Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
LOC646755	646755	genome.wustl.edu	36	13	30014522	30014522	+	RNA	SNP	T	T	C			TCGA-AB-2929-03A-01W-0732-08	TCGA-AB-2929-11A-01W-0732-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	13	30014522	30014522	T	C	SNP	LOC646755	XR_037386	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
ITIH2	3698	genome.wustl.edu	36	10	7831225	7831225	+	Silent	SNP	C	C	T			TCGA-AB-2929-03A-01W-0732-08	TCGA-AB-2929-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	7831225	7831225	C	T	SNP	ITIH2	NM_002216	human	genbank	54_36p	+1	validated	silent	c.2763	p.N921	1.000	HMMPfam_ITI_HC_C	HMMSmart_VIT,HMMPfam_VIT,superfamily_SSF53300,HMMSmart_VWA,HMMPfam_VWA,HMMPfam_ITI_HC_C	-	no_errors
CD70	970	genome.wustl.edu	36	19	6537144	6537144	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2929-03A-01W-0732-08	TCGA-AB-2929-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	6537144	6537144	G	A	SNP	CD70	NM_001252	human	genbank	54_36p	-1	reviewed	missense	c.469	p.R157C	0.958	superfamily_TNF-like,HMMSmart_SM00207,HMMPfam_TNF	superfamily_TNF-like,HMMSmart_SM00207,HMMPfam_TNF,PatternScan_TNF_1	-	no_errors
CYP21A2	1589	genome.wustl.edu	36	6	32114865	32114865	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2929-03A-01W-0732-08	TCGA-AB-2929-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	32114865	32114865	G	A	SNP	CYP21A2	NM_000500	human	genbank	54_36p	+1	reviewed	missense	c.308	p.R103K	0.003	HMMPfam_p450,superfamily_Cytochrome_P450	HMMPfam_p450,superfamily_Cytochrome_P450,PatternScan_CYTOCHROME_P450	-	no_errors
CD74	972	genome.wustl.edu	36	5	149764445	149764445	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2929-03A-01W-0732-08	TCGA-AB-2929-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	149764445	149764445	G	A	SNP	CD74	NM_001025159	human	genbank	54_36p	-1	validated	missense	c.616	p.P206S	0.002	superfamily_Class II MHC-associated invariant chain ectoplasmic trimerization domain,HMMPfam_MHCassoc_trimer,superfamily_Thyroglobulin type-1 domain	HMMPfam_MHC2-interact,superfamily_Class II MHC-associated invariant chain ectoplasmic trimerization domain,HMMPfam_MHCassoc_trimer,superfamily_Thyroglobulin type-1 domain,HMMPfam_Thyroglobulin_1,PatternScan_THYROGLOBULIN_1_1,HMMSmart_SM00211	-	no_errors
BPIFC	254240	genome.wustl.edu	36	22	31163840	31163840	+	Splice_Site	SNP	T	T	A			TCGA-AB-2929-03A-01W-0732-08	TCGA-AB-2929-11A-01W-0732-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	22	31163840	31163840	T	A	SNP	BPIL2	NM_174932	human	genbank	54_36p	-1	provisional	splice_site	c.656-2	e7-2	0.992	-	-	-	no_errors
E2F8	79733	genome.wustl.edu	36	11	19208937	19208937	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2929-03A-01W-0732-08	TCGA-AB-2929-11A-01W-0732-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	19208937	19208937	A	G	SNP	E2F8	NM_024680	human	genbank	54_36p	-1	validated	missense	c.1087	p.F363L	0.000	NULL	"HMMPfam_E2F_TDP,superfamily_""Winged helix"" DNA-binding domain"	-	no_errors
HIVEP1	3096	genome.wustl.edu	36	6	12233870	12233870	+	Silent	SNP	G	G	A			TCGA-AB-2929-03A-01W-0732-08	TCGA-AB-2929-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	12233870	12233870	G	A	SNP	HIVEP1	NM_002114	human	genbank	54_36p	+1	validated	silent	c.5856	p.S1952	0.006	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
