Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
PPP1R3D	5509	genome.wustl.edu	36	20	57947840	57947840	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2887-03A-01W-0732-08	TCGA-AB-2887-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	20	57947840	57947840	C	T	SNP	PPP1R3D	NM_006242	human	genbank	54_36p	-1	reviewed	missense	c.542	p.R181H	1.000	HMMPfam_CBM_21	HMMPfam_CBM_21	-	no_errors
PCDHA7	56141	genome.wustl.edu	36	5	140196269	140196269	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2887-03A-01W-0732-08	TCGA-AB-2887-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	140196269	140196269	C	T	SNP	PCDHA7	NM_018910	human	genbank	54_36p	+1	reviewed	missense	c.2117	p.A706V	0.997	NULL	superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors
TMEM108	66000	genome.wustl.edu	36	3	134597446	134597446	+	Missense_Mutation	SNP	A	A	T			TCGA-AB-2887-03A-01W-0732-08	TCGA-AB-2887-11A-01W-0732-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	134597446	134597446	A	T	SNP	TMEM108	NM_023943	human	genbank	54_36p	+1	validated	missense	c.1654	p.T552S	1.000	NULL	PatternScan_TONB_DEPENDENT_REC_1	-	no_errors
ACAT1	38	genome.wustl.edu	36	11	107514954	107514954	+	Silent	SNP	T	T	G			TCGA-AB-2887-03A-01W-0732-08	TCGA-AB-2887-11A-01W-0732-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	107514954	107514954	T	G	SNP	ACAT1	NM_000019	human	genbank	54_36p	+1	reviewed	silent	c.555	p.T185	0.739	superfamily_Thiolase-like,HMMPfam_Thiolase_N	superfamily_Thiolase-like,HMMPfam_Thiolase_N,PatternScan_THIOLASE_1,HMMPfam_Thiolase_C,PatternScan_THIOLASE_2,PatternScan_THIOLASE_3	-	no_errors
DNMT3A	1788	genome.wustl.edu	36	2	25317033	25317033	+	Missense_Mutation	SNP	G	A	A			TCGA-AB-2887-03A-01W-0732-08	TCGA-AB-2887-11A-01W-0732-08	G	A			G	G	Verified	Valid	Somatic		Capture				Illumina GAIIx	2	25317033	25317033	G	A	SNP	DNMT3A	NM_022552	human	genbank	54_36p	-1	reviewed	missense	c.2153	p.P718L	1	HMMPfam_DNA_methylase	HMMPfam_PWWP;HMMPfam_DNA_methylase;superfamily_FYVE/PHD zinc finger;superfamily_S-adenosyl-L-methionine-dependent methyltransferases;superfamily_Tudor/PWWP/MBT	-	NA
NRAS	4893	genome.wustl.edu	36	1	115060270	115060270	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2887-03A-01W-0732-08	TCGA-AB-2887-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	115060270	115060270	C	T	SNP	NRAS	NM_002524	human	genbank	54_36p	-1	reviewed	missense	c.35	p.G12D	1.000	HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
DYNC2H1	79659	genome.wustl.edu	36	11	102544755	102544755	+	Silent	SNP	T	T	C			TCGA-AB-2887-03A-01W-0732-08	TCGA-AB-2887-11A-01W-0732-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	102544755	102544755	T	C	SNP	DYNC2H1	NM_001080463	human	genbank	54_36p	+1	provisional	silent	c.4824	p.D1608	0.999	NULL	HMMSmart_SM00382,HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
IDH1	3417	genome.wustl.edu	36	2	208821358	208821358	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2887-03A-01W-0732-08	TCGA-AB-2887-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	208821358	208821358	G	A	SNP	IDH1	NM_005896	human	genbank	54_36p	-1	reviewed	missense	c.394	p.R132C	1.000	HMMPfam_Iso_dh,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like	HMMPfam_Iso_dh,PatternScan_IDH_IMDH,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like	-	no_errors
BDKRB2	624	genome.wustl.edu	36	14	95776976	95776976	+	Silent	SNP	G	G	A			TCGA-AB-2887-03A-01W-0732-08	TCGA-AB-2887-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	14	95776976	95776976	G	A	SNP	BDKRB2	NM_000623	human	genbank	54_36p	+1	reviewed	silent	c.558	p.L186	0.046	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
FGD6	55785	genome.wustl.edu	36	12	94128011	94128011	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2887-03A-01W-0732-08	TCGA-AB-2887-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	94128011	94128011	C	T	SNP	FGD6	NM_018351	human	genbank	54_36p	-1	validated	missense	c.1180	p.A394T	0.000	NULL	superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,HMMSmart_SM00064,HMMPfam_FYVE,superfamily_FYVE/PHD zinc finger,PatternScan_C_TYPE_LECTIN_1	-	no_errors
