Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
BAT2L2	23215	broad.mit.edu	37	1	171553162	171553162	+	Missense_Mutation	SNP	C	T	T			TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	g.chr1:171553162C>T	uc010pmg.1	+	29	7737	c.7471C>T	c.(7471-7473)CAC>TAC	p.H2491Y	BAT2L2_uc010pmh.1_Missense_Mutation_p.H1403Y|BAT2L2_uc010pmi.1_Missense_Mutation_p.H328Y|BAT2L2_uc010pmj.1_Missense_Mutation_p.H18Y	NM_015172	NP_055987	Q9Y520	PRC2C_HUMAN	HBxAg transactivated protein 2	2491	Gln-rich.						protein C-terminus binding				0						TACTGCTATTCACAACTTTCC	0.408000													65	123					0	0	0.048971	0	0
GYLTL1B	120071	broad.mit.edu	37	11	45948105	45948105	+	Missense_Mutation	SNP	A	C	C			TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	g.chr11:45948105A>C	uc001nbv.1	+	9	1232	c.1121A>C	c.(1120-1122)GAG>GCG	p.E374A	GYLTL1B_uc001nbw.1_Missense_Mutation_p.E343A|GYLTL1B_uc001nbx.1_Missense_Mutation_p.E374A|GYLTL1B_uc001nby.1_Missense_Mutation_p.E57A|GYLTL1B_uc001nbz.1_5'Flank	NM_152312	NP_689525	Q8N3Y3	LARG2_HUMAN	glycosyltransferase-like 1B	374	Lumenal (Potential).				muscle cell homeostasis	Golgi membrane|integral to membrane	transferase activity, transferring glycosyl groups			ovary(2)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(35;0.226)		CTGCGGAGAGAGCTCTTTGTG	0.567000													28	53					0	0	0.037714	0	0
CORO1B	57175	broad.mit.edu	37	11	67206237	67206237	+	Missense_Mutation	SNP	G	C	C			TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	g.chr11:67206237G>C	uc001olj.1	-	9	1285	c.1249C>G	c.(1249-1251)CCC>GCC	p.P417A	PTPRCAP_uc001oli.1_5'Flank|CORO1B_uc009yrs.1_RNA|CORO1B_uc001olk.1_Missense_Mutation_p.P417A|CORO1B_uc009yrt.1_RNA|CORO1B_uc009yru.1_RNA|CORO1B_uc001oll.1_Missense_Mutation_p.P417A	NM_020441	NP_065174	Q9BR76	COR1B_HUMAN	coronin, actin binding protein, 1B	417					actin cytoskeleton organization	actin cytoskeleton|cytoplasm	actin filament binding			large_intestine(1)|ovary(1)	2			BRCA - Breast invasive adenocarcinoma(15;3.26e-06)			GCCATGGCGGGCCGGCTGTCA	0.701000													5	1					0	0	0.029380	0	0
OR8D1	283159	broad.mit.edu	37	11	124180427	124180427	+	Missense_Mutation	SNP	G	A	A			TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	g.chr11:124180427G>A	uc010sag.1	-	1	236	c.236C>T	c.(235-237)CCC>CTC	p.P79L		NM_001002917	NP_001002917	Q8WZ84	OR8D1_HUMAN	olfactory receptor, family 8, subfamily D,	79	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0528)		CAGCATTTTGGGAGTAATGAC	0.458000													7	60					0	0	0.029380	0	0
KLRB1	3820	broad.mit.edu	37	12	9754098	9754098	+	Silent	SNP	T	C	C			TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	g.chr12:9754098T>C	uc010sgt.1	-	2	245	c.183A>G	c.(181-183)TCA>TCG	p.S61S		NM_002258	NP_002249	Q12918	KLRB1_HUMAN	killer cell lectin-like receptor subfamily B,	61	Helical; Signal-anchor for type II membrane protein; (Potential).				cell surface receptor linked signaling pathway	integral to membrane|plasma membrane	sugar binding|transmembrane receptor activity				0						CCCACTTACCTGAAACACTCA	0.368000													3	50					0	0	0.004672	0	0
