Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
LOC257039	257039	genome.wustl.edu	36	3	145057398	145057398	+	Frame_Shift_Del	DEL	T	T	-			TCGA-AB-2874-03A-01W-0732-08	TCGA-AB-2874-11A-01W-0732-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	145057398	145057398	T	-	DEL	LOC257039	XM_172230	human	genbank	54_36p	-1	model	frame_shift_del	c.542	p.E181fs	1.000	HMMPfam_Ribosomal_S17e	HMMPfam_Ribosomal_S17e	-	no_errors
SLITRK1	114798	genome.wustl.edu	36	13	83352095	83352095	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2874-03A-01W-0732-08	TCGA-AB-2874-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	13	83352095	83352095	G	T	SNP	SLITRK1	NM_052910	human	genbank	54_36p	-1	validated	missense	c.1549	p.Q517K	1.000	superfamily_SSF52058	superfamily_SSF52058,HMMSmart_LRR_TYP,HMMPfam_LRR_1,HMMSmart_LRRCT,HMMSmart_LRRNT	-	no_errors
CCDC60	160777	genome.wustl.edu	36	12	118453114	118453114	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2874-03A-01W-0732-08	TCGA-AB-2874-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	118453114	118453114	G	A	SNP	CCDC60	NM_178499	human	genbank	54_36p	+1	validated	missense	c.1414	p.A472T	0.954	NULL	NULL	-	no_errors
EPPK1	83481	genome.wustl.edu	36	8	145012694	145012694	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2874-03A-01W-0732-08	TCGA-AB-2874-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	145012694	145012694	C	T	SNP	EPPK1	NM_031308	human	genbank	54_36p	-1	provisional	missense	c.6641	p.R2214H	0.011	HMMPfam_Plectin,HMMSmart_SM00250,superfamily_Plakin repeat	HMMPfam_Plectin,HMMSmart_SM00250,superfamily_Plakin repeat	-	no_stop_codon:bad_bp_length_for_coding_region
FCGBP	8857	genome.wustl.edu	36	19	45075959	45075959	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2874-03A-01W-0732-08	TCGA-AB-2874-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	45075959	45075959	C	G	SNP	FCGBP	NM_003890	human	genbank	54_36p	-1	validated	missense	c.9491	p.C3164S	1.000	superfamily_Cysrich_TIL,HMMPfam_TIL	HMMSmart_VWC,HMMPfam_VWD,HMMSmart_VWD,superfamily_Cysrich_TIL,HMMPfam_TIL_assoc,HMMSmart_FOLN,HMMPfam_C8,HMMPfam_TIL	-	no_errors
H6PD	9563	genome.wustl.edu	36	1	9227566	9227573	+	Splice_Site	DEL	CCCAGGCA	CCCAGGCA	-			TCGA-AB-2874-03A-01W-0732-08	TCGA-AB-2874-11A-01W-0732-08	CCCAGGCA	CCCAGGCA			CCCAGGCA	CCCAGGCA	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	9227566	9227573	CCCAGGCA	-	DEL	H6PD	NM_004285	human	genbank	54_36p	+1	reviewed	splice_site_del	c.1-5_-2	e1-1	0.209:0.298:0.377:0.388:0.397:0.276:0.012:0.011	-	-	-	no_errors
GREM2	64388	genome.wustl.edu	36	1	238723327	238723327	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2874-03A-01W-0732-08	TCGA-AB-2874-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	238723327	238723327	G	T	SNP	GREM2	NM_022469	human	genbank	54_36p	-1	reviewed	missense	c.72	p.N24K	1.000	NULL	HMMPfam_DAN,HMMSmart_CT	-	no_errors
CEBPA	1050	genome.wustl.edu	36	19	38484263	38484263	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2874-03A-01W-0732-08	TCGA-AB-2874-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	38484263	38484263	G	A	SNP	CEBPA	NM_004364	human	genbank	54_36p	-1	reviewed	missense	c.898	p.R300C	1.000	HMMSmart_BRLZ,HMMPfam_bZIP_2	HMMSmart_BRLZ,PatternScan_BZIP_BASIC,HMMPfam_bZIP_2	-	no_errors
