Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU
AHI1	54806	genome.wustl.edu	37	6	135787470	135787470	+	Silent	SNP	A	A	T	novel	unknown	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	135787470	135787470	A	T	SNP	AHI1	NM_001134830	human	genbank	57_37b	-1	reviewed	silent	c.231	p.T77	0.069	NULL	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326	-	no_errors
AMACR	23600	genome.wustl.edu	37	5	33989557	33989557	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	33989557	33989557	A	G	SNP	AMACR	NM_014324	human	genbank	57_37b	-1	reviewed	missense	c.790	p.W264R	1.000	superfamily_CoA-transferase family III (CaiB/BaiF)	superfamily_CoA-transferase family III (CaiB/BaiF),PatternScan_ALDEHYDE_DEHYDR_GLU,HMMPfam_CoA_transf_3	-	no_errors
ANO9	338440	genome.wustl.edu	37	11	428132	428136	+	Frame_Shift_Del	DEL	GAAGA	GAAGA	-	novel	unknown	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	GAAGA	GAAGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	428132	428136	GAAGA	-	DEL	ANO9	NM_001012302	human	genbank	57_37b	-1	validated	frame_shift_del	c.1290_1286	p.F429fs	0.998:1.000:1.000:1.000:1.000	NULL	HMMPfam_DUF590	(deletion:cds_exon[428088,428199])	no_errors
ATG16L1	55054	genome.wustl.edu	37	2	234172686	234172686	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	234172686	234172686	A	T	SNP	ATG16L1	NM_030803	human	genbank	57_37b	+1	validated	missense	c.364	p.R122W	0.966	HMMPfam_ATG16,superfamily_WD40 repeat-like	HMMPfam_ATG16,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors
ATP2C2	9914	genome.wustl.edu	37	16	84449123	84449123	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	84449123	84449123	C	G	SNP	ATP2C2	NM_014861	human	genbank	57_37b	+1	validated	missense	c.550	p.R184G	0.736	superfamily_Calcium ATPase transmembrane domain M,HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A	superfamily_Calcium ATPase transmembrane domain M,HMMPfam_Cation_ATPase_N,HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A,superfamily_HAD-like,HMMPfam_Hydrolase,PatternScan_ATPASE_E1_E2,superfamily_Metal cation-transporting ATPase ATP-binding domain N,HMMPfam_Cation_ATPase_C	-	no_errors
ATXN7L1	222255	genome.wustl.edu	37	7	105283455	105283455	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	105283455	105283455	G	A	SNP	ATXN7L1	NM_020725	human	genbank	57_37b	-1	validated	missense	c.692	p.S231L	0.935	NULL	HMMPfam_SCA7	-	no_errors
BAI3	577	genome.wustl.edu	37	6	69349109	69349109	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	69349109	69349109	C	T	SNP	BAI3	NM_001704	human	genbank	57_37b	+1	reviewed	missense	c.542	p.S181L	0.996	NULL	superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMSmart_SM00008,HMMPfam_HRM,HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2	-	no_errors
BRCA1	672	genome.wustl.edu	37	17	41201181	41201181	+	Missense_Mutation	SNP	C	C	A	rs80357069	byCluster	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	41201181	41201181	C	A	SNP	BRCA1	NM_007294	human	genbank	57_37b	-1	reviewed	missense	c.5363	p.G1788V	1.000	HMMPfam_BRCT,HMMSmart_SM00292,superfamily_BRCT domain	superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMPfam_BRCT,HMMSmart_SM00292,superfamily_BRCT domain	-	
C17orf71	55181	genome.wustl.edu	37	17	57288018	57288018	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	57288018	57288018	C	A	SNP	C17orf71	NM_018149	human	genbank	57_37b	+1	validated	nonsense	c.606	p.Y202*	1.000	HMMPfam_DUF2146	HMMPfam_DUF2146	-	no_errors
C19orf2	8725	genome.wustl.edu	37	19	30505914	30505914	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	30505914	30505914	T	A	SNP	C19orf2	NM_003796	human	genbank	57_37b	+1	reviewed	missense	c.1546	p.S516T	0.309	NULL	superfamily_Prefoldin,HMMPfam_Prefoldin	-	no_errors
C19orf70	125988	genome.wustl.edu	37	19	5679407	5679407	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	5679407	5679407	G	C	SNP	C19orf70	NM_205767	human	genbank	57_37b	-1	validated	missense	c.208	p.L70V	1.000	NULL	NULL	-	no_errors
C1orf220	400798	genome.wustl.edu	37	1	178514978	178514978	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	178514978	178514978	C	G	SNP	C1orf220	ENST00000319387	human	ensembl	57_37b	+1	known	missense	c.364	p.L122V	0.000	NULL	NULL	-	no_errors
C6orf170	221322	genome.wustl.edu	37	6	121577341	121577341	+	Silent	SNP	C	C	G	novel	unknown	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	121577341	121577341	C	G	SNP	C6orf170	NM_152730	human	genbank	57_37b	-1	validated	silent	c.1824	p.V608	0.614	NULL	superfamily_Ypt/Rab-GAP domain of gyp1p	-	no_errors
CCDC112	153733	genome.wustl.edu	37	5	114603600	114603600	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	114603600	114603600	C	G	SNP	CCDC112	NM_001040440	human	genbank	57_37b	-1	validated	missense	c.1563	p.W521C	1.000	NULL	NULL	-	no_errors
CNKSR2	22866	genome.wustl.edu	37	X	21627269	21627269	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	21627269	21627269	T	G	SNP	CNKSR2	NM_014927	human	genbank	57_37b	+1	reviewed	missense	c.2226	p.H742Q	0.999	NULL	superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_1,HMMPfam_CRIC_ras_sig,superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,HMMPfam_DUF1170,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233	-	no_errors
CNKSR3	154043	genome.wustl.edu	37	6	154762480	154762480	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	154762480	154762480	G	A	SNP	CNKSR3	NM_173515	human	genbank	57_37b	-1	validated	silent	c.453	p.V151	0.000	HMMPfam_CRIC_ras_sig	superfamily_SAM_homology,HMMSmart_SAM,HMMPfam_SAM_1,HMMPfam_CRIC_ras_sig,HMMPfam_PDZ,superfamily_PDZ,HMMSmart_PDZ,HMMPfam_DUF1170	-	no_errors
CPSF1	29894	genome.wustl.edu	37	8	145625789	145625789	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	145625789	145625789	G	T	SNP	CPSF1	NM_013291	human	genbank	57_37b	-1	validated	missense	c.785	p.P262H	1.000	NULL	HMMPfam_CPSF_A	-	no_errors
CREBZF	58487	genome.wustl.edu	37	11	85375730	85375746	+	Frame_Shift_Del	DEL	CCAACTCTCCTTCGTCG	CCAACTCTCCTTCGTCG	-	novel	unknown	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	CCAACTCTCCTTCGTCG	CCAACTCTCCTTCGTCG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	85375730	85375746	CCAACTCTCCTTCGTCG	-	DEL	CREBZF	NM_001039618	human	genbank	57_37b	-1	validated	frame_shift_del	c.190_174	p.D59fs	0.806:0.389:0.005:0.001:0.122:0.203:0.206:0.123:0.090:0.195:0.239:0.270:0.788:0.901:0.925:0.932:0.906	NULL	PatternScan_BZIP_BASIC,HMMSmart_BRLZ	(deletion:cds_exon[85374855,85375919])	no_errors
CSNK1E	1454	genome.wustl.edu	37	22	38694802	38694802	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	38694802	38694802	T	A	SNP	CSNK1E	NM_001894	human	genbank	57_37b	-1	reviewed	missense	c.874	p.M292L	1.000	superfamily_Protein kinase-like (PK-like)	superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
DAND5	199699	genome.wustl.edu	37	19	13084353	13084353	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	13084353	13084353	G	C	SNP	DAND5	NM_152654	human	genbank	57_37b	+1	reviewed	missense	c.475	p.V159L	0.014	HMMPfam_DAN	HMMPfam_DAN	-	no_errors
DIXDC1	85458	genome.wustl.edu	37	11	111857608	111857608	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	111857608	111857608	G	T	SNP	DIXDC1	ENST00000440460	human	ensembl	57_37b	+1	known	missense	c.1019	p.S340I	1.000	NULL	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,HMMSmart_SM00033,HMMPfam_DIX,HMMSmart_SM00021	-	no_errors
DNAH3	55567	genome.wustl.edu	37	16	20944829	20944829	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	20944829	20944829	C	A	SNP	DNAH3	NM_017539	human	genbank	57_37b	-1	provisional	missense	c.11998	p.V4000L	1.000	HMMPfam_Dynein_heavy	HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA_5,superfamily_Prefoldin,HMMPfam_Dynein_heavy	-	no_errors
DNAJC9	23234	genome.wustl.edu	37	10	75005836	75005836	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	75005836	75005836	G	C	SNP	DNAJC9	NM_015190	human	genbank	57_37b	-1	provisional	missense	c.420	p.D140E	1.000	NULL	superfamily_Chaperone J-domain,HMMSmart_SM00271,HMMPfam_DnaJ,PatternScan_DNAJ_1	-	no_errors
DOCK6	57572	genome.wustl.edu	37	19	11348396	11348396	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	11348396	11348396	T	-	DEL	DOCK6	NM_020812	human	genbank	57_37b	-1	validated	frame_shift_del	c.1892	p.H631fs	1.000	NULL	HMMPfam_Ded_cyto	(deletion:cds_exon[11348317,11348455])	no_errors
DOPEY2	9980	genome.wustl.edu	37	21	37612131	37612131	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	37612131	37612131	G	A	SNP	DOPEY2	NM_005128	human	genbank	57_37b	+1	validated	nonsense	c.2945	p.W982*	1.000	NULL	HMMPfam_Dopey_N	-	no_errors
ENSG00000207310	0	genome.wustl.edu	37	3	119060770	119060770	+	RNA	SNP	C	T	T	rs76259733	byCluster;byFrequency;by1000genomes	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	119060770	119060770	C	T	SNP	ENSG00000207310	ENST00000384580	human	ensembl	57_37b	-1	novel	rna	NULL	NULL	0.019	-	-	-	
ENSG00000247116	0	genome.wustl.edu	37	15	85213948	85213948	+	RNA	SNP	A	A	T	novel	unknown	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	85213948	85213948	A	T	SNP	ENSG00000247116	ENST00000499340	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors
EPB41L3	23136	genome.wustl.edu	37	18	5397152	5397152	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	5397152	5397152	G	C	SNP	EPB41L3	NM_012307	human	genbank	57_37b	-1	provisional	missense	c.2746	p.Q916E	0.733	NULL	HMMSmart_SM00295,superfamily_Ubiquitin-like,HMMPfam_FERM_N,PatternScan_FERM_1,superfamily_Second domain of FERM,HMMPfam_FERM_M,PatternScan_FERM_2,superfamily_PH domain-like,HMMPfam_FERM_C,HMMPfam_FA,HMMPfam_SAB,HMMPfam_4_1_CTD	-	no_errors
ESYT3	83850	genome.wustl.edu	37	3	138183231	138183231	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	138183231	138183231	G	C	SNP	ESYT3	NM_031913	human	genbank	57_37b	+1	validated	missense	c.960	p.Q320H	0.803	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2	-	no_errors
