B-01W-0729-08	AGAT	AGAT			AGAT	AGAT	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	144490512	144490515	AGAT	-	DEL	LOC645018	XM_930178	human	genbank	54_36p	-1	model	frame_shift_del	c.209_206	p.Y69fs	1.000:1.000:0.996:1.000	NULL	superfamily_dsRNA-binding domain-like,HMMPfam_Ribosomal_S5,PatternScan_RIBOSOMAL_S5,superfamily_Ribosomal protein S5 domain 2-like,HMMPfam_Ribosomal_S5_C	-	pseudogene
RETNLB	84666	genome.wustl.edu	36	3	109958683	109958684	+	Frame_Shift_Ins	INS	-	-	GGGGATTA			TCGA-AB-2864-03B-01W-0728-08	TCGA-AB-2864-11B-01W-0729-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	109958683	109958684	-	GGGGATTA	INS	RETNLB	NM_032579	human	genbank	54_36p	-1	validated	frame_shift_ins	c.40_39	p.L13fs	0.854:0.881	HMMPfam_Resistin	HMMPfam_Resistin,superfamily_Resistin	-	no_errors
CENPB	1059	genome.wustl.edu	36	20	3714879	3714879	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AB-2864-03D-01W-0755-09	TCGA-AB-2864-11D-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	20	3714879	3714879	C	T	SNP	CENPB	NM_001810	human	genbank	54_36p	-1	reviewed	nonsense	c.252	p.W84*	1.000	superfamily_Homeodomain_like,HMMPfam_CenpB-DNA-bind,HMMSmart_CENPB	HMMPfam_CENP-B_N,superfamily_Homeodomain_like,HMMPfam_CenpB-DNA-bind,HMMSmart_CENPB,HMMPfam_DDE,HMMPfam_Cenp-B_dimeris,superfamily_SSF101160	-	no_errors
LOC730978	730978	genome.wustl.edu	36	1	222203862	222203862	+	RNA	SNP	A	A	G			TCGA-AB-2864-03D-01W-0755-09	TCGA-AB-2864-11D-01W-0755-09	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	1	222203862	222203862	A	G	SNP	LOC730978	XR_037258	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.999	-	-	-	pseudogene
GPS2	2874	genome.wustl.edu	36	17	7158187	7158187	+	Silent	SNP	T	T	C			TCGA-AB-2864-03B-01W-0728-08	TCGA-AB-2864-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	7158187	7158187	T	C	SNP	GPS2	NM_004489	human	genbank	54_36p	-1	reviewed	silent	c.333	p.L111	0.990	NULL	NULL	-	no_errors
LPO	4025	genome.wustl.edu	36	17	53675378	53675378	+	Silent	SNP	C	C	G			TCGA-AB-2864-03B-01W-0728-08	TCGA-AB-2864-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	53675378	53675378	C	G	SNP	LPO	NM_006151	human	genbank	54_36p	+1	validated	silent	c.39	p.S13	0.019	NULL	PatternScan_PEROXIDASE_1,PatternScan_PEROXIDASE_2,superfamily_Peroxidase_super,HMMPfam_An_peroxidase	-	no_errors
PZP	5858	genome.wustl.edu	36	12	9202328	9202328	+	Silent	SNP	A	A	G			TCGA-AB-2864-03D-01W-0755-09	TCGA-AB-2864-11D-01W-0755-09	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	12	9202328	9202328	A	G	SNP	PZP	NM_002864	human	genbank	54_36p	-1	validated	silent	c.3249	p.N1083	0.998	superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_A2M_comp	HMMPfam_A2M,HMMPfam_A2M_N,superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_A2M_recep,superfamily_Alpha-macroglobulin receptor domain,PatternScan_TONB_DEPENDENT_REC_1,HMMPfam_A2M_N_2,HMMPfam_A2M_comp,HMMPfam_Thiol-ester_cl,PatternScan_ALPHA_2_MACROGLOBULIN	-	no_errors
ZNF385C	201181	genome.wustl.edu	36	17	37432608	37432608	+	Missense_Mutation	SNP	T	T	G			TCGA-AB-2864-03D-01W-0755-09	TCGA-AB-2864-11D-01W-0755-09	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	17	37432608	37432608	T	G	SNP	ZNF385C	ENST00000393873	human	ensembl	54_36p	-1	known	missense	c.1102	p.T368P	0.845	NULL	HMMSmart_SM00451,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
RPL6	6128	genome.wustl.edu	36	12	111330795	111330795	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2864-03D-01W-0755-09	TCGA-AB-2864-11D-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	12	111330795	111330795	C	T	SNP	RPL6	NM_000970	human	genbank	54_36p	-1	reviewed	missense	c.49	p.E17K	0.240	NULL	HMMPfam_Ribosomal_L6e_N,HMMPfam_Ribosomal_L6e,PatternScan_RIBOSOMAL_L6E	-	no_errors
