Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
LOC100129743	100129743	genome.wustl.edu	36	2	203613328	203613332	+	Frame_Shift_Del	DEL	CATGC	CATGC	-			TCGA-AB-2963-03A-01D-0739-09	TCGA-AB-2963-11A-01D-0739-09	CATGC	CATGC			CATGC	CATGC	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	2	203613328	203613332	CATGC	-	DEL	LOC100129743	XM_001724736	human	genbank	54_36p	+1	model	frame_shift_del	c.253_257	p.A86fs	0.952:0.949:0.939:0.920:0.925	NULL	HMMPfam_Ribosomal_L30,superfamily_Ribosomal protein L30p/L7e,PatternScan_RIBOSOMAL_L30	-	pseudogene
BECN1	8678	genome.wustl.edu	36	17	38223906	38223906	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2963-03A-01D-0739-09	TCGA-AB-2963-11A-01D-0739-09	T	T			T	T	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	17	38223906	38223906	T	C	SNP	BECN1	NM_003766	human	genbank	54_36p	-1	validated	missense	c.542	p.Q181R	0.968	HMMPfam_APG6	HMMPfam_APG6	-	no_errors
UNC5B	219699	genome.wustl.edu	36	10	72723681	72723681	+	Silent	SNP	G	G	A			TCGA-AB-2963-03A-01D-0739-09	TCGA-AB-2963-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	10	72723681	72723681	G	A	SNP	UNC5B	NM_170744	human	genbank	54_36p	+1	validated	silent	c.2160	p.T720	0.564	NULL	HMMPfam_Death,HMMSmart_SM00005,HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMPfam_ZU5,HMMSmart_SM00218,HMMSmart_SM00408,HMMSmart_SM00409,superfamily_DEATH domain,HMMPfam_I-set,superfamily_Immunoglobulin	-	no_errors
SMC1A	8243	genome.wustl.edu	36	X	53443342	53443342	+	Missense_Mutation	SNP	A	A	T			TCGA-AB-2963-03A-01D-0739-09	TCGA-AB-2963-11A-01D-0739-09	A	A			A	A	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	X	53443342	53443342	A	T	SNP	SMC1A	NM_006306	human	genbank	54_36p	-1	reviewed	missense	c.2456	p.I819N	1.000	HMMPfam_SMC_N,superfamily_SSF52540	HMMPfam_SMC_N,HMMPfam_SMC_hinge,superfamily_SMC_hinge,superfamily_SSF52540	-	no_errors
NPM1	4869	genome.wustl.edu	36	5	170770152	170770153	+	Frame_Shift_Ins	INS	-	-	CCTG			TCGA-AB-2963-03A-01D-0739-09	TCGA-AB-2963-11A-01D-0739-09	-	-			-	-	Verified	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	5	170770152	170770153	0	CCTG	INS	NPM1	NM_002520	human	genbank	54_36p	1	validated	frame_shift_ins	c.863_864	p.W288fs	1.000:1.000	NULL	Nucleoplasmin;HMMPfam_Nucleoplasmin;Nucleoplasmin-like	-	NA
ETF1	2107	genome.wustl.edu	36	5	137881160	137881160	+	Missense_Mutation	SNP	A	A	C			TCGA-AB-2963-03A-01D-0739-09	TCGA-AB-2963-11A-01D-0739-09	A	A			A	A	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	5	137881160	137881160	A	C	SNP	ETF1	NM_004730	human	genbank	54_36p	-1	validated	missense	c.391	p.F131V	1.000	superfamily_N-terminal domain of eukaryotic peptide chain release factor subunit 1 ERF1,HMMPfam_eRF1_1	superfamily_N-terminal domain of eukaryotic peptide chain release factor subunit 1 ERF1,HMMPfam_eRF1_1,superfamily_Translational machinery components,HMMPfam_eRF1_2,superfamily_L30e-like,HMMPfam_eRF1_3	-	no_errors
ZFHX3	463	genome.wustl.edu	36	16	71378635	71378635	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2963-03A-01D-0739-09	TCGA-AB-2963-11A-01D-0739-09	C	C			C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	16	71378635	71378635	C	T	SNP	ZFHX3	NM_006885	human	genbank	54_36p	-1	validated	missense	c.11041	p.G3681S	1.000	NULL	superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2,HMMSmart_SM00451,HMMSmart_SM00389,superfamily_Homeodomain-like,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	-	no_errors
BMS1	9790	genome.wustl.edu	36	10	42609323	42609323	+	Silent	SNP	C	C	A			TCGA-AB-2963-03A-01D-0739-09	TCGA-AB-2963-11A-01D-0739-09	C	C			C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	10	42609323	42609323	C	A	SNP	BMS1	NM_014753	human	genbank	54_36p	+1	reviewed	silent	c.1107	p.T369	0.980	superfamily_P-loop containing nucleoside triphosphate hydrolases	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_AARP2CN,HMMSmart_SM00785,HMMPfam_DUF663	-	no_errors
STC2	8614	genome.wustl.edu	36	5	172677693	172677693	+	Silent	SNP	C	C	T			TCGA-AB-2963-03A-01D-0739-09	TCGA-AB-2963-11A-01D-0739-09	C	C			C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	5	172677693	172677693	C	T	SNP	STC2	NM_003714	human	genbank	54_36p	-1	reviewed	silent	c.672	p.E224	0.052	HMMPfam_Stanniocalcin	HMMPfam_Stanniocalcin	-	no_errors
