Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
MYCBP2	23077	genome.wustl.edu	36	13	76628271	76628271	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2991-03A-01D-0739-09	TCGA-AB-2991-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	13	76628271	76628271	G	A	SNP	MYCBP2	NM_015057	human	genbank	54_36p	-1	validated	missense	c.6724	p.R2242C	1.000	superfamily_E set domains	HMMPfam_RCC1,PatternScan_RCC1_2,HMMSmart_SM00184,superfamily_Galactose-binding domain-like,superfamily_RCC1/BLIP-II,HMMPfam_PHR,superfamily_E set domains,superfamily_RING/U-box	-	no_errors
OSTalpha	200931	genome.wustl.edu	36	3	197439460	197439460	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2991-03A-01D-0739-09	TCGA-AB-2991-11A-01D-0739-09	C	C			C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	3	197439460	197439460	C	T	SNP	OSTalpha	NM_152672	human	genbank	54_36p	+1	validated	missense	c.440	p.T147M	0.998	NULL	NULL	-	no_errors
ZNF788	388507	genome.wustl.edu	36	19	12084966	12084966	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2991-03A-01D-0739-09	TCGA-AB-2991-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	19	12084966	12084966	G	A	SNP	ZNF788	ENST00000339302	human	ensembl	54_36p	+1	known	missense	c.1604	p.R535H	0.989	superfamily_SSF57667	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
KIDINS220	57498	genome.wustl.edu	36	2	8807811	8807811	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2991-03A-01D-0739-09	TCGA-AB-2991-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	2	8807811	8807811	G	A	SNP	KIDINS220	NM_020738	human	genbank	54_36p	-1	validated	missense	c.3296	p.P1099L	0.282	NULL	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,superfamily_SAM/Pointed domain,HMMPfam_KAP_NTPase	-	no_errors
MAX	4149	genome.wustl.edu	36	14	64614500	64614500	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2991-03A-01D-0739-09	TCGA-AB-2991-11A-01D-0739-09	C	C			C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	14	64614500	64614500	C	T	SNP	MAX	NM_002382	human	genbank	54_36p	-1	reviewed	missense	c.179	p.R60Q	1.000	HMMPfam_HLH,HMMSmart_SM00353,superfamily_HLH helix-loop-helix DNA-binding domain	HMMPfam_HLH,HMMSmart_SM00353,superfamily_HLH helix-loop-helix DNA-binding domain	-	no_errors
ARID2	196528	genome.wustl.edu	36	12	44540986	44540986	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AB-2991-03A-01D-0739-09	TCGA-AB-2991-11A-01D-0739-09	C	C			C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	12	44540986	44540986	C	T	SNP	ARID2	NM_152641	human	genbank	54_36p	+1	validated	nonsense	c.4909	p.Q1637*	1.000	PatternScan_ZINC_FINGER_C2H2_1	"HMMPfam_ARID,HMMSmart_SM00501,superfamily_ARID-like,PatternScan_ZINC_FINGER_C2H2_1,superfamily_""Winged helix"" DNA-binding domain"	-	no_errors
LOC100132232	100132232	genome.wustl.edu	36	12	118403217	118403217	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2991-03A-01D-0739-09	TCGA-AB-2991-11A-01D-0739-09	C	C			C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	12	118403217	118403217	C	T	SNP	LOC100132232	XM_001716552	human	genbank	54_36p	-1	model	missense	c.88	p.D30N	0.075	NULL	NULL	-	no_errors
CCDC136	64753	genome.wustl.edu	36	7	128239200	128239200	+	Silent	SNP	G	G	A			TCGA-AB-2991-03A-01D-0739-09	TCGA-AB-2991-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	7	128239200	128239200	G	A	SNP	CCDC136	NM_022742	human	genbank	54_36p	+1	validated	silent	c.2139	p.R713	0.972	superfamily_Spectrin repeat	superfamily_Prefoldin,superfamily_Spectrin repeat	-	no_errors
CNOT3	4849	genome.wustl.edu	36	19	59348746	59348746	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2991-03A-01D-0739-09	TCGA-AB-2991-11A-01D-0739-09	C	C			C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	19	59348746	59348746	C	T	SNP	CNOT3	ENST00000358389	human	ensembl	54_36p	+1	known	missense	c.1511	p.T504I	0.000	NULL	HMMPfam_Not3	-	no_errors
LOC100128340	100128340	genome.wustl.edu	36	5	177310899	177310899	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2991-03A-01D-0739-09	TCGA-AB-2991-11A-01D-0739-09	C	C			C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	5	177310899	177310899	C	T	SNP	LOC100128340	XM_001721455	human	genbank	54_36p	+1	model	missense	c.103	p.P35S	0.000	NULL	NULL	-	no_errors
KRTAP26-1	388818	genome.wustl.edu	36	21	30613984	30613984	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2991-03A-01D-0739-09	TCGA-AB-2991-11A-01D-0739-09	C	C			C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	21	30613984	30613984	C	T	SNP	KRTAP26-1	NM_203405	human	genbank	54_36p	-1	validated	missense	c.241	p.G81S	0.000	HMMPfam_PMG	HMMPfam_PMG	-	no_errors
VCAM1	7412	genome.wustl.edu	36	1	100969425	100969425	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2991-03A-01D-0739-09	TCGA-AB-2991-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	1	100969425	100969425	G	A	SNP	VCAM1	NM_001078	human	genbank	54_36p	+1	reviewed	missense	c.1288	p.V430M	0.987	HMMPfam_C2-set,superfamily_Immunoglobulin	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_C2-set,HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors
