Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU
ANK1	286	genome.wustl.edu	37	8	41554016	41554016	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A03L-01A-41W-A071-09	TCGA-AO-A03L-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	41554016	41554016	G	A	SNP	ANK1	NM_001142446	human	genbank	57_37b	-1	reviewed	missense	c.2948	p.T983M	0.985	HMMPfam_ZU5,HMMSmart_ZU5	superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank,HMMPfam_ZU5,HMMSmart_ZU5,HMMSmart_DEATH,superfamily_DEATH_like,HMMPfam_Death	-	no_errors
CBLB	868	genome.wustl.edu	37	3	105572448	105572448	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AO-A03L-01A-41W-A071-09	TCGA-AO-A03L-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	105572448	105572448	T	C	SNP	CBLB	NM_170662	human	genbank	57_37b	-1	validated	missense	c.229	p.I77V	1.000	HMMPfam_Cbl_N,superfamily_N-terminal domain of cbl (N-cbl)	HMMPfam_Cbl_N,superfamily_N-terminal domain of cbl (N-cbl),HMMPfam_Cbl_N2,superfamily_EF-hand,HMMPfam_Cbl_N3,superfamily_SH2 domain,superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMPfam_UBA,HMMSmart_SM00165	-	no_errors
CRHR1	1394	genome.wustl.edu	37	17	43893925	43893925	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-AO-A03L-01A-41W-A071-09	TCGA-AO-A03L-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	43893925	43893925	A	-	DEL	CRHR1	NM_001145146	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.218	p.Y73fs	1.000	superfamily_Hormone receptor domain (HRM Pfam 02793),HMMSmart_SM00008,HMMPfam_HRM	superfamily_Hormone receptor domain (HRM Pfam 02793),HMMSmart_SM00008,HMMPfam_HRM,PatternScan_G_PROTEIN_RECEP_F2_1,HMMPfam_7tm_2,superfamily_Family A G protein-coupled receptor-like,PatternScan_G_PROTEIN_RECEP_F2_2	(deletion:cds_exon[43893829,43893948])	no_errors
DDX3X	1654	genome.wustl.edu	37	X	41201888	41201888	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A03L-01A-41W-A071-09	TCGA-AO-A03L-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	41201888	41201888	C	T	SNP	DDX3X	NM_001356	human	genbank	57_37b	+1	reviewed	missense	c.425	p.P142L	1.000	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_DEAD,PatternScan_DEAD_ATP_HELICASE,HMMSmart_SM00490,HMMPfam_Helicase_C	-	no_errors
ESX1	80712	genome.wustl.edu	37	X	103499462	103499462	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AO-A03L-01A-41W-A071-09	TCGA-AO-A03L-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	103499462	103499462	G	A	SNP	ESX1	NM_153448	human	genbank	57_37b	-1	reviewed	silent	c.69	p.I23	0.000	NULL	superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	-	no_errors
GOLGB1	2804	genome.wustl.edu	37	3	121410367	121410367	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AO-A03L-01A-41W-A071-09	TCGA-AO-A03L-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	121410367	121410367	G	C	SNP	GOLGB1	NM_004487	human	genbank	57_37b	-1	validated	missense	c.7829	p.S2610C	0.075	HMMSmart_SM00340	superfamily_Spectrin repeat,superfamily_Prefoldin,HMMSmart_SM00340	-	no_errors
KCNA7	3743	genome.wustl.edu	37	19	49573837	49573838	+	Frame_Shift_Del	DEL	AC	AC	-	novel	unknown	TCGA-AO-A03L-01A-41W-A071-09	TCGA-AO-A03L-10A-01W-A071-09	AC	AC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	49573837	49573838	AC	-	DEL	KCNA7	NM_031886	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.854_853	p.V285fs	1.000:1.000	superfamily_SSF81324,HMMPfam_Ion_trans	superfamily_BTB/POZ_fold,HMMSmart_BTB,HMMPfam_K_tetra,superfamily_SSF81324,HMMPfam_Ion_trans	(deletion:cds_exon[49573320,49574135])	no_errors
KLF11	8462	genome.wustl.edu	37	2	10188252	10188252	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AO-A03L-01A-41W-A071-09	TCGA-AO-A03L-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	10188252	10188252	A	G	SNP	KLF11	NM_003597	human	genbank	57_37b	+1	validated	missense	c.788	p.N263S	0.584	NULL	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
KRT1	3848	genome.wustl.edu	37	12	53072333	53072333	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A03L-01A-41W-A071-09	TCGA-AO-A03L-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	53072333	53072333	G	A	SNP	KRT1	NM_006121	human	genbank	57_37b	-1	reviewed	missense	c.799	p.R267W	0.839	HMMPfam_Filament	HMMPfam_Filament,superfamily_Prefoldin,PatternScan_IF	-	no_errors
LOC642406	0	genome.wustl.edu	37	9	40582267	40582267	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A03L-01A-41W-A071-09	TCGA-AO-A03L-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	40582267	40582267	C	T	SNP	LOC642406	XM_002344253	human	genbank	57_37b	-1	model	missense	c.374	p.R125Q	0.859	HMMSmart_SM00231,superfamily_Galactose-binding domain-like,HMMPfam_F5_F8_type_C	HMMSmart_SM00231,superfamily_Galactose-binding domain-like,HMMPfam_F5_F8_type_C,PatternScan_FA58C_1,PatternScan_FA58C_2,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2	-	no_errors
