Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
NAALADL2	254827	genome.wustl.edu	36	3	176647790	176647790	+	Silent	SNP	G	G	A			TCGA-AB-2950-03A-01W-0733-08	TCGA-AB-2950-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	176647790	176647790	G	A	SNP	NAALADL2	NM_207015	human	genbank	54_36p	+1	validated	silent	c.1170	p.L390	0.953	superfamily_Transferrin receptor ectodomain apical domain,superfamily_Zn-dependent exopeptidases	superfamily_Transferrin receptor ectodomain apical domain,superfamily_Zn-dependent exopeptidases,PatternScan_GLYCOSYL_HYDROL_F5,superfamily_Transferrin receptor ectodomain C-terminal domain	-	no_errors
MGA	23269	genome.wustl.edu	36	15	39833933	39833934	+	Frame_Shift_Del	DEL	TG	TG	-			TCGA-AB-2950-03A-01W-0733-08	TCGA-AB-2950-11A-01W-0732-08	TG	TG			TG	TG	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	39833933	39833934	TG	-	DEL	MGA	NM_001080541	human	genbank	54_36p	+1	provisional	frame_shift_del	c.7162_7163	p.V2389fs	0.094:0.101	NULL	superfamily_p53-like transcription factors,HMMSmart_SM00425,HMMPfam_T-box,PatternScan_TBOX_2,HMMPfam_HLH,superfamily_HLH helix-loop-helix DNA-binding domain,HMMSmart_SM00353	-	no_errors
B3GALT5	10317	genome.wustl.edu	36	21	39955062	39955062	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2950-03A-01W-0733-08	TCGA-AB-2950-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	21	39955062	39955062	G	A	SNP	B3GALT5	NM_006057	human	genbank	54_36p	+1	reviewed	missense	c.706	p.V236I	0.292	HMMPfam_Galactosyl_T	HMMPfam_Galactosyl_T	-	no_errors
EHD1	10938	genome.wustl.edu	36	11	64384284	64384284	+	Silent	SNP	C	C	T			TCGA-AB-2950-03A-01W-0733-08	TCGA-AB-2950-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	64384284	64384284	C	T	SNP	EHD1	NM_006795	human	genbank	54_36p	-1	reviewed	silent	c.603	p.S201	0.208	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Dynamin_N	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Dynamin_N,superfamily_EF-hand,HMMSmart_SM00027,PatternScan_EF_HAND_1	-	no_errors
KIAA1109	84162	genome.wustl.edu	36	4	123422329	123422329	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2950-03A-01W-0733-08	TCGA-AB-2950-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	123422329	123422329	C	G	SNP	KIAA1109	NM_015312	human	genbank	54_36p	+1	validated	missense	c.8987	p.S2996C	1.000	NULL	PatternScan_ASP_PROTEASE,HMMPfam_FSA_C	-	no_errors
LHCGR	3973	genome.wustl.edu	36	2	48789650	48789650	+	Silent	SNP	G	G	A			TCGA-AB-2950-03A-01W-0733-08	TCGA-AB-2950-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	48789650	48789650	G	A	SNP	LHCGR	NM_000233	human	genbank	54_36p	-1	reviewed	silent	c.621	p.N207	0.019	superfamily_L domain-like	superfamily_L domain-like,superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
ACOXL	55289	genome.wustl.edu	36	2	111258841	111258841	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2950-03A-01W-0733-08	TCGA-AB-2950-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	111258841	111258841	C	T	SNP	ACOXL	NM_001105516	human	genbank	54_36p	+1	validated	missense	c.137	p.A46V	0.187	superfamily_Acyl-CoA dehydrogenase NM domain-like	superfamily_Acyl-CoA dehydrogenase NM domain-like,HMMPfam_Acyl-CoA_dh_M,HMMPfam_Acyl-CoA_dh_1,superfamily_Acyl-CoA dehydrogenase C-terminal domain-like	-	no_errors
ARHGAP35	2909	genome.wustl.edu	36	19	52114941	52114941	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2950-03A-01W-0733-08	TCGA-AB-2950-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	52114941	52114941	C	T	SNP	GRLF1	NM_004491	human	genbank	54_36p	+1	reviewed	missense	c.1169	p.A390V	0.998	HMMSmart_SM00441	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Ras,HMMSmart_SM00441,HMMPfam_FF,superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP	-	no_errors
