Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
SPEG	10290	genome.wustl.edu	36	2	220052978	220052978	+	Silent	SNP	G	G	C			TCGA-AB-2899-03A-01W-0733-08	TCGA-AB-2899-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	220052978	220052978	G	C	SNP	SPEG	NM_005876	human	genbank	54_36p	+1	validated	silent	c.5214	p.R1738	0.999	HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase	HMMSmart_SM00219,HMMSmart_SM00220,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,PatternScan_PROTEIN_KINASE_ST,superfamily_Fibronectin type III,superfamily_Protein kinase-like (PK-like),HMMPfam_I-set,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,superfamily_Immunoglobulin	-	no_errors
SLC7A7	9056	genome.wustl.edu	36	14	22312678	22312678	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2899-03A-01W-0733-08	TCGA-AB-2899-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	14	22312678	22312678	C	T	SNP	SLC7A7	NM_003982	human	genbank	54_36p	-1	reviewed	missense	c.1517	p.R506Q	0.010	NULL	PatternScan_AMINO_ACID_PERMEASE_1,HMMPfam_AA_permease	-	no_errors
TCEAL6	158931	genome.wustl.edu	36	X	101282827	101282827	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2899-03A-01W-0733-08	TCGA-AB-2899-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	101282827	101282827	C	T	SNP	TCEAL6	NM_001006938	human	genbank	54_36p	-1	validated	missense	c.133	p.E45K	0.010	HMMPfam_TFA	HMMPfam_TFA	-	no_errors
LOC652670	652670	genome.wustl.edu	36	3	75674674	75674674	+	RNA	SNP	C	C	T			TCGA-AB-2899-03A-01W-0733-08	TCGA-AB-2899-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	75674674	75674674	C	T	SNP	LOC652670	XR_016285	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
MBD5	55777	genome.wustl.edu	36	2	148959875	148959875	+	Silent	SNP	G	G	A			TCGA-AB-2899-03A-01W-0733-08	TCGA-AB-2899-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	148959875	148959875	G	A	SNP	MBD5	NM_018328	human	genbank	54_36p	+1	validated	silent	c.2940	p.Q980	1.000	NULL	HMMSmart_SM00391,HMMPfam_MBD,superfamily_Tudor/PWWP/MBT,HMMPfam_PWWP	-	no_errors
SLC2A9	56606	genome.wustl.edu	36	4	9607661	9607661	+	Silent	SNP	G	G	A			TCGA-AB-2899-03A-01W-0733-08	TCGA-AB-2899-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	9607661	9607661	G	A	SNP	SLC2A9	NM_020041	human	genbank	54_36p	-1	reviewed	silent	c.252	p.Y84	1.000	superfamily_MFS general substrate transporter,HMMPfam_Sugar_tr	superfamily_MFS general substrate transporter,HMMPfam_Sugar_tr,PatternScan_SUGAR_TRANSPORT_2,PatternScan_SUGAR_TRANSPORT_1	-	no_errors
SCAF1	58506	genome.wustl.edu	36	19	54846181	54846181	+	Silent	SNP	G	G	C			TCGA-AB-2899-03A-01W-0733-08	TCGA-AB-2899-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	54846181	54846181	G	C	SNP	SCAF1	NM_021228	human	genbank	54_36p	+1	provisional	silent	c.723	p.P241	0.114	NULL	NULL	-	no_errors
ALG13	79868	genome.wustl.edu	36	X	110889729	110889729	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2899-03A-01W-0733-08	TCGA-AB-2899-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	110889729	110889729	C	T	SNP	ALG13	ENST00000394780	human	ensembl	54_36p	+1	known	missense	c.3260	p.P1087L	0.057	NULL	superfamily_SSF53756,HMMPfam_Glyco_tran_28_C,superfamily_SSF54001,HMMPfam_OTU,superfamily_SSF63748	-	no_errors
OIT3	170392	genome.wustl.edu	36	10	74343230	74343230	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2899-03A-01W-0733-08	TCGA-AB-2899-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	74343230	74343230	G	A	SNP	OIT3	NM_152635	human	genbank	54_36p	+1	provisional	missense	c.949	p.D317N	0.436	HMMPfam_Zona_pellucida,HMMSmart_SM00241	superfamily_EGF/Laminin,HMMSmart_SM00181,PatternScan_EGF_CA,HMMSmart_SM00179,HMMPfam_EGF,PatternScan_ASX_HYDROXYL,HMMPfam_Zona_pellucida,HMMSmart_SM00241	-	no_errors
IMMP2L	83943	genome.wustl.edu	36	7	110313941	110313941	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2899-03A-01W-0733-08	TCGA-AB-2899-11A-01W-0732-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	110313941	110313941	T	C	SNP	IMMP2L	NM_032549	human	genbank	54_36p	-1	provisional	missense	c.352	p.I118V	1.000	superfamily_LexA/Signal peptidase,PatternScan_SPASE_I_3	superfamily_LexA/Signal peptidase,HMMPfam_Peptidase_S24,PatternScan_ATPASE_ALPHA_BETA,PatternScan_SPASE_I_3	-	no_errors