LDHB	3945	broad.mit.edu	37	12	21788543	21788543	+	Missense_Mutation	SNP	T	C	C			TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	g.chr12:21788543T>C	uc001rfc.2	-	7	956	c.938A>G	c.(937-939)GAG>GGG	p.E313G	LDHB_uc001rfd.2_Missense_Mutation_p.E313G|LDHB_uc001rfe.2_Missense_Mutation_p.E313G	NM_002300	NP_002291	P07195	LDHB_HUMAN	L-lactate dehydrogenase B	313					glycolysis|pyruvate metabolic process	cytosol	L-lactate dehydrogenase activity			breast(2)|ovary(1)	3					NADH(DB00157)	CTGAGCAACCTCATCATCCTT	0.458000													4	245					0	0	0.014758	0	0
CPNE6	9362	broad.mit.edu	37	14	24544466	24544466	+	Missense_Mutation	SNP	C	A	A			TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	g.chr14:24544466C>A	uc001wll.2	+	8	857	c.758C>A	c.(757-759)ACG>AAG	p.T253K	CPNE6_uc010tnv.1_Missense_Mutation_p.T308K|CPNE6_uc001wlm.2_Missense_Mutation_p.T78K|CPNE6_uc001wln.2_5'Flank	NM_006032	NP_006023	O95741	CPNE6_HUMAN	copine 6	253					lipid metabolic process|nervous system development|synaptic transmission|vesicle-mediated transport		calcium ion binding|transporter activity			skin(2)|ovary(1)	3				GBM - Glioblastoma multiforme(265;0.0184)		CAGGAAGGGACGGCAAACCCT	0.567000													106	128					6.00573e-27	9.19627e-27	0.048971	1	0
NPAS3	64067	broad.mit.edu	37	14	34263109	34263109	+	Missense_Mutation	SNP	A	G	G			TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	g.chr14:34263109A>G	uc001wru.2	+	10	1224	c.1160A>G	c.(1159-1161)AAT>AGT	p.N387S	NPAS3_uc001wrs.2_Missense_Mutation_p.N374S|NPAS3_uc001wrt.2_Missense_Mutation_p.N355S|NPAS3_uc001wrv.2_Missense_Mutation_p.N357S	NM_173159	NP_071406	Q8IXF0	NPAS3_HUMAN	neuronal PAS domain protein 3 isoform 3	387	PAS 2.|PAC.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|signal transducer activity			ovary(1)|skin(1)	2	Breast(36;0.0102)|Hepatocellular(127;0.133)		LUAD - Lung adenocarcinoma(48;0.00169)|Lung(238;0.00968)	GBM - Glioblastoma multiforme(1;1.31e-09)|all cancers(1;0.000112)|OV - Ovarian serous cystadenocarcinoma(311;0.115)		CCAGTGCTGAATAAGGGTCAG	0.368000													12	159					0	0	0.020292	0	0
C14orf142	84520	broad.mit.edu	37	14	93670051	93670051	+	Silent	SNP	C	T	T			TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	g.chr14:93670051C>T	uc001ybl.1	-	2	362	c.285G>A	c.(283-285)CGG>CGA	p.R95R		NM_032490	NP_115879	Q9BXV9	CN142_HUMAN	hypothetical protein LOC84520	95											0		all_cancers(154;0.00528)|Acute lymphoblastic leukemia(33;0.0497)|all_epithelial(191;0.125)|all_neural(303;0.13)		Epithelial(152;0.177)|all cancers(159;0.198)|COAD - Colon adenocarcinoma(157;0.203)		GTGTTTTTGGCCGTTTTGCAG	0.338000													4	167					0	0	0.021553	0	0
GCOM1	145781	broad.mit.edu	37	15	57922023	57922023	+	Missense_Mutation	SNP	C	G	G			TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	g.chr15:57922023C>G	uc002aei.2	+	6	768	c.649C>G	c.(649-651)CAA>GAA	p.Q217E	GCOM1_uc002aej.2_Missense_Mutation_p.Q217E|GCOM1_uc002aek.2_RNA|GCOM1_uc002ael.2_RNA|GCOM1_uc002aem.2_Missense_Mutation_p.Q217E|GCOM1_uc002aeq.2_RNA|GCOM1_uc002aen.2_RNA|GCOM1_uc010bfy.2_RNA|GCOM1_uc002aeo.2_Missense_Mutation_p.Q217E|GCOM1_uc002aep.2_RNA|GCOM1_uc010bfx.2_RNA	NM_001018100	NP_001018110	P0CAP1	GCOM1_HUMAN	GRINL1A upstream protein isoform 7	217	Potential.				intracellular signal transduction	extrinsic to internal side of plasma membrane|I band				ovary(1)	1						GGAGGTAGCGCAAGTTGAAAA	0.338000													4	93					0	0	0.014758	0	0