C6orf118	168090	genome.wustl.edu	36	6	165635643	165635643	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2864-03D-01W-0755-09	TCGA-AB-2864-11D-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	6	165635643	165635643	C	T	SNP	C6orf118	NM_144980	human	genbank	54_36p	-1	validated	missense	c.158	p.R53Q	0.017	NULL	NULL	-	no_errors
SKA3	221150	genome.wustl.edu	36	13	20644601	20644601	+	Frame_Shift_Del	DEL	G	G	-			TCGA-AB-2864-03B-01W-0728-08	TCGA-AB-2864-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	13	20644601	20644601	G	-	DEL	C13orf3	NM_145061	human	genbank	54_36p	-1	validated	frame_shift_del	c.208	p.Q70fs	0.958	NULL	NULL	-	no_errors
PRUNE2	158471	genome.wustl.edu	36	9	78508196	78508210	+	In_Frame_Del	DEL	GTGACAGCCTGCAAC	GTGACAGCCTGCAAC	-			TCGA-AB-2864-03B-01W-0728-08	TCGA-AB-2864-11B-01W-0729-08	GTGACAGCCTGCAAC	GTGACAGCCTGCAAC			GTGACAGCCTGCAAC	GTGACAGCCTGCAAC	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	78508196	78508210	GTGACAGCCTGCAAC	-	DEL	PRUNE2	ENST00000376718	human	ensembl	54_36p	-1	known	in_frame_del	c.7076_7062	p.LQAVT2355in_frame_del	0.994:0.955:0.952:0.911:0.888:0.272:0.194:0.036:0.048:0.066:0.066:0.023:0.016:0.001:0.000	NULL	HMMSmart_SM00516,superfamily_CRAL/TRIO domain,superfamily_Ferritin-like	-	no_errors
PCDHA13	56136	genome.wustl.edu	36	5	140244230	140244230	+	Silent	SNP	G	G	A			TCGA-AB-2864-03D-01W-0755-09	TCGA-AB-2864-11D-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	5	140244230	140244230	G	A	SNP	PCDHA13	NM_018904	human	genbank	54_36p	+1	reviewed	silent	c.2193	p.A731	0.239	NULL	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like	-	no_errors
LOC643562	643562	genome.wustl.edu	36	6	80831921	80831921	+	RNA	SNP	C	C	G			TCGA-AB-2864-03B-01W-0728-08	TCGA-AB-2864-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	80831921	80831921	C	G	SNP	LOC643562	XR_016539	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.818	-	-	-	pseudogene
OR5H6	79295	genome.wustl.edu	36	3	99466178	99466186	+	In_Frame_Del	DEL	TGTAACCAC	TGTAACCAC	-			TCGA-AB-2864-03B-01W-0728-08	TCGA-AB-2864-11B-01W-0729-08	TGTAACCAC	TGTAACCAC			TGTAACCAC	TGTAACCAC	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	99466178	99466186	TGTAACCAC	-	DEL	OR5H6	NM_001005479	human	genbank	54_36p	+1	provisional	in_frame_del	c.360_368	p.VTT124in_frame_del	0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
LOC643778	643778	genome.wustl.edu	36	6	129520673	129520673	+	RNA	SNP	A	A	G			TCGA-AB-2864-03B-01W-0728-08	TCGA-AB-2864-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	129520673	129520673	A	G	SNP	LOC643778	XR_017181	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
SMURF2	64750	genome.wustl.edu	36	17	60020040	60020040	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2864-03D-01W-0755-09	TCGA-AB-2864-11D-01W-0755-09	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	17	60020040	60020040	T	C	SNP	SMURF2	NM_022739	human	genbank	54_36p	-1	validated	missense	c.314	p.N105S	1.000	HMMSmart_C2,superfamily_C2_CaLB	HMMSmart_C2,superfamily_C2_CaLB,HMMPfam_C2,superfamily_WW_Rsp5_WWP,HMMSmart_WW,HMMPfam_WW,PatternScan_WW_DOMAIN_1,superfamily_HECT,HMMSmart_HECTc,HMMPfam_HECT	-	no_errors
FRG2B	441581	genome.wustl.edu	36	10	135290193	135290193	+	Missense_Mutation	SNP	A	A	T			TCGA-AB-2864-03B-01W-0728-08	TCGA-AB-2864-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	135290193	135290193	A	T	SNP	FRG2B	NM_001080998	human	genbank	54_36p	-1	provisional	missense	c.44	p.I15N	0.000	NULL	NULL	-	no_errors
