Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
SLC35G6	643664	genome.wustl.edu	36	17	7326900	7326900	+	Silent	SNP	G	G	C			TCGA-AB-2926-03A-01W-0732-08	TCGA-AB-2926-11A-01W-0761-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	7326900	7326900	G	C	SNP	AMAC1L3	NM_001102614	human	genbank	54_36p	+1	provisional	silent	c.873	p.V291	1.000	HMMPfam_DUF6,superfamily_SSF103481	HMMPfam_DUF6,superfamily_SSF103481	-	no_errors
SBF2	81846	genome.wustl.edu	36	11	9970647	9970647	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2926-03A-01W-0732-08	TCGA-AB-2926-11A-01W-0761-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	9970647	9970647	C	T	SNP	SBF2	NM_030962	human	genbank	54_36p	-1	reviewed	missense	c.1187	p.R396H	1.000	HMMPfam_dDENN,HMMSmart_SM00801	HMMPfam_uDENN,HMMSmart_SM00800,HMMPfam_DENN,HMMSmart_SM00799,HMMPfam_dDENN,HMMSmart_SM00801,HMMPfam_GRAM,HMMSmart_SM00568,superfamily_PH domain-like,superfamily_(Phosphotyrosine protein) phosphatases II,HMMPfam_Myotub-related,HMMPfam_PH,HMMSmart_SM00233	-	no_errors
PLIN4	729359	genome.wustl.edu	36	19	4463082	4463082	+	Silent	SNP	G	G	A			TCGA-AB-2926-03A-01W-0732-08	TCGA-AB-2926-11A-01W-0761-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	4463082	4463082	G	A	SNP	KIAA1881	NM_001080400	human	genbank	54_36p	-1	provisional	silent	c.1848	p.T616	0.967	NULL	superfamily_Mannose-6-phosphate receptor binding protein 1 (Tip47) C-terminal domain	-	no_errors
ALDH3B2	222	genome.wustl.edu	36	11	67189375	67189375	+	Silent	SNP	G	G	A			TCGA-AB-2926-03A-01W-0732-08	TCGA-AB-2926-11A-01W-0761-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	67189375	67189375	G	A	SNP	ALDH3B2	NM_000695	human	genbank	54_36p	-1	reviewed	silent	c.663	p.R221	0.000	HMMPfam_Aldedh,superfamily_ALDH-like	HMMPfam_Aldedh,PatternScan_ALDEHYDE_DEHYDR_CYS,PatternScan_ALDEHYDE_DEHYDR_GLU,superfamily_ALDH-like	-	no_errors
MIR142	406934	genome.wustl.edu	36	17	53763622	53763622	+	RNA	SNP	A	A	G			TCGA-AB-2926-03A-01W-0732-08	TCGA-AB-2926-11A-01W-0761-09	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	53763622	53763622	A	G	SNP	MIRN142	ENST00000384835	human	ensembl	54_36p	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors
MUC5B	727897	genome.wustl.edu	36	11	1225237	1225237	+	Silent	SNP	G	G	A			TCGA-AB-2926-03A-01W-0732-08	TCGA-AB-2926-11A-01W-0761-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	1225237	1225237	G	A	SNP	MUC5B	NM_002458	human	genbank	54_36p	+1	validated	silent	c.10560	p.R3520	0.000	NULL	HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,HMMPfam_VWD,HMMSmart_SM00216,superfamily_Serine proterase inhibitors,HMMSmart_SM00041,PatternScan_CTCK_1,HMMPfam_Cys_knot,HMMSmart_SM00215,superfamily_PMP inhibitors,HMMPfam_C8,HMMPfam_TIL	-	no_errors
CXCL10	3627	genome.wustl.edu	36	4	77162918	77162918	+	Silent	SNP	T	T	C			TCGA-AB-2926-03A-01W-0732-08	TCGA-AB-2926-11A-01W-0761-09	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	77162918	77162918	T	C	SNP	CXCL10	NM_001565	human	genbank	54_36p	-1	reviewed	silent	c.138	p.E46	0.669	HMMPfam_IL8,superfamily_Chemokine_IL8,HMMSmart_SCY,PatternScan_SMALL_CYTOKINES_CXC	HMMPfam_IL8,superfamily_Chemokine_IL8,HMMSmart_SCY,PatternScan_SMALL_CYTOKINES_CXC	-	no_errors
DDX17	10521	genome.wustl.edu	36	22	37224035	37224035	+	Splice_Site	SNP	C	C	T			TCGA-AB-2926-03A-01W-0732-08	TCGA-AB-2926-11A-01W-0761-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	22	37224035	37224035	C	T	SNP	DDX17	NM_001098504	human	genbank	54_36p	-1	reviewed	splice_site	c.738+1	e5+1	1.000	-	-	-	no_errors
EEF1A1	1915	genome.wustl.edu	36	6	74284661	74284661	+	Silent	SNP	A	A	C			TCGA-AB-2926-03A-01W-0732-08	TCGA-AB-2926-11A-01W-0761-09	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	74284661	74284661	A	C	SNP	EEF1A1	NM_001402	human	genbank	54_36p	-1	reviewed	silent	c.1077	p.P359	1.000	HMMPfam_GTP_EFTU_D3,superfamily_EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain	HMMPfam_GTP_EFTU,PatternScan_EFACTOR_GTP,HMMPfam_GTP_EFTU_D3,HMMPfam_GTP_EFTU_D2,superfamily_Translation proteins,superfamily_EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ZNF642	339559	genome.wustl.edu	36	1	40734107	40734107	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2926-03A-01W-0732-08	TCGA-AB-2926-11A-01W-0761-09	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	40734107	40734107	A	G	SNP	ZNF642	NM_198494	human	genbank	54_36p	+1	validated	missense	c.1370	p.H457R	0.957	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