F2	2147	genome.wustl.edu	37	11	46750993	46750993	+	Silent	SNP	A	A	T	novel	unknown	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	46750993	46750993	A	T	SNP	F2	NM_000506	human	genbank	57_37b	+1	reviewed	silent	c.1536	p.T512	0.000	superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin	HMMSmart_GLA,superfamily_VitK_dep_GLA,HMMPfam_Gla,PatternScan_GLA_1,HMMSmart_KR,HMMPfam_Kringle,superfamily_Kringle-like,PatternScan_KRINGLE_1,HMMPfam_Thrombin_light,superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	no_errors
FAM111B	374393	genome.wustl.edu	37	11	58893517	58893517	+	Silent	SNP	C	C	G	novel	unknown	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	58893517	58893517	C	G	SNP	FAM111B	NM_198947	human	genbank	57_37b	+1	validated	silent	c.1947	p.S649	0.248	superfamily_Trypsin-like serine proteases	superfamily_Trypsin-like serine proteases	-	no_errors
FLNC	2318	genome.wustl.edu	37	7	128496688	128496688	+	Silent	SNP	C	C	G	novel	unknown	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	128496688	128496688	C	G	SNP	FLNC	NM_001458	human	genbank	57_37b	+1	reviewed	silent	c.7368	p.V2456	1.000	HMMPfam_Filamin,superfamily_E set domains,HMMSmart_SM00557	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_SM00033,PatternScan_ACTININ_2,superfamily_E set domains,HMMPfam_Filamin,HMMSmart_SM00557	-	no_errors
GBP7	388646	genome.wustl.edu	37	1	89613451	89613451	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	89613451	89613451	C	A	SNP	GBP7	NM_207398	human	genbank	57_37b	-1	validated	missense	c.1164	p.E388D	0.020	HMMPfam_GBP_C,superfamily_Interferon-induced guanylate-binding protein 1 (GBP1) C-terminal domain	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_GBP,HMMPfam_GBP_C,superfamily_Interferon-induced guanylate-binding protein 1 (GBP1) C-terminal domain	-	no_errors
GGCX	2677	genome.wustl.edu	37	2	85777243	85777243	+	Silent	SNP	C	C	G	novel	unknown	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	85777243	85777243	C	G	SNP	GGCX	NM_000821	human	genbank	57_37b	-1	reviewed	silent	c.2091	p.L697	1.000	NULL	HMMSmart_HTTM,HMMPfam_VKG_Carbox,superfamily_RmlC_like_cupin	-	no_errors
GJA1	2697	genome.wustl.edu	37	6	121768943	121768943	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	121768943	121768943	A	G	SNP	GJA1	NM_000165	human	genbank	57_37b	+1	reviewed	missense	c.950	p.Q317R	1.000	NULL	HMMPfam_Connexin,HMMSmart_CNX,PatternScan_CONNEXINS_1,HMMPfam_Connexin_CCC,PatternScan_CONNEXINS_2,HMMPfam_Connexin43	-	no_errors
HOXB2	3212	genome.wustl.edu	37	17	46622059	46622059	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	46622059	46622059	G	A	SNP	HOXB2	NM_002145	human	genbank	57_37b	-1	reviewed	missense	c.215	p.A72V	1.000	NULL	PatternScan_ANTENNAPEDIA,superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	-	no_errors
HOXB3	3213	genome.wustl.edu	37	17	46629421	46629421	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	46629421	46629421	G	A	SNP	HOXB3	NM_002146	human	genbank	57_37b	-1	reviewed	missense	c.416	p.T139M	1.000	NULL	PatternScan_ANTENNAPEDIA,superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	-	no_errors
HSD3B2	3284	genome.wustl.edu	37	1	119964794	119964794	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	119964794	119964794	T	C	SNP	HSD3B2	NM_000198	human	genbank	57_37b	+1	reviewed	missense	c.670	p.Y224H	0.998	superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_3Beta_HSD	superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_3Beta_HSD	-	no_errors
IGFL2	147920	genome.wustl.edu	37	19	46663943	46663943	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	46663943	46663943	A	T	SNP	IGFL2	NM_001002915	human	genbank	57_37b	+1	validated	missense	c.179	p.E60V	0.009	NULL	NULL	-	no_errors
INMT	11185	genome.wustl.edu	37	7	30791789	30791789	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	30791789	30791789	G	A	SNP	INMT	NM_006774	human	genbank	57_37b	+1	reviewed	missense	c.23	p.G8D	0.000	HMMPfam_NNMT_PNMT_TEMT,superfamily_SSF53335	HMMPfam_NNMT_PNMT_TEMT,superfamily_SSF53335,PatternScan_NNMT_PNMT_TEMT	-	no_errors
ITGA10	8515	genome.wustl.edu	37	1	145527965	145527965	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	145527965	145527965	G	T	SNP	ITGA10	NM_003637	human	genbank	57_37b	+1	reviewed	missense	c.202	p.D68Y	0.913	superfamily_Integrin alpha N-terminal domain,HMMSmart_SM00191	superfamily_Integrin alpha N-terminal domain,HMMSmart_SM00191,superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,HMMPfam_FG-GAP,HMMPfam_Integrin_alpha2,superfamily_Integrin domains	-	no_errors
ITGAL	3683	genome.wustl.edu	37	16	30528336	30528336	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	30528336	30528336	C	A	SNP	ITGAL	NM_002209	human	genbank	57_37b	+1	reviewed	missense	c.2905	p.L969M	0.897	HMMPfam_Integrin_alpha2	superfamily_Integrin alpha N-terminal domain,HMMSmart_SM00191,superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,HMMPfam_FG-GAP,HMMPfam_Integrin_alpha2,superfamily_Integrin domains,PatternScan_INTEGRIN_ALPHA,HMMPfam_Integrin_alpha	-	no_errors