CD99	4267	genome.wustl.edu	36	X	2619983	2619983	+	Silent	SNP	T	T	C			TCGA-AB-2864-03D-01W-0755-09	TCGA-AB-2864-11D-01W-0755-09	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	X	2619983	2619983	T	C	SNP	CD99	ENST00000381180	human	ensembl	54_36p	+1	known	silent	c.222	p.F74	0.036	NULL	NULL	-	no_errors
LILRB3	11025	genome.wustl.edu	36	19	59418053	59418053	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2864-03B-01W-0728-08	TCGA-AB-2864-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	59418053	59418053	C	T	SNP	LILRB3	NM_001081450	human	genbank	54_36p	-1	reviewed	missense	c.264	p.M88I	0.005	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors
LOC100132147	100132147	genome.wustl.edu	36	1	16733094	16733097	+	RNA	DEL	AAGG	AAGG	-			TCGA-AB-2864-03D-01W-0755-09	TCGA-AB-2864-11D-01W-0755-09	AAGG	AAGG			AAGG	AAGG	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	1	16733094	16733097	AAGG	-	DEL	LOC100132147	XR_038617	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.003:0.001:0.000:0.000	-	-	-	no_errors
LOC100131868	100131868	genome.wustl.edu	36	3	198846517	198846517	+	RNA	SNP	G	G	T			TCGA-AB-2864-03B-01W-0728-08	TCGA-AB-2864-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	198846517	198846517	G	T	SNP	LOC100131868	XR_038143	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.014	-	-	-	pseudogene
DNMT3A	1788	genome.wustl.edu	36	2	25310746	25310746	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2864-03D-01W-0755-09	TCGA-AB-2864-11D-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	2	25310746	25310746	C	T	SNP	DNMT3A	NM_022552	human	genbank	54_36p	-1	reviewed	missense	c.2645	p.R882H	1.000	superfamily_S-adenosyl-L-methionine-dependent methyltransferases	HMMPfam_PWWP,HMMSmart_SM00293,HMMPfam_DNA_methylase,superfamily_FYVE/PHD zinc finger,PatternScan_C5_MTASE_1,superfamily_S-adenosyl-L-methionine-dependent methyltransferases,superfamily_Tudor/PWWP/MBT	-	no_errors
ASB4	51666	genome.wustl.edu	36	7	94953408	94953408	+	Splice_Site	SNP	T	T	G			TCGA-AB-2864-03D-01W-0755-09	TCGA-AB-2864-11D-01W-0755-09	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	7	94953408	94953408	T	G	SNP	ASB4	NM_016116	human	genbank	54_36p	+1	reviewed	splice_site	c.187+2	e1+2	1.000	-	-	-	no_errors
CCDC37	348807	genome.wustl.edu	36	3	127621308	127621308	+	Silent	SNP	G	G	A			TCGA-AB-2864-03B-01W-0728-08	TCGA-AB-2864-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	127621308	127621308	G	A	SNP	CCDC37	NM_182628	human	genbank	54_36p	+1	validated	silent	c.870	p.E290	0.000	NULL	NULL	-	no_errors
IDH2	3418	genome.wustl.edu	36	15	88432842	88432842	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2864-03D-01W-0755-09	TCGA-AB-2864-11D-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	15	88432842	88432842	C	T	SNP	IDH2	NM_002168	human	genbank	54_36p	-1	reviewed	missense	c.515	p.R172K	1.000	HMMPfam_Iso_dh,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like	HMMPfam_Iso_dh,PatternScan_IDH_IMDH,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like	-	no_errors
LOC100132672	100132672	genome.wustl.edu	36	9	68791992	68791992	+	RNA	SNP	A	A	G			TCGA-AB-2864-03D-01W-0755-09	TCGA-AB-2864-11D-01W-0755-09	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	9	68791992	68791992	A	G	SNP	LOC100132672	XR_038504	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.998	-	-	-	pseudogene
