Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU
C13orf34	79866	genome.wustl.edu	37	13	73321056	73321056	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AN-A03Y-01A-21W-A019-09	TCGA-AN-A03Y-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	73321056	73321056	A	T	SNP	C13orf34	NM_024808	human	genbank	57_37b	+1	validated	missense	c.1289	p.N430I	0.994	NULL	NULL	-	no_errors
C14orf21	161424	genome.wustl.edu	37	14	24774208	24774208	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AN-A03Y-01A-21W-A019-09	TCGA-AN-A03Y-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	24774208	24774208	G	A	SNP	C14orf21	NM_174913	human	genbank	57_37b	+1	provisional	silent	c.1818	p.L606	0.975	superfamily_ARM-type_fold	superfamily_ARM-type_fold,HMMPfam_PUF,HMMSmart_Pumilio	-	no_errors
CALCR	799	genome.wustl.edu	37	7	93065277	93065278	+	Frame_Shift_Del	DEL	AG	AG	-	novel	unknown	TCGA-AN-A03Y-01A-21W-A019-09	TCGA-AN-A03Y-10A-01W-A021-09	AG	AG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	93065277	93065278	AG	-	DEL	CALCR	NM_001742	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.1136_1135	p.L379fs	1.000:0.998	superfamily_SSF81321,HMMPfam_7tm_2	superfamily_SSF111418,superfamily_SSF81321,HMMSmart_HormR,HMMPfam_HRM,PatternScan_G_PROTEIN_RECEP_F2_1,HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2	(deletion:cds_exon[93065264,93065482])	no_errors
CDH1	999	genome.wustl.edu	37	16	68835596	68835596	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A03Y-01A-21W-A019-09	TCGA-AN-A03Y-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	68835596	68835596	C	T	SNP	CDH1	NM_004360	human	genbank	57_37b	+1	reviewed	nonsense	c.187	p.R63*	0.175	superfamily_Cadherin-like,HMMPfam_Cadherin_pro	superfamily_Cadherin-like,HMMPfam_Cadherin_pro,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_C	-	no_errors
COL4A1	1282	genome.wustl.edu	37	13	110864808	110864808	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A03Y-01A-21W-A019-09	TCGA-AN-A03Y-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	110864808	110864808	C	T	SNP	COL4A1	NM_001845	human	genbank	57_37b	-1	reviewed	missense	c.343	p.G115S	1.000	HMMPfam_Collagen	HMMPfam_Collagen,superfamily_C-type lectin-like,HMMPfam_C4,HMMSmart_SM00111	-	no_errors
COPG2	26958	genome.wustl.edu	37	7	130148507	130148507	+	Silent	SNP	G	G	A	rs2072575	byCluster;byFrequency;bySubmitter;by1000genomes	TCGA-AN-A03Y-01A-21W-A019-09	TCGA-AN-A03Y-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	130148507	130148507	G	A	SNP	COPG2	NM_012133	human	genbank	57_37b	-1	validated	silent	c.861	p.L287	0.174	NULL	superfamily_ARM repeat,HMMPfam_Adaptin_N	-	
CSPG4	1464	genome.wustl.edu	37	15	75970186	75970186	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AN-A03Y-01A-21W-A019-09	TCGA-AN-A03Y-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	75970186	75970186	G	A	SNP	CSPG4	NM_001897	human	genbank	57_37b	-1	reviewed	silent	c.4992	p.P1664	0.000	NULL	superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2,PatternScan_ATPASE_ALPHA_BETA	-	no_errors
CST2	1470	genome.wustl.edu	37	20	23807084	23807084	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A03Y-01A-21W-A019-09	TCGA-AN-A03Y-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	23807084	23807084	G	A	SNP	CST2	NM_001322	human	genbank	57_37b	-1	reviewed	nonsense	c.214	p.R72*	0.007	HMMSmart_CY,HMMPfam_Cystatin,superfamily_SSF54403	HMMSmart_CY,HMMPfam_Cystatin,superfamily_SSF54403,PatternScan_CYSTATIN	-	no_errors
DEPDC7	91614	genome.wustl.edu	37	11	33054005	33054005	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AN-A03Y-01A-21W-A019-09	TCGA-AN-A03Y-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	33054005	33054005	A	C	SNP	DEPDC7	NM_001077242	human	genbank	57_37b	+1	validated	missense	c.1118	p.E373A	1.000	NULL	"superfamily_""Winged helix"" DNA-binding domain,HMMPfam_DEP,HMMSmart_SM00049"	-	no_errors