KIF27	55582	genome.wustl.edu	36	9	85707986	85707986	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2926-03A-01W-0732-08	TCGA-AB-2926-11A-01W-0761-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	85707986	85707986	C	T	SNP	KIF27	NM_017576	human	genbank	54_36p	-1	provisional	missense	c.1267	p.V423I	0.878	NULL	HMMPfam_Kinesin,HMMSmart_SM00129,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
WNK1	65125	genome.wustl.edu	36	12	840502	840502	+	Missense_Mutation	SNP	A	A	C			TCGA-AB-2926-03A-01W-0732-08	TCGA-AB-2926-11A-01W-0761-09	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	840502	840502	A	C	SNP	WNK1	NM_018979	human	genbank	54_36p	+1	validated	missense	c.1683	p.R561S	0.989	superfamily_Kinase_like	superfamily_Kinase_like,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST	-	no_errors
uc010lpl.1	0	genome.wustl.edu	36	7	149111691	149111691	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2926-03A-01W-0732-08	TCGA-AB-2926-11A-01W-0761-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	149111691	149111691	C	T	SNP	uc010lpl.1	ENST00000360022	human	ensembl	54_36p	+1	known	missense	c.469	p.L157F	0.998	HMMPfam_C8	HMMPfam_VWD,HMMPfam_C8,superfamily_Cysrich_TIL,superfamily_PMP_SGCI	-	no_errors
FLT3	2322	genome.wustl.edu	36	13	27490642	27490642	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2926-03A-01W-0732-08	TCGA-AB-2926-11A-01W-0761-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	13	27490642	27490642	C	A	SNP	FLT3	NM_004119	human	genbank	54_36p	-1	reviewed	missense	c.2503	p.D835Y	1.000	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_RECEPTOR_TYR_KIN_III,PatternScan_PROTEIN_KINASE_TYR,superfamily_Kinase_like,HMMPfam_ig,PatternScan_PROTEIN_KINASE_ATP,superfamily_SSF48726	-	no_errors
PARP4	143	genome.wustl.edu	36	13	23956867	23956867	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2926-03A-01W-0732-08	TCGA-AB-2926-11A-01W-0761-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	13	23956867	23956867	C	T	SNP	PARP4	NM_006437	human	genbank	54_36p	-1	reviewed	missense	c.1372	p.V458I	0.975	HMMPfam_PARP,superfamily_SSF56399	HMMPfam_BRCT,superfamily_BRCT,HMMSmart_BRCT,superfamily_PARP_reg,HMMPfam_PARP,superfamily_SSF56399,HMMSmart_VIT,HMMPfam_VIT,superfamily_SSF53300,HMMSmart_VWA,HMMPfam_VWA	-	no_errors
AKR7L	246181	genome.wustl.edu	36	1	19469599	19469599	+	Missense_Mutation	SNP	G	G	C	rs76862688	byCluster;byFrequency;by1000genomes	TCGA-AB-2926-03A-01W-0732-08	TCGA-AB-2926-11A-01W-0761-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	19469599	19469599	G	C	SNP	AKR7L	NM_201252	human	genbank	54_36p	-1	reviewed	missense	c.103	p.P35A	1.000	NULL	superfamily_Aldo/ket_red	-	no_errors
FLJ43860	389690	genome.wustl.edu	36	8	142556720	142556720	+	Silent	SNP	A	A	G			TCGA-AB-2926-03A-01W-0732-08	TCGA-AB-2926-11A-01W-0761-09	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	142556720	142556720	A	G	SNP	FLJ43860	NM_207414	human	genbank	54_36p	-1	validated	silent	c.1410	p.S470	0.186	NULL	HMMPfam_HEAT,superfamily_ARM repeat	-	pseudogene
ENSG00000211970	0	genome.wustl.edu	36	14	106166468	106166468	+	Silent	SNP	G	G	A			TCGA-AB-2926-03A-01W-0732-08	TCGA-AB-2926-11A-01W-0761-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	14	106166468	106166468	G	A	SNP	ENSG00000211970	ENST00000390630	human	ensembl	54_36p	-1	known	silent	c.57	p.S19	0.138	NULL	HMMPfam_V-set,superfamily_SSF48726,HMMSmart_IGv	-	no_stop_codon:bad_bp_length_for_coding_region
KIR2DL3	3804	genome.wustl.edu	36	19	59954938	59954938	+	Silent	SNP	G	G	C			TCGA-AB-2926-03A-01W-0732-08	TCGA-AB-2926-11A-01W-0761-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	59954938	59954938	G	C	SNP	KIR2DL3	NM_015868	human	genbank	54_36p	+1	reviewed	silent	c.741	p.L247	0.029	NULL	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMPfam_ig	-	no_errors
