Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
C1orf87	127795	genome.wustl.edu	37	1	60456364	60456364	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A05J-01A-11W-A027-09	TCGA-AP-A05J-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152377.1	-1	predicted	p.R541Q	0.254	503	0%	527	47.8%	0	-	benign(0.131)	tolerated(0.85)	neutral(0.011)	NULL
SV2A	9900	genome.wustl.edu	37	1	149879346	149879346	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A05J-01A-11W-A027-09	TCGA-AP-A05J-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014849.3	-1	validated	p.D528E	0.996	243	0%	268	48.1%	0	-	possibly_damaging(0.892)	deleterious(0.01)	deleterious(0.757)	HMMPfam_MFS_1
OR6N1	128372	genome.wustl.edu	37	1	158735840	158735840	+	Silent	SNP	G	G	A	novel		TCGA-AP-A05J-01A-11W-A027-09	TCGA-AP-A05J-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005185.1	-1	provisional	p.F211	0.003	344	0%	324	43.5%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OBSCN	84033	genome.wustl.edu	37	1	228558889	228558889	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AP-A05J-01A-11W-A027-09	TCGA-AP-A05J-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098623.1	+1	reviewed	p.A6804P	0.160	4	0.000	7	0.714	0	-	probably_damaging(0.981)	deleterious(0)	deleterious(0.870)	NULL
RYR2	6262	genome.wustl.edu	37	1	237890494	237890494	+	Silent	SNP	G	G	T	novel		TCGA-AP-A05J-01A-11W-A027-09	TCGA-AP-A05J-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001035.2	+1	reviewed	p.L3611	1.000	190	0%	143	25.9%	0	-	-	-	-	NULL
RYR2	6262	genome.wustl.edu	37	1	237895389	237895389	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A05J-01A-11W-A027-09	TCGA-AP-A05J-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001035.2	+1	reviewed	p.R3660I	0.999	205	0%	171	46.8%	0	-	benign(0.19)	-	-	NULL
DOCK10	55619	genome.wustl.edu	37	2	225721665	225721665	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A05J-01A-11W-A027-09	TCGA-AP-A05J-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014689.2	-1	validated	p.R574G	1.000	45	0%	60	25%	0	-	possibly_damaging(0.648)	tolerated(0.24)	neutral(0.265)	NULL
C3orf75	54859	genome.wustl.edu	37	3	47539822	47539822	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A05J-01A-11W-A027-09	TCGA-AP-A05J-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031703.2	-1	validated	p.R209Q	1.000	41	0%	56	51.8%	19	0%	possibly_damaging(0.727)	tolerated(0.34)	neutral(0.288)	HMMPfam_DUF2348
CPB1	1360	genome.wustl.edu	37	3	148545842	148545842	+	Missense_Mutation	SNP	G	G	A	rs193238667	by1000genomes	TCGA-AP-A05J-01A-11W-A027-09	TCGA-AP-A05J-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001871.2	+1	reviewed	p.R42H	0.001	201	0%	180	44.4%	0	-	unknown(0)	tolerated(0.34)	-	HMMPfam_Propep_M14,superfamily_Protease propeptides/inhibitors
SLC2A2	6514	genome.wustl.edu	37	3	170716904	170716904	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A05J-01A-11W-A027-09	TCGA-AP-A05J-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000340.1	-1	reviewed	p.S374R	0.114	313	0%	339	40.1%	0	-	possibly_damaging(0.649)	deleterious(0.01)	deleterious(0.634)	HMMPfam_Sugar_tr,superfamily_MFS_gen_substrate_transporter
MRPL47	57129	genome.wustl.edu	37	3	179311677	179311677	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A05J-01A-11W-A027-09	TCGA-AP-A05J-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020409.2	-1	reviewed	p.D137Y	0.227	255	0%	247	55.1%	73	0%	possibly_damaging(0.746)	deleterious(0.03)	deleterious(0.639)	HMMPfam_MRP-L47
MB21D2	151963	genome.wustl.edu	37	3	192516732	192516732	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A05J-01A-11W-A027-09	TCGA-AP-A05J-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178496.3	-1	validated	p.M307V	1.000	52	0%	84	22.6%	0	-	benign(0.138)	tolerated(0.18)	neutral(0.068)	NULL
LAP3	51056	genome.wustl.edu	37	4	17585168	17585168	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A05J-01A-11W-A027-09	TCGA-AP-A05J-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015907.2	+1	validated	p.A148S	1.000	90	0%	97	57.7%	10	0%	benign(0.022)	tolerated(0.06)	neutral(0.324)	HMMPfam_Peptidase_M17_N,superfamily_Macro domain-like
