Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
ADAMTS6	11174	broad.mit.edu	36	5	64547062	64547063	+	Frame_Shift_Ins	INS	-	T	T	novel		TCGA-AG-A01Y-01	TCGA-AG-A01Y-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_197941	exon19	c.2281_2282insA	p.S761fs	.	.	.
NFKB2	4791	broad.mit.edu	36	10	104148662	104148663	+	Frame_Shift_Ins	INS	-	A	A	novel		TCGA-AG-A01Y-01	TCGA-AG-A01Y-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	.	.	.	.	.	.	.
SVOPL	136306	broad.mit.edu	36	7	137963456	137963456	+	Silent	SNP	G	A	A	novel		TCGA-AG-A01Y-01	TCGA-AG-A01Y-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_174959	exon7	c.C600T	p.I200I	.	.	.
SYCP2	10388	broad.mit.edu	36	20	57922605	57922605	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A01Y-01	TCGA-AG-A01Y-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_014258	exon10	c.T731C	p.F244S	.	.	.
SLC17A9	63910	broad.mit.edu	36	20	61067455	61067455	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AG-A01Y-01	TCGA-AG-A01Y-01	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_022082	exon10	c.A994T	p.T332S	.	.	.
SEC23A	10484	broad.mit.edu	36	14	38594219	38594219	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A01Y-01	TCGA-AG-A01Y-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006364	exon14	c.T1538C	p.I513T	.	.	.
SPTB	6710	broad.mit.edu	36	14	64340121	64340121	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A01Y-01	TCGA-AG-A01Y-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001024858	exon3	c.G431A	p.R144H	.	.	.
SYDE1	85360	broad.mit.edu	36	19	15082024	15082024	+	Silent	SNP	C	A	A	novel		TCGA-AG-A01Y-01	TCGA-AG-A01Y-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033025	exon3	c.C940A	p.R314R	.	.	.
LRG1	116844	broad.mit.edu	36	19	4489669	4489669	+	Silent	SNP	G	A	A	novel		TCGA-AG-A01Y-01	TCGA-AG-A01Y-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_052972	exon2	c.C327T	p.P109P	.	.	.
PSMC4	5704	broad.mit.edu	36	19	45172365	45172365	+	Silent	SNP	C	T	T	novel		TCGA-AG-A01Y-01	TCGA-AG-A01Y-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153001	exon5	c.C471T	p.F157F	.	.	.
CACNG7	59284	broad.mit.edu	36	19	59110440	59110440	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A01Y-01	TCGA-AG-A01Y-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_031896	exon3	c.G293A	p.R98H	.	.	.
NLRP4	147945	broad.mit.edu	36	19	61061383	61061383	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A01Y-01	TCGA-AG-A01Y-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_134444	exon3	c.C812T	p.P271L	.	.	.
MUC16	94025	broad.mit.edu	36	19	8910680	8910680	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A01Y-01	TCGA-AG-A01Y-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_024690	exon5	c.G31951T	p.A10651S	.	.	.
ZNF615	284370	broad.mit.edu	36	19	57188065	57188065	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-AG-A01Y-01	TCGA-AG-A01Y-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198480	exon6	c.2076delA	p.K692fs	.	.	.
POLR2K	5440	broad.mit.edu	36	8	101232808	101232808	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A01Y-01	TCGA-AG-A01Y-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005034	exon2	c.T49C	p.Y17H	.	.	.
COL22A1	169044	broad.mit.edu	36	8	139675590	139675590	+	Silent	SNP	C	T	T	novel		TCGA-AG-A01Y-01	TCGA-AG-A01Y-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152888	exon63	c.G4467A	p.P1489P	.	.	.
MYBL1	4603	broad.mit.edu	36	8	67655078	67655078	+	Silent	SNP	G	A	A	novel		TCGA-AG-A01Y-01	TCGA-AG-A01Y-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080416	exon9	c.C945T	p.D315D	.	.	.
KCNB2	9312	broad.mit.edu	36	8	74011257	74011257	+	Silent	SNP	A	G	G	novel		TCGA-AG-A01Y-01	TCGA-AG-A01Y-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004770	exon3	c.A1113G	p.S371S	.	.	.