LOC401875	401875	genome.wustl.edu	36	17	20457554	20457554	+	RNA	SNP	C	C	T			TCGA-AB-2864-03D-01W-0755-09	TCGA-AB-2864-11D-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	17	20457554	20457554	C	T	SNP	LOC401875	XR_042367	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.961	-	-	-	pseudogene
LOC100129958	100129958	genome.wustl.edu	36	6	162909595	162909600	+	In_Frame_Del	DEL	AGGAGA	AGGAGA	-			TCGA-AB-2864-03B-01W-0728-08	TCGA-AB-2864-11B-01W-0729-08	AGGAGA	AGGAGA			AGGAGA	AGGAGA	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	162909595	162909600	AGGAGA	-	DEL	LOC100129958	XM_001719102	human	genbank	54_36p	+1	model	in_frame_del	c.92_97	p.KE35in_frame_del	1.000:1.000:0.999:0.994:0.991:0.994	HMMPfam_Filament	HMMPfam_Filament,PatternScan_IF	-	no_errors
RIMBP3	85376	genome.wustl.edu	36	22	18837784	18837784	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2864-03D-01W-0755-09	TCGA-AB-2864-11D-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	22	18837784	18837784	G	A	SNP	RIMBP3	NM_015672	human	genbank	54_36p	-1	validated	missense	c.3518	p.S1173F	0.997	superfamily_Fibronectin type III	PatternScan_ALDEHYDE_DEHYDR_CYS,superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_2,superfamily_Fibronectin type III	-	no_errors
ZNF609	23060	genome.wustl.edu	36	15	62754945	62754947	+	In_Frame_Del	DEL	AAG	AAG	-			TCGA-AB-2864-03B-01W-0728-08	TCGA-AB-2864-11B-01W-0729-08	AAG	AAG			AAG	AAG	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	62754945	62754947	AAG	-	DEL	ZNF609	NM_015042	human	genbank	54_36p	+1	provisional	in_frame_del	c.2839_2841	p.K948in_frame_del	0.979:1.000:1.000	NULL	HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
LOC387745	387745	genome.wustl.edu	36	11	3388081	3388081	+	RNA	SNP	C	C	T			TCGA-AB-2864-03B-01W-0728-08	TCGA-AB-2864-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	3388081	3388081	C	T	SNP	LOC387745	XR_016307	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.492	-	-	-	pseudogene
PPP2R2B	5521	genome.wustl.edu	36	5	145949924	145949924	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2864-03D-01W-0755-09	TCGA-AB-2864-11D-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	5	145949924	145949924	G	A	SNP	PPP2R2B	NM_181676	human	genbank	54_36p	-1	reviewed	missense	c.1120	p.R374C	1.000	superfamily_WD40 repeat-like	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_PP2A_B_N,PatternScan_PR55_1,HMMPfam_PP2A_B_subs_rcg,PatternScan_PR55_2,PatternScan_WD_REPEATS_1	-	no_errors
POLR1A	25885	genome.wustl.edu	36	2	86126274	86126274	+	Missense_Mutation	SNP	A	A	C			TCGA-AB-2864-03D-01W-0755-09	TCGA-AB-2864-11D-01W-0755-09	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	2	86126274	86126274	A	C	SNP	POLR1A	NM_015425	human	genbank	54_36p	-1	validated	missense	c.2863	p.F955V	1.000	superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase	HMMPfam_RNA_pol_Rpb1_2,HMMSmart_SM00663,HMMPfam_RNA_pol_Rpb1_3,HMMPfam_RNA_pol_Rpb1_1,HMMPfam_RNA_pol_Rpb1_5,HMMPfam_RNA_pol_Rpb1_4,superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase	-	no_errors
ASXL1	171023	genome.wustl.edu	36	20	30486932	30486933	+	Frame_Shift_Ins	INS	-	-	ACCA			TCGA-AB-2864-03D-01W-0755-09	TCGA-AB-2864-11D-01W-0755-09	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	20	30486932	30486933	-	ACCA	INS	ASXL1	NM_015338	human	genbank	54_36p	+1	reviewed	frame_shift_ins	c.2756_2757	p.S921fs	0.000:0.000	NULL	NULL	-	no_errors