UCHL1	7345	genome.wustl.edu	37	4	41270034	41270034	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A05J-01A-11W-A027-09	TCGA-AP-A05J-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004181.4	+1	reviewed	p.E206*	1.000	53	0%	48	39.6%	13	0%	-	-	-	HMMPfam_Peptidase_C12,superfamily_SSF54001
SEC31A	22872	genome.wustl.edu	37	4	83750193	83750193	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A05J-01A-11W-A027-09	TCGA-AP-A05J-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001077207.1	-1	reviewed	p.N996S	1.000	114	0%	123	43.9%	82	0%	probably_damaging(0.998)	tolerated(0.18)	deleterious(0.530)	NULL
FBXW7	55294	genome.wustl.edu	37	4	153247289	153247289	+	Missense_Mutation	SNP	G	G	A	rs149680468		TCGA-AP-A05J-01A-11W-A027-09	TCGA-AP-A05J-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033632.2	-1	reviewed	p.R505C	1.000	194	0%	181	40.3%	5	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
MCTP1	79772	genome.wustl.edu	37	5	94046537	94046537	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A05J-01A-11W-A027-09	TCGA-AP-A05J-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024717.4	-1	validated	p.I939T	1.000	75	0%	77	45.5%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
PCDHA4	56144	genome.wustl.edu	37	5	140188969	140188969	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A05J-01A-11W-A027-09	TCGA-AP-A05J-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018907.2	+1	reviewed	p.A733T	0.057	49	0%	46	47.8%	1	0%	benign(0)	tolerated(0.25)	neutral(0.037)	NULL
CNOT8	9337	genome.wustl.edu	37	5	154244884	154244884	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A05J-01A-11W-A027-09	TCGA-AP-A05J-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004779.4	+1	provisional	p.E84K	1.000	144	0%	160	46.9%	8	0%	benign(0.103)	tolerated(0.06)	neutral(0.331)	HMMPfam_CAF1,superfamily_Ribonuclease H-like
BTNL2	56244	genome.wustl.edu	37	6	32362627	32362627	+	Silent	SNP	G	G	A	novel		TCGA-AP-A05J-01A-11W-A027-09	TCGA-AP-A05J-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019602.1	-1	provisional	p.H418	0.025	194	0%	202	42.6%	0	-	-	-	-	HMMPfam_C2-set_2,superfamily_Immunoglobulin
RPS10	6204	genome.wustl.edu	37	6	34392973	34392973	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A05J-01A-11W-A027-09	TCGA-AP-A05J-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001014.3	-1	reviewed	p.I9T	1.000	28	0%	28	50%	722	0.2%	benign(0.009)	tolerated(0.42)	neutral(0.015)	HMMPfam_S10_plectin
POU3F2	5454	genome.wustl.edu	37	6	99283794	99283794	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A05J-01A-11W-A027-09	TCGA-AP-A05J-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005604.2	+1	validated	p.A349T	1.000	48	0%	26	88.5%	0	-	benign(0.141)	tolerated(0.08)	neutral(0.312)	superfamily_Homeodomain-like
PRDM1	639	genome.wustl.edu	37	6	106555117	106555117	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A05J-01A-11W-A027-09	TCGA-AP-A05J-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001198.3	+1	reviewed	p.V745A	0.999	170	0.6%	76	81.6%	1	0%	benign(0.108)	deleterious(0)	neutral(0.453)	NULL
PPP1R17	10842	genome.wustl.edu	37	7	31736617	31736617	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AP-A05J-01A-11W-A027-09	TCGA-AP-A05J-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006658.3	+1	validated	p.Q92E	0.992	205	0%	203	48.3%	0	-	possibly_damaging(0.882)	deleterious(0)	deleterious(0.789)	NULL
MUC3A	4584	genome.wustl.edu	37	7	100551076	100551076	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A05J-01A-11W-A027-09	TCGA-AP-A05J-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001725354.2	+1	model	p.P553T	0.000	238	0%	270	43.7%	0	-	-	-	-	NULL
ENTPD4	9583	genome.wustl.edu	37	8	23299143	23299143	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A05J-01A-11W-A027-09	TCGA-AP-A05J-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004901.3	-1	validated	p.G274D	1.000	240	0%	124	87.9%	6	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_GDA1_CD39
PRKDC	5591	genome.wustl.edu	37	8	48686735	48686735	+	Nonstop_Mutation	SNP	C	C	A	novel		TCGA-AP-A05J-01A-11W-A027-09	TCGA-AP-A05J-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000314191	-1	known	p.*4128L	1.000	28	0%	24	45.8%	53	0%	-	-	-	NULL