ITIH4	3700	genome.wustl.edu	37	3	52858309	52858309	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	52858309	52858309	C	-	DEL	ITIH4	NM_002218	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.1068	p.M356fs	0.994	HMMSmart_SM00327,superfamily_vWA-like,HMMPfam_VWA	HMMSmart_SM00609,HMMPfam_VIT,HMMSmart_SM00327,superfamily_vWA-like,HMMPfam_VWA,HMMPfam_ITI_HC_C	(deletion:cds_exon[52858206,52858331])	no_errors
ITLN2	142683	genome.wustl.edu	37	1	160924178	160924178	+	Silent	SNP	T	T	G	novel	unknown	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	160924178	160924178	T	G	SNP	ITLN2	NM_080878	human	genbank	57_37b	-1	validated	silent	c.78	p.A26	0.018	NULL	superfamily_Fibrinogen C-terminal domain-like	-	no_errors
KATNAL1	84056	genome.wustl.edu	37	13	30854326	30854326	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	30854326	30854326	A	T	SNP	KATNAL1	NM_001014380	human	genbank	57_37b	-1	validated	missense	c.197	p.V66D	1.000	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA,PatternScan_AAA,HMMPfam_Vps4_C	-	no_errors
KAZALD1	81621	genome.wustl.edu	37	10	102824287	102824287	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	102824287	102824287	G	T	SNP	KAZALD1	NM_030929	human	genbank	57_37b	+1	reviewed	silent	c.702	p.V234	1.000	HMMPfam_I-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408	superfamily_Kazal-type serine protease inhibitors,HMMSmart_SM00280,HMMPfam_Kazal_2,HMMPfam_I-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408	-	no_errors
KBTBD5	131377	genome.wustl.edu	37	3	42733450	42733450	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	42733450	42733450	G	T	SNP	KBTBD5	NM_152393	human	genbank	57_37b	+1	validated	missense	c.1831	p.V611L	1.000	NULL	superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,PatternScan_MGMT,HMMPfam_BACK,superfamily_Galactose oxidase central domain,HMMPfam_Kelch_1,HMMSmart_SM00612	-	no_errors
KCNH6	81033	genome.wustl.edu	37	17	61619620	61619620	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	61619620	61619620	G	T	SNP	KCNH6	NM_030779	human	genbank	57_37b	+1	reviewed	missense	c.1973	p.G658V	1.000	superfamily_cAMP-binding domain-like,HMMSmart_SM00100,HMMPfam_cNMP_binding	superfamily_PYP-like sensor domain (PAS domain),HMMPfam_PAS,superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,superfamily_cAMP-binding domain-like,HMMSmart_SM00100,HMMPfam_cNMP_binding	-	no_errors
KEL	3792	genome.wustl.edu	37	7	142658026	142658026	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	142658026	142658026	C	T	SNP	KEL	NM_000420	human	genbank	57_37b	-1	reviewed	missense	c.389	p.R130Q	0.045	"superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Peptidase_M13_N"	"superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Peptidase_M13_N,HMMPfam_Peptidase_M13"	-	no_errors
KIAA1529	57653	genome.wustl.edu	37	9	100136864	100136864	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	100136864	100136864	G	A	SNP	KIAA1529	NM_020893	human	genbank	57_37b	+1	predicted	missense	c.4607	p.R1536Q	0.982	NULL	NULL	-	no_errors
KIF5C	3800	genome.wustl.edu	37	2	149864578	149864578	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	149864578	149864578	G	C	SNP	KIF5C	ENST00000435030	human	ensembl	57_37b	+1	known	missense	c.2547	p.K849N	0.996	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00129,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1	-	no_errors
KL	9365	genome.wustl.edu	37	13	33635059	33635059	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	33635059	33635059	A	G	SNP	KL	NM_004795	human	genbank	57_37b	+1	reviewed	missense	c.1843	p.I615V	0.075	superfamily_(Trans)glycosidases	HMMPfam_Glyco_hydro_1,superfamily_(Trans)glycosidases,PatternScan_GLYCOSYL_HYDROL_F1_2	-	no_errors
LGI4	163175	genome.wustl.edu	37	19	35625006	35625006	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	35625006	35625006	G	A	SNP	LGI4	NM_139284	human	genbank	57_37b	-1	validated	missense	c.173	p.S58L	0.998	superfamily_L domain-like	superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00082,HMMPfam_LRRCT,HMMPfam_EPTP	-	no_errors
LGR4	55366	genome.wustl.edu	37	11	27406951	27406951	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	27406951	27406951	G	A	SNP	LGR4	NM_018490	human	genbank	57_37b	-1	validated	missense	c.466	p.R156W	0.995	superfamily_SSF52058,HMMPfam_LRR_1	PatternScan_G_PROTEIN_RECEP_F1_1,HMMPfam_LRRNT,HMMSmart_LRRNT,superfamily_SSF52058,HMMPfam_LRR_1,HMMSmart_LRR_TYP,superfamily_SSF52047,superfamily_SSF81321,HMMPfam_7tm_1	-	no_errors
LOC100287064	0	genome.wustl.edu	37	5	14653097	14653097	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	14653097	14653097	G	T	SNP	LOC100287064	XM_002342492	human	genbank	57_37b	+1	model	missense	c.70	p.D24Y	1.000	NULL	NULL	-	no_errors
LOXHD1	125336	genome.wustl.edu	37	18	44104856	44104856	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	44104856	44104856	C	T	SNP	LOXHD1	NM_144612	human	genbank	57_37b	-1	reviewed	missense	c.3721	p.A1241T	0.999	superfamily_Lipase_LipOase,HMMPfam_PLAT,HMMSmart_LH2	superfamily_Lipase_LipOase,HMMPfam_PLAT,HMMSmart_LH2	-	no_errors
