Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU
AHNAK2	113146	genome.wustl.edu	37	14	105409390	105409390	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	105409390	105409390	A	-	DEL	AHNAK2	NM_138420	human	genbank	57_37b	-1	validated	frame_shift_del	c.12398	p.F4133fs	0.988	NULL	superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,HMMPfam_Involucrin	(deletion:cds_exon[105404400,105421136])	no_errors
AHNAK2	113146	genome.wustl.edu	37	14	105409649	105409650	+	Frame_Shift_Ins	INS	-	-	TT	novel	unknown	TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	105409649	105409650	-	TT	INS	AHNAK2	NM_138420	human	genbank	57_37b	-1	validated	frame_shift_ins	c.12139_12138	p.L4046fs	0.000:0.000	NULL	HMMPfam_Involucrin,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like	-	no_errors
ALG1L	200810	genome.wustl.edu	37	3	125648283	125648283	+	Missense_Mutation	SNP	A	A	G	rs3811679	byCluster;byFrequency;by1000genomes	TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	125648283	125648283	A	G	SNP	ALG1L	NM_001015050	human	genbank	57_37b	-1	provisional	missense	c.476	p.I159T	0.011	NULL	NULL	-	
ALG1L	200810	genome.wustl.edu	37	3	125648343	125648343	+	Missense_Mutation	SNP	G	G	A	rs3187711	byCluster;byFrequency	TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	125648343	125648343	G	A	SNP	ALG1L	NM_001015050	human	genbank	57_37b	-1	provisional	missense	c.416	p.S139L	0.139	NULL	NULL	-	
ANKRD34A	284615	genome.wustl.edu	37	1	145473902	145473902	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	145473902	145473902	G	T	SNP	ANKRD34A	NM_001039888	human	genbank	57_37b	+1	validated	missense	c.574	p.A192S	0.996	NULL	HMMSmart_SM00248,HMMPfam_Ank,superfamily_Ankyrin repeat	-	no_errors
ARL6IP6	151188	genome.wustl.edu	37	2	153616311	153616311	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	153616311	153616311	A	C	SNP	ARL6IP6	NM_152522	human	genbank	57_37b	+1	validated	missense	c.638	p.N213T	1.000	NULL	NULL	-	no_errors
BMP2	650	genome.wustl.edu	37	20	6759416	6759416	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	6759416	6759416	C	T	SNP	BMP2	NM_001200	human	genbank	57_37b	+1	reviewed	missense	c.871	p.R291C	1.000	superfamily_SSF57501	HMMPfam_TGFb_propeptide,superfamily_SSF57501,HMMPfam_TGF_beta,HMMSmart_TGFB,PatternScan_TGF_BETA_1	-	no_errors
C15orf51	196968	genome.wustl.edu	37	15	100340308	100340308	+	Silent	SNP	G	G	C	rs4965538	by2Hit2Allele	TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	100340308	100340308	G	C	SNP	C15orf51	ENST00000423248	human	ensembl	57_37b	-1	known	silent	c.321	p.T107	0.936	NULL	NULL	-	
CSF2RA	1438	genome.wustl.edu	37	X	1428407	1428407	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	1428407	1428407	C	T	SNP	CSF2RA	NM_172246	human	genbank	57_37b	+1	reviewed	silent	c.1059	p.S353	0.001	NULL	superfamily_Fibronectin type III,HMMPfam_Haemat_rec_S_F2,PatternScan_HEMATOPO_REC_S_F2	-	no_errors
CXCR1	0	genome.wustl.edu	37	2	219029024	219029024	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	219029024	219029024	A	G	SNP	CXCR1	NM_000634	human	genbank	57_37b	-1	reviewed	missense	c.911	p.I304T	1.000	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
DLX1	1745	genome.wustl.edu	37	2	172951598	172951598	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	172951598	172951598	G	A	SNP	DLX1	ENST00000409492	human	ensembl	57_37b	+1	known	missense	c.530	p.R177H	0.591	superfamily_Homeodomain_like,HMMSmart_HOX	superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox	-	no_errors
ENSG00000212024	0	genome.wustl.edu	37	7	29720393	29720395	+	RNA	DEL	ACA	ACA	-	novel	unknown	TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	ACA	ACA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	29720393	29720395	ACA	-	DEL	ENSG00000212024	ENST00000390735	human	ensembl	57_37b	-1	novel	rna	NULL	NULL	0.268:0.263:0.257	-	-	(deletion:rna[29720349,29720445])	no_errors