KIAA1239	57495	genome.wustl.edu	36	4	37123097	37123097	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2963-03A-01D-0739-09	TCGA-AB-2963-11A-01D-0739-09	A	A			A	A	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	4	37123097	37123097	A	G	SNP	KIAA1239	ENST00000309447	human	ensembl	54_36p	+1	known	missense	c.1358	p.N453S	1.000	superfamily_WD40 repeat-like,HMMSmart_SM00320	HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1	-	no_start_codon
FAM69A	388650	genome.wustl.edu	36	1	93082134	93082134	+	Silent	SNP	C	C	T			TCGA-AB-2963-03A-01D-0739-09	TCGA-AB-2963-11A-01D-0739-09	C	C			C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	1	93082134	93082134	C	T	SNP	FAM69A	ENST00000370310	human	ensembl	54_36p	-1	known	silent	c.681	p.V227	1.000	NULL	NULL	-	no_errors
EPHA8	2046	genome.wustl.edu	36	1	22788115	22788115	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2963-03A-01D-0739-09	TCGA-AB-2963-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	1	22788115	22788115	G	A	SNP	EPHA8	NM_020526	human	genbank	54_36p	+1	reviewed	missense	c.1144	p.G382S	0.859	superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3	superfamily_Gal_bind_like,HMMPfam_Ephrin_lbd,HMMSmart_EPH_lbd,PatternScan_RECEPTOR_TYR_KIN_V_1,PatternScan_RECEPTOR_TYR_KIN_V_2,PatternScan_EGF_2,superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR,superfamily_SAM_homology,HMMSmart_SAM,HMMPfam_SAM_1	-	no_errors
NLRP8	126205	genome.wustl.edu	36	19	61158758	61158758	+	Missense_Mutation	SNP	G	G	C			TCGA-AB-2963-03A-01D-0739-09	TCGA-AB-2963-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	19	61158758	61158758	G	C	SNP	NLRP8	NM_176811	human	genbank	54_36p	+1	provisional	missense	c.1522	p.V508L	0.003	NULL	superfamily_DEATH domain,HMMPfam_PAAD_DAPIN,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_NACHT,superfamily_RNI-like,HMMSmart_SM00368	-	no_errors
RFC1	5981	genome.wustl.edu	36	4	38984633	38984633	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2963-03A-01D-0739-09	TCGA-AB-2963-11A-01D-0739-09	T	T			T	T	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	4	38984633	38984633	T	C	SNP	RFC1	NM_002913	human	genbank	54_36p	-1	reviewed	missense	c.1969	p.T657A	1.000	superfamily_SSF52540,HMMSmart_AAA,HMMPfam_AAA	superfamily_BRCT,HMMPfam_BRCT,HMMSmart_BRCT,superfamily_SSF52540,HMMSmart_AAA,HMMPfam_AAA,superfamily_Pol_clamp_load_C,HMMPfam_RFC1	-	no_errors
RAB17	64284	genome.wustl.edu	36	2	238150673	238150673	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2963-03A-01D-0739-09	TCGA-AB-2963-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	2	238150673	238150673	G	A	SNP	RAB17	NM_022449	human	genbank	54_36p	-1	provisional	missense	c.401	p.T134M	0.991	superfamily_SSF52540,HMMSmart_RAB,HMMPfam_Ras	superfamily_SSF52540,HMMSmart_RAB,HMMPfam_Ras	-	no_errors
FLT3	2322	genome.wustl.edu	36	13	27490642	27490642	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2963-03A-01D-0739-09	TCGA-AB-2963-11A-01D-0739-09	C	C			C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	13	27490642	27490642	C	A	SNP	FLT3	NM_004119	human	genbank	54_36p	-1	reviewed	missense	c.2503	p.D835Y	1.000	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_RECEPTOR_TYR_KIN_III,PatternScan_PROTEIN_KINASE_TYR,superfamily_Kinase_like,HMMPfam_ig,PatternScan_PROTEIN_KINASE_ATP,superfamily_SSF48726	-	no_errors
TCTE3	6991	genome.wustl.edu	36	6	169885156	169885156	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2963-03A-01D-0739-09	TCGA-AB-2963-11A-01D-0739-09	C	C			C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	6	169885156	169885156	C	T	SNP	TCTE3	NM_174910	human	genbank	54_36p	-1	provisional	missense	c.431	p.R144H	0.993	HMMPfam_Tctex-1	HMMPfam_Tctex-1	-	no_errors
DAOA	267012	genome.wustl.edu	36	13	104940386	104940386	+	Frame_Shift_Del	DEL	C	C	-			TCGA-AB-2963-03A-01D-0739-09	TCGA-AB-2963-11A-01D-0739-09	C	C			C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	13	104940386	104940386	C	-	DEL	DAOA	NM_172370	human	genbank	54_36p	+1	reviewed	frame_shift_del	c.417	p.Q140fs	0.000	NULL	NULL	-	no_errors
EGFL8	80864	genome.wustl.edu	36	6	32243129	32243129	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2963-03A-01D-0739-09	TCGA-AB-2963-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	6	32243129	32243129	G	A	SNP	EGFL8	NM_030652	human	genbank	54_36p	+1	validated	missense	c.626	p.R209H	0.574	NULL	HMMPfam_EMI,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_2,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_SM00179,PatternScan_ASX_HYDROXYL	-	no_errors
