Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
SIGLEC12	89858	genome.wustl.edu	36	19	56692004	56692004	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2913-03A-01W-0732-08	TCGA-AB-2913-11A-01W-0732-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	56692004	56692004	A	G	SNP	SIGLEC12	NM_053003	human	genbank	54_36p	-1	reviewed	missense	c.1541	p.V514A	0.000	NULL	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_V-set,HMMPfam_ig,HMMPfam_C2-set_2,superfamily_Immunoglobulin	-	no_errors
ENSG00000217945	0	genome.wustl.edu	36	NT_113961	149191	149195	+	Frame_Shift_Del	DEL	AAGAT	AAGAT	-			TCGA-AB-2913-03A-01W-0732-08	TCGA-AB-2913-11A-01W-0732-08	AAGAT	AAGAT			AAGAT	AAGAT	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	NT_113961	149191	149195	AAGAT	-	DEL	ENSG00000217945	ENST00000402318	human	ensembl	54_36p	+1	novel	frame_shift_del	c.1946_1950	p.D650fs	NULL	NULL	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat	-	no_start_codon
FAM90A24P	441332	genome.wustl.edu	36	8	7915237	7915237	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2913-03A-01W-0732-08	TCGA-AB-2913-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	7915237	7915237	C	T	SNP	FAM90A24P	ENST00000400118	human	ensembl	54_36p	-1	known	missense	c.1078	p.D360N	0.003	NULL	HMMSmart_ZnF_C2HC	-	no_errors
HRNR	388697	genome.wustl.edu	36	1	150454178	150454178	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2913-03A-01W-0732-08	TCGA-AB-2913-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	150454178	150454178	C	T	SNP	HRNR	NM_001009931	human	genbank	54_36p	-1	validated	missense	c.6551	p.S2184N	0.000	NULL	superfamily_SSF47473,HMMPfam_S_100,PatternScan_S100_CABP,PatternScan_EF_HAND_1,HMMPfam_SVS_QK	-	no_errors
EGLN2	112398	genome.wustl.edu	36	19	45998824	45998824	+	Silent	SNP	G	G	A			TCGA-AB-2913-03A-01W-0732-08	TCGA-AB-2913-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	45998824	45998824	G	A	SNP	EGLN2	NM_053046	human	genbank	54_36p	+1	reviewed	silent	c.507	p.A169	0.001	NULL	HMMPfam_2OG-FeII_Oxy,HMMSmart_SM00702	-	no_errors
uc010lpb.1	0	genome.wustl.edu	36	7	143142880	143142880	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2913-03A-01W-0732-08	TCGA-AB-2913-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	143142880	143142880	G	A	SNP	uc010lpb.1	ENST00000291129	human	ensembl	54_36p	+1	known	missense	c.1492	p.V498M	1.000	NULL	NULL	-	no_start_codon
ALPK3	57538	genome.wustl.edu	36	15	83202210	83202210	+	Silent	SNP	G	G	A			TCGA-AB-2913-03A-01W-0732-08	TCGA-AB-2913-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	83202210	83202210	G	A	SNP	ALPK3	NM_020778	human	genbank	54_36p	+1	validated	silent	c.3843	p.E1281	0.865	NULL	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,superfamily_Protein kinase-like (PK-like),HMMPfam_Alpha_kinase,HMMSmart_SM00811	-	no_errors
TOX3	27324	genome.wustl.edu	36	16	51037488	51037488	+	Silent	SNP	A	A	T			TCGA-AB-2913-03A-01W-0732-08	TCGA-AB-2913-11A-01W-0732-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	51037488	51037488	A	T	SNP	TOX3	NM_001080430	human	genbank	54_36p	-1	provisional	silent	c.825	p.G275	0.973	superfamily_HMG-box,HMMSmart_HMG,HMMPfam_HMG_box	superfamily_HMG-box,HMMSmart_HMG,HMMPfam_HMG_box	-	no_errors
