Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
ANGPTL7	10218	genome.wustl.edu	36	1	11177658	11177658	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2883-03A-01W-0732-08	TCGA-AB-2883-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	11177658	11177658	C	A	SNP	ANGPTL7	NM_021146	human	genbank	54_36p	+1	provisional	missense	c.1032	p.F344L	0.993	superfamily_Fibrinogen C-terminal domain-like	HMMSmart_SM00186,superfamily_Fibrinogen C-terminal domain-like,HMMPfam_Fibrinogen_C	-	no_errors
LOC100131868	100131868	genome.wustl.edu	36	3	198846517	198846517	+	RNA	SNP	G	G	T			TCGA-AB-2883-03A-01W-0732-08	TCGA-AB-2883-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	198846517	198846517	G	T	SNP	LOC100131868	XR_038143	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.014	-	-	-	pseudogene
FMNL1	752	genome.wustl.edu	36	17	40677383	40677383	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2883-03A-01W-0732-08	TCGA-AB-2883-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	40677383	40677383	C	A	SNP	FMNL1	NM_005892	human	genbank	54_36p	+1	reviewed	missense	c.2506	p.Q836K	1.000	HMMSmart_SM00498,HMMPfam_FH2,superfamily_Formin homology 2 domain (FH2 domain)	HMMSmart_SM00498,HMMPfam_Drf_FH3,HMMPfam_Drf_GBD,HMMPfam_FH2,superfamily_Formin homology 2 domain (FH2 domain)	-	no_errors
LOC389000	389000	genome.wustl.edu	36	2	91440296	91440296	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2883-03A-01W-0732-08	TCGA-AB-2883-11A-01W-0732-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	91440296	91440296	A	G	SNP	LOC389000	XM_371534	human	genbank	54_36p	-1	model	missense	c.1130	p.L377P	1.000	HMMPfam_Na_H_Exchanger	HMMPfam_Na_H_Exchanger	-	pseudogene
MAPKAPK5	8550	genome.wustl.edu	36	12	110788399	110788399	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2883-03A-01W-0732-08	TCGA-AB-2883-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	110788399	110788399	G	A	SNP	MAPKAPK5	NM_139078	human	genbank	54_36p	+1	reviewed	missense	c.167	p.R56H	1.000	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST	-	no_errors
SLIT2	9353	genome.wustl.edu	36	4	20161546	20161546	+	Splice_Site	SNP	A	A	T			TCGA-AB-2883-03A-01W-0732-08	TCGA-AB-2883-11A-01W-0732-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	20161546	20161546	A	T	SNP	SLIT2	NM_004787	human	genbank	54_36p	+1	provisional	splice_site	c.2490-2	e25-2	0.997	-	-	-	no_errors
BAIAP2	10458	genome.wustl.edu	36	17	76692462	76692462	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2883-03A-01W-0732-08	TCGA-AB-2883-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	76692462	76692462	C	A	SNP	BAIAP2	NM_017451	human	genbank	54_36p	+1	reviewed	missense	c.1025	p.P342H	1.000	NULL	HMMPfam_IMD,superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_2	-	no_errors
CLDN16	10686	genome.wustl.edu	36	3	191610409	191610409	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2883-03A-01W-0732-08	TCGA-AB-2883-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	191610409	191610409	C	A	SNP	CLDN16	NM_006580	human	genbank	54_36p	+1	reviewed	missense	c.808	p.P270T	0.392	NULL	HMMPfam_PMP22_Claudin,PatternScan_CLAUDIN	-	no_errors
TSC2	7249	genome.wustl.edu	36	16	2055619	2055619	+	Silent	SNP	G	G	A			TCGA-AB-2883-03A-01W-0732-08	TCGA-AB-2883-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	2055619	2055619	G	A	SNP	TSC2	NM_000548	human	genbank	54_36p	+1	reviewed	silent	c.1698	p.G566	0.999	superfamily_ARM repeat,HMMPfam_Tuberin	superfamily_ARM repeat,HMMPfam_Tuberin,superfamily_Rap/Ran-GAP (Pfam 02145),HMMPfam_Rap_GAP	-	no_errors
TPTE	7179	genome.wustl.edu	36	21	9964796	9964798	+	In_Frame_Del	DEL	CTT	CTT	-			TCGA-AB-2883-03A-01W-0732-08	TCGA-AB-2883-11A-01W-0732-08	CTT	CTT			CTT	CTT	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	21	9964796	9964798	CTT	-	DEL	TPTE	NM_199261	human	genbank	54_36p	-1	validated	in_frame_del	c.662_660	p.R222in_frame_del	1.000:1.000:1.000	superfamily_Voltage-gated potassium channels	superfamily_Voltage-gated potassium channels,superfamily_(Phosphotyrosine protein) phosphatases II,PatternScan_TYR_PHOSPHATASE_1,HMMPfam_PTEN_C2,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	-	no_errors
uc003eyf.1	0	genome.wustl.edu	36	3	151823556	151823556	+	Silent	SNP	A	A	G			TCGA-AB-2883-03A-01W-0732-08	TCGA-AB-2883-11A-01W-0732-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	151823556	151823556	A	G	SNP	uc003eyf.1	ENST00000361622	human	ensembl	54_36p	+1	known	silent	c.285	p.V95	1.000	HMMPfam_SelT	HMMPfam_SelT	-	no_errors
ENSG00000204813	0	genome.wustl.edu	36	9	44814142	44814142	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2883-03A-01W-0732-08	TCGA-AB-2883-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	44814142	44814142	G	T	SNP	ENSG00000204813	ENST00000377544	human	ensembl	54_36p	+1	known	missense	c.139	p.A47S	0.000	NULL	NULL	-	no_start_codon:no_stop_codon
