Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
HECW1	23072	genome.wustl.edu	36	7	43567983	43567983	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2925-03A-01W-0732-08	TCGA-AB-2925-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	43567983	43567983	C	T	SNP	HECW1	NM_015052	human	genbank	54_36p	+1	validated	missense	c.4754	p.S1585L	0.985	HMMPfam_HECT,HMMSmart_HECTc,superfamily_HECT	HMMPfam_C2,HMMSmart_C2,HMMPfam_HECT,HMMSmart_HECTc,superfamily_HECT,HMMPfam_WW,HMMSmart_WW,PatternScan_WW_DOMAIN_1,superfamily_WW_Rsp5_WWP,superfamily_C2_CaLB	-	no_errors
TTN	7273	genome.wustl.edu	36	2	179224470	179224470	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2925-03A-01W-0732-08	TCGA-AB-2925-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	179224470	179224470	C	T	SNP	TTN	ENST00000342992	human	ensembl	54_36p	-1	known	missense	c.2653	p.V885M	0.999	superfamily_DH-domain,HMMPfam_PPAK	superfamily_DH-domain,HMMSmart_IGc2,HMMSmart_IG,HMMPfam_fn3,HMMSmart_FN3,HMMPfam_PPAK,superfamily_FN_III-like,superfamily_ConA_like_lec_gl,superfamily_Man6php_recept,HMMPfam_I-set,HMMPfam_ig,PatternScan_FGGY_KINASES_1,superfamily_SSF48726	-	no_stop_codon
FAM154B	283726	genome.wustl.edu	36	15	80361580	80361580	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2925-03A-01W-0732-08	TCGA-AB-2925-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	80361580	80361580	C	T	SNP	FAM154B	NM_001008226	human	genbank	54_36p	+1	predicted	missense	c.319	p.P107S	0.990	NULL	NULL	-	no_errors
DNMT3A	1788	genome.wustl.edu	36	2	25310746	25310746	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2925-03A-01W-0732-08	TCGA-AB-2925-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	25310746	25310746	C	T	SNP	DNMT3A	NM_022552	human	genbank	54_36p	-1	reviewed	missense	c.2645	p.R882H	1.000	superfamily_S-adenosyl-L-methionine-dependent methyltransferases	HMMPfam_PWWP,HMMSmart_SM00293,HMMPfam_DNA_methylase,superfamily_FYVE/PHD zinc finger,PatternScan_C5_MTASE_1,superfamily_S-adenosyl-L-methionine-dependent methyltransferases,superfamily_Tudor/PWWP/MBT	-	no_errors
FLT3	2322	genome.wustl.edu	36	13	27506255	27506256	+	In_Frame_Ins	INS	-	-	ATCATATTCATATTCTCTGAAATCAACGTAGAAGTACTCATT			TCGA-AB-2925-03A-01W-0732-08	TCGA-AB-2925-11A-01W-0732-08					-	-	Verified	Valid	Somatic		Capture				Illumina GAIIx																ITD	NA	NA	NA	NA	NA
TBL2	26608	genome.wustl.edu	36	7	72630794	72630794	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2925-03A-01W-0732-08	TCGA-AB-2925-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	72630794	72630794	C	G	SNP	TBL2	NM_012453	human	genbank	54_36p	-1	reviewed	missense	c.22	p.E8Q	0.518	NULL	HMMSmart_WD40,HMMPfam_WD40,superfamily_WD40_like,PatternScan_WD_REPEATS_1	-	no_errors
CACNA1B	774	genome.wustl.edu	36	9	140135748	140135748	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2925-03A-01W-0732-08	TCGA-AB-2925-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	140135748	140135748	G	T	SNP	CACNA1B	NM_000718	human	genbank	54_36p	+1	validated	missense	c.6496	p.G2166C	1.000	NULL	HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ,superfamily_Voltage-gated potassium channels	-	no_errors
ATE1	11101	genome.wustl.edu	36	10	123677446	123677446	+	Silent	SNP	G	G	A			TCGA-AB-2925-03A-01W-0732-08	TCGA-AB-2925-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	123677446	123677446	G	A	SNP	ATE1	NM_001001976	human	genbank	54_36p	-1	reviewed	silent	c.9	p.F3	0.444	NULL	HMMPfam_ATE_N,HMMPfam_ATE_C	-	no_errors
BMP10	27302	genome.wustl.edu	36	2	68946310	68946310	+	Missense_Mutation	SNP	A	A	T			TCGA-AB-2925-03A-01W-0732-08	TCGA-AB-2925-11A-01W-0732-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	68946310	68946310	A	T	SNP	BMP10	NM_014482	human	genbank	54_36p	-1	reviewed	missense	c.1232	p.F411Y	1.000	superfamily_SSF57501,HMMPfam_TGF_beta,HMMSmart_TGFB	HMMPfam_TGFb_propeptide,superfamily_SSF57501,HMMPfam_TGF_beta,HMMSmart_TGFB,PatternScan_TGF_BETA_1	-	no_errors
LOC647595	647595	genome.wustl.edu	36	9	106779	106779	+	RNA	SNP	G	G	A			TCGA-AB-2925-03A-01W-0732-08	TCGA-AB-2925-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	106779	106779	G	A	SNP	LOC647595	XR_018156	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.006	-	-	-	pseudogene