ENSG00000218327	0	genome.wustl.edu	37	1	227085155	227085155	+	Missense_Mutation	SNP	G	A	A	rs11802358	byCluster;byFrequency;byHapMap;by1000genomes	TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	227085155	227085155	G	A	SNP	ENSG00000218327	ENST00000407840	human	ensembl	57_37b	+1	known	missense	c.1	p.V1M	0.002	NULL	NULL	-	
ENSG00000246015	0	genome.wustl.edu	37	19	52894445	52894445	+	RNA	SNP	G	G	A	rs324121	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	52894445	52894445	G	A	SNP	ENSG00000246015	ENST00000500322	human	ensembl	57_37b	-1	known	rna	NULL	NULL	0.157	-	-	-	
FAM48B1	170067	genome.wustl.edu	37	X	24382429	24382429	+	Missense_Mutation	SNP	C	C	G	rs113091397	unknown	TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	24382429	24382429	C	G	SNP	FAM48B1	NM_001136234	human	genbank	57_37b	+1	inferred	missense	c.1552	p.P518A	0.001	NULL	NULL	-	
FAM57B	83723	genome.wustl.edu	37	16	30037078	30037078	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	30037078	30037078	G	A	SNP	FAM57B	NM_031478	human	genbank	57_37b	-1	validated	missense	c.509	p.P170L	1.000	HMMSmart_SM00724,HMMPfam_TRAM_LAG1_CLN8	HMMSmart_SM00724,HMMPfam_TRAM_LAG1_CLN8	-	no_errors
GATA6	2627	genome.wustl.edu	37	18	19761419	19761419	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	19761419	19761419	A	G	SNP	GATA6	NM_005257	human	genbank	57_37b	+1	validated	silent	c.1308	p.S436	0.464	NULL	HMMPfam_GATA-N,superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00401,PatternScan_GATA_ZN_FINGER_1,HMMPfam_GATA	-	no_errors
GRIA4	2893	genome.wustl.edu	37	11	105623906	105623906	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	105623906	105623906	C	T	SNP	GRIA4	NM_000829	human	genbank	57_37b	+1	reviewed	silent	c.447	p.Y149	0.984	superfamily_SSF53822,HMMPfam_ANF_receptor	superfamily_SSF53822,HMMPfam_ANF_receptor,HMMSmart_PBPe,superfamily_SSF53850,HMMPfam_Lig_chan-Glu_bd,HMMPfam_Lig_chan	-	no_errors
HDAC6	10013	genome.wustl.edu	37	X	48665033	48665033	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	48665033	48665033	C	A	SNP	HDAC6	NM_006044	human	genbank	57_37b	+1	reviewed	silent	c.552	p.A184	0.998	superfamily_SSF52768,HMMPfam_Hist_deacetyl	superfamily_SSF52768,HMMPfam_Hist_deacetyl,HMMSmart_ZnF_UBP,HMMPfam_zf-UBP	-	no_errors
HS1BP3	64342	genome.wustl.edu	37	2	20818883	20818883	+	Missense_Mutation	SNP	G	G	C	rs35579164	byCluster;byFrequency;by1000genomes	TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	20818883	20818883	G	C	SNP	HS1BP3	NM_022460	human	genbank	57_37b	-1	reviewed	missense	c.1043	p.P348R	0.002	NULL	superfamily_PX domain,HMMPfam_PX,HMMSmart_SM00312	-	
IL13RA2	3598	genome.wustl.edu	37	X	114242611	114242611	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	114242611	114242611	G	A	SNP	IL13RA2	NM_000640	human	genbank	57_37b	-1	reviewed	missense	c.881	p.T294I	0.000	superfamily_FN_III-like	superfamily_FN_III-like,HMMPfam_Haemat_rec_S_F2,PatternScan_HEMATOPO_REC_S_F2	-	no_errors
JAG1	182	genome.wustl.edu	37	20	10629222	10629222	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	10629222	10629222	G	A	SNP	JAG1	NM_000214	human	genbank	57_37b	-1	reviewed	missense	c.1544	p.T515I	1.000	HMMSmart_EGF_CA,superfamily_SSF57196,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_2	HMMPfam_MNNL,HMMPfam_DSL,HMMSmart_DSL,HMMSmart_EGF,PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_EGF_CA,HMMPfam_EGF,superfamily_SSF57196,PatternScan_EGF_CA,PatternScan_ASX_HYDROXYL,HMMSmart_VWC	-	no_errors
LOC100125556	0	genome.wustl.edu	37	3	125648080	125648080	+	RNA	SNP	G	G	A	rs3811677	byCluster;byFrequency;by1000genomes	TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	125648080	125648080	G	A	SNP	LOC100125556	NR_024250	human	genbank	57_37b	+1	provisional	rna	NULL	NULL	0.141	-	-	-	