CNGB3	54714	genome.wustl.edu	37	8	87738841	87738841	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A05J-01A-11W-A027-09	TCGA-AP-A05J-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019098.4	-1	reviewed	p.P86S	0.058	297	0%	226	42%	0	-	benign(0)	deleterious(0.04)	neutral(0.349)	NULL
ALDH18A1	5832	genome.wustl.edu	37	10	97402778	97402778	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AP-A05J-01A-11W-A027-09	TCGA-AP-A05J-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002860.3	-1	reviewed	p.L92V	0.580	60	0%	97	64.9%	20	0%	probably_damaging(1)	tolerated(0.15)	deleterious(0.741)	HMMPfam_AA_kinase,superfamily_Carbamate kinase-like
DCHS1	8642	genome.wustl.edu	37	11	6645139	6645139	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A05J-01A-11W-A027-09	TCGA-AP-A05J-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003737.2	-1	reviewed	p.V2590I	0.958	76	0%	87	39.1%	2	0%	benign(0.031)	tolerated(1)	neutral(0.002)	HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_Cadherin
UEVLD	55293	genome.wustl.edu	37	11	18568531	18568531	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A05J-01A-11W-A027-09	TCGA-AP-A05J-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040697.1	-1	validated	p.S261L	1.000	94	0%	102	51%	2	0%	possibly_damaging(0.839)	deleterious(0)	deleterious(0.765)	HMMPfam_Ldh_1_N,superfamily_NAD(P)-binding Rossmann-fold domains
OR5M3	219482	genome.wustl.edu	37	11	56237488	56237488	+	Silent	SNP	G	G	A	novel		TCGA-AP-A05J-01A-11W-A027-09	TCGA-AP-A05J-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004742.1	-1	provisional	p.Y162	0.000	285	0%	288	51%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
NPAS4	266743	genome.wustl.edu	37	11	66190406	66190406	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A05J-01A-11W-A027-09	TCGA-AP-A05J-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178864.3	+1	validated	p.S231Y	1.000	45	0%	43	48.8%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMSmart_PAS,HMMPfam_PAS_3,superfamily_SSF55785
GNS	2799	genome.wustl.edu	37	12	65122806	65122806	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A05J-01A-11W-A027-09	TCGA-AP-A05J-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002076.3	-1	reviewed	p.T377I	1.000	131	0%	116	44.8%	8	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sulfatase,superfamily_Alkaline_phosphatase_core
SLC15A4	121260	genome.wustl.edu	37	12	129299500	129299500	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A05J-01A-11W-A027-09	TCGA-AP-A05J-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145648.3	-1	validated	p.S221N	1.000	261	0%	228	46.5%	3	0%	benign(0.045)	tolerated(0.24)	neutral(0.040)	HMMPfam_PTR2,superfamily_MFS general substrate transporter
SACS	26278	genome.wustl.edu	37	13	23909977	23909977	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A05J-01A-11W-A027-09	TCGA-AP-A05J-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014363.4	-1	reviewed	p.D2680Y	1.000	96	0%	106	47.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
KIAA1704	55425	genome.wustl.edu	37	13	45602090	45602090	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A05J-01A-11W-A027-09	TCGA-AP-A05J-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018559.2	+1	predicted	p.R325S	0.999	167	0%	127	53.5%	12	0%	benign(0.216)	tolerated(0.09)	neutral(0.318)	NULL
ABHD13	84945	genome.wustl.edu	37	13	108881664	108881664	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A05J-01A-11W-A027-09	TCGA-AP-A05J-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032859.2	+1	validated	p.L33S	1.000	146	0%	139	38.8%	5	0%	benign(0.024)	tolerated(0.12)	neutral(0.262)	NULL
RPL10L	140801	genome.wustl.edu	37	14	47120570	47120570	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A05J-01A-11W-A027-09	TCGA-AP-A05J-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080746.2	-1	reviewed	p.G124S	1.000	127	0.8%	127	22.8%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_Ribosomal_L16,superfamily_Ribosomal_L10e/L16,PatternScan_RIBOSOMAL_L10E
SIX6	4990	genome.wustl.edu	37	14	60976476	60976476	+	Silent	SNP	G	G	C	novel		TCGA-AP-A05J-01A-11W-A027-09	TCGA-AP-A05J-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007374.2	+1	reviewed	p.P120	0.859	20	0%	25	48%	0	-	-	-	-	NULL