GRID1	2894	genome.wustl.edu	36	10	87397062	87397062	+	Nonsense_Mutation	SNP	G	G	T			TCGA-AB-2950-03A-01W-0733-08	TCGA-AB-2950-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	87397062	87397062	G	T	SNP	GRID1	NM_017551	human	genbank	54_36p	-1	reviewed	nonsense	c.2070	p.Y690*	1.000	HMMPfam_Lig_chan,HMMSmart_SM00079,superfamily_Periplasmic binding protein-like II	HMMPfam_Lig_chan,HMMSmart_SM00079,HMMPfam_ANF_receptor,PatternScan_ALDEHYDE_DEHYDR_GLU,HMMPfam_Lig_chan-Glu_bd,superfamily_Periplasmic binding protein-like I,superfamily_Periplasmic binding protein-like II	-	no_errors
DKFZP779L1853	643162	genome.wustl.edu	36	12	46881516	46881516	+	RNA	SNP	G	G	A			TCGA-AB-2950-03A-01W-0733-08	TCGA-AB-2950-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	46881516	46881516	G	A	SNP	DKFZP779L1853	XR_041777	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.015	-	-	-	no_errors
COPS2	9318	genome.wustl.edu	36	15	47235040	47235040	+	Missense_Mutation	SNP	A	A	C			TCGA-AB-2950-03A-01W-0733-08	TCGA-AB-2950-11A-01W-0732-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	47235040	47235040	A	C	SNP	COPS2	NM_004236	human	genbank	54_36p	-1	validated	missense	c.28	p.C10G	1.000	NULL	"superfamily_TPR-like,HMMSmart_SM00753,HMMPfam_PCI,superfamily_""Winged helix"" DNA-binding domain,HMMSmart_SM00088"	-	no_errors
POTEF	728378	genome.wustl.edu	36	2	130594532	130594532	+	Silent	SNP	C	C	T			TCGA-AB-2950-03A-01W-0733-08	TCGA-AB-2950-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	130594532	130594532	C	T	SNP	POTEF	NM_001099771	human	genbank	54_36p	-1	validated	silent	c.27	p.P9	0.000	NULL	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK,HMMPfam_Actin,HMMSmart_ACTIN,PatternScan_ACTINS_ACT_LIKE,PatternScan_ACTINS_2,superfamily_SSF53067	-	no_errors
SCN5A	6331	genome.wustl.edu	36	3	38597588	38597588	+	Silent	SNP	G	G	A			TCGA-AB-2950-03A-01W-0733-08	TCGA-AB-2950-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	38597588	38597588	G	A	SNP	SCN5A	NM_001099404	human	genbank	54_36p	-1	reviewed	silent	c.3066	p.T1022	0.933	HMMPfam_Na_trans_assoc	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,HMMPfam_IQ	-	no_errors
SMC3	9126	genome.wustl.edu	36	10	112350880	112350880	+	Splice_Site	SNP	T	T	C			TCGA-AB-2950-03A-01W-0733-08	TCGA-AB-2950-11A-01W-0732-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	112350880	112350880	T	C	SNP	SMC3	NM_005445	human	genbank	54_36p	+1	reviewed	splice_site	c.2644+2	e23+2	0.991	-	-	-	no_errors
FCGBP	8857	genome.wustl.edu	36	19	45100137	45100137	+	Silent	SNP	C	C	T			TCGA-AB-2950-03A-01W-0733-08	TCGA-AB-2950-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	45100137	45100137	C	T	SNP	FCGBP	NM_003890	human	genbank	54_36p	-1	validated	silent	c.4542	p.A1514	0.937	HMMPfam_C8	HMMSmart_VWC,HMMPfam_VWD,HMMSmart_VWD,superfamily_Cysrich_TIL,HMMPfam_TIL_assoc,HMMSmart_FOLN,HMMPfam_C8,HMMPfam_TIL	-	no_errors
ARHGEF6	9459	genome.wustl.edu	36	X	135600449	135600449	+	Frame_Shift_Del	DEL	C	C	-			TCGA-AB-2950-03A-01W-0733-08	TCGA-AB-2950-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	135600449	135600449	C	-	DEL	ARHGEF6	NM_004840	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.1171	p.E391fs	1.000	superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,HMMSmart_SM00033,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233	-	no_errors