CYP4F2	8529	genome.wustl.edu	36	19	15861324	15861324	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2887-03A-01W-0732-08	TCGA-AB-2887-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	15861324	15861324	C	T	SNP	CYP4F2	NM_001082	human	genbank	54_36p	-1	reviewed	missense	c.827	p.R276H	0.027	superfamily_Cytochrome_P450,HMMPfam_p450	superfamily_Cytochrome_P450,HMMPfam_p450,PatternScan_CYTOCHROME_P450	-	no_errors
ABCC3	8714	genome.wustl.edu	36	17	46115973	46115973	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2887-03A-01W-0732-08	TCGA-AB-2887-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	46115973	46115973	C	T	SNP	ABCC3	NM_003786	human	genbank	54_36p	+1	reviewed	missense	c.3811	p.P1271S	1.000	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,HMMPfam_ABC_membrane,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1	-	no_errors
PRKD3	23683	genome.wustl.edu	36	2	37333846	37333846	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2887-03A-01W-0732-08	TCGA-AB-2887-11A-01W-0732-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	37333846	37333846	T	C	SNP	PRKD3	NM_005813	human	genbank	54_36p	-1	reviewed	missense	c.2651	p.D884G	1.000	NULL	superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
BRWD3	254065	genome.wustl.edu	36	X	79875620	79875620	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2887-03A-01W-0732-08	TCGA-AB-2887-11A-01W-0732-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	79875620	79875620	T	C	SNP	BRWD3	NM_153252	human	genbank	54_36p	-1	validated	missense	c.1118	p.N373S	1.000	superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase,HMMSmart_SM00320,HMMPfam_WD40	HMMSmart_SM00320,HMMPfam_WD40,superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase,PatternScan_WD_REPEATS_1,superfamily_Bromodomain,HMMSmart_SM00297,HMMPfam_Bromodomain	-	no_errors
CDC14B	8555	genome.wustl.edu	36	9	98368919	98368919	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-2887-03A-01W-0732-08	TCGA-AB-2887-11A-01W-0732-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	98368919	98368919	T	A	SNP	CDC14B	NM_001077181	human	genbank	54_36p	-1	reviewed	missense	c.1	p.M1L	0.999	NULL	superfamily_SSF52799,HMMPfam_DSPc,PatternScan_TYR_PHOSPHATASE_1	-	no_errors
LAMA2	3908	genome.wustl.edu	36	6	129746059	129746059	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2887-03A-01W-0732-08	TCGA-AB-2887-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	129746059	129746059	C	T	SNP	LAMA2	NM_000426	human	genbank	54_36p	+1	reviewed	missense	c.5059	p.R1687W	1.000	superfamily_ConA_like_lec_gl,HMMPfam_Laminin_I	HMMSmart_LamNT,HMMPfam_Laminin_N,superfamily_Gal_bind_like,HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,superfamily_ConA_like_lec_gl,PatternScan_EGF_1,PatternScan_EGF_LAM_1,superfamily_SSF57196,PatternScan_EGF_2,HMMSmart_LamB,HMMPfam_Laminin_B,HMMPfam_Laminin_I,superfamily_SSF56399,HMMPfam_Laminin_II,HMMSmart_LamG,HMMPfam_Laminin_G_1,HMMPfam_Laminin_G_2	-	no_errors
TMEM18	129787	genome.wustl.edu	36	2	667320	667320	+	Missense_Mutation	SNP	G	G	C			TCGA-AB-2887-03A-01W-0732-08	TCGA-AB-2887-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	667320	667320	G	C	SNP	TMEM18	NM_152834	human	genbank	54_36p	-1	validated	missense	c.26	p.S9C	0.002	NULL	NULL	-	no_errors
CES1P1	51716	genome.wustl.edu	36	16	54358799	54358799	+	RNA	SNP	G	G	A			TCGA-AB-2887-03A-01W-0732-08	TCGA-AB-2887-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	54358799	54358799	G	A	SNP	CES4	NR_003276	human	genbank	54_36p	+1	validated	rna	NULL	NULL	0.000	-	-	-	pseudogene
EZH2	2146	genome.wustl.edu	36	7	148137376	148137376	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2887-03A-01W-0732-08	TCGA-AB-2887-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	148137376	148137376	C	T	SNP	EZH2	NM_004456	human	genbank	54_36p	-1	reviewed	missense	c.2069	p.R690H	1.000	HMMPfam_SET,HMMSmart_SET,superfamily_SSF82199	HMMSmart_SANT,HMMPfam_SET,HMMSmart_SET,superfamily_SSF82199	-	no_errors
