Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
PIK3R2	5296	genome.wustl.edu	36	19	18140694	18140694	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2936-03A-01W-0745-08	TCGA-AB-2936-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	18140694	18140694	C	A	SNP	PIK3R2	NM_005027	human	genbank	54_36p	+1	validated	missense	c.1967	p.A656D	1.000	superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2	superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP,superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2	-	no_errors
LOC100133293	100133293	genome.wustl.edu	36	X	9333461	9333461	+	RNA	SNP	C	C	T			TCGA-AB-2936-03A-01W-0745-08	TCGA-AB-2936-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	9333461	9333461	C	T	SNP	LOC100133293	XR_037392	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.434	-	-	-	pseudogene
LOC100130511	100130511	genome.wustl.edu	36	1	178670527	178670527	+	RNA	SNP	C	C	T			TCGA-AB-2936-03A-01W-0745-08	TCGA-AB-2936-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	178670527	178670527	C	T	SNP	LOC100130511	XR_038100	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.222	-	-	-	pseudogene
C7orf10	79783	genome.wustl.edu	36	7	40201173	40201173	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2936-03A-01W-0745-08	TCGA-AB-2936-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	40201173	40201173	G	T	SNP	C7orf10	NM_024728	human	genbank	54_36p	+1	predicted	missense	c.383	p.C128F	1.000	superfamily_CoA-Trfase_fam_III,HMMPfam_CoA_transf_3	superfamily_CoA-Trfase_fam_III,HMMPfam_CoA_transf_3	-	no_errors
CAMK4	814	genome.wustl.edu	36	5	110738461	110738461	+	Silent	SNP	C	C	T			TCGA-AB-2936-03A-01W-0745-08	TCGA-AB-2936-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	110738461	110738461	C	T	SNP	CAMK4	NM_001744	human	genbank	54_36p	+1	reviewed	silent	c.255	p.I85	0.982	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
COL5A3	50509	genome.wustl.edu	36	19	9949363	9949363	+	Silent	SNP	C	C	T			TCGA-AB-2936-03A-01W-0745-08	TCGA-AB-2936-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	9949363	9949363	C	T	SNP	COL5A3	NM_015719	human	genbank	54_36p	-1	reviewed	silent	c.3033	p.E1011	1.000	NULL	HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2,HMMPfam_Collagen,HMMSmart_SM00038,HMMPfam_COLFI	-	no_errors
IDH2	3418	genome.wustl.edu	36	15	88432938	88432938	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2936-03A-01W-0745-08	TCGA-AB-2936-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	88432938	88432938	C	T	SNP	IDH2	NM_002168	human	genbank	54_36p	-1	reviewed	missense	c.419	p.R140Q	1.000	HMMPfam_Iso_dh,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like	HMMPfam_Iso_dh,PatternScan_IDH_IMDH,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like	-	no_errors
HAS3	3038	genome.wustl.edu	36	16	67705878	67705878	+	Silent	SNP	C	C	T			TCGA-AB-2936-03A-01W-0745-08	TCGA-AB-2936-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	67705878	67705878	C	T	SNP	HAS3	NM_005329	human	genbank	54_36p	+1	reviewed	silent	c.870	p.Y290	1.000	superfamily_SSF53448	superfamily_SSF53448,HMMPfam_Glycos_transf_2	-	no_errors
WDR64	128025	genome.wustl.edu	36	1	239979605	239979605	+	Silent	SNP	G	G	C			TCGA-AB-2936-03A-01W-0745-08	TCGA-AB-2936-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	239979605	239979605	G	C	SNP	WDR64	NM_144625	human	genbank	54_36p	+1	validated	silent	c.858	p.L286	0.030	superfamily_WD40 repeat-like	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40	-	no_errors