RALYL	138046	broad.mit.edu	36	8	85924770	85924770	+	Silent	SNP	C	T	T	novel		TCGA-AG-A01Y-01	TCGA-AG-A01Y-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001100392	exon6	c.C366T	p.G122G	.	.	.
VAV3	10451	broad.mit.edu	36	1	108095298	108095298	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A01Y-01	TCGA-AG-A01Y-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_006113	exon13	c.G1223A	p.R408Q	.	.	.
CELSR2	1952	broad.mit.edu	36	1	109617678	109617678	+	Silent	SNP	C	T	T	novel		TCGA-AG-A01Y-01	TCGA-AG-A01Y-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001408	exon33	c.C8607T	p.S2869S	.	.	.
KCNA2	3737	broad.mit.edu	36	1	110948440	110948440	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A01Y-01	TCGA-AG-A01Y-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_004974	exon2	c.G488A	p.R163K	.	.	.
KCNA3	3738	broad.mit.edu	36	1	111018313	111018313	+	Silent	SNP	G	A	A	novel		TCGA-AG-A01Y-01	TCGA-AG-A01Y-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002232	exon1	c.C642T	p.R214R	.	.	.
HSD3B1	3283	broad.mit.edu	36	1	119855721	119855721	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A01Y-01	TCGA-AG-A01Y-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000862	exon3	c.G218T	p.C73F	.	.	.
SELENBP1	8991	broad.mit.edu	36	1	149603730	149603730	+	Silent	SNP	C	T	T	novel		TCGA-AG-A01Y-01	TCGA-AG-A01Y-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003944	exon12	c.G1332A	p.V444V	.	.	.
HRNR	388697	broad.mit.edu	36	1	150459787	150459787	+	Silent	SNP	G	A	A	novel		TCGA-AG-A01Y-01	TCGA-AG-A01Y-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001009931	exon3	c.C942T	p.S314S	.	.	.
UBR4	23352	broad.mit.edu	36	1	19385687	19385687	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A01Y-01	TCGA-AG-A01Y-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_020765	exon14	c.G1684A	p.A562T	.	.	.
CFHR5	81494	broad.mit.edu	36	1	195218799	195218799	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A01Y-01	TCGA-AG-A01Y-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_030787	exon2	c.G220A	p.E74K	.	.	.
ETNK2	55224	broad.mit.edu	36	1	202382476	202382476	+	Silent	SNP	G	A	A	novel		TCGA-AG-A01Y-01	TCGA-AG-A01Y-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018208	exon3	c.C558T	p.H186H	.	.	.
C4BPA	722	broad.mit.edu	36	1	205383820	205383820	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A01Y-01	TCGA-AG-A01Y-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000715	exon11	c.G1479T	p.R493S	.	.	.
AIDA	64853	broad.mit.edu	36	1	220913287	220913287	+	Silent	SNP	A	G	G	novel		TCGA-AG-A01Y-01	TCGA-AG-A01Y-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022831	exon8	c.T697C	p.L233L	.	.	.
AGT	183	broad.mit.edu	36	1	228908325	228908325	+	Silent	SNP	G	A	A	novel		TCGA-AG-A01Y-01	TCGA-AG-A01Y-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000029	exon3	c.C1101T	p.N367N	.	.	.
MTR	4548	broad.mit.edu	36	1	235115122	235115122	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A01Y-01	TCGA-AG-A01Y-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000254	exon26	c.G2755A	p.D919N	.	.	.
NCDN	23154	broad.mit.edu	36	1	35800667	35800667	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A01Y-01	TCGA-AG-A01Y-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001014841	exon4	c.C1180T	p.R394C	.	.	.
COL24A1	255631	broad.mit.edu	36	1	86199531	86199531	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-AG-A01Y-01	TCGA-AG-A01Y-01			T	-	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_152890	exon24	c.2551delA	p.I851fs	.	.	.
SAA2	6289	broad.mit.edu	36	11	18226049	18226049	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A01Y-01	TCGA-AG-A01Y-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001199744	exon2	c.T86G	p.F29C	.	.	.
DPF2	5977	broad.mit.edu	36	11	64875741	64875741	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AG-A01Y-01	TCGA-AG-A01Y-01	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_006268	exon11	c.T1111A	p.C371S	.	.	.