ENSG00000145832	0	genome.wustl.edu	37	5	135207426	135207426	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A03Y-01A-21W-A019-09	TCGA-AN-A03Y-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	135207426	135207426	G	A	SNP	ENSG00000145832	ENST00000274513	human	ensembl	57_37b	+1	known	nonsense	c.698	p.W233*	0.006	NULL	HMMPfam_Mito_carr,superfamily_Mitoch_carrier	-	no_errors
ENSG00000245636	0	genome.wustl.edu	37	11	73388363	73388363	+	RNA	SNP	A	T	T	rs10898931	byCluster;byFrequency;by1000genomes	TCGA-AN-A03Y-01A-21W-A019-09	TCGA-AN-A03Y-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	73388363	73388363	A	T	SNP	ENSG00000245636	ENST00000499174	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.001	-	-	-	
EPPK1	83481	genome.wustl.edu	37	8	144941419	144941419	+	Silent	SNP	C	T	T	rs12681478	byCluster;byFrequency;byHapMap;by1000genomes	TCGA-AN-A03Y-01A-21W-A019-09	TCGA-AN-A03Y-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	144941419	144941419	C	T	SNP	EPPK1	NM_031308	human	genbank	57_37b	-1	validated	silent	c.6003	p.A2001	0.229	superfamily_Plakin repeat,HMMSmart_SM00250	HMMSmart_SM00250,superfamily_Plakin repeat,HMMPfam_Plectin	-	
FAM129C	199786	genome.wustl.edu	37	19	17651370	17651370	+	Silent	SNP	A	A	G	rs11878663	byCluster;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AN-A03Y-01A-21W-A019-09	TCGA-AN-A03Y-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	17651370	17651370	A	G	SNP	FAM129C	NM_173544	human	genbank	57_37b	+1	validated	silent	c.1242	p.S414	0.000	NULL	superfamily_PH domain-like,HMMSmart_SM00233	-	
FLJ45872	401478	genome.wustl.edu	37	8	138844038	138844038	+	RNA	SNP	A	G	G	rs34888436	byCluster;byFrequency;by1000genomes	TCGA-AN-A03Y-01A-21W-A019-09	TCGA-AN-A03Y-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	138844038	138844038	A	G	SNP	FLJ45872	XR_040309	human	genbank	57_37b	-1	model	rna	NULL	NULL	0.000	-	-	-	
GON4L	54856	genome.wustl.edu	37	1	155783515	155783515	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AN-A03Y-01A-21W-A019-09	TCGA-AN-A03Y-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	155783515	155783515	C	T	SNP	GON4L	NM_001037533	human	genbank	57_37b	-1	validated	silent	c.1362	p.P454	0.989	NULL	superfamily_PAH2 domain,HMMPfam_PAH,superfamily_Homeodomain-like	-	no_errors
HIF1A	3091	genome.wustl.edu	37	14	62187184	62187184	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AN-A03Y-01A-21W-A019-09	TCGA-AN-A03Y-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	62187184	62187184	T	C	SNP	HIF1A	NM_001530	human	genbank	57_37b	+1	validated	silent	c.120	p.L40	1.000	superfamily_HLH helix-loop-helix DNA-binding domain,HMMSmart_SM00353	superfamily_HLH helix-loop-helix DNA-binding domain,HMMSmart_SM00353,HMMSmart_SM00091,superfamily_PYP-like sensor domain (PAS domain),HMMPfam_PAS_3,HMMSmart_SM00086,HMMPfam_HIF-1a_CTAD	-	no_errors
HIST1H1T	3010	genome.wustl.edu	37	6	26107849	26107849	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A03Y-01A-21W-A019-09	TCGA-AN-A03Y-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	26107849	26107849	G	A	SNP	HIST1H1T	NM_005323	human	genbank	57_37b	-1	reviewed	missense	c.473	p.A158V	0.000	NULL	superfamily_SSF46785,HMMSmart_H15,HMMPfam_Linker_histone	-	no_errors
HIST1H3G	8355	genome.wustl.edu	37	6	26271482	26271482	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A03Y-01A-21W-A019-09	TCGA-AN-A03Y-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	26271482	26271482	G	A	SNP	HIST1H3G	NM_003534	human	genbank	57_37b	-1	reviewed	missense	c.131	p.P44L	1.000	superfamily_Histone-fold,HMMSmart_SM00428	superfamily_Histone-fold,PatternScan_HISTONE_H3_1,HMMSmart_SM00428,HMMPfam_Histone,PatternScan_HISTONE_H3_2	-	no_errors