MAGEA3	4102	genome.wustl.edu	37	X	151935749	151935749	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	151935749	151935749	C	T	SNP	MAGEA3	NM_005362	human	genbank	57_37b	-1	reviewed	missense	c.418	p.V140I	0.000	HMMPfam_MAGE	HMMPfam_MAGE	-	no_errors
MAML2	84441	genome.wustl.edu	37	11	95825480	95825480	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	95825480	95825480	G	A	SNP	MAML2	NM_032427	human	genbank	57_37b	-1	validated	missense	c.1715	p.P572L	1.000	NULL	HMMPfam_MamL-1	-	no_errors
MARCO	8685	genome.wustl.edu	37	2	119727689	119727689	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	119727689	119727689	G	A	SNP	MARCO	NM_006770	human	genbank	57_37b	+1	reviewed	splice_site	c.200-1	e3-1	1.000	-	-	-	no_errors
MGC26647	219557	genome.wustl.edu	37	7	88423585	88423586	+	Frame_Shift_Ins	INS	-	-	AACATTTATAAACATTT	novel	unknown	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	88423585	88423586	-	AACATTTATAAACATTT	INS	MGC26647	NM_152706	human	genbank	57_37b	-1	predicted	frame_shift_ins	c.672_671	p.M224fs	0.981:0.960	NULL	NULL	-	no_errors
MYH14	79784	genome.wustl.edu	37	19	50771486	50771486	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	50771486	50771486	G	-	DEL	MYH14	NM_001077186	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.2796	p.E933fs	1.000	NULL	HMMPfam_Myosin_N,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head,HMMSmart_SM00015,HMMPfam_IQ,HMMPfam_Myosin_tail_1,superfamily_Prefoldin	(deletion:cds_exon[50771418,50771624])	no_errors
MYO1G	64005	genome.wustl.edu	37	7	45009012	45009012	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	45009012	45009012	G	-	DEL	MYO1G	NM_033054	human	genbank	57_37b	-1	validated	frame_shift_del	c.1574	p.T525fs	1.000	HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Myosin_head	HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Myosin_head,HMMPfam_Myosin_TH1	(deletion:cds_exon[45009012,45009082])	no_errors
MYO3A	53904	genome.wustl.edu	37	10	26436364	26436364	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	26436364	26436364	C	T	SNP	MYO3A	NM_017433	human	genbank	57_37b	+1	reviewed	silent	c.2511	p.L837	0.961	superfamily_SSF52540,HMMSmart_MYSc,HMMPfam_Myosin_head	PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,superfamily_SSF52540,HMMSmart_MYSc,HMMPfam_Myosin_head,HMMSmart_IQ,HMMPfam_IQ	-	no_errors
NASP	4678	genome.wustl.edu	37	1	46072992	46072992	+	Splice_Site	SNP	G	G	C	novel	unknown	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	46072992	46072992	G	C	SNP	NASP	NM_172164	human	genbank	57_37b	+1	reviewed	splice_site	c.416-1	e6-1	1.000	-	-	-	no_errors
NRP2	8828	genome.wustl.edu	37	2	206631527	206631527	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	206631527	206631527	G	T	SNP	NRP2	NM_201266	human	genbank	57_37b	+1	reviewed	missense	c.2425	p.G809C	1.000	NULL	superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042,HMMSmart_SM00231,superfamily_Galactose-binding domain-like,HMMPfam_F5_F8_type_C,PatternScan_FA58C_1,PatternScan_FA58C_2,HMMSmart_SM00137,HMMPfam_MAM	-	no_errors
NUF2	83540	genome.wustl.edu	37	1	163318796	163318796	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	163318796	163318796	C	G	SNP	NUF2	NM_031423	human	genbank	57_37b	+1	reviewed	missense	c.1186	p.Q396E	0.133	NULL	HMMPfam_Nuf2	-	no_errors
OR1A1	8383	genome.wustl.edu	37	17	3119462	3119462	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	3119462	3119462	C	T	SNP	OR1A1	NM_014565	human	genbank	57_37b	+1	validated	missense	c.548	p.P183L	0.196	superfamily_SSF81321,HMMPfam_7tm_1	PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1	-	no_errors
OR1D4	0	genome.wustl.edu	37	17	2966511	2966511	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	2966511	2966511	G	A	SNP	OR1D4	NM_003552	human	genbank	57_37b	-1	provisional	missense	c.445	p.H149Y	1.000	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	-	no_errors
OR2T12	127064	genome.wustl.edu	37	1	248458366	248458366	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	248458366	248458366	A	T	SNP	OR2T12	NM_001004692	human	genbank	57_37b	-1	provisional	missense	c.515	p.I172N	0.006	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
OR4K15	81127	genome.wustl.edu	37	14	20444111	20444111	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	20444111	20444111	A	T	SNP	OR4K15	NM_001005486	human	genbank	57_37b	+1	provisional	missense	c.434	p.D145V	1.000	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
OR9G4	283189	genome.wustl.edu	37	11	56510658	56510658	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	56510658	56510658	G	A	SNP	OR9G4	NM_001005284	human	genbank	57_37b	-1	provisional	silent	c.630	p.Y210	0.104	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
OSBPL5	114879	genome.wustl.edu	37	11	3141816	3141816	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	3141816	3141816	G	A	SNP	OSBPL5	NM_020896	human	genbank	57_37b	-1	reviewed	silent	c.441	p.C147	0.992	superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH	superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,HMMPfam_Oxysterol_BP,PatternScan_OSBP	-	no_errors
