Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
CACNA1E	777	genome.wustl.edu	36	1	180021175	180021175	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-3001-03A-01D-0739-09	TCGA-AB-3001-11A-01D-0739-09	C	C			C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	1	180021175	180021175	C	G	SNP	CACNA1E	NM_000721	human	genbank	54_36p	+1	reviewed	missense	c.5677	p.Q1893E	1.000	HMMPfam_Ca_chan_IQ	HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ,superfamily_Voltage-gated potassium channels	-	no_errors
LRIG3	121227	genome.wustl.edu	36	12	57565928	57565928	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-3001-03A-01D-0739-09	TCGA-AB-3001-11A-01D-0739-09	C	C			C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	12	57565928	57565928	C	T	SNP	LRIG3	NM_153377	human	genbank	54_36p	-1	provisional	missense	c.1196	p.R399H	0.998	HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00365,superfamily_RNI-like	HMMPfam_LRRCT,HMMSmart_SM00082,HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,HMMSmart_SM00365,superfamily_Immunoglobulin,superfamily_RNI-like	-	no_errors
AFF2	2334	genome.wustl.edu	36	X	147699135	147699135	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-3001-03A-01D-0739-09	TCGA-AB-3001-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	X	147699135	147699135	G	A	SNP	AFF2	NM_002025	human	genbank	54_36p	+1	validated	missense	c.1085	p.R362Q	1.000	HMMPfam_AF-4	HMMPfam_AF-4	-	no_errors
LUZP2	338645	genome.wustl.edu	36	11	24716425	24716425	+	Splice_Site	SNP	G	G	C			TCGA-AB-3001-03A-01D-0739-09	TCGA-AB-3001-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	11	24716425	24716425	G	C	SNP	LUZP2	NM_001009909	human	genbank	54_36p	+1	validated	splice_site	c.333+1	e4+1	0.994	-	-	-	no_errors
PRPF8	10594	genome.wustl.edu	36	17	1508697	1508697	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-3001-03A-01D-0739-09	TCGA-AB-3001-11A-01D-0739-09	C	C			C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	17	1508697	1508697	C	T	SNP	PRPF8	NM_006445	human	genbank	54_36p	-1	reviewed	missense	c.5249	p.G1750E	0.997	NULL	HMMPfam_Mov34,HMMSmart_SM00232,HMMPfam_PRO8NT,HMMPfam_PROCN,HMMPfam_PROCT,HMMPfam_U6-snRNA_bdg,HMMPfam_U5_2-snRNA_bdg,HMMPfam_RRM_4	-	no_errors
SI	6476	genome.wustl.edu	36	3	166213499	166213499	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-3001-03A-01D-0739-09	TCGA-AB-3001-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	3	166213499	166213499	G	T	SNP	SI	NM_001041	human	genbank	54_36p	-1	validated	missense	c.4025	p.T1342K	0.808	HMMPfam_Glyco_hydro_31,superfamily_(Trans)glycosidases	HMMPfam_Glyco_hydro_31,PatternScan_GLYCOSYL_HYDROL_F31_1,PatternScan_GLYCOSYL_HYDROL_F31_2,HMMPfam_Trefoil,HMMSmart_SM00018,superfamily_Trefoil,superfamily_(Trans)glycosidases,PatternScan_P_TREFOIL	-	no_errors
USP9X	8239	genome.wustl.edu	36	X	40895240	40895240	+	Silent	SNP	G	G	A			TCGA-AB-3001-03A-01D-0739-09	TCGA-AB-3001-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	X	40895240	40895240	G	A	SNP	USP9X	NM_001039590	human	genbank	54_36p	+1	reviewed	silent	c.1749	p.A583	0.996	NULL	HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2,superfamily_Cysteine proteinases	-	no_errors
C10orf118	55088	genome.wustl.edu	36	10	115894360	115894360	+	Silent	SNP	G	G	A			TCGA-AB-3001-03A-01D-0739-09	TCGA-AB-3001-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	10	115894360	115894360	G	A	SNP	C10orf118	NM_018017	human	genbank	54_36p	-1	validated	silent	c.1107	p.G369	0.950	NULL	superfamily_Prefoldin	-	no_errors
LOC26010	26010	genome.wustl.edu	36	2	201045842	201045842	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-3001-03A-01D-0739-09	TCGA-AB-3001-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	2	201045842	201045842	G	T	SNP	LOC26010	NM_001100422	human	genbank	54_36p	+1	validated	missense	c.1103	p.S368I	1.000	HMMPfam_DUF1387	HMMPfam_DUF1387	-	no_errors
C5orf25	375484	genome.wustl.edu	36	5	175649773	175649773	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-3001-03A-01D-0739-09	TCGA-AB-3001-11A-01D-0739-09	C	C			C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	5	175649773	175649773	C	T	SNP	C5orf25	NM_198567	human	genbank	54_36p	+1	validated	missense	c.583	p.R195C	0.021	NULL	NULL	-	no_errors
HIVEP1	3096	genome.wustl.edu	36	6	12230515	12230515	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-3001-03A-01D-0739-09	TCGA-AB-3001-11A-01D-0739-09	T	T			T	T	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	6	12230515	12230515	T	C	SNP	HIVEP1	NM_002114	human	genbank	54_36p	+1	validated	missense	c.2501	p.L834S	0.997	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
WAC	51322	genome.wustl.edu	36	10	28945298	28945298	+	Splice_Site	SNP	G	G	A			TCGA-AB-3001-03A-01D-0739-09	TCGA-AB-3001-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	10	28945298	28945298	G	A	SNP	WAC	NM_016628	human	genbank	54_36p	+1	reviewed	splice_site	c.1746+1	e12+1	1.000	-	-	-	no_errors
RUFY1	80230	genome.wustl.edu	36	5	178958402	178958402	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-3001-03A-01D-0739-09	TCGA-AB-3001-11A-01D-0739-09	C	C			C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	5	178958402	178958402	C	G	SNP	RUFY1	NM_025158	human	genbank	54_36p	+1	validated	missense	c.1735	p.L579V	1.000	NULL	HMMPfam_FYVE,HMMSmart_SM00064,HMMPfam_RUN,HMMSmart_SM00593,superfamily_FYVE/PHD zinc finger	-	no_errors