HLTF	6596	genome.wustl.edu	37	3	148750058	148750058	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AN-A03Y-01A-21W-A019-09	TCGA-AN-A03Y-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	148750058	148750058	G	A	SNP	HLTF	NM_003071	human	genbank	57_37b	-1	reviewed	silent	c.2979	p.D993	0.956	NULL	HMMPfam_HIRAN,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_SNF2_N,superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMSmart_SM00490,HMMPfam_Helicase_C	-	no_errors
HRASLS	57110	genome.wustl.edu	37	3	192988399	192988399	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AN-A03Y-01A-21W-A019-09	TCGA-AN-A03Y-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	192988399	192988399	C	A	SNP	HRASLS	NM_020386	human	genbank	57_37b	+1	validated	silent	c.412	p.R138	1.000	HMMPfam_NC	HMMPfam_NC	-	no_errors
IQSEC3	440073	genome.wustl.edu	37	12	250443	250443	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AN-A03Y-01A-21W-A019-09	TCGA-AN-A03Y-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	250443	250443	C	T	SNP	IQSEC3	NM_015232	human	genbank	57_37b	+1	validated	silent	c.1236	p.D412	0.383	superfamily_Sec7,HMMPfam_Sec7,HMMSmart_Sec7	superfamily_Sec7,HMMPfam_Sec7,HMMSmart_Sec7,superfamily_SSF50729,HMMSmart_PH	-	no_errors
KIF7	374654	genome.wustl.edu	37	15	90185484	90185484	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A03Y-01A-21W-A019-09	TCGA-AN-A03Y-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	90185484	90185484	G	A	SNP	KIF7	NM_198525	human	genbank	57_37b	-1	validated	missense	c.2344	p.R782W	0.986	NULL	HMMSmart_KISc,superfamily_SSF52540,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1	-	no_errors
LGI1	9211	genome.wustl.edu	37	10	95557009	95557009	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A03Y-01A-21W-A019-09	TCGA-AN-A03Y-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	95557009	95557009	G	A	SNP	LGI1	NM_005097	human	genbank	57_37b	+1	reviewed	missense	c.1123	p.A375T	0.725	HMMPfam_EPTP	superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00082,HMMPfam_EPTP	-	no_errors
LOC100288997	0	genome.wustl.edu	37	15	91490894	91490894	+	Missense_Mutation	SNP	G	G	T	rs12915155	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-AN-A03Y-01A-21W-A019-09	TCGA-AN-A03Y-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	91490894	91490894	G	T	SNP	LOC100288997	XM_002343396	human	genbank	57_37b	-1	model	missense	c.1457	p.P486H	0.012	NULL	NULL	-	
LRRK1	79705	genome.wustl.edu	37	15	101605666	101605666	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AN-A03Y-01A-21W-A019-09	TCGA-AN-A03Y-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	101605666	101605666	A	G	SNP	LRRK1	NM_024652	human	genbank	57_37b	+1	validated	missense	c.5024	p.N1675S	1.000	NULL	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,superfamily_L domain-like,HMMSmart_SM00364,HMMSmart_SM00369,HMMPfam_LRR_1,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Miro,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMPfam_Pkinase,HMMSmart_SM00220	-	no_errors
MMP14	4323	genome.wustl.edu	37	14	23306048	23306048	+	Missense_Mutation	SNP	C	T	T	rs1042703	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AN-A03Y-01A-21W-A019-09	TCGA-AN-A03Y-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	23306048	23306048	C	T	SNP	MMP14	NM_004995	human	genbank	57_37b	+1	reviewed	missense	c.22	p.P8S	1.000	NULL	"superfamily_PGBD-like,HMMPfam_PG_binding_1,PatternScan_CYSTEINE_SWITCH,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMSmart_SM00235,HMMPfam_Peptidase_M10,PatternScan_ZINC_PROTEASE,superfamily_Hemopexin-like domain,HMMPfam_Hemopexin,HMMSmart_SM00120,PatternScan_HEMOPEXIN"	-	
MUC16	94025	genome.wustl.edu	37	19	9056732	9056732	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AN-A03Y-01A-21W-A019-09	TCGA-AN-A03Y-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	9056732	9056732	C	T	SNP	MUC16	NM_024690	human	genbank	57_37b	-1	validated	silent	c.30714	p.T10238	0.000	NULL	PatternScan_ATPASE_ALPHA_BETA,superfamily_SEA domain,HMMSmart_SM00200,HMMPfam_SEA	-	no_errors
