Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
PCDHA8	56140	genome.wustl.edu	36	5	140202942	140202942	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2908-03A-01W-0745-08	TCGA-AB-2908-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	140202942	140202942	C	A	SNP	PCDHA8	NM_018911	human	genbank	54_36p	+1	reviewed	missense	c.1852	p.P618T	0.001	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112	superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors
LOC389000	389000	genome.wustl.edu	36	2	91440296	91440296	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2908-03A-01W-0745-08	TCGA-AB-2908-11A-01W-0745-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	91440296	91440296	A	G	SNP	LOC389000	XM_371534	human	genbank	54_36p	-1	model	missense	c.1130	p.L377P	1.000	HMMPfam_Na_H_Exchanger	HMMPfam_Na_H_Exchanger	-	pseudogene
POLE2	5427	genome.wustl.edu	36	14	49187773	49187773	+	Silent	SNP	G	G	T			TCGA-AB-2908-03A-01W-0745-08	TCGA-AB-2908-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	14	49187773	49187773	G	T	SNP	POLE2	NM_002692	human	genbank	54_36p	-1	provisional	silent	c.1284	p.V428	1.000	HMMPfam_DNA_pol_E_B	HMMPfam_DNA_pol_E_B	-	no_errors
FLJ43860	389690	genome.wustl.edu	36	8	142550446	142550446	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2908-03A-01W-0745-08	TCGA-AB-2908-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	142550446	142550446	G	T	SNP	FLJ43860	NM_207414	human	genbank	54_36p	-1	validated	missense	c.1897	p.Q633K	0.639	superfamily_ARM repeat	HMMPfam_HEAT,superfamily_ARM repeat	-	pseudogene
GRM3	2913	genome.wustl.edu	36	7	86306304	86306304	+	Missense_Mutation	SNP	G	G	C			TCGA-AB-2908-03A-01W-0745-08	TCGA-AB-2908-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	86306304	86306304	G	C	SNP	GRM3	NM_000840	human	genbank	54_36p	+1	reviewed	missense	c.1538	p.C513S	1.000	HMMPfam_NCD3G,superfamily_Periplasmic binding protein-like I	HMMPfam_ANF_receptor,HMMPfam_NCD3G,HMMPfam_7tm_3,PatternScan_G_PROTEIN_RECEP_F3_1,PatternScan_G_PROTEIN_RECEP_F3_2,PatternScan_G_PROTEIN_RECEP_F3_3,superfamily_Periplasmic binding protein-like I	-	no_errors
SLAMF7	57823	genome.wustl.edu	36	1	158984926	158984926	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2908-03A-01W-0745-08	TCGA-AB-2908-11A-01W-0745-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	158984926	158984926	A	G	SNP	SLAMF7	NM_021181	human	genbank	54_36p	+1	provisional	missense	c.374	p.Y125C	0.922	HMMPfam_V-set,superfamily_Immunoglobulin	HMMPfam_V-set,superfamily_Immunoglobulin	-	no_errors
RSPH1	89765	genome.wustl.edu	36	21	42770513	42770513	+	Silent	SNP	C	C	T			TCGA-AB-2908-03A-01W-0745-08	TCGA-AB-2908-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	21	42770513	42770513	C	T	SNP	RSPH1	NM_080860	human	genbank	54_36p	-1	validated	silent	c.684	p.P228	0.001	NULL	HMMPfam_MORN,superfamily_Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain,HMMSmart_SM00698	-	no_errors
TJP1	7082	genome.wustl.edu	36	15	27788125	27788125	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2908-03A-01W-0745-08	TCGA-AB-2908-11A-01W-0745-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	27788125	27788125	A	G	SNP	TJP1	NM_003257	human	genbank	54_36p	-1	validated	missense	c.4780	p.S1594P	1.000	NULL	superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_SH3-domain,HMMPfam_SH3_2,HMMSmart_SM00072,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Guanylate_kin,HMMPfam_Gua_kin_assoc_C,HMMPfam_ZU5,HMMSmart_SM00218	-	no_errors
