Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU
ADARB1	104	genome.wustl.edu	37	21	46604943	46604943	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	46604943	46604943	C	T	SNP	ADARB1	NM_015833	human	genbank	57_37b	+1	validated	missense	c.1622	p.T541M	1.000	HMMSmart_SM00552,HMMPfam_A_deamin	superfamily_dsRNA-binding domain-like,HMMPfam_dsrm,HMMSmart_SM00358,HMMSmart_SM00552,HMMPfam_A_deamin,superfamily_Cytokine	-	no_errors
ALMS1	7840	genome.wustl.edu	37	2	73677994	73677994	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	73677994	73677994	A	G	SNP	ALMS1	NM_015120	human	genbank	57_37b	+1	reviewed	missense	c.4337	p.H1446R	0.000	NULL	NULL	-	no_errors
ATG16L2	89849	genome.wustl.edu	37	11	72535862	72535862	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	72535862	72535862	T	C	SNP	ATG16L2	NM_033388	human	genbank	57_37b	+1	validated	missense	c.971	p.L324P	0.843	superfamily_WD40 repeat-like	HMMPfam_ATG16,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors
BLZF1	8548	genome.wustl.edu	37	1	169347609	169347609	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	169347609	169347609	G	T	SNP	BLZF1	NM_003666	human	genbank	57_37b	+1	validated	silent	c.510	p.G170	0.958	NULL	HMMPfam_DASH_Hsk3	-	no_errors
C10orf79	80217	genome.wustl.edu	37	10	105953739	105953739	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	105953739	105953739	A	T	SNP	C10orf79	NM_025145	human	genbank	57_37b	-1	provisional	missense	c.1327	p.S443T	0.126	superfamily_WD40 repeat-like	superfamily_WD40 repeat-like	-	no_errors
C11orf95	65998	genome.wustl.edu	37	11	63533335	63533337	+	In_Frame_Del	DEL	TCC	TCC	-	novel	unknown	TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	TCC	TCC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	63533335	63533337	TCC	-	DEL	C11orf95	NM_001144936	human	genbank	57_37b	-1	predicted	in_frame_del	c.581_579	p.E197in_frame_del	0.630:0.736:0.723	NULL	HMMSmart_SM00355	(deletion:cds_exon[63533279,63533776])	no_errors
C20orf186	149954	genome.wustl.edu	37	20	31671497	31671497	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	31671497	31671497	C	T	SNP	C20orf186	NM_182519	human	genbank	57_37b	+1	validated	missense	c.494	p.A165V	0.913	NULL	HMMSmart_SM00328,HMMPfam_LBP_BPI_CETP,superfamily_Bactericidal permeability-increasing protein BPI,HMMSmart_SM00329,HMMPfam_LBP_BPI_CETP_C	-	no_errors
CCDC108	255101	genome.wustl.edu	37	2	219895498	219895498	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	219895498	219895498	G	A	SNP	CCDC108	NM_194302	human	genbank	57_37b	-1	provisional	silent	c.1074	p.A358	0.000	NULL	PatternScan_MGMT,superfamily_PapD-like	-	no_errors
CLDN11	5010	genome.wustl.edu	37	3	170136900	170136900	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	170136900	170136900	G	A	SNP	CLDN11	NM_005602	human	genbank	57_37b	+1	reviewed	missense	c.46	p.V16M	1.000	HMMPfam_PMP22_Claudin	HMMPfam_PMP22_Claudin,PatternScan_CLAUDIN	-	no_errors
CPNE4	131034	genome.wustl.edu	37	3	131388574	131388574	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	131388574	131388574	G	T	SNP	CPNE4	NM_130808	human	genbank	57_37b	-1	reviewed	nonsense	c.626	p.S209*	1.000	HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_C2	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2,superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_Copine,PatternScan_CYTOCHROME_P450	-	no_errors
