Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
FLT3	2322	genome.wustl.edu	36	13	27506256	27506257	+	In_Frame_Ins	INS	-	-	TCATATTCATATTCATATTCATAT			TCGA-AB-2976-03A-01D-0739-09	TCGA-AB-2976-11A-01D-0739-09					-	-	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	13	27506256	27506257	-	TCATATTCATATTCATATTCATAT	INS	FLT3	NM_004119.2	human	genbank	54_36p	-1	reviewed	in_frame_ins	c.1800_1799	p.600in_frame_insEYEYEYEY	0.998:1.000	superfamily_Kinase_like	superfamily_SSF48726,HMMPfam_ig,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_RECEPTOR_TYR_KIN_III,PatternScan_PROTEIN_KINASE_TYR	-	no_errors
MED14	9282	genome.wustl.edu	36	X	40416092	40416092	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2976-03A-01D-0739-09	TCGA-AB-2976-11A-01D-0739-09					T	T	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	X	40416092	40416092	T	C	SNP	MED14	NM_004229.3	human	genbank	54_36p	-1	reviewed	missense	c.3098	p.N1033S	0.797	NULL	HMMPfam_MED14	-	no_errors
GATAD2B	57459	genome.wustl.edu	36	1	152057953	152057953	+	Nonsense_Mutation	SNP	G	G	A			TCGA-AB-2976-03A-01D-0739-09	TCGA-AB-2976-11A-01D-0739-09					G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	1	152057953	152057953	G	A	SNP	GATAD2B	NM_020699.2	human	genbank	54_36p	-1	validated	nonsense	c.535	p.R179*	1.000	NULL	PatternScan_GATA_ZN_FINGER_1,superfamily_SSF57716,HMMPfam_GATA	-	no_errors
TNR	7143	genome.wustl.edu	36	1	173615438	173615438	+	Silent	SNP	G	G	A			TCGA-AB-2976-03A-01D-0739-09	TCGA-AB-2976-11A-01D-0739-09					G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	1	173615438	173615438	G	A	SNP	TNR	NM_003285.2	human	genbank	54_36p	-1	validated	silent	c.1836	p.L612	0.635	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III	PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_SM00181,HMMPfam_EGF_2,superfamily_EGF/Laminin,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMSmart_SM00186,HMMPfam_Fibrinogen_C,superfamily_Fibrinogen C-terminal domain-like	-	no_errors
BOC	91653	genome.wustl.edu	36	3	114482133	114482133	+	Silent	SNP	C	C	T			TCGA-AB-2976-03A-01D-0739-09	TCGA-AB-2976-11A-01D-0739-09					C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	3	114482133	114482133	C	T	SNP	BOC	NM_033254.2	human	genbank	54_36p	+1	validated	silent	c.2241	p.G747	0.996	superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,HMMPfam_V-set,HMMPfam_I-set,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,PatternScan_N6_MTASE,PatternScan_CYTOCHROME_P450	-	no_errors
LRRC37B	114659	genome.wustl.edu	36	17	27401222	27401223	+	Frame_Shift_Ins	INS	-	-	T			TCGA-AB-2976-03A-01D-0739-09	TCGA-AB-2976-11A-01D-0739-09					-	-	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	17	27401222	27401223	-	T	INS	LRRC37B	NM_052888.2	human	genbank	54_36p	+1	validated	frame_shift_ins	c.2764_2765	p.C924fs	0.201:0.224	NULL	superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1	-	no_errors
PRR13	54458	genome.wustl.edu	36	12	52126095	52126095	+	Silent	SNP	C	C	T			TCGA-AB-2976-03A-01D-0739-09	TCGA-AB-2976-11A-01D-0739-09					C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	12	52126095	52126095	C	T	SNP	PRR13	NM_018457.2	human	genbank	54_36p	+1	validated	silent	c.432	p.S144	1.000	NULL	NULL	-	no_errors
WT1	7490	genome.wustl.edu	36	11	32374485	32374486	+	Frame_Shift_Ins	INS	-	-	GACCG			TCGA-AB-2976-03A-01D-0739-09	TCGA-AB-2976-11A-01D-0739-09					-	-	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	11	32374485	32374486	-	GACCG	INS	WT1	NM_024426.3	human	genbank	54_36p	-1	reviewed	frame_shift_ins	c.1143_1142	p.A382fs	0.771:0.996	HMMPfam_WT1	HMMPfam_WT1,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