LOC642538	642538	genome.wustl.edu	36	10	81781886	81781886	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2874-03A-01W-0732-08	TCGA-AB-2874-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	81781886	81781886	G	A	SNP	LOC642538	XM_926027	human	genbank	54_36p	-1	model	missense	c.244	p.P82S	0.907	HMMPfam_Sas10_Utp3	HMMPfam_Sas10_Utp3	-	no_errors
ZNF683	257101	genome.wustl.edu	36	1	26563874	26563897	+	In_Frame_Del	DEL	CCACCGAGCGCTGGGGTGCCCCAG	CCACCGAGCGCTGGGGTGCCCCAG	-			TCGA-AB-2874-03A-01W-0732-08	TCGA-AB-2874-11A-01W-0732-08	CCACCGAGCGCTGGGGTGCCCCAG	CCACCGAGCGCTGGGGTGCCCCAG			CCACCGAGCGCTGGGGTGCCCCAG	CCACCGAGCGCTGGGGTGCCCCAG	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	26563874	26563897	CCACCGAGCGCTGGGGTGCCCCAG	-	DEL	ZNF683	NM_173574	human	genbank	54_36p	-1	validated	in_frame_del	c.750_727	p.LGHPSARW243in_frame_del	0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.032:0.013:0.002:0.003:0.001:0.000:0.001:0.000:0.002:0.000	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
FAM39B	375260	genome.wustl.edu	36	15	100332822	100332822	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2874-03A-01W-0732-08	TCGA-AB-2874-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	100332822	100332822	G	A	SNP	FAM39B	ENST00000354296	human	ensembl	54_36p	+1	known	missense	c.1126	p.G376S	1.000	NULL	NULL	-	no_errors
WT1	7490	genome.wustl.edu	36	11	32370142	32370142	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2874-03A-01W-0732-08	TCGA-AB-2874-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	32370142	32370142	G	A	SNP	WT1	NM_024426	human	genbank	54_36p	-1	reviewed	missense	c.1384	p.R462W	1.000	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_WT1,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
PSAT1P1	137133	genome.wustl.edu	36	8	50815532	50815532	+	RNA	SNP	G	G	A			TCGA-AB-2874-03A-01W-0732-08	TCGA-AB-2874-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	50815532	50815532	G	A	SNP	C8orf62	XR_016569	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.995	-	-	-	pseudogene
OR6B2	389090	genome.wustl.edu	36	2	240617625	240617625	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2874-03A-01W-0732-08	TCGA-AB-2874-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	240617625	240617625	C	A	SNP	OR6B2	NM_001005853	human	genbank	54_36p	-1	provisional	missense	c.895	p.D299Y	0.046	superfamily_Family A G protein-coupled receptor-like	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
AURKC	6795	genome.wustl.edu	36	19	62435849	62435849	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2874-03A-01W-0732-08	TCGA-AB-2874-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	62435849	62435849	C	T	SNP	AURKC	NM_001015878	human	genbank	54_36p	+1	reviewed	missense	c.424	p.R142C	0.983	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
GPATCH8	23131	genome.wustl.edu	36	17	39831216	39831216	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2874-03A-01W-0732-08	TCGA-AB-2874-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	39831216	39831216	G	A	SNP	GPATCH8	NM_001002909	human	genbank	54_36p	-1	validated	missense	c.3755	p.T1252I	1.000	NULL	HMMSmart_SM00443,HMMPfam_G-patch,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