CRABP1	1381	genome.wustl.edu	37	15	78633562	78633562	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	78633562	78633562	G	C	SNP	CRABP1	NM_004378	human	genbank	57_37b	+1	reviewed	missense	c.248	p.R83T	1.000	superfamily_Lipocalins,HMMPfam_Lipocalin	superfamily_Lipocalins,HMMPfam_Lipocalin,PatternScan_FABP	-	no_errors
CSRP2BP	57325	genome.wustl.edu	37	20	18163939	18163940	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	18163939	18163940	-	T	INS	CSRP2BP	NM_020536	human	genbank	57_37b	+1	reviewed	frame_shift_ins	c.1981_1982	p.P661fs	1.000:1.000	superfamily_Acyl_CoA_acyltransferase	superfamily_Acyl_CoA_acyltransferase,HMMPfam_Acetyltransf_1	-	no_errors
CSRP2BP	57325	genome.wustl.edu	37	20	18163944	18163945	+	Splice_Site	DEL	TA	TA	-	novel	unknown	TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	TA	TA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	18163944	18163945	TA	-	DEL	CSRP2BP	NM_020536	human	genbank	57_37b	+1	reviewed	splice_site_del	c.1984+2_1984+1	e8+2	1.000:1.000	-	-	(deletion:intron[18163943,18165245])	no_errors
CTNNBL1	56259	genome.wustl.edu	37	20	36407705	36407705	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	36407705	36407705	C	T	SNP	CTNNBL1	NM_030877	human	genbank	57_37b	+1	reviewed	silent	c.999	p.G333	0.111	superfamily_ARM repeat	HMMPfam_DUF1716,superfamily_ARM repeat	-	no_errors
CYP4B1	1580	genome.wustl.edu	37	1	47284452	47284452	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	47284452	47284452	A	C	SNP	CYP4B1	NM_001099772	human	genbank	57_37b	+1	reviewed	missense	c.1505	p.H502P	0.005	superfamily_Cytochrome_P450,HMMPfam_p450	superfamily_Cytochrome_P450,HMMPfam_p450,PatternScan_CYTOCHROME_P450	-	no_errors
DDIT4L	115265	genome.wustl.edu	37	4	101109088	101109088	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	101109088	101109088	C	T	SNP	DDIT4L	NM_145244	human	genbank	57_37b	-1	provisional	missense	c.328	p.V110M	1.000	HMMPfam_RTP801_C	HMMPfam_RTP801_C	-	no_errors
DLX6	1750	genome.wustl.edu	37	7	96635577	96635577	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	96635577	96635577	C	A	SNP	DLX6	NM_005222	human	genbank	57_37b	+1	reviewed	missense	c.204	p.H68Q	1.000	NULL	superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	-	no_errors
EEA1	8411	genome.wustl.edu	37	12	93170706	93170706	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	93170706	93170706	G	A	SNP	EEA1	NM_003566	human	genbank	57_37b	-1	validated	nonsense	c.4027	p.Q1343*	1.000	superfamily_FYVE_PHD_ZnF	HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_FYVE_PHD_ZnF,HMMSmart_FYVE,HMMPfam_FYVE	-	no_errors
EIF2S3	1968	genome.wustl.edu	37	X	24082440	24082440	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	24082440	24082440	C	A	SNP	EIF2S3	NM_001415	human	genbank	57_37b	+1	reviewed	missense	c.760	p.P254T	1.000	superfamily_Translation proteins	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_GTP_EFTU,superfamily_Translation proteins,HMMPfam_GTP_EFTU_D2,HMMPfam_eIF2_C,superfamily_EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain	-	no_errors
EN1	2019	genome.wustl.edu	37	2	119600568	119600568	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	119600568	119600568	C	A	SNP	EN1	NM_001426	human	genbank	57_37b	-1	reviewed	missense	c.1125	p.Q375H	1.000	superfamily_Homeodomain_like,HMMPfam_Engrail_1_C_sig,PatternScan_ENGRAILED	superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1,HMMPfam_Engrail_1_C_sig,PatternScan_ENGRAILED	-	no_errors
FAM70B	348013	genome.wustl.edu	37	13	114498127	114498127	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	114498127	114498127	G	T	SNP	FAM70B	NM_182614	human	genbank	57_37b	+1	provisional	missense	c.259	p.A87S	1.000	NULL	NULL	-	no_errors