PIP5K1B	8395	genome.wustl.edu	36	9	70724423	70724423	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2908-03A-01W-0745-08	TCGA-AB-2908-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	70724423	70724423	G	T	SNP	PIP5K1B	NM_003558	human	genbank	54_36p	+1	validated	missense	c.1074	p.M358I	1.000	superfamily_SAICAR synthase-like,HMMSmart_SM00330,HMMPfam_PIP5K	superfamily_SAICAR synthase-like,HMMSmart_SM00330,HMMPfam_PIP5K	-	no_errors
RPS3A	6189	genome.wustl.edu	36	4	152243588	152243588	+	Missense_Mutation	SNP	A	A	C			TCGA-AB-2908-03A-01W-0745-08	TCGA-AB-2908-11A-01W-0745-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	152243588	152243588	A	C	SNP	RPS3A	NM_001006	human	genbank	54_36p	+1	reviewed	missense	c.470	p.Q157P	1.000	HMMPfam_Ribosomal_S3Ae	HMMPfam_Ribosomal_S3Ae,PatternScan_RIBOSOMAL_S3AE	-	no_errors
SMC3	9126	genome.wustl.edu	36	10	112351822	112351822	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2908-03A-01W-0745-08	TCGA-AB-2908-11A-01W-0745-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	112351822	112351822	A	G	SNP	SMC3	NM_005445	human	genbank	54_36p	+1	reviewed	missense	c.3001	p.I1001V	1.000	HMMPfam_SMC_N,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_SMC_N,HMMPfam_SMC_hinge,superfamily_Smc hinge domain,PatternScan_ABC_TRANSPORTER_1,superfamily_P-loop containing nucleoside triphosphate hydrolases,superfamily_BAG domain	-	no_errors
ESCO2	157570	genome.wustl.edu	36	8	27690517	27690517	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2908-03A-01W-0745-08	TCGA-AB-2908-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	27690517	27690517	G	A	SNP	ESCO2	NM_001017420	human	genbank	54_36p	+1	reviewed	missense	c.773	p.R258K	0.001	NULL	NULL	-	no_errors
MT-CO1	0	genome.wustl.edu	36	MT	6721	6721	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2908-03A-01W-0745-08	TCGA-AB-2908-11A-01W-0745-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	MT	6721	6721	A	G	SNP	MT-CO1	ENST00000361624	human	ensembl	54_36p	+1	known	missense	c.817	p.M273V	NULL	superfamily_Cytochrome c oxidase subunit I-like,HMMPfam_COX1,PatternScan_COX1_CUB	superfamily_Cytochrome c oxidase subunit I-like,HMMPfam_COX1,PatternScan_COX1_CUB	-	no_stop_codon
TP53	7157	genome.wustl.edu	36	17	7519232	7519232	+	Missense_Mutation	SNP	G	G	C			TCGA-AB-2908-03A-01W-0745-08	TCGA-AB-2908-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	7519232	7519232	G	C	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.423	p.C141W	1.000	superfamily_p53-like transcription factors,HMMPfam_P53	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD	-	no_errors
STK32A	202374	genome.wustl.edu	36	5	146732949	146732949	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AB-2908-03A-01W-0745-08	TCGA-AB-2908-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	146732949	146732949	C	T	SNP	STK32A	ENST00000306304	human	ensembl	54_36p	+1	known	nonsense	c.802	p.R268*	0.997	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
DNMT3A	1788	genome.wustl.edu	36	2	25310747	25310747	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2908-03A-01W-0745-08	TCGA-AB-2908-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	25310747	25310747	G	A	SNP	DNMT3A	NM_022552	human	genbank	54_36p	-1	reviewed	missense	c.2644	p.R882C	1.000	superfamily_S-adenosyl-L-methionine-dependent methyltransferases	HMMPfam_PWWP,HMMSmart_SM00293,HMMPfam_DNA_methylase,superfamily_FYVE/PHD zinc finger,PatternScan_C5_MTASE_1,superfamily_S-adenosyl-L-methionine-dependent methyltransferases,superfamily_Tudor/PWWP/MBT	-	no_errors
IKZF3	22806	genome.wustl.edu	36	17	35175680	35175680	+	Silent	SNP	G	G	A			TCGA-AB-2908-03A-01W-0745-08	TCGA-AB-2908-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	35175680	35175680	G	A	SNP	IKZF3	NM_012481	human	genbank	54_36p	-1	reviewed	silent	c.1419	p.C473	1.000	superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2	-	no_errors