TRIM7	81786	genome.wustl.edu	36	5	180554960	180554960	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2864-03D-01W-0755-09	TCGA-AB-2864-11D-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	5	180554960	180554960	G	A	SNP	TRIM7	NM_203293	human	genbank	54_36p	-1	reviewed	missense	c.1348	p.R450W	0.013	HMMPfam_SPRY,HMMSmart_SM00449	superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMPfam_zf-B_box,HMMSmart_SM00336,HMMSmart_SM00589,HMMPfam_SPRY,HMMSmart_SM00449	-	no_errors
AOC2	314	genome.wustl.edu	36	17	38254731	38254731	+	Missense_Mutation	SNP	T	T	G			TCGA-AB-2864-03D-01W-0755-09	TCGA-AB-2864-11D-01W-0755-09	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	17	38254731	38254731	T	G	SNP	AOC2	NM_009590	human	genbank	54_36p	+1	reviewed	missense	c.1691	p.V564G	0.002	superfamily_Amine oxidase catalytic domain,HMMPfam_Cu_amine_oxid	superfamily_Amine oxidase N-terminal region,HMMPfam_Cu_amine_oxidN2,HMMPfam_Cu_amine_oxidN3,superfamily_Amine oxidase catalytic domain,HMMPfam_Cu_amine_oxid,PatternScan_COPPER_AMINE_OXID_1,PatternScan_COPPER_AMINE_OXID_2	-	no_errors
VAV3	10451	genome.wustl.edu	36	1	108093622	108093622	+	Missense_Mutation	SNP	A	A	T			TCGA-AB-2864-03B-01W-0728-08	TCGA-AB-2864-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	108093622	108093622	A	T	SNP	VAV3	NM_006113	human	genbank	54_36p	-1	reviewed	missense	c.1377	p.D459E	1.000	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233	HMMPfam_CH,superfamily_Calponin-homology domain CH-domain,HMMSmart_SM00033,superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,PatternScan_DH_1,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_2,superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2,HMMPfam_SH3_1	-	no_errors
CASZ1	54897	genome.wustl.edu	36	1	10638385	10638385	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2864-03D-01W-0755-09	TCGA-AB-2864-11D-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	1	10638385	10638385	C	T	SNP	CASZ1	NM_001079843	human	genbank	54_36p	-1	validated	missense	c.1573	p.G525S	1.000	NULL	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
LOC644153	644153	genome.wustl.edu	36	15	30465343	30465343	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2864-03D-01W-0755-09	TCGA-AB-2864-11D-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	15	30465343	30465343	G	T	SNP	LOC644153	XM_001718804	human	genbank	54_36p	+1	model	missense	c.273	p.L91F	1.000	HMMPfam_GED,HMMSmart_SM00302	HMMPfam_GED,HMMSmart_SM00302	-	pseudogene
GRIN3B	116444	genome.wustl.edu	36	19	955896	955897	+	Frame_Shift_Ins	INS	-	-	CGTT			TCGA-AB-2864-03D-01W-0755-09	TCGA-AB-2864-11D-01W-0755-09	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	19	955896	955897	-	CGTT	INS	GRIN3B	NM_138690	human	genbank	54_36p	+1	provisional	frame_shift_ins	c.1396_1397	p.G466fs	0.784:0.757	superfamily_SSF53822,superfamily_SSF53850,HMMSmart_PBPe,HMMPfam_Lig_chan-Glu_bd	superfamily_SSF53822,superfamily_SSF53850,HMMSmart_PBPe,HMMPfam_Lig_chan-Glu_bd,HMMPfam_Lig_chan	-	no_errors
LOC130728	130728	genome.wustl.edu	36	2	49960073	49960074	+	RNA	INS	-	-	AAAC			TCGA-AB-2864-03D-01W-0755-09	TCGA-AB-2864-11D-01W-0755-09	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	2	49960073	49960074	-	AAAC	INS	LOC130728	XR_017361	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.686:0.699	-	-	-	pseudogene
GLB1L3	112937	genome.wustl.edu	36	11	133658931	133658931	+	Silent	SNP	C	C	G			TCGA-AB-2864-03D-01W-0755-09	TCGA-AB-2864-11D-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	11	133658931	133658931	C	G	SNP	GLB1L3	NM_001080407	human	genbank	54_36p	+1	validated	silent	c.741	p.P247	0.610	superfamily_(Trans)glycosidases,HMMPfam_Glyco_hydro_35	superfamily_(Trans)glycosidases,HMMPfam_Glyco_hydro_35	-	no_errors
