Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
TRIM24	8805	genome.wustl.edu	36	7	137916991	137916991	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2979-03A-01D-0739-09	TCGA-AB-2979-11A-01D-0739-09	C	C			C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	7	137916991	137916991	C	T	SNP	TRIM24	NM_015905	human	genbank	54_36p	+1	reviewed	missense	c.2728	p.R910C	0.998	HMMPfam_Bromodomain,HMMSmart_SM00297,superfamily_Bromodomain	HMMPfam_zf-B_box,HMMSmart_SM00336,HMMPfam_Bromodomain,HMMSmart_SM00297,superfamily_Bromodomain,HMMSmart_SM00184,HMMSmart_SM00249,HMMSmart_SM00502,superfamily_FYVE/PHD zinc finger,PatternScan_ZF_RING_1,PatternScan_BROMODOMAIN_1,HMMPfam_zf-C3HC4,PatternScan_ZF_PHD_1,HMMPfam_PHD,superfamily_RING/U-box	-	no_errors
CEBPA	1050	genome.wustl.edu	36	19	38484235	38484240	+	In_Frame_Del	DEL	TCCACG	TCCACG	-			TCGA-AB-2979-03A-01D-0739-09	TCGA-AB-2979-11A-01D-0739-09	TCCACG	TCCACG			TCCACG	TCCACG	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	19	38484235	38484240	TCCACG	-	DEL	CEBPA	NM_004364	human	genbank	54_36p	-1	reviewed	in_frame_del	c.926_921	p.NVE307in_frame_delK	1.000:1.000:1.000:1.000:1.000:1.000	HMMSmart_BRLZ,HMMPfam_bZIP_2	PatternScan_BZIP_BASIC,HMMSmart_BRLZ,HMMPfam_bZIP_2	-	no_errors
LIMA1	51474	genome.wustl.edu	36	12	48902219	48902220	+	Frame_Shift_Ins	INS	-	-	T			TCGA-AB-2979-03A-01D-0739-09	TCGA-AB-2979-11A-01D-0739-09	0	0			-	-	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	12	48902219	48902220	-	T	INS	LIMA1	NM_016357	human	genbank	54_36p	-1	validated	frame_shift_ins	c.482_481	p.M161fs	0.998:0.974	NULL	superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM	-	no_errors
LOC100131040	100131040	genome.wustl.edu	36	5	114534278	114534278	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2979-03A-01D-0739-09	TCGA-AB-2979-11A-01D-0739-09	A	A			A	A	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	5	114534278	114534278	A	G	SNP	LOC100131040	XM_001715034	human	genbank	54_36p	+1	model	missense	c.73	p.S25G	0.001	NULL	NULL	-	no_errors
TMEM198	130612	genome.wustl.edu	36	2	220122163	220122163	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2979-03A-01D-0739-09	TCGA-AB-2979-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	2	220122163	220122163	G	A	SNP	TMEM198	NM_001005209	human	genbank	54_36p	+1	provisional	missense	c.788	p.R263Q	0.998	NULL	NULL	-	no_errors
INS-IGF2	723961	genome.wustl.edu	36	11	2138649	2138649	+	Silent	SNP	G	G	A			TCGA-AB-2979-03A-01D-0739-09	TCGA-AB-2979-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	11	2138649	2138649	G	A	SNP	INS-IGF2	NM_001042376	human	genbank	54_36p	-1	reviewed	silent	c.129	p.C43	0.999	HMMPfam_Insulin,HMMSmart_SM00078,superfamily_Insulin-like	HMMPfam_Insulin,HMMSmart_SM00078,superfamily_Insulin-like	-	no_errors
PKHD1	5314	genome.wustl.edu	36	6	51632140	51632140	+	Silent	SNP	G	G	C			TCGA-AB-2979-03A-01D-0739-09	TCGA-AB-2979-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	6	51632140	51632140	G	C	SNP	PKHD1	NM_138694	human	genbank	54_36p	-1	reviewed	silent	c.10743	p.L3581	0.391	NULL	HMMPfam_TIG,HMMSmart_SM00429,HMMSmart_SM00710,superfamily_Pectin lyase-like,superfamily_E set domains,HMMPfam_G8	-	no_errors
ZYG11A	440590	genome.wustl.edu	36	1	53102280	53102280	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AB-2979-03A-01D-0739-09	TCGA-AB-2979-11A-01D-0739-09	C	C			C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	1	53102280	53102280	C	T	SNP	ZYG11A	XM_001133615	human	genbank	54_36p	+1	model	nonsense	c.1189	p.R397*	0.996	NULL	superfamily_ARM repeat,superfamily_RNI-like	-	no_errors
KCNA3	3738	genome.wustl.edu	36	1	111018259	111018259	+	Silent	SNP	C	C	T			TCGA-AB-2979-03A-01D-0739-09	TCGA-AB-2979-11A-01D-0739-09	C	C			C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	1	111018259	111018259	C	T	SNP	KCNA3	NM_002232	human	genbank	54_36p	-1	reviewed	silent	c.696	p.P232	0.967	superfamily_SSF81324	HMMSmart_BTB,HMMPfam_K_tetra,HMMPfam_Ion_trans,superfamily_BTB/POZ_fold,superfamily_SSF81324	-	no_errors
GBP4	115361	genome.wustl.edu	36	1	89424735	89424735	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2979-03A-01D-0739-09	TCGA-AB-2979-11A-01D-0739-09	C	C			C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	1	89424735	89424735	C	T	SNP	GBP4	NM_052941	human	genbank	54_36p	-1	validated	missense	c.1576	p.E526K	0.530	HMMPfam_GBP_C,superfamily_GBP	HMMPfam_GBP_C,HMMPfam_GBP,superfamily_GBP,superfamily_SSF52540	-	no_errors