PCDH19	57526	genome.wustl.edu	37	X	99551519	99551519	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	99551519	99551519	G	T	SNP	PCDH19	NM_001105243	human	genbank	57_37b	-1	validated	missense	c.3062	p.P1021H	1.000	NULL	HMMPfam_Cadherin_2,superfamily_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors
PIK3C3	5289	genome.wustl.edu	37	18	39542488	39542488	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	39542488	39542488	C	T	SNP	PIK3C3	NM_002647	human	genbank	57_37b	+1	validated	missense	c.292	p.P98S	1.000	HMMSmart_C2,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMPfam_PI3K_C2	HMMSmart_C2,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors
PKD1L2	114780	genome.wustl.edu	37	16	81232651	81232651	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	81232651	81232651	C	G	SNP	PKD1L2	NM_001076780	human	genbank	57_37b	-1	reviewed	missense	c.1159	p.V387L	0.148	NULL	superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C	-	no_errors
PNMAL1	55228	genome.wustl.edu	37	19	46973059	46973059	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	46973059	46973059	C	T	SNP	PNMAL1	NM_018215	human	genbank	57_37b	-1	validated	missense	c.1234	p.E412K	0.007	NULL	NULL	-	no_errors
PPP2R2D	55844	genome.wustl.edu	37	10	133748053	133748053	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	133748053	133748053	A	T	SNP	PPP2R2D	ENST00000455566	human	ensembl	57_37b	+1	known	missense	c.99	p.E33D	1.000	superfamily_WD40 repeat-like	superfamily_WD40 repeat-like,HMMPfam_PP2A_B_N,PatternScan_PR55_1,HMMSmart_SM00320,HMMPfam_PP2A_B_subs_rcg,PatternScan_PR55_2	-	no_errors
RAB13	5872	genome.wustl.edu	37	1	153955065	153955065	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	153955065	153955065	C	T	SNP	RAB13	NM_002870	human	genbank	57_37b	-1	provisional	silent	c.426	p.E142	0.995	superfamily_SSF52540,HMMSmart_RAB,HMMPfam_Ras	superfamily_SSF52540,HMMSmart_RAB,HMMPfam_Ras	-	no_errors
RASGRF1	5923	genome.wustl.edu	37	15	79291119	79291119	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	79291119	79291119	C	A	SNP	RASGRF1	NM_002891	human	genbank	57_37b	-1	reviewed	missense	c.2843	p.R948I	0.999	superfamily_Ras GEF,HMMPfam_RasGEF_N,HMMSmart_SM00229	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_IQ,superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,PatternScan_DH_1,superfamily_Ras GEF,HMMSmart_SM00229,HMMPfam_RasGEF_N,HMMSmart_SM00147,HMMPfam_RasGEF,PatternScan_RASGEF	-	no_errors
RPP40	10799	genome.wustl.edu	37	6	5000125	5000125	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	5000125	5000125	C	A	SNP	RPP40	NM_006638	human	genbank	57_37b	-1	validated	missense	c.351	p.L117F	1.000	HMMPfam_Ribonuc_P_40	HMMPfam_Ribonuc_P_40	-	no_errors
SCN3A	6328	genome.wustl.edu	37	2	166032862	166032862	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	166032862	166032862	G	A	SNP	SCN3A	NM_006922	human	genbank	57_37b	-1	reviewed	missense	c.43	p.R15C	1.000	NULL	superfamily_SSF81324,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,HMMSmart_IQ,HMMPfam_IQ	-	no_errors
SDF4	51150	genome.wustl.edu	37	1	1153907	1153924	+	In_Frame_Del	DEL	GTCTTTCACCCAGTTGTC	GTCTTTCACCCAGTTGTC	-	novel	unknown	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	GTCTTTCACCCAGTTGTC	GTCTTTCACCCAGTTGTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	1153907	1153924	GTCTTTCACCCAGTTGTC	-	DEL	SDF4	NM_016176	human	genbank	57_37b	-1	validated	in_frame_del	c.843_826	p.DNWVKD276in_frame_del	0.997:1.000:1.000:0.015:0.006:0.008:0.009:0.996:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	superfamily_EF-hand	superfamily_EF-hand,HMMSmart_SM00054,PatternScan_EF_HAND_1	(deletion:cds_exon[1153838,1154013])	no_errors
SECTM1	6398	genome.wustl.edu	37	17	80282641	80282641	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	80282641	80282641	C	A	SNP	SECTM1	NM_003004	human	genbank	57_37b	-1	reviewed	nonsense	c.220	p.E74*	0.000	NULL	NULL	-	no_errors
SEMA4F	10505	genome.wustl.edu	37	2	74889932	74889932	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	74889932	74889932	G	A	SNP	SEMA4F	NM_004263	human	genbank	57_37b	+1	provisional	missense	c.530	p.R177Q	1.000	superfamily_Sema domain,HMMPfam_Sema,HMMSmart_SM00630	superfamily_Sema domain,HMMPfam_Sema,HMMSmart_SM00630,HMMPfam_PSI,HMMSmart_SM00423,superfamily_Plexin repeat	-	no_errors
SETD1B	23067	genome.wustl.edu	37	12	122255181	122255182	+	Frame_Shift_Del	DEL	TG	TG	-	novel	unknown	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	TG	TG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	122255181	122255182	TG	-	DEL	SETD1B	NM_015048	human	genbank	57_37b	+1	validated	frame_shift_del	c.2958_2959	p.V987fs	0.821:1.000	NULL	superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1,HMMPfam_SET,superfamily_SSF82199,HMMSmart_SET,HMMSmart_PostSET	(deletion:cds_exon[122254939,122255200])	no_errors