FGF10	2255	genome.wustl.edu	37	5	44388528	44388528	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	44388528	44388528	G	A	SNP	FGF10	NM_004465	human	genbank	57_37b	-1	reviewed	missense	c.257	p.T86I	1.000	superfamily_Cytok_IL1_like,HMMSmart_FGF,HMMPfam_FGF	superfamily_Cytok_IL1_like,HMMSmart_FGF,HMMPfam_FGF,PatternScan_HBGF_FGF	-	no_errors
FGF18	8817	genome.wustl.edu	37	5	170847438	170847438	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	170847438	170847438	C	A	SNP	FGF18	NM_003862	human	genbank	57_37b	+1	reviewed	missense	c.60	p.F20L	1.000	NULL	superfamily_Cytok_IL1_like,HMMSmart_FGF,HMMPfam_FGF,PatternScan_HBGF_FGF	-	no_errors
FLNB	2317	genome.wustl.edu	37	3	58124245	58124245	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	58124245	58124245	T	G	SNP	FLNB	NM_001457	human	genbank	57_37b	+1	reviewed	missense	c.5098	p.F1700V	1.000	superfamily_Ig_E-set,HMMPfam_Filamin,HMMSmart_IG_FLMN	superfamily_Calponin-homology,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_CH,PatternScan_ACTININ_2,superfamily_Ig_E-set,HMMPfam_Filamin,HMMSmart_IG_FLMN	-	no_errors
FRRS1	391059	genome.wustl.edu	37	1	100195231	100195231	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	100195231	100195231	C	-	DEL	FRRS1	NM_001013660	human	genbank	57_37b	-1	validated	frame_shift_del	c.833	p.R278fs	1.000	HMMPfam_DOMON,HMMSmart_DoH	HMMPfam_Reeler,HMMPfam_DOMON,HMMSmart_DoH,HMMSmart_B561	(deletion:cds_exon[100195206,100195304])	no_errors
FSCN2	25794	genome.wustl.edu	37	17	79496124	79496125	+	Silent	DNP	TG	CC	CC	novel	unknown	TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	TG	TG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	79496124	79496125	TG	CC	SNP	FSCN2	NM_001077182	human	genbank	57_37b	+1	reviewed	silent	c.567-c.568	p.C189-p.D190H	0.831	superfamily_Actin-crosslinking proteins,HMMPfam_Fascin	superfamily_Actin-crosslinking proteins,HMMPfam_Fascin	-	
GATA3	2625	genome.wustl.edu	37	10	8115952	8115953	+	Frame_Shift_Ins	INS	-	-	CC	novel	unknown	TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	8115952	8115953	-	CC	INS	GATA3	NM_001002295	human	genbank	57_37b	+1	reviewed	frame_shift_ins	c.1301_1302	p.H435fs	1.000:0.946	NULL	superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00401,PatternScan_GATA_ZN_FINGER_1,HMMPfam_GATA	-	no_errors
GCDH	2639	genome.wustl.edu	37	19	13002750	13002750	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	13002750	13002750	G	C	SNP	GCDH	NM_000159	human	genbank	57_37b	+1	reviewed	missense	c.233	p.R78T	0.999	superfamily_Acyl-CoA dehydrogenase NM domain-like,HMMPfam_Acyl-CoA_dh_N	superfamily_Acyl-CoA dehydrogenase NM domain-like,HMMPfam_Acyl-CoA_dh_N,HMMPfam_Acyl-CoA_dh_M,PatternScan_ACYL_COA_DH_1,superfamily_Acyl-CoA dehydrogenase C-terminal domain-like,HMMPfam_Acyl-CoA_dh_1,PatternScan_ACYL_COA_DH_2	-	no_errors
GPR110	266977	genome.wustl.edu	37	6	46976980	46976980	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	46976980	46976980	C	A	SNP	GPR110	NM_153840	human	genbank	57_37b	-1	validated	missense	c.2191	p.D731Y	0.080	HMMPfam_7tm_2	superfamily_SEA domain,HMMPfam_SEA,HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2	-	no_errors
HEATR3	55027	genome.wustl.edu	37	16	50136311	50136311	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	50136311	50136311	G	C	SNP	HEATR3	NM_182922	human	genbank	57_37b	+1	provisional	missense	c.1885	p.A629P	0.974	superfamily_ARM repeat	superfamily_ARM repeat	-	no_errors