CDH8	1006	broad.mit.edu	37	16	61891030	61891031	+	Missense_Mutation	DNP	AG	CT	CT			TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	g.chr16:61891030_61891031AG>CT	uc002eog.1	-	4	911_912	c.659_660CT>AG	c.(658-660)CCT>CAG	p.P220Q	CDH8_uc002eoh.2_5'UTR	NM_001796	NP_001787	P55286	CADH8_HUMAN	cadherin 8, type 2 preproprotein	220	Extracellular (Potential).|Cadherin 2.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|skin(2)|breast(1)	9		Ovarian(137;0.0799)|Melanoma(118;0.16)		UCEC - Uterine corpus endometrioid carcinoma (183;0.196)|Epithelial(162;0.0155)|all cancers(182;0.0305)|OV - Ovarian serous cystadenocarcinoma(108;0.0499)|BRCA - Breast invasive adenocarcinoma(181;0.249)		AACCTGTTTCAGGCTCAATGGA	0.391000													29	58					0	0	0.004672	0	0
ZC3H18	124245	broad.mit.edu	37	16	88694029	88694029	+	Splice_Site	SNP	G	C	C			TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	g.chr16:88694029G>C	uc002fky.2	+	14	2309	c.2109_splice	c.e14-1	p.R703_splice	ZC3H18_uc010voz.1_Splice_Site_p.R727_splice|ZC3H18_uc010chw.2_Intron|ZC3H18_uc002fkz.2_5'UTR	NM_144604	NP_653205	Q86VM9	ZCH18_HUMAN	zinc finger CCCH-type containing 18							nucleus	nucleic acid binding|zinc ion binding			skin(1)	1				BRCA - Breast invasive adenocarcinoma(80;0.0542)		TGTGTGTCCAGGTCCCTGAGC	0.602000													4	156					0	0	0.009096	0	0
TBX4	9496	broad.mit.edu	37	17	59560359	59560359	+	Missense_Mutation	SNP	G	A	A			TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	g.chr17:59560359G>A	uc002izi.2	+	8	1165	c.1120G>A	c.(1120-1122)GAC>AAC	p.D374N	TBX4_uc010ddo.2_Missense_Mutation_p.D375N|TBX4_uc010woy.1_Missense_Mutation_p.D375N	NM_018488	NP_060958	P57082	TBX4_HUMAN	T-box 4	374					leg morphogenesis|skeletal system morphogenesis	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			skin(2)	2						CCCTCCCTACGACCAGCAAAT	0.597000													4	68					0	0	0.009096	0	0
ANKRD30B	374860	broad.mit.edu	37	18	14754902	14754902	+	Missense_Mutation	SNP	G	A	A			TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	g.chr18:14754902G>A	uc010dlo.2	+	4	695	c.515G>A	c.(514-516)AGC>AAC	p.S172N	ANKRD30B_uc010xak.1_RNA	NM_001145029	NP_001138501	Q9BXX2	AN30B_HUMAN	ankyrin repeat domain 30B	172	ANK 4.									ovary(1)|skin(1)	2						TTACAGGCTAGCCTCACACCC	0.308000													2	0					0	0	0.009096	0	0
FBXO27	126433	broad.mit.edu	37	19	39521937	39521937	+	Missense_Mutation	SNP	G	C	C			TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	g.chr19:39521937G>C	uc002okh.2	-	3	470	c.388C>G	c.(388-390)CAA>GAA	p.Q130E		NM_178820	NP_849142	Q8NI29	FBX27_HUMAN	F-box protein 27	130	FBA.				protein catabolic process	SCF ubiquitin ligase complex	glycoprotein binding			ovary(1)	1	all_cancers(60;3.79e-07)|all_lung(34;1.26e-07)|Lung NSC(34;1.46e-07)|all_epithelial(25;4.69e-07)|Ovarian(47;0.0454)		Lung(45;0.000419)|LUSC - Lung squamous cell carcinoma(53;0.000554)			CCACCGTGTTGCACCATCCAC	0.587000													6	54					0	0	0.043863	0	0