MCOLN3	55283	genome.wustl.edu	37	1	85491733	85491733	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AO-A03L-01A-41W-A071-09	TCGA-AO-A03L-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	85491733	85491733	T	G	SNP	MCOLN3	NM_018298	human	genbank	57_37b	-1	validated	missense	c.984	p.E328D	0.671	NULL	HMMPfam_Ion_trans	-	no_errors
MECP2	4204	genome.wustl.edu	37	X	153296385	153296385	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AO-A03L-01A-41W-A071-09	TCGA-AO-A03L-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	153296385	153296385	C	G	SNP	MECP2	NM_001110792	human	genbank	57_37b	-1	reviewed	missense	c.930	p.E310D	1.000	NULL	superfamily_DNA-binding_integrase-type,HMMPfam_MBD,HMMSmart_MBD,HMMPfam_AT_hook,HMMSmart_AT_hook	-	no_errors
PAK7	57144	genome.wustl.edu	37	20	9520175	9520175	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AO-A03L-01A-41W-A071-09	TCGA-AO-A03L-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	9520175	9520175	T	C	SNP	PAK7	NM_020341	human	genbank	57_37b	-1	reviewed	silent	c.2094	p.P698	0.440	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase	PatternScan_PROTEIN_KINASE_ST,HMMPfam_PBD,HMMSmart_PBD,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP	-	no_errors
PIK3CA	5290	genome.wustl.edu	37	3	178921553	178921553	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AO-A03L-01A-41W-A071-09	TCGA-AO-A03L-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	178921553	178921553	T	A	SNP	PIK3CA	NM_006218	human	genbank	57_37b	+1	reviewed	missense	c.1035	p.N345K	1.000	HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors
PRRX1	5396	genome.wustl.edu	37	1	170695522	170695522	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A03L-01A-41W-A071-09	TCGA-AO-A03L-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	170695522	170695522	G	A	SNP	PRRX1	NM_022716	human	genbank	57_37b	+1	reviewed	nonsense	c.579	p.W193*	1.000	NULL	superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1,HMMPfam_OAR	-	no_errors
PTPRB	5787	genome.wustl.edu	37	12	71029633	71029633	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AO-A03L-01A-41W-A071-09	TCGA-AO-A03L-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	71029633	71029633	G	T	SNP	PTPRB	NM_001109754	human	genbank	57_37b	-1	reviewed	missense	c.269	p.A90E	1.000	superfamily_Ricin B-like lectins,HMMPfam_Ricin_B_lectin	superfamily_Ricin B-like lectins,HMMPfam_Ricin_B_lectin,HMMSmart_SM00060,HMMPfam_fn3,superfamily_Fibronectin type III,superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1	-	no_errors
PYHIN1	149628	genome.wustl.edu	37	1	158912143	158912143	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AO-A03L-01A-41W-A071-09	TCGA-AO-A03L-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	158912143	158912143	A	T	SNP	PYHIN1	NM_152501	human	genbank	57_37b	+1	validated	missense	c.956	p.K319I	0.000	HMMPfam_HIN	HMMPfam_PAAD_DAPIN,HMMPfam_HIN	-	no_errors
SERPINB8	5271	genome.wustl.edu	37	18	61654433	61654433	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AO-A03L-01A-41W-A071-09	TCGA-AO-A03L-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	61654433	61654433	C	A	SNP	SERPINB8	NM_002640	human	genbank	57_37b	+1	validated	missense	c.1046	p.A349E	0.975	HMMPfam_Serpin,superfamily_Prot_inh_serpin,HMMSmart_SERPIN,PatternScan_SERPIN	HMMPfam_Serpin,superfamily_Prot_inh_serpin,HMMSmart_SERPIN,PatternScan_SERPIN	-	no_errors
SETD7	80854	genome.wustl.edu	37	4	140450374	140450374	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A03L-01A-41W-A071-09	TCGA-AO-A03L-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	140450374	140450374	C	T	SNP	SETD7	NM_030648	human	genbank	57_37b	-1	validated	missense	c.373	p.D125N	1.000	superfamily_Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain,HMMPfam_MORN	superfamily_Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain,HMMPfam_MORN,superfamily_SET domain,HMMPfam_SET,HMMSmart_SM00317	-	no_errors
TP53	7157	genome.wustl.edu	37	17	7577498	7577498	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-AO-A03L-01A-41W-A071-09	TCGA-AO-A03L-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7577498	7577498	C	T	SNP	TP53	NM_000546	human	genbank	57_37b	-1	reviewed	splice_site	c.782+1	e6+1	1.000	-	-	-	no_errors
UBN1	29855	genome.wustl.edu	37	16	4920242	4920242	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A03L-01A-41W-A071-09	TCGA-AO-A03L-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	4920242	4920242	G	A	SNP	UBN1	NM_001079514	human	genbank	57_37b	+1	validated	missense	c.1211	p.S404N	0.985	NULL	NULL	-	no_errors
XRN2	22803	genome.wustl.edu	37	20	21307234	21307234	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A03L-01A-41W-A071-09	TCGA-AO-A03L-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	21307234	21307234	G	A	SNP	XRN2	NM_012255	human	genbank	57_37b	+1	reviewed	missense	c.310	p.G104R	1.000	HMMPfam_XRN_N	HMMPfam_XRN_N	-	no_errors