SEMA7A	8482	genome.wustl.edu	36	15	72494038	72494038	+	Silent	SNP	C	C	T			TCGA-AB-2976-03A-01D-0739-09	TCGA-AB-2976-11A-01D-0739-09					C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	15	72494038	72494038	C	T	SNP	SEMA7A	NM_003612.1	human	genbank	54_36p	-1	reviewed	silent	c.1197	p.T399	0.001	superfamily_Sema,HMMPfam_Sema,HMMSmart_Sema	superfamily_Sema,HMMPfam_Sema,HMMSmart_Sema,HMMPfam_PSI,HMMSmart_PSI,superfamily_Plexin-like_fold,superfamily_SSF48726,HMMSmart_IG	-	no_errors
DDHD1	80821	genome.wustl.edu	36	14	52599500	52599500	+	Silent	SNP	C	C	T			TCGA-AB-2976-03A-01D-0739-09	TCGA-AB-2976-11A-01D-0739-09					C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	14	52599500	52599500	C	T	SNP	DDHD1	NM_030637.1	human	genbank	54_36p	-1	provisional	silent	c.1677	p.L559	1.000	NULL	HMMPfam_DDHD	-	no_errors
SRCRB4D	136853	genome.wustl.edu	36	7	75860727	75860727	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2976-03A-01D-0739-09	TCGA-AB-2976-11A-01D-0739-09					C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	7	75860727	75860727	C	T	SNP	SRCRB4D	NM_080744.1	human	genbank	54_36p	-1	provisional	missense	c.1264	p.D422N	1.000	superfamily_SRCR-like,HMMSmart_SM00202,HMMPfam_SRCR	superfamily_SRCR-like,HMMSmart_SM00202,HMMPfam_SRCR,PatternScan_SRCR_1	-	no_errors
SKOR1	390598	genome.wustl.edu	36	15	65905590	65905590	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2976-03A-01D-0739-09	TCGA-AB-2976-11A-01D-0739-09					G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	15	65905590	65905590	G	T	SNP	LBXCOR1	NM_001031807.1	human	genbank	54_36p	+1	provisional	missense	c.343	p.G115C	1.000	HMMPfam_Ski_Sno,superfamily_Putativ_DNA_bind	HMMPfam_Ski_Sno,superfamily_Putativ_DNA_bind,superfamily_SAND_like,HMMPfam_c-SKI_SMAD_bind	-	no_errors
PHF6	84295	genome.wustl.edu	36	X	133375658	133375658	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2976-03A-01D-0739-09	TCGA-AB-2976-11A-01D-0739-09					G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	X	133375658	133375658	G	A	SNP	PHF6	NM_001015877.1	human	genbank	54_36p	+1	reviewed	missense	c.725	p.C242Y	1.000	NULL	HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger	-	no_errors
DAGLB	221955	genome.wustl.edu	36	7	6427925	6427925	+	Silent	SNP	C	C	T			TCGA-AB-2976-03A-01D-0739-09	TCGA-AB-2976-11A-01D-0739-09					C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	7	6427925	6427925	C	T	SNP	DAGLB	NM_139179.1	human	genbank	54_36p	-1	validated	silent	c.1176	p.V392	0.092	superfamily_alpha/beta-Hydrolases,HMMPfam_Lipase_3	superfamily_alpha/beta-Hydrolases,HMMPfam_Lipase_3	-	no_errors
OR4C15	81309	genome.wustl.edu	36	11	55079244	55079244	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2976-03A-01D-0739-09	TCGA-AB-2976-11A-01D-0739-09	C	C			C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	11	55079244	55079244	C	T	SNP	OR4C15	NM_001001920	human	genbank	54_36p	+1	provisional	missense	c.886	p.H296Y	0.975	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,PatternScan_LECTIN_LEGUME_ALPHA,superfamily_Family A G protein-coupled receptor-like	-	no_errors
MYOC	4653	genome.wustl.edu	36	1	169888177	169888177	+	Silent	SNP	C	C	T			TCGA-AB-2976-03A-01D-0739-09	TCGA-AB-2976-11A-01D-0739-09					C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	1	169888177	169888177	C	T	SNP	MYOC	NM_000261.1	human	genbank	54_36p	-1	reviewed	silent	c.198	p.Q66	0.450	NULL	HMMPfam_OLF,HMMSmart_SM00284	-	no_errors
FAM5C	339479	genome.wustl.edu	36	1	188517385	188517385	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-2976-03A-01D-0739-09	TCGA-AB-2976-11A-01D-0739-09					T	T	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	1	188517385	188517385	T	A	SNP	FAM5C	NM_199051.1	human	genbank	54_36p	-1	provisional	missense	c.355	p.T119S	1.000	HMMPfam_MACPF,HMMSmart_SM00457	HMMPfam_MACPF,HMMSmart_SM00457	-	no_errors