RRP8	23378	broad.mit.edu	36	11	6579171	6579171	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A01Y-01	TCGA-AG-A01Y-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_015324	exon3	c.G701A	p.R234Q	.	.	.
IGHMBP2	3508	broad.mit.edu	36	11	68463602	68463602	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A01Y-01	TCGA-AG-A01Y-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002180	exon15	c.C2809T	p.R937C	.	.	.
CCDC81	60494	broad.mit.edu	36	11	85803870	85803870	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A01Y-01	TCGA-AG-A01Y-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021827	exon12	c.G1288T	p.E430X	.	.	.
NEDD9	4739	broad.mit.edu	36	6	11299359	11299359	+	Silent	SNP	G	A	A	novel		TCGA-AG-A01Y-01	TCGA-AG-A01Y-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006403	exon5	c.C729T	p.F243F	.	.	.
AKAP7	9465	broad.mit.edu	36	6	131522932	131522932	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A01Y-01	TCGA-AG-A01Y-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016377	exon2	c.A126C	p.E42D	.	.	.
SYNJ2	8871	broad.mit.edu	36	6	158415710	158415710	+	Silent	SNP	G	A	A	novel		TCGA-AG-A01Y-01	TCGA-AG-A01Y-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003898	exon16	c.G2244A	p.K748K	.	.	.
MICB	4277	broad.mit.edu	36	6	31582075	31582075	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AG-A01Y-01	TCGA-AG-A01Y-01	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_005931	exon3	c.T502A	p.F168I	.	.	.
IL17A	3605	broad.mit.edu	36	6	52160493	52160493	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A01Y-01	TCGA-AG-A01Y-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002190	exon2	c.G161A	p.R54Q	.	.	.
FAM135A	57579	broad.mit.edu	36	6	71269170	71269170	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AG-A01Y-01	TCGA-AG-A01Y-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001162529	exon10	c.C984G	p.H328Q	.	.	.
UBB	7314	broad.mit.edu	36	17	16226334	16226334	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A01Y-01	TCGA-AG-A01Y-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018955	exon2	c.C388T	p.R130C	.	.	.
SREBF1	6720	broad.mit.edu	36	17	17661048	17661048	+	Silent	SNP	G	A	A	novel		TCGA-AG-A01Y-01	TCGA-AG-A01Y-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001005291	exon10	c.C1824T	p.P608P	.	.	.
CALCOCO2	10241	broad.mit.edu	36	17	44274163	44274163	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A01Y-01	TCGA-AG-A01Y-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_005831	exon2	c.A95G	p.Y32C	.	.	.
TP53	7157	broad.mit.edu	36	17	7517747	7517747	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A01Y-01	TCGA-AG-A01Y-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001126114	exon8	c.C916T	p.R306X	TP53,large_intestine,rectum,Substitution - Nonsense,0	.	.
CBX4	8535	broad.mit.edu	36	17	75423481	75423481	+	Silent	SNP	G	A	A	novel		TCGA-AG-A01Y-01	TCGA-AG-A01Y-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003655	exon5	c.C555T	p.C185C	.	.	.
BRWD1	54014	broad.mit.edu	36	21	39532346	39532346	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A01Y-01	TCGA-AG-A01Y-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_033656	exon22	c.A2505C	p.E835D	.	.	.
GPR139	124274	broad.mit.edu	36	16	19950634	19950634	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A01Y-01	TCGA-AG-A01Y-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001002911	exon2	c.C986T	p.P329L	.	.	.
BFSP2	8419	broad.mit.edu	36	3	134650069	134650069	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A01Y-01	TCGA-AG-A01Y-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003571	exon3	c.A619C	p.N207H	.	.	.
TMEM43	79188	broad.mit.edu	36	3	14155742	14155742	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-AG-A01Y-01	TCGA-AG-A01Y-01	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_024334	exon11	c.G944C	p.G315A	.	.	.
EIF4A2	1974	broad.mit.edu	36	3	187989624	187989624	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AG-A01Y-01	TCGA-AG-A01Y-01	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001967	exon11	c.C1096G	p.R366G	.	.	.