NEDD4L	23327	genome.wustl.edu	37	18	56063421	56063421	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AN-A03Y-01A-21W-A019-09	TCGA-AN-A03Y-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	56063421	56063421	C	G	SNP	NEDD4L	NM_001144967	human	genbank	57_37b	+1	validated	missense	c.2848	p.P950A	1.000	superfamily_Hect E3 ligase catalytic domain,HMMSmart_SM00119,HMMPfam_HECT	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2,superfamily_WW domain,HMMSmart_SM00456,HMMPfam_WW,PatternScan_WW_DOMAIN_1,superfamily_Hect E3 ligase catalytic domain,HMMSmart_SM00119,HMMPfam_HECT	-	no_errors
OPN1LW	5956	genome.wustl.edu	37	X	153416303	153416303	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AN-A03Y-01A-21W-A019-09	TCGA-AN-A03Y-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	153416303	153416303	G	A	SNP	OPN1LW	NM_020061	human	genbank	57_37b	+1	reviewed	silent	c.288	p.A96	0.001	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,PatternScan_OPSIN	-	no_errors
PARP15	165631	genome.wustl.edu	37	3	122351055	122351055	+	Missense_Mutation	SNP	G	G	A	rs34383355	byCluster;byFrequency;by1000genomes	TCGA-AN-A03Y-01A-21W-A019-09	TCGA-AN-A03Y-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	122351055	122351055	G	A	SNP	PARP15	NM_001113523	human	genbank	57_37b	+1	validated	missense	c.1561	p.A521T	0.000	superfamily_ADP-ribosylation,HMMPfam_PARP	superfamily_Macro domain-like,HMMSmart_SM00506,HMMPfam_Macro,superfamily_ADP-ribosylation,HMMPfam_PARP	-	
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G			TCGA-AN-A03Y-01A-21W-A019-09	TCGA-AN-A03Y-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	178952085	178952085	A	G	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.3140	p.H1047R	1.000	superfamily_Kinase_like,HMMSmart_PI3Kc	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors
PLEC	0	genome.wustl.edu	37	8	145009036	145009036	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A03Y-01A-21W-A019-09	TCGA-AN-A03Y-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	145009036	145009036	C	T	SNP	PLEC	NM_201380	human	genbank	57_37b	-1	reviewed	missense	c.1298	p.R433Q	1.000	superfamily_Spectrin repeat,HMMSmart_SM00150	HMMPfam_S10_plectin,superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_SM00033,PatternScan_ACTININ_2,superfamily_Spectrin repeat,HMMSmart_SM00150,superfamily_Plakin repeat,HMMSmart_SM00250,HMMPfam_Plectin	-	no_errors
PREX2	80243	genome.wustl.edu	37	8	69012077	69012077	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AN-A03Y-01A-21W-A019-09	TCGA-AN-A03Y-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	69012077	69012077	A	C	SNP	PREX2	NM_024870	human	genbank	57_37b	+1	validated	missense	c.2714	p.K905T	1.000	NULL	"superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,PatternScan_DH_1,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_""Winged helix"" DNA-binding domain,HMMPfam_DEP,HMMSmart_SM00049,superfamily_PDZ domain-like,HMMSmart_SM00228"	-	no_errors
SBNO2	22904	genome.wustl.edu	37	19	1127720	1127720	+	Silent	SNP	G	G	A	rs2074916	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-AN-A03Y-01A-21W-A019-09	TCGA-AN-A03Y-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	1127720	1127720	G	A	SNP	SBNO2	NM_014963	human	genbank	57_37b	-1	validated	silent	c.324	p.S108	0.978	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases	-	
SLC18A3	6572	genome.wustl.edu	37	10	50820002	50820002	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A03Y-01A-21W-A019-09	TCGA-AN-A03Y-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	50820002	50820002	G	A	SNP	SLC18A3	NM_003055	human	genbank	57_37b	+1	reviewed	missense	c.1216	p.A406T	1.000	superfamily_MFS general substrate transporter,HMMPfam_MFS_1	superfamily_MFS general substrate transporter,HMMPfam_MFS_1	-	no_errors