THSD7B	80731	broad.mit.edu	37	2	138400116	138400116	+	Silent	SNP	C	T	T			TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	g.chr2:138400116C>T	uc002tva.1	+	20	3771	c.3771C>T	c.(3769-3771)TGC>TGT	p.C1257C	THSD7B_uc010zbj.1_Intron	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		GACGGCCATGCCCCACAGAGC	0.507000													4	188					0	0	0.014758	0	0
TMEFF2	23671	broad.mit.edu	37	2	193056717	193056717	+	Splice_Site	SNP	T	C	C			TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	g.chr2:193056717T>C	uc002utc.2	-	2	567	c.173_splice	c.e2-1	p.G58_splice	TMEFF2_uc002utd.1_Splice_Site_p.G58_splice	NM_016192	NP_057276	Q9UIK5	TEFF2_HUMAN	transmembrane protein with EGF-like and two							extracellular region|integral to membrane				lung(2)|pancreas(1)|breast(1)|skin(1)	5			OV - Ovarian serous cystadenocarcinoma(117;0.0835)			CATCATAACCTCAAATTCAAA	0.333000													3	78					0	0	0.004672	0	0
TPTE	7179	broad.mit.edu	37	21	11014952	11014952	+	RNA	SNP	A	T	T			TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	g.chr21:11014952A>T	uc002yis.1	-	7		c.1494T>A						P56180	TPTE_HUMAN	Homo sapiens putative tyrosine phosphatase mRNA, complete cds.						signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		CACATTGTCTACATTGCAGAA	0.333000													3	70					0	0	0.004672	0	0
FBLN1	2192	broad.mit.edu	37	22	45929662	45929662	+	Missense_Mutation	SNP	G	A	A			TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	g.chr22:45929662G>A	uc003bgj.1	+	7	815	c.668G>A	c.(667-669)GGC>GAC	p.G223D	FBLN1_uc003bgg.1_Missense_Mutation_p.G223D|FBLN1_uc003bgh.2_Missense_Mutation_p.G223D|FBLN1_uc010gzz.2_Missense_Mutation_p.G261D|FBLN1_uc003bgi.1_Missense_Mutation_p.G223D	NM_006486	NP_006477	P23142	FBLN1_HUMAN	fibulin 1 isoform D	223	EGF-like 2; calcium-binding (Potential).				interspecies interaction between organisms	extracellular space|soluble fraction	calcium ion binding|extracellular matrix structural constituent|protein binding			ovary(1)|central_nervous_system(1)	2		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0182)		TGCATCACGGGCAGCCACAGC	0.567000													11	137					0	0	0.028581	0	0
CELSR1	9620	broad.mit.edu	37	22	46785299	46785299	+	Missense_Mutation	SNP	A	G	G			TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	g.chr22:46785299A>G	uc003bhw.1	-	18	6443	c.6443T>C	c.(6442-6444)CTC>CCC	p.L2148P	CELSR1_uc011arc.1_Missense_Mutation_p.L469P	NM_014246	NP_055061	Q9NYQ6	CELR1_HUMAN	cadherin EGF LAG seven-pass G-type receptor 1	2148	Extracellular (Potential).				central nervous system development|homophilic cell adhesion|neural tube closure|neuropeptide signaling pathway	integral to plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein dimerization activity			lung(4)|breast(4)|pancreas(2)|skin(1)	11		Ovarian(80;0.00142)|Breast(42;0.00296)|all_neural(38;0.0416)|Colorectal(5;0.0766)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00643)|BRCA - Breast invasive adenocarcinoma(115;0.171)		ATTGCCAAAGAGCGTGCCCGT	0.667000													5	80					0	0	0.014758	0	0
