Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
AKD1	221264	genome.wustl.edu	36	6	109956796	109956796	+	Silent	SNP	T	T	A			TCGA-AB-2909-03A-01W-0745-08	TCGA-AB-2909-11A-01W-0745-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	109956796	109956796	T	A	SNP	AKD1	NM_001001706	human	genbank	54_36p	-1	provisional	silent	c.981	p.G327	0.000	NULL	HMMPfam_YHS,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_ADK	-	no_errors
ENSG00000212913	0	genome.wustl.edu	36	NT_113956	108979	108979	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2909-03A-01W-0745-08	TCGA-AB-2909-11A-01W-0745-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	NT_113956	108979	108979	T	C	SNP	ENSG00000212913	ENST00000391600	human	ensembl	54_36p	+1	known	missense	c.431	p.L144P	NULL	NULL	NULL	-	no_errors
DSPP	1834	genome.wustl.edu	36	4	88754809	88754809	+	Silent	SNP	C	C	T			TCGA-AB-2909-03A-01W-0755-09	TCGA-AB-2909-11A-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	4	88754809	88754809	C	T	SNP	DSPP	NM_014208	human	genbank	54_36p	+1	reviewed	silent	c.1971	p.S657	0.268	NULL	NULL	-	no_errors
ETV6	2120	genome.wustl.edu	36	12	11883482	11883483	+	Frame_Shift_Ins	INS	-	-	TCCC			TCGA-AB-2909-03A-01W-0745-08	TCGA-AB-2909-11A-01W-0745-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	11883482	11883483	-	TCCC	INS	ETV6	NM_001987	human	genbank	54_36p	+1	reviewed	frame_shift_ins	c.305_306	p.R103fs	1.000:0.997	superfamily_SAM/Pointed domain,HMMPfam_SAM_PNT,HMMSmart_SM00251	"superfamily_SAM/Pointed domain,HMMPfam_SAM_PNT,HMMSmart_SM00251,superfamily_""Winged helix"" DNA-binding domain,HMMPfam_Ets,HMMSmart_SM00413,PatternScan_ETS_DOMAIN_2"	-	no_errors
LOC100133362	100133362	genome.wustl.edu	36	6	3700099	3700100	+	RNA	INS	-	-	CT			TCGA-AB-2909-03A-01W-0745-08	TCGA-AB-2909-11A-01W-0745-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	3700099	3700100	-	CT	INS	LOC100133362	XR_038788	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.004:0.001	-	-	-	pseudogene
LOC100132768	100132768	genome.wustl.edu	36	X	9337077	9337077	+	RNA	SNP	C	C	A			TCGA-AB-2909-03A-01W-0745-08	TCGA-AB-2909-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	9337077	9337077	C	A	SNP	LOC100132768	XR_037393	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.009	-	-	-	pseudogene
LOC729400	729400	genome.wustl.edu	36	6	26975938	26975938	+	RNA	DEL	T	T	-			TCGA-AB-2909-03A-01W-0745-08	TCGA-AB-2909-11A-01W-0745-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	26975938	26975938	T	-	DEL	LOC729400	XR_015532	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.004	-	-	-	pseudogene
HS6ST1	9394	genome.wustl.edu	36	2	128742635	128742635	+	Silent	SNP	G	G	A			TCGA-AB-2909-03A-01W-0755-09	TCGA-AB-2909-11A-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	2	128742635	128742635	G	A	SNP	HS6ST1	NM_004807	human	genbank	54_36p	-1	reviewed	silent	c.807	p.P269	1.000	HMMPfam_HS6ST	HMMPfam_HS6ST	-	no_errors
ENSG00000213797	0	genome.wustl.edu	36	19	58494464	58494464	+	Silent	SNP	A	A	G			TCGA-AB-2909-03A-01W-0745-08	TCGA-AB-2909-11A-01W-0745-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	58494464	58494464	A	G	SNP	ENSG00000213797	ENST00000396416	human	ensembl	54_36p	-1	known	silent	c.990	p.T330	0.001	NULL	superfamily_SSF57756	-	no_start_codon
LOC730952	730952	genome.wustl.edu	36	12	218758	218758	+	RNA	SNP	C	C	T			TCGA-AB-2909-03A-01W-0745-08	TCGA-AB-2909-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	218758	218758	C	T	SNP	LOC730952	XR_037060	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.028	-	-	-	pseudogene
FLT3	2322	genome.wustl.edu	36	13	27506271	27506272	+	In_Frame_Ins	INS	-	-	ATTCTG			TCGA-AB-2909-03A-01W-0755-09	TCGA-AB-2909-11A-01W-0755-09	-	-			-	-	Verified	Valid	Somatic		Capture				Illumina HiSeq	13	27506266	27506267	-	ATTCTG	INS	FLT3					-1	reviewed	in_frame_ins	c.1790_1789	p.597in_frame_insSE	0.765:0.789	superfamily_Kinase_like	superfamily_SSF48726,HMMPfam_ig,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_RECEPTOR_TYR_KIN_III,PatternScan_PROTEIN_KINASE_TYR	-	NA
PHACTR1	221692	genome.wustl.edu	36	6	12857658	12857658	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2909-03A-01W-0745-08	TCGA-AB-2909-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	12857658	12857658	C	A	SNP	PHACTR1	ENST00000406205	human	ensembl	54_36p	+1	known	missense	c.5	p.P2H	1.000	NULL	HMMPfam_RPEL,HMMSmart_SM00707	-	no_start_codon:no_stop_codon
LOC100133273	100133273	genome.wustl.edu	36	8	34851679	34851679	+	RNA	SNP	A	A	G			TCGA-AB-2909-03A-01W-0745-08	TCGA-AB-2909-11A-01W-0745-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	34851679	34851679	A	G	SNP	LOC100133273	XR_039238	human	genbank	54_36p	+1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
STXBP2	6813	genome.wustl.edu	36	19	7611015	7611015	+	Silent	SNP	T	T	C			TCGA-AB-2909-03A-01W-0745-08	TCGA-AB-2909-11A-01W-0745-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	7611015	7611015	T	C	SNP	STXBP2	ENST00000320400	human	ensembl	54_36p	+1	known	silent	c.213	p.Y71	0.003	NULL	PatternScan_VWFC_1,PatternScan_ZINC_FINGER_C2H2_1,superfamily_Sec1/munc18-like (SM) proteins,HMMPfam_Sec1	-	no_start_codon
