Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
MUC5B	727897	genome.wustl.edu	36	11	1229284	1229284	+	Silent	SNP	C	C	T			TCGA-AB-2997-03A-01D-0739-09	TCGA-AB-2997-11A-01D-0739-09					C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	11	1229284	1229284	C	T	SNP	MUC5B	NM_002458.1	human	genbank	54_36p	+1	validated	silent	c.14607	p.T4869	0.000	NULL	HMMSmart_SM00216,HMMPfam_VWD,HMMPfam_C8,superfamily_Serine proterase inhibitors,HMMPfam_TIL,HMMSmart_SM00214,HMMSmart_SM00215,superfamily_PMP inhibitors,PatternScan_VWFC_1,HMMPfam_VWC,HMMSmart_SM00041,HMMPfam_Cys_knot,PatternScan_CTCK_1	-	no_errors
SNHG10	283596	genome.wustl.edu	36	14	95069562	95069562	+	RNA	SNP	C	C	T			TCGA-AB-2997-03A-01D-0739-09	TCGA-AB-2997-11A-01D-0739-09					C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	14	95069562	95069562	C	T	SNP	SNHG10	NR_003138.2	human	genbank	54_36p	-1	validated	rna	NULL	NULL	1.000	-	-	-	no_errors
DNAH9	1770	genome.wustl.edu	36	17	11513530	11513530	+	Missense_Mutation	SNP	T	T	G			TCGA-AB-2997-03A-01D-0739-09	TCGA-AB-2997-11A-01D-0739-09					T	T	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	17	11513530	11513530	T	G	SNP	DNAH9	NM_001372.3	human	genbank	54_36p	+1	reviewed	missense	c.3047	p.L1016R	1.000	NULL	HMMPfam_DHC_N1,superfamily_Spectrin repeat,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA_5,HMMPfam_Dynein_heavy,PatternScan_CPSASE_2	-	no_errors
CELSR1	9620	genome.wustl.edu	36	22	45144326	45144326	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2997-03A-01D-0739-09	TCGA-AB-2997-11A-01D-0739-09					G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	22	45144326	45144326	G	T	SNP	CELSR1	NM_014246.1	human	genbank	54_36p	-1	reviewed	missense	c.7799	p.P2600H	0.998	HMMPfam_7tm_2	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_SM00179,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2,PatternScan_ASX_HYDROXYL,HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1,HMMSmart_SM00008,HMMPfam_HRM,HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2	-	no_errors
SLC30A6	55676	genome.wustl.edu	36	2	32298967	32298967	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2997-03A-01D-0739-09	TCGA-AB-2997-11A-01D-0739-09					A	A	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	2	32298967	32298967	A	G	SNP	SLC30A6	NM_017964.2	human	genbank	54_36p	+1	provisional	missense	c.1067	p.H356R	1.000	NULL	HMMPfam_Cation_efflux	-	no_errors
DIS3	22894	genome.wustl.edu	36	13	72244339	72244339	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2997-03A-01D-0739-09	TCGA-AB-2997-11A-01D-0739-09					C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	13	72244339	72244339	C	T	SNP	DIS3	NM_014953.1	human	genbank	54_36p	-1	validated	missense	c.1462	p.D488N	1.000	HMMPfam_RNB	superfamily_PIN domain-like,HMMSmart_SM00670,HMMPfam_RNB,PatternScan_RIBONUCLEASE_II	-	no_errors
DOK2	9046	genome.wustl.edu	36	8	21825961	21825961	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2997-03A-01D-0739-09	TCGA-AB-2997-11A-01D-0739-09					G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	8	21825961	21825961	G	A	SNP	DOK2	NM_003974.2	human	genbank	54_36p	-1	reviewed	missense	c.70	p.R24C	0.996	superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH	superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,HMMPfam_IRS,HMMSmart_PTBI	-	no_errors