KCNH2	3757	genome.wustl.edu	36	7	150274939	150274939	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2899-03A-01W-0733-08	TCGA-AB-2899-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	150274939	150274939	C	T	SNP	KCNH2	NM_000238	human	genbank	54_36p	-1	reviewed	missense	c.3289	p.V1097I	0.872	NULL	superfamily_PYP-like sensor domain (PAS domain),HMMPfam_PAS,HMMSmart_SM00086,superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,superfamily_cAMP-binding domain-like,HMMSmart_SM00100,HMMPfam_cNMP_binding	-	no_errors
UBN2	254048	genome.wustl.edu	36	7	138619697	138619697	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2899-03A-01W-0733-08	TCGA-AB-2899-11A-01W-0732-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	138619697	138619697	A	G	SNP	UBN2	NM_173569	human	genbank	54_36p	+1	validated	missense	c.3257	p.N1086S	1.000	NULL	PatternScan_TUBULIN	-	no_errors
OPN5	221391	genome.wustl.edu	36	6	47884004	47884004	+	Silent	SNP	C	C	T			TCGA-AB-2899-03A-01W-0733-08	TCGA-AB-2899-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	47884004	47884004	C	T	SNP	OPN5	NM_181744	human	genbank	54_36p	+1	reviewed	silent	c.912	p.I304	1.000	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_OPSIN	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,PatternScan_OPSIN	-	no_errors
C7	730	genome.wustl.edu	36	5	41017295	41017297	+	In_Frame_Del	DEL	GAA	GAA	-			TCGA-AB-2899-03A-01W-0733-08	TCGA-AB-2899-11A-01W-0732-08	GAA	GAA			GAA	GAA	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	41017295	41017297	GAA	-	DEL	C7	NM_000587	human	genbank	54_36p	+1	reviewed	in_frame_del	c.2395_2397	p.E800in_frame_del	0.054:0.080:0.095	HMMSmart_FIMAC	superfamily_TSP1,HMMSmart_TSP1,HMMPfam_TSP_1,HMMPfam_Ldl_recept_a,HMMSmart_LDLa,PatternScan_LDLRA_1,HMMPfam_MACPF,HMMSmart_MACPF,PatternScan_MAC_PERFORIN,superfamily_SSF57196,PatternScan_EGF_1,superfamily_Complement_control_module,HMMPfam_Sushi,HMMSmart_CCP,HMMSmart_FIMAC,PatternScan_EGF_2	-	no_errors
IKZF4	64375	genome.wustl.edu	36	12	54706920	54706920	+	Silent	SNP	C	C	T			TCGA-AB-2899-03A-01W-0733-08	TCGA-AB-2899-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	54706920	54706920	C	T	SNP	IKZF4	NM_022465	human	genbank	54_36p	+1	validated	silent	c.375	p.S125	0.437	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
SETBP1	26040	genome.wustl.edu	36	18	40785911	40785911	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2899-03A-01W-0733-08	TCGA-AB-2899-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	18	40785911	40785911	G	A	SNP	SETBP1	NM_015559	human	genbank	54_36p	+1	validated	missense	c.2446	p.G816S	1.000	NULL	HMMPfam_AT_hook,HMMSmart_AT_hook	-	no_errors
DUSP1	1843	genome.wustl.edu	36	5	172128423	172128423	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2899-03A-01W-0733-08	TCGA-AB-2899-11A-01W-0732-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	172128423	172128423	T	C	SNP	DUSP1	NM_004417	human	genbank	54_36p	-1	reviewed	missense	c.1052	p.N351S	0.996	NULL	superfamily_Rhodanese-like,HMMPfam_Rhodanese,HMMSmart_RHOD,superfamily_SSF52799,HMMPfam_DSPc,HMMSmart_DSPc,PatternScan_TYR_PHOSPHATASE_1	-	no_errors
QRICH2	84074	genome.wustl.edu	36	17	71785833	71785833	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-2899-03A-01W-0733-08	TCGA-AB-2899-11A-01W-0732-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	71785833	71785833	T	A	SNP	QRICH2	NM_032134	human	genbank	54_36p	-1	provisional	missense	c.4451	p.D1484V	0.303	NULL	NULL	-	no_errors
RUNX1	861	genome.wustl.edu	36	21	35174748	35174748	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2899-03A-01W-0733-08	TCGA-AB-2899-11A-01W-0732-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	21	35174748	35174748	T	C	SNP	RUNX1	NM_001754	human	genbank	54_36p	-1	reviewed	missense	c.484	p.R162G	1.000	superfamily_p53-like transcription factors,HMMPfam_Runt	superfamily_p53-like transcription factors,HMMPfam_Runt,HMMPfam_RunxI	-	no_errors
