Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
BCLAF1	9774	genome.wustl.edu	36	6	136639071	136639071	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2970-03A-01D-0739-09	TCGA-AB-2970-11A-01D-0739-09					G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	6	136639071	136639071	G	A	SNP	BCLAF1	NM_014739.1	human	genbank	54_36p	-1	reviewed	missense	c.1285	p.R429W	1.000	NULL	NULL	-	no_errors
SNORD13	692084	genome.wustl.edu	36	3	47267043	47267043	+	RNA	SNP	G	G	A			TCGA-AB-2970-03A-01D-0739-09	TCGA-AB-2970-11A-01D-0739-09					G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	3	47267043	47267043	G	A	SNP	SNORD13	ENST00000387814	human	ensembl	54_36p	-1	known	rna	NULL	NULL	0.210	-	-	-	pseudogene
RUNX1	861	genome.wustl.edu	36	21	35181023	35181023	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2970-03A-01D-0739-09	TCGA-AB-2970-11A-01D-0739-09					G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	21	35181023	35181023	G	A	SNP	RUNX1	NM_001754.2	human	genbank	54_36p	-1	reviewed	missense	c.338	p.P113L	1.000	HMMPfam_Runt,superfamily_p53-like transcription factors	HMMPfam_Runt,superfamily_p53-like transcription factors,HMMPfam_RunxI	-	no_errors
BCOR	54880	genome.wustl.edu	36	X	39818802	39818802	+	Frame_Shift_Del	DEL	C	C	-			TCGA-AB-2970-03A-01D-0739-09	TCGA-AB-2970-11A-01D-0739-09					C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	X	39818802	39818802	C	-	DEL	BCOR	NM_017745.1	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.741	p.P248fs	1.000	NULL	superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank	-	no_errors
MSR1	4481	genome.wustl.edu	36	8	16022443	16022443	+	Silent	SNP	G	G	A			TCGA-AB-2970-03A-01D-0739-09	TCGA-AB-2970-11A-01D-0739-09					G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	8	16022443	16022443	G	A	SNP	MSR1	NM_138715.3	human	genbank	54_36p	-1	reviewed	silent	c.1077	p.H359	0.042	superfamily_SRCR-like,HMMSmart_SM00202,HMMPfam_SRCR,PatternScan_SRCR_1	HMMPfam_Macscav_rec,HMMPfam_Collagen,superfamily_SRCR-like,HMMSmart_SM00202,HMMPfam_SRCR,PatternScan_SRCR_1	-	no_errors
EMX2OS	196047	genome.wustl.edu	36	10	119239116	119239116	+	RNA	SNP	T	T	C			TCGA-AB-2970-03A-01D-0739-09	TCGA-AB-2970-11A-01D-0739-09					T	T	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	10	119239116	119239116	T	C	SNP	EMX2OS	NR_002791.2	human	genbank	54_36p	-1	provisional	rna	NULL	NULL	0.001	-	-	-	no_errors
SCUBE3	222663	genome.wustl.edu	36	6	35320457	35320457	+	Silent	SNP	C	C	T			TCGA-AB-2970-03A-01D-0739-09	TCGA-AB-2970-11A-01D-0739-09					C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	6	35320457	35320457	C	T	SNP	SCUBE3	NM_152753.2	human	genbank	54_36p	+1	provisional	silent	c.2292	p.R764	1.000	superfamily_Growth factor receptor domain,HMMSmart_SM00181,HMMPfam_GCC2_GCC3	PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_SM00179,HMMSmart_SM00181,superfamily_EGF/Laminin,PatternScan_ASX_HYDROXYL,PatternScan_EGF_2,HMMPfam_EGF,superfamily_Growth factor receptor domain,HMMPfam_GCC2_GCC3,superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042	-	no_errors
ENSG00000201010	0	genome.wustl.edu	36	2	48298360	48298360	+	RNA	SNP	A	A	G			TCGA-AB-2970-03A-01D-0739-09	TCGA-AB-2970-11A-01D-0739-09					A	A	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	2	48298360	48298360	A	G	SNP	ENSG00000201010	ENST00000364140	human	ensembl	54_36p	+1	novel	rna	NULL	NULL	1.000	-	-	-	no_errors
LRRN2	10446	genome.wustl.edu	36	1	202854975	202854975	+	Silent	SNP	G	G	A			TCGA-AB-2970-03A-01D-0739-09	TCGA-AB-2970-11A-01D-0739-09					G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	1	202854975	202854975	G	A	SNP	LRRN2	NM_006338.2	human	genbank	54_36p	-1	reviewed	silent	c.769	p.L257	0.995	superfamily_L domain-like,HMMSmart_SM00369,HMMSmart_SM00365	superfamily_L domain-like,HMMSmart_SM00365,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00082,HMMPfam_LRRCT,superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408	-	no_errors
WT1	7490	genome.wustl.edu	36	11	32370187	32370187	+	Splice_Site	SNP	C	C	T			TCGA-AB-2970-03A-01D-0739-09	TCGA-AB-2970-11A-01D-0739-09					C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	11	32370187	32370187	C	T	SNP	WT1	NM_024426.3	human	genbank	54_36p	-1	reviewed	splice_site	c.1340-1	e9-1	1.000	-	-	-	no_errors
FLT3	2322	genome.wustl.edu	36	13	27506258	27506259	+	In_Frame_Ins	INS	-	-	GGCGATATTCATATTCTCTGAAATCAACGTAGAAGTACTCATTATCTGAGGAGCCGG			TCGA-AB-2970-03A-01D-0739-09	TCGA-AB-2970-11A-01D-0739-09					-	-	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	13	27506258	27506259	-	GGCGATATTCATATTCTCTGAAATCAACGTAGAAGTACTCATTATCTGAGGAGCCGG	INS	FLT3	NM_004119.2	human	genbank	54_36p	-1	reviewed	in_frame_ins	c.1798_1797	p.599in_frame_insPAPQIMSTSTLISENMNIA	1.000:1.000	superfamily_Kinase_like	superfamily_SSF48726,HMMPfam_ig,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_RECEPTOR_TYR_KIN_III,PatternScan_PROTEIN_KINASE_TYR	-	no_errors
PLEKHH1	57475	genome.wustl.edu	36	14	67106471	67106471	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2970-03A-01D-0739-09	TCGA-AB-2970-11A-01D-0739-09					G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	14	67106471	67106471	G	A	SNP	PLEKHH1	NM_020715.2	human	genbank	54_36p	+1	validated	missense	c.1423	p.A475T	0.998	NULL	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,HMMSmart_SM00139,HMMPfam_MyTH4,HMMSmart_SM00295,superfamily_Second domain of FERM,HMMPfam_FERM_M	-	no_errors