LOC100125556	0	genome.wustl.edu	37	3	125648165	125648165	+	RNA	SNP	T	T	C	rs9826071	byCluster;byFrequency;by2Hit2Allele	TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	125648165	125648165	T	C	SNP	LOC100125556	NR_024250	human	genbank	57_37b	+1	provisional	rna	NULL	NULL	0.000	-	-	-	
LOC100289666	0	genome.wustl.edu	37	11	33096819	33096819	+	RNA	SNP	C	T	T	rs7107382	byCluster;by2Hit2Allele	TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	33096819	33096819	C	T	SNP	LOC100289666	XR_078433	human	genbank	57_37b	-1	model	rna	NULL	NULL	0.080	-	-	-	
LRRC41	10489	genome.wustl.edu	37	1	46745910	46745910	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	46745910	46745910	G	A	SNP	LRRC41	NM_006369	human	genbank	57_37b	-1	validated	silent	c.1974	p.D658	1.000	superfamily_RNI-like	superfamily_RNI-like,HMMSmart_SM00368	-	no_errors
MAP3K1	4214	genome.wustl.edu	37	5	56174909	56174909	+	Nonsense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	56174909	56174909	A	T	SNP	MAP3K1	NM_005921	human	genbank	57_37b	+1	validated	nonsense	c.2068	p.K690*	1.000	NULL	PatternScan_ZF_RING_1,HMMPfam_SWIM,superfamily_SSF57850,HMMSmart_RING,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
MAP3K1	4214	genome.wustl.edu	37	5	56180503	56180504	+	Frame_Shift_Del	DEL	AG	AG	-	novel	unknown	TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	AG	AG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	56180503	56180504	AG	-	DEL	MAP3K1	NM_005921	human	genbank	57_37b	+1	validated	frame_shift_del	c.3832_3833	p.R1278fs	1.000:1.000	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase	PatternScan_ZF_RING_1,HMMPfam_SWIM,superfamily_SSF57850,HMMSmart_RING,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	(deletion:cds_exon[56180491,56180653])	no_errors
MAP7D1	55700	genome.wustl.edu	37	1	36638146	36638146	+	Missense_Mutation	SNP	G	A	A	rs117018122	by1000genomes	TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	36638146	36638146	G	A	SNP	MAP7D1	NM_018067	human	genbank	57_37b	+1	provisional	missense	c.542	p.R181Q	1.000	NULL	HMMPfam_MAP7	-	
MYH8	4626	genome.wustl.edu	37	17	10304230	10304230	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	10304230	10304230	G	T	SNP	MYH8	NM_002472	human	genbank	57_37b	-1	reviewed	missense	c.3301	p.Q1101K	1.000	HMMPfam_Myosin_tail_1	HMMPfam_Myosin_N,superfamily_SSF52540,HMMSmart_MYSc,HMMPfam_Myosin_head,HMMSmart_IQ,HMMPfam_IQ,HMMPfam_Myosin_tail_1	-	no_errors
MYO18B	84700	genome.wustl.edu	37	22	26247456	26247456	+	Silent	SNP	G	G	A	rs5996988	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	26247456	26247456	G	A	SNP	MYO18B	NM_032608	human	genbank	57_37b	+1	reviewed	silent	c.3795	p.G1265	0.985	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head,HMMPfam_IQ	-	
NCKAP1	10787	genome.wustl.edu	37	2	183843631	183843631	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	183843631	183843631	A	T	SNP	NCKAP1	NM_205842	human	genbank	57_37b	-1	validated	missense	c.1372	p.C458S	1.000	HMMPfam_Nckap1	HMMPfam_Nckap1	-	no_errors
NSUN2	54888	genome.wustl.edu	37	5	6633015	6633016	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	6633015	6633016	-	T	INS	NSUN2	NM_017755	human	genbank	57_37b	-1	validated	frame_shift_ins	c.78_77	p.G27fs	0.162:0.121	NULL	PatternScan_NOL1_NOP2_SUN,superfamily_SSF53335,HMMPfam_Nol1_Nop2_Fmu	-	no_errors
OR52J3	119679	genome.wustl.edu	37	11	5068157	5068157	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	5068157	5068157	C	T	SNP	OR52J3	NM_001001916	human	genbank	57_37b	+1	validated	silent	c.402	p.Y134	0.815	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
OR6M1	390261	genome.wustl.edu	37	11	123676738	123676738	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	123676738	123676738	G	A	SNP	OR6M1	NM_001005325	human	genbank	57_37b	-1	provisional	missense	c.320	p.T107M	0.003	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	T			TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	178952085	178952085	A	T	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.3140	p.H1047L	1.000	HMMSmart_PI3Kc,superfamily_Kinase_like	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