SYTL5	94122	genome.wustl.edu	36	X	37820855	37820855	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2929-03A-01W-0732-08	TCGA-AB-2929-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	37820855	37820855	G	A	SNP	SYTL5	NM_138780	human	genbank	54_36p	+1	provisional	missense	c.646	p.G216S	0.109	HMMPfam_RPH3A_effector	HMMPfam_RPH3A_effector,superfamily_FYVE_PHD_ZnF,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2	-	no_errors
TPH1	7166	genome.wustl.edu	36	11	18001042	18001042	+	Nonsense_Mutation	SNP	C	C	A			TCGA-AB-2929-03A-01W-0732-08	TCGA-AB-2929-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	18001042	18001042	C	A	SNP	TPH1	NM_004179	human	genbank	54_36p	-1	provisional	nonsense	c.1039	p.G347*	1.000	superfamily_Aromatic aminoacid monoxygenases catalytic and oligomerization domains,HMMPfam_Biopterin_H	superfamily_ACT-like,HMMPfam_ACT,superfamily_Aromatic aminoacid monoxygenases catalytic and oligomerization domains,HMMPfam_Biopterin_H,PatternScan_BIOPTERIN_HYDROXYL	-	no_errors
BRCC3	79184	genome.wustl.edu	36	X	153958684	153958684	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AB-2929-03A-01W-0732-08	TCGA-AB-2929-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	153958684	153958684	C	T	SNP	BRCC3	NM_024332	human	genbank	54_36p	+1	reviewed	nonsense	c.241	p.R81*	1.000	HMMPfam_Mov34,superfamily_JAB1/MPN domain,HMMSmart_SM00232	HMMPfam_Mov34,superfamily_JAB1/MPN domain,HMMSmart_SM00232	-	no_errors
LOC728640	728640	genome.wustl.edu	36	10	60145690	60145690	+	RNA	SNP	G	G	T			TCGA-AB-2929-03A-01W-0732-08	TCGA-AB-2929-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	60145690	60145690	G	T	SNP	LOC728640	XR_015474	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.999	-	-	-	pseudogene
LOC100132739	100132739	genome.wustl.edu	36	3	148610461	148610461	+	Silent	SNP	C	C	T			TCGA-AB-2929-03A-01W-0732-08	TCGA-AB-2929-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	148610461	148610461	C	T	SNP	LOC100132739	XM_001718465	human	genbank	54_36p	-1	model	silent	c.750	p.G250	0.361	NULL	NULL	-	no_errors
TNC	3371	genome.wustl.edu	36	9	116843181	116843181	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2929-03A-01W-0732-08	TCGA-AB-2929-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	116843181	116843181	G	A	SNP	TNC	NM_002160	human	genbank	54_36p	-1	validated	missense	c.5252	p.T1751I	0.001	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like	HMMPfam_Fibrinogen_C,HMMSmart_FBG,superfamily_Fibrinogen_a/b/g_C,HMMPfam_fn3,HMMSmart_FN3,HMMPfam_EGF,HMMSmart_EGF,superfamily_FN_III-like,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_2	-	no_errors
LOC644504	644504	genome.wustl.edu	36	X	105457450	105457450	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2929-03A-01W-0732-08	TCGA-AB-2929-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	105457450	105457450	G	A	SNP	LOC644504	XM_001128075	human	genbank	54_36p	+1	model	missense	c.25	p.E9K	1.000	HMMPfam_CHGN,superfamily_Nucleotide-diphospho-sugar transferases	HMMPfam_CHGN,superfamily_Nucleotide-diphospho-sugar transferases	-	no_errors
OR8B12	219858	genome.wustl.edu	36	11	123918146	123918146	+	Silent	SNP	G	G	A			TCGA-AB-2929-03A-01W-0732-08	TCGA-AB-2929-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	123918146	123918146	G	A	SNP	OR8B12	NM_001005195	human	genbank	54_36p	-1	provisional	silent	c.615	p.D205	0.006	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
NTSR2	23620	genome.wustl.edu	36	2	11717629	11717629	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2929-03A-01W-0732-08	TCGA-AB-2929-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	11717629	11717629	G	A	SNP	NTSR2	NM_012344	human	genbank	54_36p	-1	reviewed	missense	c.980	p.A327V	0.001	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