ZNF646	9726	genome.wustl.edu	36	16	30997770	30997770	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2913-03A-01W-0732-08	TCGA-AB-2913-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	30997770	30997770	C	T	SNP	ZNF646	NM_014699	human	genbank	54_36p	+1	validated	missense	c.2624	p.A875V	0.122	NULL	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
ADAMTS17	170691	genome.wustl.edu	36	15	98406586	98406586	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2913-03A-01W-0732-08	TCGA-AB-2913-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	98406586	98406586	G	A	SNP	ADAMTS17	NM_139057	human	genbank	54_36p	-1	reviewed	missense	c.2590	p.R864W	0.986	superfamily_TSP-1 type 1 repeat,HMMPfam_TSP_1,HMMSmart_SM00209	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin,HMMSmart_SM00608,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_ADAM_spacer1,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_PLAC"	-	no_errors
TUBG2	27175	genome.wustl.edu	36	17	38071919	38071919	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2913-03A-01W-0732-08	TCGA-AB-2913-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	38071919	38071919	C	T	SNP	TUBG2	NM_016437	human	genbank	54_36p	+1	validated	missense	c.1049	p.P350L	1.000	superfamily_Tub_FtsZ_C,HMMPfam_Tubulin_C	superfamily_Tubulin_FtsZ,HMMPfam_Tubulin,PatternScan_TUBULIN,superfamily_Tub_FtsZ_C,HMMPfam_Tubulin_C	-	no_errors
RGNEF	64283	genome.wustl.edu	36	5	73172319	73172319	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2913-03A-01W-0732-08	TCGA-AB-2913-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	73172319	73172319	C	A	SNP	RGNEF	NM_001080479	human	genbank	54_36p	+1	provisional	missense	c.1405	p.Q469K	0.990	NULL	superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,HMMPfam_PH,superfamily_PH domain-like,HMMSmart_SM00233	-	no_errors
ATP2B2	491	genome.wustl.edu	36	3	10362072	10362072	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2913-03A-01W-0732-08	TCGA-AB-2913-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	10362072	10362072	G	A	SNP	ATP2B2	NM_001001331	human	genbank	54_36p	-1	reviewed	missense	c.2699	p.T900M	1.000	superfamily_Calcium ATPase transmembrane domain M	HMMPfam_Cation_ATPase_N,HMMPfam_Hydrolase,HMMPfam_Cation_ATPase_C,HMMPfam_E1-E2_ATPase,PatternScan_ATPASE_E1_E2,superfamily_HAD-like,superfamily_Calcium ATPase transduction domain A,superfamily_Metal cation-transporting ATPase ATP-binding domain N,superfamily_Calcium ATPase transmembrane domain M	-	no_errors
HSD17B1	3292	genome.wustl.edu	36	17	37960014	37960014	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2913-03A-01W-0732-08	TCGA-AB-2913-11A-01W-0732-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	37960014	37960014	A	G	SNP	HSD17B1	NM_000413	human	genbank	54_36p	+1	validated	missense	c.605	p.E202G	0.008	superfamily_NAD(P)-binding Rossmann-fold domains	superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_adh_short,PatternScan_ADH_SHORT	-	no_errors
KCNJ12	3768	genome.wustl.edu	36	17	21259375	21259375	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2913-03A-01W-0732-08	TCGA-AB-2913-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	21259375	21259375	G	A	SNP	KCNJ12	NM_021012	human	genbank	54_36p	+1	validated	missense	c.128	p.R43H	1.000	HMMPfam_IRK_N,superfamily_SSF81324	HMMPfam_IRK,HMMPfam_IRK_N,superfamily_Ig_E-set,superfamily_SSF81324	-	no_errors