NXF2B	728343	genome.wustl.edu	36	X	101511581	101511581	+	Silent	SNP	G	G	A			TCGA-AB-2936-03A-01W-0745-08	TCGA-AB-2936-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	101511581	101511581	G	A	SNP	NXF2B	NM_001099686	human	genbank	54_36p	-1	inferred	silent	c.192	p.S64	0.000	NULL	superfamily_SSF54928,HMMPfam_Tap-RNA_bind,superfamily_SSF52058,superfamily_SSF54427,HMMPfam_NTF2,superfamily_UBA_like,HMMSmart_TAP_C,HMMPfam_TAP_C	-	no_errors
U2AF2	11338	genome.wustl.edu	36	19	60872272	60872272	+	Silent	SNP	G	G	A			TCGA-AB-2936-03A-01W-0745-08	TCGA-AB-2936-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	60872272	60872272	G	A	SNP	U2AF2	NM_007279	human	genbank	54_36p	+1	reviewed	silent	c.957	p.G319	0.998	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD	-	no_errors
ACTL9	284382	genome.wustl.edu	36	19	8669551	8669551	+	Silent	SNP	G	G	A			TCGA-AB-2936-03A-01W-0745-08	TCGA-AB-2936-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	8669551	8669551	G	A	SNP	MGC33407	NM_178525	human	genbank	54_36p	-1	validated	silent	c.501	p.F167	1.000	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain	PatternScan_N6_MTASE,HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain	-	no_errors
SCAP	22937	genome.wustl.edu	36	3	47442538	47442538	+	Missense_Mutation	SNP	A	A	T			TCGA-AB-2936-03A-01W-0745-08	TCGA-AB-2936-11A-01W-0745-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	47442538	47442538	A	T	SNP	SCAP	NM_012235	human	genbank	54_36p	-1	reviewed	missense	c.863	p.L288H	1.000	superfamily_Multidrug efflux transporter AcrB transmembrane domain	superfamily_Multidrug efflux transporter AcrB transmembrane domain,HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors
NRF1	4899	genome.wustl.edu	36	7	129136160	129136160	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2936-03A-01W-0745-08	TCGA-AB-2936-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	129136160	129136160	C	T	SNP	NRF1	NM_001040110	human	genbank	54_36p	+1	reviewed	missense	c.616	p.R206W	1.000	HMMPfam_Nrf1_DNA-bind	HMMPfam_Nrf1_DNA-bind,HMMPfam_Nrf1_activ_bdg	-	no_errors
TCEAL6	158931	genome.wustl.edu	36	X	101282737	101282737	+	Nonsense_Mutation	SNP	C	C	A			TCGA-AB-2936-03A-01W-0745-08	TCGA-AB-2936-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	101282737	101282737	C	A	SNP	TCEAL6	NM_001006938	human	genbank	54_36p	-1	validated	nonsense	c.223	p.E75*	0.009	HMMPfam_TFA	HMMPfam_TFA	-	no_errors
RUNX1	861	genome.wustl.edu	36	21	35093477	35093477	+	Nonsense_Mutation	SNP	G	G	A			TCGA-AB-2936-03A-01W-0745-08	TCGA-AB-2936-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	21	35093477	35093477	G	A	SNP	RUNX1	NM_001754	human	genbank	54_36p	-1	reviewed	nonsense	c.958	p.R320*	1.000	NULL	HMMPfam_Runt,superfamily_p53-like transcription factors,HMMPfam_RunxI	-	no_errors
MT-CO3	0	genome.wustl.edu	36	MT	9554	9554	+	Nonsense_Mutation	SNP	G	G	A			TCGA-AB-2936-03A-01W-0745-08	TCGA-AB-2936-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	MT	9554	9554	G	A	SNP	MT-CO3	ENST00000362079	human	ensembl	54_36p	+1	known	nonsense	c.347	p.W116*	NULL	superfamily_CytC_oxdse_III,HMMPfam_COX3	superfamily_CytC_oxdse_III,HMMPfam_COX3	-	no_stop_codon:bad_bp_length_for_coding_region
CPAMD8	27151	genome.wustl.edu	36	19	16952465	16952465	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2936-03A-01W-0745-08	TCGA-AB-2936-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	16952465	16952465	G	T	SNP	CPAMD8	NM_015692	human	genbank	54_36p	-1	validated	missense	c.1568	p.S523Y	1.000	HMMPfam_A2M_N_2	HMMPfam_A2M,HMMPfam_Kazal_1,HMMSmart_SM00280,HMMPfam_A2M_N,superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_A2M_recep,superfamily_Alpha-macroglobulin receptor domain,HMMPfam_A2M_N_2,HMMPfam_A2M_comp,HMMPfam_Thiol-ester_cl,PatternScan_ALPHA_2_MACROGLOBULIN,superfamily_Kazal-type serine protease inhibitors	-	no_errors
