Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
PLCH2	9651	genome.wustl.edu	36	1	2408210	2408210	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2977-03A-01D-0739-09	TCGA-AB-2977-11A-01D-0739-09	C	C			C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	1	2408210	2408210	C	T	SNP	PLCH2	NM_014638	human	genbank	54_36p	+1	provisional	missense	c.821	p.A274V	0.000	HMMPfam_efhand_like,superfamily_EF-hand	HMMPfam_C2,HMMSmart_SM00239,HMMPfam_PI-PLC-X,HMMSmart_SM00148,HMMPfam_PI-PLC-Y,HMMSmart_SM00149,HMMPfam_PH,HMMSmart_SM00233,HMMSmart_SM00054,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_efhand_like,superfamily_PLC-like phosphodiesterases,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_EF-hand,superfamily_PH domain-like	-	no_errors
FBXL7	23194	genome.wustl.edu	36	5	15989890	15989890	+	Silent	SNP	C	C	T			TCGA-AB-2977-03A-01D-0739-09	TCGA-AB-2977-11A-01D-0739-09	C	C			C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	5	15989890	15989890	C	T	SNP	FBXL7	NM_012304	human	genbank	54_36p	+1	reviewed	silent	c.1071	p.I357	1.000	HMMSmart_SM00367,superfamily_RNI-like	HMMPfam_F-box,HMMSmart_SM00256,HMMSmart_SM00367,superfamily_RNI-like	-	no_errors
RIN1	9610	genome.wustl.edu	36	11	65859692	65859692	+	Silent	SNP	G	G	A			TCGA-AB-2977-03A-01D-0739-09	TCGA-AB-2977-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	11	65859692	65859692	G	A	SNP	RIN1	NM_004292	human	genbank	54_36p	-1	validated	silent	c.420	p.D140	1.000	HMMSmart_SM00252,superfamily_SH2 domain	HMMPfam_RA,HMMSmart_SM00314,HMMSmart_SM00252,HMMPfam_VPS9,HMMSmart_SM00167,superfamily_VPS9 domain (Pfam 02204),superfamily_SH2 domain	-	no_errors
KIAA0226L	80183	genome.wustl.edu	36	13	45844149	45844149	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2977-03A-01D-0739-09	TCGA-AB-2977-11A-01D-0739-09	C	C			C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	13	45844149	45844149	C	T	SNP	C13orf18	NM_025113	human	genbank	54_36p	-1	validated	missense	c.463	p.A155T	0.001	NULL	NULL	-	no_errors
OR5AR1	219493	genome.wustl.edu	36	11	56188275	56188275	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2977-03A-01D-0739-09	TCGA-AB-2977-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	11	56188275	56188275	G	A	SNP	OR5AR1	NM_001004730	human	genbank	54_36p	+1	provisional	missense	c.538	p.E180K	1.000	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
ZNF721	170960	genome.wustl.edu	36	4	427878	427878	+	Silent	SNP	T	T	C			TCGA-AB-2977-03A-01D-0739-09	TCGA-AB-2977-11A-01D-0739-09	T	T			T	T	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	4	427878	427878	T	C	SNP	ZNF721	NM_133474	human	genbank	54_36p	-1	validated	silent	c.378	p.Q126	0.017	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
MIR891A	100126341	genome.wustl.edu	36	X	144917082	144917082	+	RNA	SNP	G	G	T			TCGA-AB-2977-03A-01D-0739-09	TCGA-AB-2977-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	X	144917082	144917082	G	T	SNP	MIRN891A	ENST00000401237	human	ensembl	54_36p	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors
LOC441644	441644	genome.wustl.edu	36	12	93058231	93058231	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2977-03A-01D-0739-09	TCGA-AB-2977-11A-01D-0739-09	C	C			C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	12	93058231	93058231	C	T	SNP	LOC441644	XM_001714973	human	genbank	54_36p	+1	model	missense	c.158	p.T53M	1.000	HMMPfam_ELM2	HMMPfam_ELM2	-	no_errors
TTN	7273	genome.wustl.edu	36	2	179110367	179110367	+	Silent	SNP	C	C	T			TCGA-AB-2977-03A-01D-0739-09	TCGA-AB-2977-11A-01D-0739-09	C	C			C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	2	179110367	179110367	C	T	SNP	TTN	NM_133378	human	genbank	54_36p	-1	reviewed	missense	c.92108	p.S30703N	0.999	NULL	superfamily_Ypt/Rab-GAP domain of gyp1p,PatternScan_RCC1_2,PatternScan_IG_MHC,HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,HMMPfam_PPAK,superfamily_Fibronectin type III,HMMPfam_I-set,HMMPfam_ig,HMMPfam_Titin_Z,superfamily_Immunoglobulin,superfamily_vWA-like,superfamily_beta-sandwich domain of Sec23/24	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
IDH1	3417	genome.wustl.edu	36	2	208821358	208821358	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2977-03A-01D-0739-09	TCGA-AB-2977-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	2	208821358	208821358	G	A	SNP	IDH1	NM_005896	human	genbank	54_36p	-1	reviewed	missense	c.394	p.R132C	1.000	HMMPfam_Iso_dh,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like	HMMPfam_Iso_dh,PatternScan_IDH_IMDH,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like	-	no_errors
GPR98	84059	genome.wustl.edu	36	5	89961074	89961074	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2977-03A-01D-0739-09	TCGA-AB-2977-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	5	89961074	89961074	G	A	SNP	GPR98	NM_032119	human	genbank	54_36p	+1	reviewed	missense	c.1801	p.D601N	1.000	NULL	HMMPfam_GPS,PatternScan_LIPOYL,HMMPfam_Calx-beta,HMMSmart_SM00237,HMMPfam_EPTP,PatternScan_A_DEAMINASE,superfamily_Concanavalin A-like lectins/glucanases	-	no_errors