TOX3	27324	genome.wustl.edu	37	16	52473330	52473330	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A05J-01A-11W-A027-09	TCGA-AP-A05J-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080430.2	-1	reviewed	p.R513H	0.966	32	0%	11	90.9%	4	0%	unknown(0)	tolerated(0.29)	-	NULL
E2F4	1874	genome.wustl.edu	37	16	67229820	67229820	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AP-A05J-01A-11W-A027-09	TCGA-AP-A05J-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001950.3	+1	reviewed	p.S315T	0.994	32	0%	35	82.9%	33	0%	benign(0.007)	tolerated(0.41)	neutral(0.015)	NULL
CLEC18C	283971	genome.wustl.edu	37	16	70211337	70211337	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A05J-01A-11W-A027-09	TCGA-AP-A05J-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173619.2	+1	validated	p.A137V	0.000	28	0%	12	58.3%	0	-	benign(0.059)	tolerated(0.22)	neutral(0.046)	HMMSmart_SM00198,HMMPfam_SCP,superfamily_PR-1-like
TP53	7157	genome.wustl.edu	37	17	7577121	7577121	+	Missense_Mutation	SNP	G	G	A	rs121913343	byCluster	TCGA-AP-A05J-01A-11W-A027-09	TCGA-AP-A05J-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000546.4	-1	reviewed	p.R273C	0.830	84	0%	58	86.2%	37	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_p53-like transcription factors,HMMPfam_P53
ARHGAP35	2909	genome.wustl.edu	37	19	47422114	47422114	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A05J-01A-11W-A027-09	TCGA-AP-A05J-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004491.4	+1	reviewed	p.S61N	1.000	93	0%	121	38%	0	-	benign(0.225)	tolerated(0.08)	neutral(0.323)	superfamily_P-loop containing nucleoside triphosphate hydrolases
ARHGAP35	2909	genome.wustl.edu	37	19	47422527	47422530	+	Frame_Shift_Del	DEL	CTGA	CTGA	-	novel		TCGA-AP-A05J-01A-11W-A027-09	TCGA-AP-A05J-10A-01W-A027-09	CTGA	CTGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004491.4	+1	reviewed	p.T200fs	1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
KIR3DL3	115653	genome.wustl.edu	37	19	55247528	55247528	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A05J-01A-11W-A027-09	TCGA-AP-A05J-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153443.3	+1	reviewed	p.R400G	0.122	689	0%	672	42%	0	-	benign(0)	deleterious(0)	neutral(0.445)	NULL
SIGLEC1	6614	genome.wustl.edu	37	20	3677789	3677789	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A05J-01A-11W-A027-09	TCGA-AP-A05J-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_023068.3	-1	reviewed	p.R775C	0.506	7	0.000	11	0.364	0	-	benign(0.097)	deleterious(0.02)	neutral(0.391)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
KRTAP27-1	643812	genome.wustl.edu	37	21	31709534	31709534	+	Silent	SNP	G	G	A	novel		TCGA-AP-A05J-01A-11W-A027-09	TCGA-AP-A05J-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001077711.1	-1	provisional	p.F151	0.135	284	0%	253	42.7%	0	-	-	-	-	HMMPfam_PMG
SLC37A1	54020	genome.wustl.edu	37	21	43994957	43994957	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A05J-01A-11W-A027-09	TCGA-AP-A05J-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018964.3	+1	reviewed	p.L485F	1.000	36	0%	37	56.8%	15	0%	benign(0.004)	tolerated(0.4)	neutral(0.016)	superfamily_MFS general substrate transporter
BCOR	54880	genome.wustl.edu	37	X	39932475	39932475	+	Silent	SNP	G	G	A	novel		TCGA-AP-A05J-01A-11W-A027-09	TCGA-AP-A05J-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001123385.1	-1	reviewed	p.T708	0.022	33	0%	36	61.1%	0	-	-	-	-	NULL
FRMPD3	84443	genome.wustl.edu	37	X	106808260	106808260	+	Silent	SNP	C	C	T	novel		TCGA-AP-A05J-01A-11W-A027-09	TCGA-AP-A05J-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_042978.6	+1	model	p.G453	0.473	69	0%	92	53.3%	0	-	-	-	-	NULL
RGAG1	57529	genome.wustl.edu	37	X	109697237	109697237	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A05J-01A-11W-A027-09	TCGA-AP-A05J-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020769.2	+1	validated	p.A1131V	0.000	555	0%	458	40.4%	0	-	benign(0)	tolerated(0.49)	neutral(0.011)	NULL
ODZ1	10178	genome.wustl.edu	37	X	123779056	123779056	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A05J-01A-11W-A027-09	TCGA-AP-A05J-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014253.3	-1	reviewed	p.G605S	1.000	389	0%	396	47%	0	-	possibly_damaging(0.921)	deleterious(0)	deleterious(0.816)	HMMSmart_EGF,HMMPfam_EGF_2