TBX3	6926	broad.mit.edu	36	12	113603213	113603213	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A01Y-01	TCGA-AG-A01Y-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005996	exon2	c.A511C	p.M171L	.	.	.
SRRM4	84530	broad.mit.edu	36	12	118067670	118067670	+	Silent	SNP	G	C	C	novel		TCGA-AG-A01Y-01	TCGA-AG-A01Y-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_194286	exon9	c.G873C	p.T291T	.	.	.
DNAH10	196385	broad.mit.edu	36	12	122855510	122855510	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AG-A01Y-01	TCGA-AG-A01Y-01	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_207437	exon17	c.T2603A	p.I868N	.	.	.
SLCO1C1	53919	broad.mit.edu	36	12	20761408	20761408	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A01Y-01	TCGA-AG-A01Y-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017435	exon7	c.T752C	p.V251A	.	.	.
NCKAP1L	3071	broad.mit.edu	36	12	53196297	53196297	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A01Y-01	TCGA-AG-A01Y-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001184976	exon10	c.A799C	p.K267Q	.	.	.
CS	1431	broad.mit.edu	36	12	54954891	54954891	+	Silent	SNP	A	G	G	novel		TCGA-AG-A01Y-01	TCGA-AG-A01Y-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004077	exon9	c.T957C	p.V319V	.	.	.
C15orf2	23742	broad.mit.edu	36	15	22473569	22473569	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A01Y-01	TCGA-AG-A01Y-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_018958	exon1	c.G1462A	p.V488I	.	.	.
MYO9A	4649	broad.mit.edu	36	15	70098434	70098434	+	Silent	SNP	C	T	T	novel		TCGA-AG-A01Y-01	TCGA-AG-A01Y-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006901	exon6	c.G1155A	p.P385P	.	.	.
STRA6	64220	broad.mit.edu	36	15	72270602	72270602	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-AG-A01Y-01	TCGA-AG-A01Y-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001199041	exon10	c.C869G	p.A290G	.	.	.
SEMA4B	10509	broad.mit.edu	36	15	88561830	88561830	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AG-A01Y-01	TCGA-AG-A01Y-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198925	exon2	c.T313A	p.Y105N	.	.	.
COL25A1	84570	broad.mit.edu	36	4	109992883	109992883	+	Silent	SNP	A	G	G	novel		TCGA-AG-A01Y-01	TCGA-AG-A01Y-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198721	exon25	c.T1347C	p.G449G	.	.	.
ALPK1	80216	broad.mit.edu	36	4	113573150	113573150	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A01Y-01	TCGA-AG-A01Y-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_025144	exon11	c.G2998A	p.G1000R	.	.	.
FAM114A1	92689	broad.mit.edu	36	4	38619020	38619020	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A01Y-01	TCGA-AG-A01Y-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138389	exon14	c.A1573G	p.S525G	.	.	.
STK32B	55351	broad.mit.edu	36	4	5520667	5520667	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A01Y-01	TCGA-AG-A01Y-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018401	exon11	c.C1075T	p.R359W	.	.	.
MAN2B2	23324	broad.mit.edu	36	4	6661750	6661750	+	Silent	SNP	G	A	A	novel		TCGA-AG-A01Y-01	TCGA-AG-A01Y-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015274	exon12	c.G1830A	p.T610T	.	.	.
SORCS2	57537	broad.mit.edu	36	4	7716985	7716985	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A01Y-01	TCGA-AG-A01Y-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_020777	exon7	c.C958T	p.R320W	.	.	.
FAM47C	442444	broad.mit.edu	36	X	36937290	36937290	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A01Y-01	TCGA-AG-A01Y-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001013736	exon1	c.C886T	p.R296W	.	.	.
POTEF	728378	broad.mit.edu	36	2	130582101	130582101	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A01Y-01	TCGA-AG-A01Y-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001099771	exon8	c.C1077A	p.D359E	.	.	.
FAM123C	205147	broad.mit.edu	36	2	131238101	131238101	+	Silent	SNP	C	T	T	novel		TCGA-AG-A01Y-01	TCGA-AG-A01Y-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001105195	exon2	c.C1986T	p.H662H	.	.	.