SLC17A5	26503	genome.wustl.edu	37	6	74320122	74320122	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	74320122	74320122	C	T	SNP	SLC17A5	NM_012434	human	genbank	57_37b	-1	reviewed	splice_site	c.1259+1	e9+1	1.000	-	-	-	no_errors
SLC35A1	10559	genome.wustl.edu	37	6	88216123	88216123	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	88216123	88216123	G	T	SNP	SLC35A1	NM_006416	human	genbank	57_37b	+1	reviewed	silent	c.531	p.G177	0.759	HMMPfam_Nuc_sug_transp	superfamily_SSF103481,HMMPfam_Nuc_sug_transp	-	no_errors
SPEN	23013	genome.wustl.edu	37	1	16199441	16199442	+	Frame_Shift_Del	DEL	AG	AG	-	novel	unknown	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	AG	AG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	16199441	16199442	AG	-	DEL	SPEN	NM_015001	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.214_215	p.D73fs	1.000:1.000	superfamily_SSF54928,HMMSmart_RRM	superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1,superfamily_SPOC-like,HMMPfam_SPOC	(deletion:cds_exon[16199311,16199631])	no_errors
SPTB	6710	genome.wustl.edu	37	14	65271779	65271779	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	65271779	65271779	A	T	SNP	SPTB	NM_001024858	human	genbank	57_37b	-1	reviewed	missense	c.178	p.F60I	1.000	superfamily_Calponin-homology,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_CH	superfamily_Calponin-homology,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_CH,PatternScan_ACTININ_2,superfamily_Spectrin,HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH	-	no_errors
SRRM2	23524	genome.wustl.edu	37	16	2818050	2818050	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	2818050	2818050	G	A	SNP	SRRM2	NM_016333	human	genbank	57_37b	+1	validated	silent	c.7521	p.G2507	1.000	NULL	HMMPfam_cwf21	-	no_errors
STAG1	10274	genome.wustl.edu	37	3	136078104	136078104	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	136078104	136078104	T	A	SNP	STAG1	NM_005862	human	genbank	57_37b	-1	reviewed	missense	c.2822	p.N941I	1.000	NULL	superfamily_ARM-type_fold,HMMPfam_STAG	-	no_errors
SYCP2	10388	genome.wustl.edu	37	20	58467482	58467482	+	Splice_Site	SNP	C	C	A	novel	unknown	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	58467482	58467482	C	A	SNP	SYCP2	NM_014258	human	genbank	57_37b	-1	reviewed	splice_site	c.1928-1	e22-1	0.919	-	-	-	no_errors
TEP1	7011	genome.wustl.edu	37	14	20873681	20873681	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	20873681	20873681	C	T	SNP	TEP1	NM_007110	human	genbank	57_37b	-1	reviewed	missense	c.799	p.D267N	0.000	HMMPfam_TROVE	HMMPfam_TEP1_N,HMMPfam_TROVE,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_NACHT,HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
TEPP	374739	genome.wustl.edu	37	16	58021301	58021301	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	58021301	58021301	C	T	SNP	TEPP	NM_199046	human	genbank	57_37b	+1	validated	missense	c.868	p.R290C	0.403	NULL	NULL	-	no_errors
TMEFF2	23671	genome.wustl.edu	37	2	192820999	192820999	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	192820999	192820999	A	G	SNP	TMEFF2	NM_016192	human	genbank	57_37b	-1	provisional	missense	c.851	p.M284T	1.000	superfamily_EGF/Laminin,HMMPfam_EGF	superfamily_Kazal-type serine protease inhibitors,HMMSmart_SM00280,HMMPfam_Kazal_1,superfamily_EGF/Laminin,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_2	-	no_errors
TMEM178	130733	genome.wustl.edu	37	2	39934291	39934291	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	39934291	39934291	C	A	SNP	TMEM178	NM_152390	human	genbank	57_37b	+1	validated	missense	c.617	p.T206N	1.000	NULL	NULL	-	no_errors
TNIK	23043	genome.wustl.edu	37	3	170819300	170819300	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	170819300	170819300	C	T	SNP	TNIK	NM_015028	human	genbank	57_37b	-1	validated	silent	c.2529	p.E843	1.000	NULL	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMSmart_SM00036,HMMPfam_CNH	-	no_errors
TNRC6B	23112	genome.wustl.edu	37	22	40662003	40662003	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	40662003	40662003	G	A	SNP	TNRC6B	NM_015088	human	genbank	57_37b	+1	validated	missense	c.1769	p.R590H	1.000	NULL	HMMPfam_Ago_hook,superfamily_SSF54928	-	no_errors
TP53	7157	genome.wustl.edu	37	17	7577107	7577116	+	Frame_Shift_Del	DEL	ACAGGCACAA	ACAGGCACAA	-	novel	unknown	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	ACAGGCACAA	ACAGGCACAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7577107	7577116	ACAGGCACAA	-	DEL	TP53	NM_000546	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.831_822	p.C275fs	1.000:1.000:1.000:0.993:1.000:1.000:1.000:1.000:1.000:0.956	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	(deletion:cds_exon[7577019,7577155])	no_errors
TRIP12	9320	genome.wustl.edu	37	2	230678609	230678609	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	230678609	230678609	G	A	SNP	TRIP12	NM_004238	human	genbank	57_37b	-1	provisional	silent	c.1819	p.L607	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold,HMMPfam_WWE,superfamily_HECT,HMMSmart_HECTc,HMMPfam_HECT	-	no_errors