LOC338870	338870	genome.wustl.edu	36	13	20566654	20566654	+	RNA	SNP	G	G	A			TCGA-AB-2908-03A-01W-0745-08	TCGA-AB-2908-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	13	20566654	20566654	G	A	SNP	LOC338870	XR_016327	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
ARID1A	8289	genome.wustl.edu	36	1	26974278	26974278	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2908-03A-01W-0745-08	TCGA-AB-2908-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	26974278	26974278	G	A	SNP	ARID1A	NM_006015	human	genbank	54_36p	+1	reviewed	missense	c.4973	p.R1658Q	1.000	NULL	superfamily_ARID-like,HMMPfam_ARID,HMMSmart_SM00501	-	no_errors
CNTNAP4	85445	genome.wustl.edu	36	16	75081173	75081173	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2908-03A-01W-0745-08	TCGA-AB-2908-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	75081173	75081173	G	A	SNP	CNTNAP4	NM_138994	human	genbank	54_36p	+1	validated	missense	c.1753	p.E585K	0.993	superfamily_Concanavalin A-like lectins/glucanases	HMMPfam_F5_F8_type_C,HMMSmart_SM00231,PatternScan_FA58C_1,PatternScan_FA58C_2,HMMSmart_SM00282,superfamily_Fibrinogen C-terminal domain-like,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Galactose-binding domain-like,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7517622	7517622	+	Nonsense_Mutation	SNP	G	G	A			TCGA-AB-2908-03A-01W-0745-08	TCGA-AB-2908-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	7517622	7517622	G	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	nonsense	c.949	p.Q317*	0.550	NULL	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD	-	no_errors
ENSG00000210082	0	genome.wustl.edu	36	MT	1872	1872	+	RNA	SNP	A	A	G			TCGA-AB-2908-03A-01W-0745-08	TCGA-AB-2908-11A-01W-0745-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	MT	1872	1872	A	G	SNP	ENSG00000210082	ENST00000387347	human	ensembl	54_36p	+1	known	rna	NULL	NULL	NULL	-	-	-	no_errors
KDM3B	51780	genome.wustl.edu	36	5	137755699	137755699	+	Frame_Shift_Del	DEL	C	C	-			TCGA-AB-2908-03A-01W-0745-08	TCGA-AB-2908-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	137755699	137755699	C	-	DEL	JMJD1B	NM_016604	human	genbank	54_36p	+1	validated	frame_shift_del	c.2479	p.Q827fs	1.000	NULL	HMMSmart_SM00558,HMMPfam_JmjC,superfamily_Clavaminate synthase-like	-	no_errors
CYP2F1	1572	genome.wustl.edu	36	19	46322534	46322534	+	Silent	SNP	C	C	T			TCGA-AB-2908-03A-01W-0745-08	TCGA-AB-2908-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	46322534	46322534	C	T	SNP	CYP2F1	NM_000774	human	genbank	54_36p	+1	reviewed	silent	c.1035	p.A345	0.086	HMMPfam_p450,superfamily_Cytochrome P450	HMMPfam_p450,superfamily_Cytochrome P450,PatternScan_CYTOCHROME_P450	-	no_errors
C1orf105	92346	genome.wustl.edu	36	1	170692206	170692206	+	Frame_Shift_Del	DEL	T	T	-			TCGA-AB-2908-03A-01W-0745-08	TCGA-AB-2908-11A-01W-0745-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	170692206	170692206	T	-	DEL	C1orf105	NM_139240	human	genbank	54_36p	+1	predicted	frame_shift_del	c.227	p.L76fs	0.060	NULL	NULL	-	no_errors
TMPRSS13	84000	genome.wustl.edu	36	11	117290332	117290332	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2908-03A-01W-0745-08	TCGA-AB-2908-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	117290332	117290332	C	T	SNP	TMPRSS13	NM_001077263	human	genbank	54_36p	-1	validated	missense	c.664	p.D222N	0.962	NULL	superfamily_SRCR-like,HMMSmart_SM00202,superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	no_errors