CNTN5	53942	genome.wustl.edu	36	11	99450197	99450197	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2997-03A-01D-0739-09	TCGA-AB-2997-11A-01D-0739-09					C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	11	99450197	99450197	C	T	SNP	CNTN5	NM_014361.2	human	genbank	54_36p	+1	reviewed	missense	c.1541	p.S514F	0.995	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408	HMMPfam_I-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_V-set,HMMPfam_ig,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	-	no_errors
MYBL2	4605	genome.wustl.edu	36	20	41777325	41777325	+	Silent	SNP	G	G	A			TCGA-AB-2997-03A-01D-0739-09	TCGA-AB-2997-11A-01D-0739-09					G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	20	41777325	41777325	G	A	SNP	MYBL2	NM_002466.2	human	genbank	54_36p	+1	reviewed	silent	c.1962	p.T654	0.000	NULL	HMMSmart_SM00717,HMMPfam_Myb_DNA-binding,superfamily_Homeodomain-like,HMMPfam_Cmyb_C	-	no_errors
PSG7	5676	genome.wustl.edu	36	19	48131669	48131669	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2997-03A-01D-0739-09	TCGA-AB-2997-11A-01D-0739-09					G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	19	48131669	48131669	G	T	SNP	PSG7	NM_002783.2	human	genbank	54_36p	-1	reviewed	missense	c.157	p.L53I	0.003	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig	-	pseudogene
LOC648927	648927	genome.wustl.edu	36	X	95115225	95115225	+	RNA	SNP	G	G	A			TCGA-AB-2997-03A-01D-0739-09	TCGA-AB-2997-11A-01D-0739-09					G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	X	95115225	95115225	G	A	SNP	LOC648927	XR_038906.1	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.998	-	-	-	pseudogene
AKAP13	11214	genome.wustl.edu	36	15	84063349	84063355	+	Frame_Shift_Del	DEL	AAGATCA	AAGATCA	-			TCGA-AB-2997-03A-01D-0739-09	TCGA-AB-2997-11A-01D-0739-09					AAGATCA	AAGATCA	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	15	84063349	84063355	AAGATCA	-	DEL	AKAP13	NM_006738.4	human	genbank	54_36p	+1	reviewed	frame_shift_del	c.6052_6058	p.K2018fs	1.000:1.000:1.000:1.000:1.000:1.000:1.000	superfamily_DH-domain,HMMPfam_RhoGEF,HMMSmart_RhoGEF	superfamily_ANK,HMMPfam_RII_binding_1,superfamily_SSF57889,HMMSmart_C1,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,PatternScan_EF_HAND_1,superfamily_DH-domain,HMMPfam_RhoGEF,HMMSmart_RhoGEF,HMMPfam_PH,superfamily_SSF50729,HMMSmart_PH	-	no_errors
LOC100134687	100134687	genome.wustl.edu	36	7	6727252	6727252	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2997-03A-01D-0739-09	TCGA-AB-2997-11A-01D-0739-09					A	A	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	7	6727252	6727252	A	G	SNP	LOC100134687	XM_001725648.1	human	genbank	54_36p	-1	model	missense	c.313	p.W105R	0.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon
TPTE2	93492	genome.wustl.edu	36	13	18910252	18910252	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2997-03A-01D-0739-09	TCGA-AB-2997-11A-01D-0739-09					C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	13	18910252	18910252	C	T	SNP	TPTE2	NM_199254.1	human	genbank	54_36p	-1	validated	missense	c.1015	p.E339K	0.271	superfamily_(Phosphotyrosine protein) phosphatases II	superfamily_Voltage-gated potassium channels,superfamily_(Phosphotyrosine protein) phosphatases II,PatternScan_TYR_PHOSPHATASE_1,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2	-	no_errors
CUL3	8452	genome.wustl.edu	36	2	225157935	225157935	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2997-03A-01D-0739-09	TCGA-AB-2997-11A-01D-0739-09					C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	2	225157935	225157935	C	A	SNP	CUL3	NM_003590.3	human	genbank	54_36p	-1	validated	missense	c.36	p.K12N	1.000	NULL	"superfamily_Cullin repeat,HMMPfam_Cullin,superfamily_Cullin homology domain,HMMSmart_SM00182,superfamily_""Winged helix"" DNA-binding domain,HMMPfam_Cullin_Nedd8,PatternScan_CULLIN_1"	-	no_errors