IL17RC	84818	broad.mit.edu	37	3	9970113	9970113	+	Silent	SNP	T	G	G			TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	g.chr3:9970113T>G	uc003bua.2	+	11	1451	c.1215T>G	c.(1213-1215)GGT>GGG	p.G405G	CIDEC_uc003bto.2_Intron|IL17RC_uc011ato.1_RNA|IL17RC_uc010hcs.2_Silent_p.G309G|IL17RC_uc003btz.2_Silent_p.G334G|IL17RC_uc011atp.1_Silent_p.G190G|IL17RC_uc003bud.2_5'UTR|IL17RC_uc003bub.2_Silent_p.G319G|IL17RC_uc010hct.2_Silent_p.G334G|IL17RC_uc010hcu.2_Silent_p.G334G|IL17RC_uc010hcv.2_Silent_p.G319G|IL17RC_uc011atq.1_Silent_p.G319G|IL17RC_uc003buc.2_5'UTR|IL17RC_uc003bue.2_5'Flank	NM_153461	NP_703191	Q8NAC3	I17RC_HUMAN	interleukin 17 receptor C isoform 1 precursor	405	Extracellular (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(1)|pancreas(1)	2						GGGCTCCGGGTGGGGACCCCT	0.682000													12	71					0	0	0.048971	0	0
PRRC1	133619	broad.mit.edu	37	5	126860252	126860252	+	Missense_Mutation	SNP	G	T	T			TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	g.chr5:126860252G>T	uc003kuk.2	+	3	313	c.133G>T	c.(133-135)GTA>TTA	p.V45L	PRRC1_uc003kuj.3_Missense_Mutation_p.V45L	NM_130809	NP_570721	Q96M27	PRRC1_HUMAN	proline-rich coiled-coil 1	45	Pro-rich.					Golgi apparatus					0		Prostate(80;0.165)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	OV - Ovarian serous cystadenocarcinoma(64;0.0851)|Epithelial(69;0.113)		TTCTCCAAATGTATCCTCCAT	0.443000													24	317					3.01185e-09	4.34061e-09	0.091800	1	0
BRD8	10902	broad.mit.edu	37	5	137506598	137506598	+	Silent	SNP	C	T	T			TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	g.chr5:137506598C>T	uc003lcf.1	-	6	418	c.363G>A	c.(361-363)CGG>CGA	p.R121R	BRD8_uc003lcc.1_RNA|BRD8_uc003lcg.2_Silent_p.R121R|BRD8_uc003lci.2_Silent_p.R121R|BRD8_uc003lch.2_5'UTR|BRD8_uc011cym.1_Silent_p.R105R|BRD8_uc010jer.1_Silent_p.R90R|BRD8_uc011cyn.1_Silent_p.R80R|BRD8_uc010jes.1_5'UTR	NM_139199	NP_631938	Q9H0E9	BRD8_HUMAN	bromodomain containing 8 isoform 2	121	Potential.				cell surface receptor linked signaling pathway|histone H2A acetylation|histone H4 acetylation|regulation of growth|regulation of transcription from RNA polymerase II promoter	mitochondrion|NuA4 histone acetyltransferase complex	sequence-specific DNA binding transcription factor activity|thyroid hormone receptor activity			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0109)			CTCTCTTTAGCCGTCTATAGG	0.398000													4	164					0	0	0.009096	0	0
PCDHA4	56144	broad.mit.edu	37	5	140187880	140187880	+	Missense_Mutation	SNP	G	A	A			TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	g.chr5:140187880G>A	uc003lhi.2	+	1	1209	c.1108G>A	c.(1108-1110)GCC>ACC	p.A370T	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhh.1_Missense_Mutation_p.A370T|PCDHA4_uc011daa.1_Missense_Mutation_p.A370T	NM_018907	NP_061730	Q9UN74	PCDA4_HUMAN	protocadherin alpha 4 isoform 1 precursor	370	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(4)|skin(2)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TACAGTCATCGCCCTGATCAG	0.493000													4	138					0	0	0.009096	0	0