RTN4	57142	genome.wustl.edu	36	2	55130730	55130730	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2929-03A-01W-0732-08	TCGA-AB-2929-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	55130730	55130730	C	T	SNP	RTN4	NM_020532	human	genbank	54_36p	-1	reviewed	missense	c.211	p.A71T	0.664	NULL	HMMPfam_Reticulon	-	no_errors
LOC440419	440419	genome.wustl.edu	36	17	22781180	22781180	+	RNA	SNP	G	G	A			TCGA-AB-2929-03A-01W-0732-08	TCGA-AB-2929-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	22781180	22781180	G	A	SNP	LOC440419	XR_040504	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.812	-	-	-	no_errors
ALDH1A3	220	genome.wustl.edu	36	15	99245387	99245387	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2929-03A-01W-0732-08	TCGA-AB-2929-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	99245387	99245387	C	T	SNP	ALDH1A3	NM_000693	human	genbank	54_36p	+1	reviewed	missense	c.292	p.R98W	0.960	superfamily_Aldehyde_DH/Histidinol_DH,HMMPfam_Aldedh	superfamily_Aldehyde_DH/Histidinol_DH,HMMPfam_Aldedh,PatternScan_ALDEHYDE_DEHYDR_GLU,PatternScan_ALDEHYDE_DEHYDR_CYS	-	no_errors
KRAS	3845	genome.wustl.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2929-03A-01W-0732-08	TCGA-AB-2929-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	25289551	25289551	C	T	SNP	KRAS	NM_033360	human	genbank	54_36p	-1	reviewed	missense	c.35	p.G12D	1.000	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
SF3B1	23451	genome.wustl.edu	36	2	197975079	197975079	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2929-03A-01W-0732-08	TCGA-AB-2929-11A-01W-0732-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	197975079	197975079	T	C	SNP	SF3B1	NM_012433	human	genbank	54_36p	-1	reviewed	missense	c.2098	p.K700E	1.000	superfamily_ARM repeat,HMMPfam_HEAT	HMMPfam_SF3b1,superfamily_ARM repeat,HMMPfam_HEAT	-	no_errors
INADL	10207	genome.wustl.edu	36	1	62122600	62122600	+	Silent	SNP	G	G	A	rs77900764		TCGA-AB-2929-03A-01W-0732-08	TCGA-AB-2929-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	62122600	62122600	G	A	SNP	INADL	NM_176877	human	genbank	54_36p	+1	reviewed	silent	c.3063	p.A1021	0.000	NULL	HMMPfam_L27_2,HMMSmart_SM00569,superfamily_L27 domain,superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228	-	no_errors
PCDHGA10	56106	genome.wustl.edu	36	5	140773949	140773951	+	In_Frame_Del	DEL	AGA	AGA	-			TCGA-AB-2929-03A-01W-0732-08	TCGA-AB-2929-11A-01W-0732-08	AGA	AGA			AGA	AGA	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	140773949	140773951	AGA	-	DEL	PCDHGA10	NM_018913	human	genbank	54_36p	+1	reviewed	in_frame_del	c.1023_1025	p.E342in_frame_del	0.002:0.003:0.175	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1	superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors
SYPL2	284612	genome.wustl.edu	36	1	109821023	109821023	+	Silent	SNP	G	G	A			TCGA-AB-2929-03A-01W-0732-08	TCGA-AB-2929-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	109821023	109821023	G	A	SNP	SYPL2	NM_001040709	human	genbank	54_36p	+1	validated	silent	c.357	p.V119	1.000	HMMPfam_MARVEL	HMMPfam_MARVEL	-	no_errors
RINL	126432	genome.wustl.edu	36	19	44052437	44052437	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2929-03A-01W-0732-08	TCGA-AB-2929-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	44052437	44052437	C	T	SNP	RINL	NM_198445	human	genbank	54_36p	-1	provisional	missense	c.986	p.R329Q	0.000	superfamily_SSF109993,HMMPfam_VPS9	superfamily_SSF109993,HMMPfam_VPS9	-	no_errors
