Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
ADAMTS1	9510	genome.wustl.edu	36	21	27136618	27136618	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2894-03A-01W-0733-08	TCGA-AB-2894-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	21	27136618	27136618	G	A	SNP	ADAMTS1	NM_006988	human	genbank	54_36p	-1	reviewed	missense	c.988	p.R330W	0.998	superfamily_SSF55486,HMMPfam_Reprolysin	PatternScan_DISINTEGRIN_1,HMMPfam_Pep_M12B_propep,superfamily_SSF55486,HMMPfam_Reprolysin,PatternScan_ZINC_PROTEASE,HMMSmart_ACR,superfamily_TSP1,HMMSmart_TSP1,HMMPfam_TSP_1,HMMPfam_ADAM_spacer1	-	no_errors
ANKRD44	91526	genome.wustl.edu	36	2	197651628	197651629	+	Frame_Shift_Del	DEL	TG	TG	-			TCGA-AB-2894-03A-01W-0733-08	TCGA-AB-2894-11A-01W-0732-08	TG	TG			TG	TG	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	197651628	197651629	TG	-	DEL	ANKRD44	ENST00000409153	human	ensembl	54_36p	-1	known	frame_shift_del	c.1694_1693	p.H565fs	0.532:0.756	superfamily_ANK	HMMSmart_ANK,HMMPfam_Ank,superfamily_ANK	-	no_errors
PCDHA6	56142	genome.wustl.edu	36	5	140188859	140188859	+	Silent	SNP	T	T	C			TCGA-AB-2894-03A-01W-0733-08	TCGA-AB-2894-11A-01W-0732-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	140188859	140188859	T	C	SNP	PCDHA6	NM_018909	human	genbank	54_36p	+1	reviewed	silent	c.999	p.H333	1.000	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112	superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors
ARL6IP1	23204	genome.wustl.edu	36	16	18714322	18714322	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2894-03A-01W-0733-08	TCGA-AB-2894-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	18714322	18714322	G	A	SNP	ARL6IP1	NM_015161	human	genbank	54_36p	-1	provisional	missense	c.373	p.R125C	1.000	HMMPfam_Reticulon	HMMPfam_Reticulon	-	no_errors
CRISPLD1	83690	genome.wustl.edu	36	8	76091409	76091409	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2894-03A-01W-0733-08	TCGA-AB-2894-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	76091409	76091409	G	A	SNP	CRISPLD1	NM_031461	human	genbank	54_36p	+1	validated	missense	c.782	p.R261Q	0.995	NULL	superfamily_PR-1-like,HMMSmart_SM00198,HMMPfam_SCP,PatternScan_CRISP_2,superfamily_LCCL domain,HMMSmart_SM00603,HMMPfam_LCCL	-	no_errors
RAPSN	5913	genome.wustl.edu	36	11	47425971	47425971	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2894-03A-01W-0733-08	TCGA-AB-2894-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	47425971	47425971	C	T	SNP	RAPSN	NM_005055	human	genbank	54_36p	-1	reviewed	missense	c.500	p.C167Y	1.000	superfamily_TPR-like,HMMSmart_SM00028	HMMPfam_Rapsyn_N,PatternScan_43_KD_POSTSYNAPTIC,superfamily_TPR-like,HMMSmart_SM00028,HMMPfam_TPR_1,superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4	-	no_errors
C2orf67	151050	genome.wustl.edu	36	2	210648701	210648701	+	Silent	SNP	C	C	G			TCGA-AB-2894-03A-01W-0733-08	TCGA-AB-2894-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	210648701	210648701	C	G	SNP	C2orf67	NM_152519	human	genbank	54_36p	-1	validated	silent	c.1575	p.L525	0.998	NULL	NULL	-	no_errors
TIPRL	261726	genome.wustl.edu	36	1	166434782	166434782	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2894-03A-01W-0733-08	TCGA-AB-2894-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	166434782	166434782	C	A	SNP	TIPRL	NM_152902	human	genbank	54_36p	+1	validated	missense	c.614	p.A205D	1.000	HMMPfam_TIP41	HMMPfam_TIP41	-	no_errors
PLEC	5339	genome.wustl.edu	36	8	145062821	145062821	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2894-03A-01W-0733-08	TCGA-AB-2894-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	145062821	145062821	G	A	SNP	PLEC1	NM_201380	human	genbank	54_36p	-1	reviewed	missense	c.13567	p.R4523C	1.000	superfamily_Plakin repeat,HMMSmart_SM00250,HMMPfam_Plectin	HMMPfam_S10_plectin,superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_SM00033,PatternScan_ACTININ_2,superfamily_Spectrin repeat,HMMSmart_SM00150,superfamily_Plakin repeat,HMMSmart_SM00250,HMMPfam_Plectin	-	no_errors
ALG1	56052	genome.wustl.edu	36	16	5068819	5068819	+	Silent	SNP	C	C	T			TCGA-AB-2894-03A-01W-0733-08	TCGA-AB-2894-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	5068819	5068819	C	T	SNP	ALG1	NM_019109	human	genbank	54_36p	+1	reviewed	silent	c.801	p.S267	0.000	superfamily_SSF53756	superfamily_SSF53756,HMMPfam_Glycos_transf_1	-	no_errors