NPM1	4869	genome.wustl.edu	36	5	170770152	170770153	+	Frame_Shift_Ins	INS	-	-	CATG			TCGA-AB-2976-03A-01D-0739-09	TCGA-AB-2976-11A-01D-0739-09	-	-			-	-	Verified	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	5	170770152	170770153	0	CATG	INS	NPM1	NM_002520	human	genbank	54_36p	1	validated	frame_shift_ins	c.863_864	p.W288fs	1.000:1.000	NULL	Nucleoplasmin;HMMPfam_Nucleoplasmin;Nucleoplasmin-like	-	NA
LOC100133655	100133655	genome.wustl.edu	36	9	23949362	23949362	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2976-03A-01D-0739-09	TCGA-AB-2976-11A-01D-0739-09					G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	9	23949362	23949362	G	A	SNP	LOC100133655	XM_001716507.1	human	genbank	54_36p	+1	model	missense	c.1672	p.A558T	0.000	NULL	NULL	-	no_start_codon:pseudogene
TEK	7010	genome.wustl.edu	36	9	27203572	27203572	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2976-03A-01D-0739-09	TCGA-AB-2976-11A-01D-0739-09					G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	9	27203572	27203572	G	A	SNP	TEK	NM_000459.3	human	genbank	54_36p	+1	reviewed	missense	c.2968	p.E990K	1.000	superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc	HMMPfam_Ig_Tie2_1,HMMSmart_EGF,HMMPfam_EGF_2,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_SSF48726,superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR	-	no_errors
KLHL29	114818	genome.wustl.edu	36	2	23779620	23779620	+	Missense_Mutation	SNP	T	T	G			TCGA-AB-2976-03A-01D-0739-09	TCGA-AB-2976-11A-01D-0739-09					T	T	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	2	23779620	23779620	T	G	SNP	KLHL29	XM_001717454.1	human	genbank	54_36p	+1	model	missense	c.2975	p.L992R	0.898	HMMSmart_SM00612	superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,HMMPfam_BACK,superfamily_Galactose oxidase central domain,HMMPfam_Kelch_2,HMMSmart_SM00612,HMMPfam_Kelch_1	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
SDK2	54549	genome.wustl.edu	36	17	68908757	68908757	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2976-03A-01D-0739-09	TCGA-AB-2976-11A-01D-0739-09					G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	17	68908757	68908757	G	T	SNP	SDK2	ENST00000334543	human	ensembl	54_36p	-1	known	missense	c.2005	p.P669T	1.000	superfamily_FN_III-like	HMMSmart_IGc2,HMMPfam_ig,superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IG,superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3	-	no_errors
KCNQ3	3786	genome.wustl.edu	36	8	133251847	133251847	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2976-03A-01D-0739-09	TCGA-AB-2976-11A-01D-0739-09	C	C			C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	8	133251847	133251847	C	T	SNP	KCNQ3	NM_004519	human	genbank	54_36p	-1	reviewed	missense	c.1151	p.R384K	1.000	NULL	HMMPfam_Ion_trans,HMMPfam_KCNQ_channel,superfamily_SSF81324	-	no_errors
TTC39A	22996	genome.wustl.edu	36	1	51547674	51547674	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2976-03A-01D-0739-09	TCGA-AB-2976-11A-01D-0739-09					C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	1	51547674	51547674	C	A	SNP	TTC39A	ENST00000371750	human	ensembl	54_36p	-1	known	missense	c.443	p.G148V	0.000	HMMPfam_Deme6	HMMPfam_Deme6,superfamily_TPR-like,HMMSmart_SM00028	-	no_errors
ANKRD13A	88455	genome.wustl.edu	36	12	108956068	108956068	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2976-03A-01D-0739-09	TCGA-AB-2976-11A-01D-0739-09					G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	12	108956068	108956068	G	A	SNP	ANKRD13A	NM_033121.1	human	genbank	54_36p	+1	validated	missense	c.1432	p.V478M	0.364	NULL	superfamily_Ankyrin repeat,HMMPfam_Ank,HMMSmart_SM00248,HMMSmart_SM00726,HMMPfam_UIM	-	no_errors