CFHR2	3080	genome.wustl.edu	36	1	195185236	195185236	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2925-03A-01W-0732-08	TCGA-AB-2925-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	195185236	195185236	C	G	SNP	CFHR2	NM_005666	human	genbank	54_36p	+1	validated	missense	c.87	p.N29K	0.059	superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032	superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032	-	no_errors
SLC27A6	28965	genome.wustl.edu	36	5	128379505	128379505	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2925-03A-01W-0732-08	TCGA-AB-2925-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	128379505	128379505	G	A	SNP	SLC27A6	NM_001017372	human	genbank	54_36p	+1	reviewed	missense	c.998	p.R333H	0.465	superfamily_SSF56801,HMMPfam_AMP-binding	superfamily_SSF56801,HMMPfam_AMP-binding,PatternScan_AMP_BINDING	-	no_errors
RFC3	5983	genome.wustl.edu	36	13	33302083	33302083	+	Missense_Mutation	SNP	A	A	C			TCGA-AB-2925-03A-01W-0732-08	TCGA-AB-2925-11A-01W-0732-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	13	33302083	33302083	A	C	SNP	RFC3	NM_002915	human	genbank	54_36p	+1	reviewed	missense	c.502	p.T168P	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,superfamily_DNA polymerase III clamp loader subunits C-terminal domain,HMMPfam_RFC-E_C	-	no_errors
GABBR1	2550	genome.wustl.edu	36	6	29689157	29689157	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2925-03A-01W-0732-08	TCGA-AB-2925-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	29689157	29689157	C	A	SNP	GABBR1	NM_001470	human	genbank	54_36p	-1	reviewed	missense	c.1408	p.A470S	1.000	superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor	superfamily_Complement control module/SCR domain,HMMSmart_SM00032,HMMPfam_Sushi,superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor,HMMPfam_7tm_3	-	no_errors
NPM1	4869	genome.wustl.edu	36	5	170770152	170770153	+	Frame_Shift_Ins	INS	-	-	TCTG			TCGA-AB-2925-03A-01W-0732-08	TCGA-AB-2925-11A-01W-0732-08	-	-			-	-	Verified	Valid	Somatic		Capture				Illumina GAIIx	5	170770152	170770153	0	TCTG	INS	NPM1	NM_002520	human	genbank	54_36p	1	validated	frame_shift_ins	c.863_864	p.W288fs	1.000:1.000	NULL	Nucleoplasmin;HMMPfam_Nucleoplasmin;Nucleoplasmin-like	-	NA
KPRP	448834	genome.wustl.edu	36	1	151000425	151000425	+	Missense_Mutation	SNP	T	T	G			TCGA-AB-2925-03A-01W-0732-08	TCGA-AB-2925-11A-01W-0732-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	151000425	151000425	T	G	SNP	KPRP	NM_001025231	human	genbank	54_36p	+1	provisional	missense	c.1737	p.F579L	0.976	NULL	NULL	-	no_errors
CSMD1	64478	genome.wustl.edu	36	8	3068744	3068744	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2925-03A-01W-0732-08	TCGA-AB-2925-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	3068744	3068744	G	T	SNP	CSMD1	NM_033225	human	genbank	54_36p	-1	validated	missense	c.4402	p.L1468I	1.000	NULL	HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,superfamily_Complement control module/SCR domain	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
GATA2	2624	genome.wustl.edu	36	3	129682841	129682841	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2925-03A-01W-0732-08	TCGA-AB-2925-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	129682841	129682841	G	A	SNP	GATA2	NM_032638	human	genbank	54_36p	-1	reviewed	missense	c.1154	p.P385L	1.000	HMMSmart_ZnF_GATA,superfamily_SSF57716	superfamily_SSF57716,HMMSmart_ZnF_GATA,PatternScan_GATA_ZN_FINGER_1,HMMPfam_GATA	-	no_errors
GRM3	2913	genome.wustl.edu	36	7	86253906	86253906	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2925-03A-01W-0732-08	TCGA-AB-2925-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	86253906	86253906	G	A	SNP	GRM3	NM_000840	human	genbank	54_36p	+1	reviewed	missense	c.862	p.A288T	0.999	superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor	superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor,PatternScan_G_PROTEIN_RECEP_F3_1,HMMPfam_NCD3G,PatternScan_G_PROTEIN_RECEP_F3_2,HMMPfam_7tm_3,PatternScan_G_PROTEIN_RECEP_F3_3	-	no_errors
LOC100132973	100132973	genome.wustl.edu	36	19	9154524	9154525	+	Frame_Shift_Ins	INS	-	-	G			TCGA-AB-2925-03A-01W-0732-08	TCGA-AB-2925-11A-01W-0732-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	9154524	9154525	-	G	INS	LOC100132973	XM_001726567	human	genbank	54_36p	-1	model	frame_shift_ins	c.201_200	p.H68fs	0.999:1.000	HMMSmart_SM00512,HMMPfam_Skp1_POZ,superfamily_POZ domain	HMMSmart_SM00512,HMMPfam_Skp1_POZ,superfamily_POZ domain	-	no_errors