ENSG00000168992	0	genome.wustl.edu	36	2	95576232	95576232	+	Silent	SNP	C	C	T			TCGA-AB-2926-03A-01W-0732-08	TCGA-AB-2926-11A-01W-0761-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	95576232	95576232	C	T	SNP	ENSG00000168992	ENST00000306515	human	ensembl	54_36p	+1	known	silent	c.177	p.T59	0.994	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,superfamily_SSF81321	-	no_errors
TMSL3	7117	genome.wustl.edu	36	4	91979108	91979108	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2926-03A-01W-0732-08	TCGA-AB-2926-11A-01W-0761-09	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	91979108	91979108	A	G	SNP	TMSL3	NM_183049	human	genbank	54_36p	-1	validated	missense	c.104	p.I35T	1.000	HMMPfam_Thymosin,HMMSmart_THY	HMMPfam_Thymosin,HMMSmart_THY,PatternScan_THYMOSIN_B4	-	no_errors
RBBP4	5928	genome.wustl.edu	36	1	32910659	32910659	+	Missense_Mutation	SNP	G	G	A	rs76030726	byCluster;by1000genomes	TCGA-AB-2926-03A-01W-0732-08	TCGA-AB-2926-11A-01W-0761-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	32910659	32910659	G	A	SNP	RBBP4	NM_005610	human	genbank	54_36p	+1	reviewed	missense	c.988	p.E330K	1.000	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40	HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
ITGAV	3685	genome.wustl.edu	36	2	187195324	187195324	+	Nonsense_Mutation	SNP	T	T	A			TCGA-AB-2926-03A-01W-0732-08	TCGA-AB-2926-11A-01W-0761-09	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	187195324	187195324	T	A	SNP	ITGAV	NM_002210	human	genbank	54_36p	+1	reviewed	nonsense	c.330	p.Y110*	1.000	superfamily_Integrin alpha N-terminal domain	superfamily_Integrin alpha N-terminal domain,HMMSmart_SM00191,HMMPfam_FG-GAP,HMMPfam_Integrin_alpha2,superfamily_Integrin domains,PatternScan_INTEGRIN_ALPHA,HMMPfam_Integrin_alpha	-	no_errors
AKAP5	9495	genome.wustl.edu	36	14	64005169	64005169	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2926-03A-01W-0732-08	TCGA-AB-2926-11A-01W-0761-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	14	64005169	64005169	G	A	SNP	AKAP5	NM_004857	human	genbank	54_36p	+1	reviewed	missense	c.304	p.E102K	0.265	HMMPfam_WSK	HMMPfam_WSK,HMMPfam_RII_binding_1	-	no_errors
DDX53	168400	genome.wustl.edu	36	X	22928217	22928217	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2926-03A-01W-0732-08	TCGA-AB-2926-11A-01W-0761-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	22928217	22928217	C	T	SNP	DDX53	NM_182699	human	genbank	54_36p	+1	validated	missense	c.122	p.P41L	0.001	superfamily_SSF54791	superfamily_SSF54791,HMMSmart_KH,HMMPfam_KH_1,superfamily_SSF52540,HMMSmart_DEXDc,HMMPfam_DEAD,PatternScan_DEAD_ATP_HELICASE,HMMSmart_HELICc,HMMPfam_Helicase_C	-	no_errors
GCLM	2730	genome.wustl.edu	36	1	94134956	94134956	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2926-03A-01W-0732-08	TCGA-AB-2926-11A-01W-0761-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	94134956	94134956	C	T	SNP	GCLM	NM_002061	human	genbank	54_36p	-1	reviewed	missense	c.346	p.V116I	0.981	superfamily_NAD(P)-linked oxidoreductase	superfamily_NAD(P)-linked oxidoreductase,HMMPfam_Aldo_ket_red	-	no_errors
UGT2B28	54490	genome.wustl.edu	36	4	70190005	70190005	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2926-03A-01W-0732-08	TCGA-AB-2926-11A-01W-0761-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	70190005	70190005	G	A	SNP	UGT2B28	NM_053039	human	genbank	54_36p	+1	provisional	missense	c.1036	p.A346T	0.038	superfamily_UDP-Glycosyltransferase/glycogen phosphorylase,HMMPfam_UDPGT	superfamily_UDP-Glycosyltransferase/glycogen phosphorylase,HMMPfam_UDPGT,PatternScan_UDPGT	-	no_errors
IDH1	3417	genome.wustl.edu	36	2	208821358	208821358	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2926-03A-01W-0732-08	TCGA-AB-2926-11A-01W-0761-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	208821358	208821358	G	A	SNP	IDH1	NM_005896	human	genbank	54_36p	-1	reviewed	missense	c.394	p.R132C	1.000	HMMPfam_Iso_dh,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like	HMMPfam_Iso_dh,PatternScan_IDH_IMDH,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like	-	no_errors