TRPC6	7225	genome.wustl.edu	37	11	101375047	101375065	+	Frame_Shift_Del	DEL	TGGGAGAACCGTGTCCCAT	TGGGAGAACCGTGTCCCAT	-	novel	unknown	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	TGGGAGAACCGTGTCCCAT	TGGGAGAACCGTGTCCCAT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	101375047	101375065	TGGGAGAACCGTGTCCCAT	-	DEL	TRPC6	NM_004621	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.653_635	p.D212fs	0.998:1.000:0.996:1.000:1.000:1.000:1.000:1.000:0.649:0.999:0.996:0.002:1.000:1.000:0.996:1.000:1.000:0.977:1.000	superfamily_Ankyrin repeat	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,HMMPfam_TRP_2,HMMPfam_Ion_trans	(deletion:cds_exon[101374755,101375529])	no_errors
TSC22D1	8848	genome.wustl.edu	37	13	45148403	45148403	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	45148403	45148403	G	A	SNP	TSC22D1	NM_183422	human	genbank	57_37b	-1	validated	missense	c.1808	p.P603L	1.000	NULL	PatternScan_TSC22,HMMPfam_TSC22	-	no_errors
TYR	7299	genome.wustl.edu	37	11	88911483	88911483	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	88911483	88911483	G	T	SNP	TYR	NM_000372	human	genbank	57_37b	+1	reviewed	missense	c.362	p.R121I	1.000	superfamily_Di-copper centre-containing domain	superfamily_Di-copper centre-containing domain,PatternScan_EGF_1,PatternScan_EGF_LAM_1,HMMPfam_Tyrosinase,PatternScan_TYROSINASE_1,PatternScan_TYROSINASE_2	-	no_errors
UBE3C	9690	genome.wustl.edu	37	7	157046642	157046657	+	Splice_Site	DEL	TCCCAGGTAGTTGAAC	TCCCAGGTAGTTGAAC	-	novel	unknown	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	TCCCAGGTAGTTGAAC	TCCCAGGTAGTTGAAC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	157046642	157046657	TCCCAGGTAGTTGAAC	-	DEL	UBE3C	NM_014671	human	genbank	57_37b	+1	validated	splice_site_del	c.2695-6_2695-1	e20-1	0.001:0.000:0.005:0.959:1.000:1.000:1.000:1.000:0.922:1.000:1.000:0.926:1.000:1.000:0.994:1.000	-	-	(deletion:intron[157041275,157046647], cds_exon[157046648,157046836])	no_errors
VWF	7450	genome.wustl.edu	37	12	6078528	6078528	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	6078528	6078528	G	T	SNP	VWF	NM_000552	human	genbank	57_37b	-1	reviewed	missense	c.7578	p.N2526K	0.993	NULL	HMMSmart_SM00216,HMMPfam_VWD,HMMPfam_C8,superfamily_Serine proterase inhibitors,HMMPfam_TIL,HMMSmart_SM00214,HMMSmart_SM00215,superfamily_PMP inhibitors,superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,HMMPfam_VWC,PatternScan_VWFC_1,HMMSmart_SM00041,PatternScan_CTCK_1	-	no_errors
WDR62	284403	genome.wustl.edu	37	19	36593726	36593737	+	In_Frame_Del	DEL	TCCTCTCAAGCC	TCCTCTCAAGCC	-	novel	unknown	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	TCCTCTCAAGCC	TCCTCTCAAGCC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	36593726	36593737	TCCTCTCAAGCC	-	DEL	WDR62	NM_001083961	human	genbank	57_37b	+1	validated	in_frame_del	c.3308_3319	p.LSSL1104in_frame_del	1.000:1.000:1.000:1.000:0.996:0.997:0.986:0.468:0.867:0.983:0.984:0.998	NULL	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40	(deletion:cds_exon[36593639,36593753])	no_errors
XIRP2	129446	genome.wustl.edu	37	2	168107363	168107363	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	168107363	168107363	C	A	SNP	XIRP2	NM_152381	human	genbank	57_37b	+1	validated	missense	c.9461	p.P3154Q	0.375	NULL	HMMPfam_Xin	-	no_errors
ZHX1	11244	genome.wustl.edu	37	8	124265811	124265819	+	In_Frame_Del	DEL	GTGCTTCAG	GTGCTTCAG	-	novel	unknown	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	GTGCTTCAG	GTGCTTCAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	124265811	124265819	GTGCTTCAG	-	DEL	ZHX1	NM_001017926	human	genbank	57_37b	-1	reviewed	in_frame_del	c.2376_2368	p.LKH790in_frame_del	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.997	superfamily_Homeodomain_like,HMMSmart_HOX	PatternScan_ZINC_FINGER_C2H2_1,PatternScan_HOMEOBOX_1,HMMSmart_ZnF_C2H2,HMMSmart_HOX,superfamily_Homeodomain_like,HMMPfam_Homeobox	(deletion:cds_exon[124265565,124268186])	no_errors
ZMIZ1	57178	genome.wustl.edu	37	10	81058277	81058277	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	81058277	81058277	G	A	SNP	ZMIZ1	NM_020338	human	genbank	57_37b	+1	validated	missense	c.1606	p.V536I	1.000	NULL	superfamily_RING/U-box,HMMPfam_zf-MIZ	-	no_errors
ZNF543	125919	genome.wustl.edu	37	19	57839308	57839308	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	57839308	57839308	G	C	SNP	ZNF543	NM_213598	human	genbank	57_37b	+1	validated	missense	c.478	p.D160H	0.001	NULL	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
ZNF626	199777	genome.wustl.edu	37	19	20829141	20829147	+	Frame_Shift_Del	DEL	TGTGCAG	TGTGCAG	-	novel	unknown	TCGA-AN-A0XU-01A-11D-A10G-09	TCGA-AN-A0XU-10A-01D-A10G-09	TGTGCAG	TGTGCAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	20829141	20829147	TGTGCAG	-	DEL	ZNF626	NM_001076675	human	genbank	57_37b	-1	validated	frame_shift_del	c.74_68	p.T23fs	0.204:0.225:0.233:0.261:0.272:0.295:0.306	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	(deletion:cds_exon[20829085,20829211])	no_errors