KIAA0141	9812	broad.mit.edu	37	5	141304998	141304998	+	Missense_Mutation	SNP	C	T	T	rs148625091		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	g.chr5:141304998C>T	uc003lls.2	+	3	292	c.170C>T	c.(169-171)ACG>ATG	p.T57M	KIAA0141_uc003llt.2_Missense_Mutation_p.T57M	NM_001142603	NP_001136075	Q14154	DELE_HUMAN	hypothetical protein LOC9812 precursor	57					apoptosis|regulation of caspase activity	mitochondrion	protein binding			skin(1)	1		all_hematologic(541;0.118)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGCCCAGGCACGAGCGGGGGT	0.483000													5	150					0	0	0.021553	0	0
AMD1	262	broad.mit.edu	37	6	111208734	111208734	+	Missense_Mutation	SNP	A	G	G			TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	g.chr6:111208734A>G	uc003puk.1	+	2	459	c.137A>G	c.(136-138)GAT>GGT	p.D46G	AMD1_uc011eay.1_5'UTR|AMD1_uc011eaz.1_Intron|AMD1_uc011eba.1_Intron|AMD1_uc003pul.1_Intron	NM_001634	NP_001625	P17707	DCAM_HUMAN	adenosylmethionine decarboxylase 1 isoform 1	46					spermidine biosynthetic process|spermine biosynthetic process	cytosol	adenosylmethionine decarboxylase activity			upper_aerodigestive_tract(1)	1		all_cancers(87;3.83e-05)|Acute lymphoblastic leukemia(125;2.13e-07)|all_hematologic(75;5.28e-06)|all_epithelial(87;0.00225)|Colorectal(196;0.0209)		OV - Ovarian serous cystadenocarcinoma(136;0.0522)|Epithelial(106;0.111)|all cancers(137;0.143)	S-Adenosylmethionine(DB00118)	CTTTTGAAGGATGTGCAATGT	0.353000													41	202					0	0	0.045515	0	0
SNX13	23161	broad.mit.edu	37	7	17836512	17836512	+	Missense_Mutation	SNP	T	C	C			TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	g.chr7:17836512T>C	uc003stw.1	-	25	2810	c.2597A>G	c.(2596-2598)GAT>GGT	p.D866G	SNX13_uc003stv.2_Missense_Mutation_p.D855G|SNX13_uc010kuc.2_Missense_Mutation_p.D652G|SNX13_uc010kub.2_Missense_Mutation_p.D261G			Q9Y5W8	SNX13_HUMAN	SubName: Full=Putative uncharacterized protein SNX13; SubName: Full=Sorting nexin 13, isoform CRA_g;	866					cell communication|intracellular protein transport|negative regulation of signal transduction|positive regulation of GTPase activity	early endosome membrane	phosphatidylinositol binding|signal transducer activity			central_nervous_system(2)|kidney(1)	3	Lung NSC(10;0.0261)|all_lung(11;0.0521)					AATACTTTTATCTCTGCATGG	0.318000													10	108					0	0	0.105934	0	0
MUC17	140453	broad.mit.edu	37	7	100676555	100676555	+	Missense_Mutation	SNP	C	T	T			TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	g.chr7:100676555C>T	uc003uxp.1	+	3	1911	c.1858C>T	c.(1858-1860)CCA>TCA	p.P620S	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	620	Extracellular (Potential).|8.|59 X approximate tandem repeats.|Ser-rich.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					TACCAGCATGCCAACCTCAAC	0.478000													7	481					0	0	0.038147	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	g.chr7:140453136A>T	uc003vwc.3	-	15	1860	c.1799T>A	c.(1798-1800)GTG>GAG	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368000	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				43	69					0	0	0.045515	0	0
