Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
EDEM2	55741	genome.wustl.edu	36	20	33198625	33198625	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2884-03A-01W-0732-08	TCGA-AB-2884-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	20	33198625	33198625	G	A	SNP	EDEM2	NM_018217	human	genbank	54_36p	-1	validated	missense	c.98	p.A33V	1.000	superfamily_Seven-hairpin glycosidases	superfamily_Seven-hairpin glycosidases,HMMPfam_Glyco_hydro_47	-	no_errors
SEZ6L	23544	genome.wustl.edu	36	22	25077200	25077200	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2884-03A-01W-0732-08	TCGA-AB-2884-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	22	25077200	25077200	C	T	SNP	SEZ6L	NM_021115	human	genbank	54_36p	+1	validated	missense	c.2590	p.H864Y	1.000	superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032	superfamily_Spermadhesin CUB domain,HMMSmart_SM00042,superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_CUB	-	no_errors
FRG1B	284802	genome.wustl.edu	36	20	28237754	28237754	+	Splice_Site	SNP	G	G	T			TCGA-AB-2884-03A-01W-0732-08	TCGA-AB-2884-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	20	28237754	28237754	G	T	SNP	FRG1B	ENST00000278882	human	ensembl	54_36p	+1	known	splice_site	c.116+1	e2+1	1.000	-	-	-	no_errors
LOC729835	729835	genome.wustl.edu	36	17	30728535	30728535	+	RNA	SNP	G	G	T			TCGA-AB-2884-03A-01W-0732-08	TCGA-AB-2884-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	30728535	30728535	G	T	SNP	LOC729835	XR_016020	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.447	-	-	-	pseudogene
SEC23A	10484	genome.wustl.edu	36	14	38631567	38631567	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2884-03A-01W-0732-08	TCGA-AB-2884-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	14	38631567	38631567	C	A	SNP	SEC23A	NM_006364	human	genbank	54_36p	-1	reviewed	missense	c.295	p.A99S	1.000	superfamily_Znf_Sec23_Sec24,superfamily_SSF81995	HMMPfam_zf-Sec23_Sec24,superfamily_Znf_Sec23_Sec24,HMMPfam_Sec23_trunk,HMMPfam_Sec23_helical,superfamily_Sec23_helical,HMMPfam_Gelsolin,HMMPfam_Sec23_BS,superfamily_SSF53300,superfamily_SSF81995,superfamily_SSF82754	-	no_errors
NINL	22981	genome.wustl.edu	36	20	25405050	25405055	+	In_Frame_Del	DEL	CTCCCA	CTCCCA	-			TCGA-AB-2884-03A-01W-0732-08	TCGA-AB-2884-11A-01W-0732-08	CTCCCA	CTCCCA			CTCCCA	CTCCCA	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	20	25405050	25405055	CTCCCA	-	DEL	NLP	NM_025176	human	genbank	54_36p	-1	validated	in_frame_del	c.2877_2872	p.WE958in_frame_del	0.000:0.000:0.000:0.001:0.000:0.000	NULL	HMMSmart_EFh,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_SSF47473	-	no_errors
IFI44	10561	genome.wustl.edu	36	1	78897616	78897616	+	Missense_Mutation	SNP	A	A	T			TCGA-AB-2884-03A-01W-0732-08	TCGA-AB-2884-11A-01W-0732-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	78897616	78897616	A	T	SNP	IFI44	NM_006417	human	genbank	54_36p	+1	validated	missense	c.872	p.H291L	0.000	superfamily_SSF52540	superfamily_SSF52540	-	no_errors
DNMT3A	1788	genome.wustl.edu	36	2	25310746	25310746	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2884-03A-01W-0732-08	TCGA-AB-2884-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	25310746	25310746	C	T	SNP	DNMT3A	NM_022552	human	genbank	54_36p	-1	reviewed	missense	c.2645	p.R882H	1.000	superfamily_S-adenosyl-L-methionine-dependent methyltransferases	HMMPfam_PWWP,HMMSmart_SM00293,HMMPfam_DNA_methylase,superfamily_FYVE/PHD zinc finger,PatternScan_C5_MTASE_1,superfamily_S-adenosyl-L-methionine-dependent methyltransferases,superfamily_Tudor/PWWP/MBT	-	no_errors
LOC642538	642538	genome.wustl.edu	36	10	81781823	81781823	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2884-03A-01W-0732-08	TCGA-AB-2884-11A-01W-0732-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	81781823	81781823	T	C	SNP	LOC642538	XM_926027	human	genbank	54_36p	-1	model	missense	c.307	p.K103E	0.988	NULL	HMMPfam_Sas10_Utp3	-	no_errors
IDH1	3417	genome.wustl.edu	36	2	208821357	208821357	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2884-03A-01W-0732-08	TCGA-AB-2884-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	208821357	208821357	C	T	SNP	IDH1	NM_005896	human	genbank	54_36p	-1	reviewed	missense	c.395	p.R132H	1.000	HMMPfam_Iso_dh,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like	HMMPfam_Iso_dh,PatternScan_IDH_IMDH,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like	-	no_errors
NPM1	4869	genome.wustl.edu	36	5	170770152	170770153	+	Frame_Shift_Ins	INS	-	-	TCTG			TCGA-AB-2884-03A-01W-0732-08	TCGA-AB-2884-11A-01W-0732-08	-	-			-	-	Verified	Valid	Somatic		Capture				Illumina GAIIx	5	170770152	170770153	0	TCTG	INS	NPM1	NM_002520	human	genbank	54_36p	1	validated	frame_shift_ins	c.863_864	p.W288fs	1.000:1.000	NULL	Nucleoplasmin;HMMPfam_Nucleoplasmin;Nucleoplasmin-like	-	NA