MEFV	4210	genome.wustl.edu	36	16	3239463	3239463	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2874-03A-01W-0732-08	TCGA-AB-2874-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	3239463	3239463	C	T	SNP	MEFV	NM_000243	human	genbank	54_36p	-1	reviewed	missense	c.1229	p.R410H	0.025	HMMPfam_zf-B_box,HMMSmart_SM00336,superfamily_B-box zinc-binding domain	HMMPfam_zf-B_box,HMMSmart_SM00336,HMMPfam_SPRY,HMMPfam_PAAD_DAPIN,HMMSmart_SM00589,superfamily_DEATH domain,HMMSmart_SM00449,superfamily_B-box zinc-binding domain	-	no_errors
MST1P9	11223	genome.wustl.edu	36	1	16960129	16960133	+	Frame_Shift_Del	DEL	GTGCT	GTGCT	-			TCGA-AB-2874-03A-01W-0732-08	TCGA-AB-2874-11A-01W-0732-08	GTGCT	GTGCT			GTGCT	GTGCT	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	16960129	16960133	GTGCT	-	DEL	MSTP9	ENST00000334998	human	ensembl	54_36p	-1	known	frame_shift_del	c.123_119	p.Q40fs	0.887:0.863:0.855:0.990:0.991	HMMPfam_PAN_1,HMMSmart_SM00473,superfamily_Hairpin loop containing domain-like	HMMPfam_Kringle,HMMSmart_SM00130,HMMPfam_Trypsin,HMMSmart_SM00020,HMMPfam_PAN_1,HMMSmart_SM00473,superfamily_Trypsin-like serine proteases,superfamily_Kringle-like,PatternScan_KRINGLE_1,superfamily_Hairpin loop containing domain-like	-	no_errors
ETV3	2117	genome.wustl.edu	36	1	155371935	155371935	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2874-03A-01W-0732-08	TCGA-AB-2874-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	155371935	155371935	C	T	SNP	ETV3	NM_005240	human	genbank	54_36p	-1	validated	missense	c.236	p.R79K	1.000	superfamily_SSF46785,HMMPfam_Ets,HMMSmart_ETS	superfamily_SSF46785,HMMPfam_Ets,HMMSmart_ETS,PatternScan_ETS_DOMAIN_1,PatternScan_ETS_DOMAIN_2	-	no_errors
SMG1	23049	genome.wustl.edu	36	16	18760441	18760441	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2874-03A-01W-0732-08	TCGA-AB-2874-11A-01W-0732-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	18760441	18760441	A	G	SNP	SMG1	NM_015092	human	genbank	54_36p	-1	reviewed	missense	c.6643	p.F2215L	1.000	HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,superfamily_Protein kinase-like (PK-like)	HMMPfam_HEAT,HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,HMMPfam_FATC,superfamily_Protein kinase-like (PK-like),superfamily_ARM repeat,PatternScan_PI3_4_KINASE_2	-	no_errors
PDCD2L	84306	genome.wustl.edu	36	19	39596586	39596586	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2874-03A-01W-0732-08	TCGA-AB-2874-11A-01W-0732-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	39596586	39596586	T	C	SNP	PDCD2L	NM_032346	human	genbank	54_36p	+1	provisional	missense	c.791	p.I264T	1.000	HMMPfam_PDCD2_C	HMMPfam_PDCD2_C	-	no_errors
ARMC3	219681	genome.wustl.edu	36	10	23359678	23359678	+	Silent	SNP	C	C	A			TCGA-AB-2874-03A-01W-0732-08	TCGA-AB-2874-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	23359678	23359678	C	A	SNP	ARMC3	NM_173081	human	genbank	54_36p	+1	validated	silent	c.2193	p.T731	1.000	NULL	superfamily_ARM repeat,HMMPfam_Arm,HMMSmart_SM00185	-	no_errors
IDH2	3418	genome.wustl.edu	36	15	88432938	88432938	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2874-03A-01W-0732-08	TCGA-AB-2874-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	88432938	88432938	C	T	SNP	IDH2	NM_002168	human	genbank	54_36p	-1	reviewed	missense	c.419	p.R140Q	1.000	HMMPfam_Iso_dh,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like	HMMPfam_Iso_dh,PatternScan_IDH_IMDH,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like	-	no_errors