PIK3CG	5294	genome.wustl.edu	37	7	106523570	106523570	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	106523570	106523570	A	T	SNP	PIK3CG	NM_002649	human	genbank	57_37b	+1	reviewed	missense	c.2722	p.N908Y	0.964	superfamily_Protein kinase-like (PK-like),HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146	superfamily_Ubiquitin-like,HMMPfam_PI3K_rbd,HMMSmart_SM00144,HMMSmart_SM00142,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PI3K_C2,superfamily_ARM repeat,HMMSmart_SM00145,HMMPfam_PI3Ka,superfamily_Protein kinase-like (PK-like),HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors
PPIB	5479	genome.wustl.edu	37	15	64449058	64449058	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	64449058	64449058	G	A	SNP	PPIB	NM_000942	human	genbank	57_37b	-1	reviewed	missense	c.394	p.H132Y	1.000	superfamily_CSA_PPIase,HMMPfam_Pro_isomerase	superfamily_CSA_PPIase,HMMPfam_Pro_isomerase,PatternScan_CSA_PPIASE_1	-	no_errors
PRICKLE4	29964	genome.wustl.edu	37	6	41752675	41752675	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	41752675	41752675	G	A	SNP	PRICKLE4	NM_013397	human	genbank	57_37b	+1	validated	silent	c.243	p.E81	0.987	HMMPfam_PET	HMMPfam_PET,HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_errors
SLAIN1	122060	genome.wustl.edu	37	13	78335020	78335020	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	78335020	78335020	C	T	SNP	SLAIN1	NM_001040153	human	genbank	57_37b	+1	validated	missense	c.749	p.S250F	0.998	NULL	NULL	-	no_errors
SQSTM1	8878	genome.wustl.edu	37	5	179250877	179250884	+	Frame_Shift_Del	DEL	GGACCACC	GGACCACC	-	novel	unknown	TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	GGACCACC	GGACCACC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	179250877	179250884	GGACCACC	-	DEL	SQSTM1	NM_003900	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.321_328	p.D108fs	0.998:1.000:0.990:0.360:1.000:1.000:0.998:1.000	superfamily_CAD  PB1 domains	HMMSmart_SM00666,HMMPfam_PB1,superfamily_CAD  PB1 domains,HMMSmart_SM00291,HMMPfam_ZZ,PatternScan_ZF_ZZ_1,superfamily_UBA-like,HMMSmart_SM00165	(deletion:cds_exon[179250858,179251087])	no_errors
TTC3	7267	genome.wustl.edu	37	21	38538542	38538542	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	38538542	38538542	G	T	SNP	TTC3	NM_001001894	human	genbank	57_37b	+1	validated	missense	c.4026	p.L1342F	0.955	superfamily_SSF48452,superfamily_Spectrin	HMMPfam_TPR_1,HMMSmart_TPR,superfamily_SSF48452,superfamily_Spectrin,superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4	-	no_errors
UBE4B	10277	genome.wustl.edu	37	1	10186920	10186920	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	10186920	10186920	T	C	SNP	UBE4B	NM_001105562	human	genbank	57_37b	+1	reviewed	silent	c.1623	p.F541	0.999	NULL	HMMPfam_Ufd2P_core,superfamily_RING/U-box,HMMPfam_U-box,HMMSmart_SM00504	-	no_errors
XIST	7503	genome.wustl.edu	37	X	73045755	73045755	+	RNA	SNP	C	C	A	novel	unknown	TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	73045755	73045755	C	A	SNP	XIST	NR_001564	human	genbank	57_37b	-1	reviewed	rna	NULL	NULL	0.001	-	-	-	no_errors
ZFP36L1	677	genome.wustl.edu	37	14	69257141	69257142	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	69257141	69257142	-	C	INS	ZFP36L1	NM_004926	human	genbank	57_37b	-1	reviewed	frame_shift_ins	c.126_125	p.T43fs	0.968:1.000	HMMPfam_Tis11B_N	HMMPfam_Tis11B_N,superfamily_SSF90229,HMMSmart_ZnF_C3H1,HMMPfam_zf-CCCH	-	no_errors
ZNF669	79862	genome.wustl.edu	37	1	247263686	247263686	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	247263686	247263686	C	G	SNP	ZNF669	NM_024804	human	genbank	57_37b	-1	validated	missense	c.1385	p.W462S	0.001	NULL	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2	-	no_errors