KIAA1804	84451	genome.wustl.edu	37	1	233490631	233490631	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	233490631	233490631	C	A	SNP	KIAA1804	NM_032435	human	genbank	57_37b	+1	validated	silent	c.1185	p.L395	0.998	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMPfam_Pkinase,HMMSmart_SM00220	superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_1,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMPfam_Pkinase,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
LAMA3	3909	genome.wustl.edu	37	18	21426463	21426463	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	21426463	21426463	C	-	DEL	LAMA3	NM_198129	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.3922	p.R1308fs	0.032	HMMSmart_SM00180,HMMPfam_Laminin_EGF,superfamily_EGF/Laminin,HMMSmart_SM00181,PatternScan_EGF_LAM_1	HMMSmart_SM00136,HMMPfam_Laminin_N,superfamily_Galactose-binding domain-like,HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin,PatternScan_EGF_1,PatternScan_EGF_LAM_1,HMMSmart_SM00181,HMMSmart_SM00281,HMMPfam_Laminin_B,PatternScan_EGF_2,HMMPfam_Laminin_I,HMMPfam_Laminin_II,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2,PatternScan_CHAPERONINS_CPN60	(deletion:cds_exon[21426261,21426472])	no_errors
LOC100287993	0	genome.wustl.edu	37	20	29611972	29611972	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	29611972	29611972	T	-	DEL	LOC100287993	XM_002344214	human	genbank	57_37b	-1	model	frame_shift_del	c.514	p.R172fs	0.000	NULL	NULL	(deletion:cds_exon[29611830,29612394])	no_errors
LRG1	116844	genome.wustl.edu	37	19	4538291	4538292	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	4538291	4538292	-	T	INS	LRG1	NM_052972	human	genbank	57_37b	-1	validated	frame_shift_ins	c.705_704	p.P236fs	0.012:0.019	superfamily_SSF52058	superfamily_SSF52058,HMMPfam_LRR_1,HMMSmart_LRR_TYP,HMMSmart_LRRCT	-	no_errors
LRRC10	376132	genome.wustl.edu	37	12	70004164	70004164	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	70004164	70004164	C	-	DEL	LRRC10	NM_201550	human	genbank	57_37b	-1	provisional	frame_shift_del	c.455	p.G152fs	1.000	superfamily_SSF52058	superfamily_SSF52058,HMMPfam_LRR_1	(deletion:cds_exon[70003785,70004618])	no_errors
MAGIX	79917	genome.wustl.edu	37	X	49021387	49021387	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	49021387	49021387	C	T	SNP	MAGIX	NM_024859	human	genbank	57_37b	+1	validated	silent	c.466	p.L156	0.327	superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228	superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228	-	no_errors
MICAL2	9645	genome.wustl.edu	37	11	12229617	12229617	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	12229617	12229617	G	A	SNP	MICAL2	NM_014632	human	genbank	57_37b	+1	provisional	missense	c.520	p.G174R	1.000	superfamily_FAD/NAD(P)-binding domain	superfamily_FAD/NAD(P)-binding domain,HMMPfam_FAD_binding_3,superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,HMMSmart_SM00033,superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM	-	no_errors
MRC1	4360	genome.wustl.edu	37	10	18155569	18155569	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	18155569	18155569	C	A	SNP	MRC1	NM_002438	human	genbank	57_37b	+1	validated	missense	c.1862	p.A621E	1.000	superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C	superfamily_Ricin B-like lectins,HMMSmart_SM00458,HMMPfam_Ricin_B_lectin,superfamily_Kringle-like,HMMSmart_SM00059,HMMPfam_fn2,PatternScan_FN2_1,superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C,PatternScan_C_TYPE_LECTIN_1	-	no_errors