FLT3	2322	genome.wustl.edu	36	13	27506240	27506241	+	In_Frame_Ins	INS	-	-	AAACTCCCATTTGAGATCATATTCATATTCTCTGAAATCAACGTAGAAGTACTCATTATCTGAGGA			TCGA-AB-2913-03A-01W-0732-08	TCGA-AB-2913-11A-01W-0732-08					-	-	Verified	Valid	Somatic		Capture				Illumina GAIIx																ITD	NA	NA	NA	NA	NA
ADAMTS9	56999	genome.wustl.edu	36	3	64507612	64507612	+	Silent	SNP	A	A	T			TCGA-AB-2913-03A-01W-0732-08	TCGA-AB-2913-11A-01W-0732-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	64507612	64507612	A	T	SNP	ADAMTS9	NM_182920	human	genbank	54_36p	-1	reviewed	silent	c.4926	p.I1642	1.000	superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_ADAM_spacer1,HMMPfam_GON"	-	no_errors
ZNF548	147694	genome.wustl.edu	36	19	62603022	62603022	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2913-03A-01W-0732-08	TCGA-AB-2913-11A-01W-0732-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	62603022	62603022	A	G	SNP	ZNF548	NM_152909	human	genbank	54_36p	+1	provisional	missense	c.1555	p.T519A	0.000	NULL	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
NPM1	4869	genome.wustl.edu	36	5	170770152	170770153	+	Frame_Shift_Ins	INS	-	-	TCTG			TCGA-AB-2913-03A-01W-0732-08	TCGA-AB-2913-11A-01W-0732-08	-	-			-	-	Verified	Valid	Somatic		Capture				Illumina GAIIx	5	170770152	170770153	0	TCTG	INS	NPM1	NM_002520	human	genbank	54_36p	1	validated	frame_shift_ins	c.863_864	p.W288fs	1.000:1.000	NULL	Nucleoplasmin;HMMPfam_Nucleoplasmin;Nucleoplasmin-like	-	NA
LOC727768	727768	genome.wustl.edu	36	Y	11772729	11772729	+	RNA	SNP	C	C	T			TCGA-AB-2913-03A-01W-0732-08	TCGA-AB-2913-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	Y	11772729	11772729	C	T	SNP	LOC727768	XR_042307	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.999	-	-	-	pseudogene
TMEM104	54868	genome.wustl.edu	36	17	70302819	70302819	+	Silent	SNP	G	G	A			TCGA-AB-2913-03A-01W-0732-08	TCGA-AB-2913-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	70302819	70302819	G	A	SNP	TMEM104	NM_017728	human	genbank	54_36p	+1	validated	silent	c.501	p.V167	1.000	NULL	HMMPfam_Aa_trans	-	no_errors
ARSD	414	genome.wustl.edu	36	X	2845863	2845863	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2913-03A-01W-0732-08	TCGA-AB-2913-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	2845863	2845863	G	T	SNP	ARSD	NM_001669	human	genbank	54_36p	-1	reviewed	missense	c.845	p.A282D	0.993	HMMPfam_Sulfatase,superfamily_Alkaline phosphatase-like	HMMPfam_Sulfatase,PatternScan_SULFATASE_2,PatternScan_SULFATASE_1,superfamily_Alkaline phosphatase-like	-	no_errors
LOC647157	647157	genome.wustl.edu	36	16	32349594	32349594	+	RNA	SNP	G	G	A			TCGA-AB-2913-03A-01W-0732-08	TCGA-AB-2913-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	32349594	32349594	G	A	SNP	LOC647157	XR_017478	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.932	-	-	-	pseudogene
PCDHGA6	56109	genome.wustl.edu	36	5	140735955	140735955	+	Silent	SNP	C	C	T			TCGA-AB-2913-03A-01W-0732-08	TCGA-AB-2913-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	140735955	140735955	C	T	SNP	PCDHGA6	NM_018919	human	genbank	54_36p	+1	reviewed	silent	c.2121	p.F707	0.020	NULL	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like	-	no_errors
PLIN1	5346	genome.wustl.edu	36	15	88014347	88014347	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2913-03A-01W-0732-08	TCGA-AB-2913-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	88014347	88014347	C	A	SNP	PLIN	NM_002666	human	genbank	54_36p	-1	reviewed	missense	c.466	p.V156L	0.229	HMMPfam_Perilipin	HMMPfam_Perilipin	-	no_errors
