Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
ANKRD24	170961	genome.wustl.edu	36	19	4159788	4159788	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2892-03A-01W-0733-08	TCGA-AB-2892-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	4159788	4159788	C	T	SNP	ANKRD24	NM_133475	human	genbank	54_36p	+1	provisional	missense	c.860	p.A287V	0.467	NULL	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat	-	no_errors
LILRB3	11025	genome.wustl.edu	36	19	59418053	59418053	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2892-03A-01W-0733-08	TCGA-AB-2892-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	59418053	59418053	C	T	SNP	LILRB3	NM_001081450	human	genbank	54_36p	-1	reviewed	missense	c.264	p.M88I	0.005	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors
RASGRP4	115727	genome.wustl.edu	36	19	43595892	43595892	+	Silent	SNP	C	C	A			TCGA-AB-2892-03A-01W-0733-08	TCGA-AB-2892-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	43595892	43595892	C	A	SNP	RASGRP4	NM_170604	human	genbank	54_36p	-1	reviewed	silent	c.1293	p.P431	0.998	superfamily_Ras GEF,HMMSmart_SM00147	superfamily_Ras GEF,HMMPfam_RasGEF_N,HMMPfam_RasGEF,HMMSmart_SM00147,superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1	-	no_errors
LOC647276	647276	genome.wustl.edu	36	3	186618079	186618081	+	RNA	DEL	CTT	CTT	-			TCGA-AB-2892-03A-01W-0733-08	TCGA-AB-2892-11A-01W-0732-08	CTT	CTT			CTT	CTT	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	186618079	186618081	CTT	-	DEL	LOC647276	XR_017675	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.638:0.693:0.921	-	-	-	pseudogene
NRAS	4893	genome.wustl.edu	36	1	115058053	115058053	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2892-03A-01W-0733-08	TCGA-AB-2892-11A-01W-0732-08	G	G			G	G	Verified	Valid	Somatic		Capture				Illumina GAIIx	1	115058053	115058053	G	T	SNP	NRAS					-1	reviewed	missense	c.181	p.Q61K	1	HMMSmart_SM00173,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00175,HMMPfam_Ras,HMMSmart_SM00174	HMMSmart_SM00173,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00175,HMMPfam_Ras,HMMSmart_SM00174	-	NA
ENSG00000216522	0	genome.wustl.edu	36	NT_113923	83041	83041	+	Silent	SNP	G	G	A			TCGA-AB-2892-03A-01W-0733-08	TCGA-AB-2892-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	NT_113923	83041	83041	G	A	SNP	ENSG00000216522	ENST00000402757	human	ensembl	54_36p	-1	known	silent	c.1338	p.A446	NULL	HMMPfam_G_glu_transpept	HMMPfam_G_glu_transpept,PatternScan_G_GLU_TRANSPEPTIDASE	-	no_errors
EGLN2	112398	genome.wustl.edu	36	19	45998490	45998490	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2892-03A-01W-0733-08	TCGA-AB-2892-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	45998490	45998490	C	T	SNP	EGLN2	NM_053046	human	genbank	54_36p	+1	reviewed	missense	c.173	p.S58L	0.933	NULL	HMMSmart_SM00702,HMMPfam_2OG-FeII_Oxy	-	no_errors
LOC392232	392232	genome.wustl.edu	36	8	73311710	73311711	+	RNA	INS	-	-	T			TCGA-AB-2892-03A-01W-0733-08	TCGA-AB-2892-11A-01W-0732-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	73311710	73311711	-	T	INS	LOC392232	XR_037363	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.853:0.839	-	-	-	no_errors
LILRA3	11026	genome.wustl.edu	36	19	59495562	59495562	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2892-03A-01W-0733-08	TCGA-AB-2892-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	59495562	59495562	G	T	SNP	LILRA3	NM_006865	human	genbank	54_36p	-1	provisional	missense	c.74	p.P25H	0.009	superfamily_SSF48726	HMMSmart_IG,HMMPfam_ig,superfamily_SSF48726	-	no_errors
DUS1L	64118	genome.wustl.edu	36	17	77609552	77609552	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2892-03A-01W-0733-08	TCGA-AB-2892-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	77609552	77609552	G	A	SNP	DUS1L	ENST00000354321	human	ensembl	54_36p	-1	known	missense	c.835	p.R279W	0.928	NULL	HMMPfam_Dus,superfamily_FMN-linked oxidoreductases	-	no_start_codon
DNAL4	10126	genome.wustl.edu	36	22	37505417	37505417	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2892-03A-01W-0733-08	TCGA-AB-2892-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	22	37505417	37505417	C	T	SNP	DNAL4	NM_005740	human	genbank	54_36p	-1	validated	missense	c.301	p.V101I	1.000	superfamily_DLC,HMMPfam_Dynein_light	superfamily_DLC,HMMPfam_Dynein_light	-	no_errors
LOC400403	400403	genome.wustl.edu	36	15	75976218	75976218	+	RNA	SNP	C	C	T			TCGA-AB-2892-03A-01W-0733-08	TCGA-AB-2892-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	75976218	75976218	C	T	SNP	LOC400403	XR_038194	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.976	-	-	-	pseudogene
CCDC8	83987	genome.wustl.edu	36	19	51606931	51606931	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2892-03A-01W-0733-08	TCGA-AB-2892-11A-01W-0732-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	51606931	51606931	T	C	SNP	CCDC8	NM_032040	human	genbank	54_36p	-1	validated	missense	c.977	p.D326G	0.000	NULL	NULL	-	no_errors
WDHD1	11169	genome.wustl.edu	36	14	54480902	54480902	+	Silent	SNP	A	A	G			TCGA-AB-2892-03A-01W-0733-08	TCGA-AB-2892-11A-01W-0732-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	14	54480902	54480902	A	G	SNP	WDHD1	NM_007086	human	genbank	54_36p	-1	reviewed	silent	c.3087	p.N1029	1.000	superfamily_WD40_like,superfamily_HMG-box,HMMSmart_HMG	superfamily_WD40_like,HMMPfam_WD40,HMMSmart_WD40,PatternScan_WD_REPEATS_1,superfamily_HMG-box,HMMSmart_HMG	-	no_errors