ARSF	416	broad.mit.edu	37	X	3028196	3028196	+	Silent	SNP	C	T	T			TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	g.chrX:3028196C>T	uc004cre.1	+	10	1514	c.1293C>T	c.(1291-1293)CCC>CCT	p.P431P	ARSF_uc004crf.1_Silent_p.P431P	NM_004042	NP_004033	P54793	ARSF_HUMAN	arylsulfatase F precursor	431						extracellular region	arylsulfatase activity|metal ion binding			ovary(2)	2		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				ACCTCATGCCCTTGCTGCAGG	0.567000													8	213					0	0	0.047766	0	0
LUZP4	51213	broad.mit.edu	37	X	114541171	114541171	+	Silent	SNP	T	A	A			TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	g.chrX:114541171T>A	uc004eqa.2	+	4	778	c.744T>A	c.(742-744)ACT>ACA	p.T248T	LUZP4_uc004eqb.2_Silent_p.T166T	NM_016383	NP_057467	Q9P127	LUZP4_HUMAN	leucine zipper protein 4	248						nucleus				ovary(2)	2						TCATAGCCACTCAGAGAGATC	0.478000													6	147					0	0	0.029380	0	0
ARHGAP29	9411	broad.mit.edu	37	1	94639430	94639431	+	Frame_Shift_Ins	INS	-	A	A			TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	g.chr1:94639430_94639431insA	uc001dqj.3	-	23	4149_4150	c.3780_3781insT	c.(3778-3783)TTTGTGfs	p.F1260fs	ARHGAP29_uc009wdq.1_Intron	NM_004815	NP_004806	Q52LW3	RHG29_HUMAN	PTPL1-associated RhoGAP 1	1260_1261	Interaction with PTPN13/PTPL1.				Rho protein signal transduction	cytosol	metal ion binding|Rho GTPase activator activity			breast(4)|skin(3)|lung(2)|upper_aerodigestive_tract(1)|ovary(1)	11		all_lung(203;0.000732)|Lung NSC(277;0.00328)		all cancers(265;0.0187)|Epithelial(280;0.159)		CATCCCTACACAAATTGTGGAA	0.401													18	329	---	---	---	---					
C10orf26	54838	broad.mit.edu	37	10	104503830	104503830	+	Frame_Shift_Del	DEL	T	-	-			TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	g.chr10:104503830delT	uc001kwf.3	+	1	104	c.20delT	c.(19-21)CTGfs	p.L7fs	C10orf26_uc009xxg.1_RNA	NM_001083913	NP_001077382	Q9NX94	OPA1L_HUMAN	hypothetical protein LOC54838 isoform 1	Error:Variant_position_missing_in_Q9NX94_after_alignment						integral to membrane				central_nervous_system(1)	1		Colorectal(252;0.122)|all_hematologic(284;0.152)		Epithelial(162;6.14e-09)|all cancers(201;1.66e-07)|BRCA - Breast invasive adenocarcinoma(275;0.224)		agaaggCTCCTGGGTGGCATG	0.368													2	4	---	---	---	---					
ZMYND15	84225	broad.mit.edu	37	17	4645266	4645266	+	Frame_Shift_Del	DEL	G	-	-			TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	g.chr17:4645266delG	uc002fyt.2	+	4	923	c.884delG	c.(883-885)CGGfs	p.R295fs	CXCL16_uc002fyr.3_5'Flank|CXCL16_uc002fys.3_5'Flank|ZMYND15_uc002fyv.2_Frame_Shift_Del_p.R295fs|ZMYND15_uc002fyu.2_Frame_Shift_Del_p.R295fs	NM_032265	NP_115641	Q9H091	ZMY15_HUMAN	zinc finger, MYND-type containing 15 isoform 2	295							zinc ion binding				0						ACCCCAATGCGGACATGGGGT	0.577													83	141	---	---	---	---					