ST3GAL6	10402	genome.wustl.edu	37	3	98501128	98501128	+	Missense_Mutation	SNP	A	A	G	rs3772101	byCluster;byFrequency;by1000genomes	TCGA-AN-A03Y-01A-21W-A019-09	TCGA-AN-A03Y-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	98501128	98501128	A	G	SNP	ST3GAL6	ENST00000468553	human	ensembl	57_37b	+1	known	missense	c.413	p.Q138R	0.988	NULL	NULL	-	
TLX1NB	0	genome.wustl.edu	37	10	102849480	102849480	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AN-A03Y-01A-21W-A019-09	TCGA-AN-A03Y-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	102849480	102849480	C	T	SNP	TLX1NB	NM_001085398	human	genbank	57_37b	-1	validated	silent	c.183	p.P61	0.013	NULL	NULL	-	no_errors
TMC5	79838	genome.wustl.edu	37	16	19498308	19498308	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AN-A03Y-01A-21W-A019-09	TCGA-AN-A03Y-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	19498308	19498308	T	A	SNP	TMC5	NM_001105248	human	genbank	57_37b	+1	validated	missense	c.2405	p.M802K	1.000	HMMPfam_TMC	HMMPfam_TMC	-	no_errors
TNFRSF21	27242	genome.wustl.edu	37	6	47253822	47253822	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AN-A03Y-01A-21W-A019-09	TCGA-AN-A03Y-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	47253822	47253822	C	T	SNP	TNFRSF21	NM_014452	human	genbank	57_37b	-1	reviewed	silent	c.606	p.P202	0.952	HMMSmart_TNFR	superfamily_SSF57586,HMMSmart_TNFR,PatternScan_TNFR_NGFR_1,HMMSmart_DEATH,superfamily_DEATH_like,HMMPfam_Death	-	no_errors
TPP2	7174	genome.wustl.edu	37	13	103309552	103309552	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A03Y-01A-21W-A019-09	TCGA-AN-A03Y-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	103309552	103309552	G	A	SNP	TPP2	NM_003291	human	genbank	57_37b	+1	reviewed	missense	c.3099	p.M1033I	1.000	NULL	PatternScan_SUBTILASE_ASP,superfamily_Pept_S8_S53,HMMPfam_Peptidase_S8,PatternScan_SUBTILASE_HIS,PatternScan_SUBTILASE_SER	-	no_errors
TRIM26	7726	genome.wustl.edu	37	6	30157808	30157808	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A03Y-01A-21W-A019-09	TCGA-AN-A03Y-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	30157808	30157808	G	A	SNP	TRIM26	NM_003449	human	genbank	57_37b	-1	validated	missense	c.770	p.T257M	1.000	NULL	superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,HMMPfam_zf-B_box,HMMSmart_SM00336,HMMSmart_SM00589,HMMPfam_SPRY,HMMSmart_SM00449	-	no_errors
UBC	7316	genome.wustl.edu	37	12	125396469	125396469	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AN-A03Y-01A-21W-A019-09	TCGA-AN-A03Y-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	125396469	125396469	T	G	SNP	UBC	NM_021009	human	genbank	57_37b	-1	validated	missense	c.1849	p.T617P	1.000	HMMSmart_SM00213,superfamily_Ubiquitin-like,HMMPfam_ubiquitin	HMMSmart_SM00213,superfamily_Ubiquitin-like,HMMPfam_ubiquitin,PatternScan_UBIQUITIN_1	-	no_errors
ZBED4	9889	genome.wustl.edu	37	22	50280507	50280507	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A03Y-01A-21W-A019-09	TCGA-AN-A03Y-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	50280507	50280507	C	T	SNP	ZBED4	NM_014838	human	genbank	57_37b	+1	validated	missense	c.3197	p.S1066L	1.000	NULL	HMMSmart_SM00614,HMMPfam_zf-BED,HMMPfam_hATC	-	no_errors
ZNF586	54807	genome.wustl.edu	37	19	58290700	58290701	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-AN-A03Y-01A-21W-A019-09	TCGA-AN-A03Y-10A-01W-A021-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	58290700	58290701	-	T	INS	ZNF586	NM_017652	human	genbank	57_37b	+1	validated	frame_shift_ins	c.745_746	p.I250fs	0.010:0.020	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMSmart_ZnF_C2H2,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