TTN	7273	broad.mit.edu	36	2	179290575	179290575	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A01Y-01	TCGA-AG-A01Y-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_133378	exon84	c.A21539G	p.Q7180R	.	.	.
ZNF385B	151126	broad.mit.edu	36	2	180056342	180056342	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A01Y-01	TCGA-AG-A01Y-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001113397	exon4	c.C344T	p.T115M	.	.	.
ALS2CR8	79800	broad.mit.edu	36	2	203534391	203534391	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A01Y-01	TCGA-AG-A01Y-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001104586	exon8	c.G829A	p.A277T	.	.	.
HADHB	3032	broad.mit.edu	36	2	26356428	26356428	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AG-A01Y-01	TCGA-AG-A01Y-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000183	exon10	c.C874G	p.L292V	.	.	.
LRRC8A	56262	broad.mit.edu	36	9	130718203	130718203	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A01Y-01	TCGA-AG-A01Y-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019594	exon4	c.C2165T	p.T722M	.	.	.
SETX	23064	broad.mit.edu	36	9	134194180	134194180	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A01Y-01	TCGA-AG-A01Y-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_015046	exon10	c.A2626G	p.I876V	.	.	.
C9orf129	445577	broad.mit.edu	36	9	95121255	95121255	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A01Y-01	TCGA-AG-A01Y-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001098808	exon4	c.C388T	p.R130C	.	.	.
KIAA0564	23078	broad.mit.edu	36	13	41363656	41363656	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A01Y-01	TCGA-AG-A01Y-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_015058	exon5	c.A551G	p.N184S	.	.	.
NEK5	341676	broad.mit.edu	36	13	51572004	51572004	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A01Y-01	TCGA-AG-A01Y-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_199289	exon12	c.T902C	p.I301T	.	.	.
DIS3	22894	broad.mit.edu	36	13	72234151	72234151	+	Silent	SNP	A	G	G	novel		TCGA-AG-A01Y-01	TCGA-AG-A01Y-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001128226	exon17	c.T2163C	p.A721A	.	.	.
FAM190B	54462	broad.mit.edu	36	10	86121987	86121987	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A01Y-01	TCGA-AG-A01Y-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_018999	exon2	c.C1199T	p.S400L	.	.	.
TNKS2	80351	broad.mit.edu	36	10	93600990	93600990	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A01Y-01	TCGA-AG-A01Y-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025235	exon21	c.A2732C	p.E911A	.	.	.
ZNF518A	9849	broad.mit.edu	36	10	97910272	97910272	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A01Y-01	TCGA-AG-A01Y-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_014803	exon6	c.G4203T	p.M1401I	.	.	.
APC	324	broad.mit.edu	36	5	112203070	112203070	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A01Y-01	TCGA-AG-A01Y-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001127511	exon14	c.C3826T	p.Q1276X	APC,large_intestine,right,Substitution - Nonsense,0	.	.
HSPA4	3308	broad.mit.edu	36	5	132440383	132440383	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AG-A01Y-01	TCGA-AG-A01Y-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002154	exon7	c.C802G	p.Q268E	.	.	.
PCDHB2	56133	broad.mit.edu	36	5	140456184	140456184	+	Silent	SNP	G	A	A	rs17844656	unknown	TCGA-AG-A01Y-01	TCGA-AG-A01Y-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018936	exon1	c.G1626A	p.A542A	.	.	.
KIF4B	285643	broad.mit.edu	36	5	154376072	154376072	+	Silent	SNP	T	C	C	novel		TCGA-AG-A01Y-01	TCGA-AG-A01Y-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001099293	exon1	c.T2460C	p.I820I	.	.	.
ZNF622	90441	broad.mit.edu	36	5	16516691	16516691	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A01Y-01	TCGA-AG-A01Y-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033414	exon2	c.C786A	p.S262R	.	.	.
NSUN2	54888	broad.mit.edu	36	5	6678682	6678682	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A01Y-01	TCGA-AG-A01Y-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_017755	exon4	c.G460A	p.E154K	.	.	.
CMYA5	202333	broad.mit.edu	36	5	79061321	79061321	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A01Y-01	TCGA-AG-A01Y-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_153610	exon2	c.T977C	p.I326T	.	.	.