MUC17	140453	genome.wustl.edu	37	7	100696407	100696407	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	100696407	100696407	G	A	SNP	MUC17	NM_001040105	human	genbank	57_37b	+1	provisional	missense	c.13244	p.R4415H	0.000	NULL	superfamily_EGF/Laminin,PatternScan_EGF_1,superfamily_SEA domain,HMMSmart_SM00200,HMMPfam_SEA	-	no_errors
MUC5B	727897	genome.wustl.edu	37	11	1257711	1257711	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	1257711	1257711	C	-	DEL	MUC5B	NM_002458	human	genbank	57_37b	+1	validated	frame_shift_del	c.2985	p.L996fs	1.000	HMMSmart_SM00216,HMMPfam_VWD	HMMSmart_SM00216,HMMPfam_VWD,HMMPfam_C8,superfamily_Serine proterase inhibitors,HMMPfam_TIL,HMMSmart_SM00214,HMMSmart_SM00215,superfamily_PMP inhibitors,PatternScan_VWFC_1,HMMPfam_VWC,HMMSmart_SM00041,HMMPfam_Cys_knot,PatternScan_CTCK_1	(deletion:cds_exon[1257616,1257792])	no_errors
NAIF1	203245	genome.wustl.edu	37	9	130825869	130825869	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	130825869	130825869	G	T	SNP	NAIF1	NM_197956	human	genbank	57_37b	-1	validated	silent	c.822	p.A274	1.000	NULL	NULL	-	no_errors
NELL1	4745	genome.wustl.edu	37	11	21250897	21250897	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	21250897	21250897	C	T	SNP	NELL1	NM_006157	human	genbank	57_37b	+1	reviewed	silent	c.1446	p.S482	0.001	HMMSmart_SM00179,HMMPfam_EGF_CA,HMMSmart_SM00181,superfamily_EGF/Laminin	HMMSmart_SM00210,HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_VWC,HMMSmart_SM00214,HMMSmart_SM00215,PatternScan_VWFC_1,HMMSmart_SM00179,HMMSmart_SM00181,superfamily_EGF/Laminin,PatternScan_EGF_CA,HMMPfam_EGF_CA,PatternScan_ASX_HYDROXYL,PatternScan_EGF_2,HMMPfam_EGF_2,PatternScan_EGF_1	-	no_errors
NINL	22981	genome.wustl.edu	37	20	25485550	25485550	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	25485550	25485550	C	A	SNP	NINL	NM_025176	human	genbank	57_37b	-1	validated	missense	c.682	p.V228F	0.985	superfamily_SSF47473,HMMSmart_EFh	superfamily_SSF47473,HMMSmart_EFh,HMMPfam_efhand,PatternScan_EF_HAND_1	-	no_errors
NR5A2	2494	genome.wustl.edu	37	1	200143157	200143159	+	In_Frame_Del	DEL	TGG	TGG	-	novel	unknown	TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	TGG	TGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	200143157	200143159	TGG	-	DEL	NR5A2	NM_205860	human	genbank	57_37b	+1	validated	in_frame_del	c.1445_1447	p.LD482in_frame_delH	1.000:1.000:1.000	superfamily_Nuclear receptor ligand-binding domain,HMMSmart_SM00430,HMMPfam_Hormone_recep	HMMSmart_SM00399,HMMPfam_zf-C4,superfamily_Glucocorticoid receptor-like (DNA-binding domain),PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,HMMSmart_SM00430,HMMPfam_Hormone_recep	(deletion:cds_exon[200143091,200143338])	no_errors
NR5A2	2494	genome.wustl.edu	37	1	200143161	200143173	+	Frame_Shift_Del	DEL	CTACACAATGTGT	CTACACAATGTGT	-	novel	unknown	TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	CTACACAATGTGT	CTACACAATGTGT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	200143161	200143173	CTACACAATGTGT	-	DEL	NR5A2	NM_205860	human	genbank	57_37b	+1	validated	frame_shift_del	c.1449_1461	p.D483fs	1.000:1.000:1.000:1.000:1.000:0.993:0.000:0.013:0.996:1.000:1.000:1.000:1.000	HMMPfam_Hormone_recep,HMMSmart_SM00430,superfamily_Nuclear receptor ligand-binding domain	HMMPfam_Hormone_recep,HMMSmart_SM00430,HMMPfam_zf-C4,HMMSmart_SM00399,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	(deletion:cds_exon[200143091,200143338])	no_errors
NYNRIN	0	genome.wustl.edu	37	14	24885799	24885799	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	24885799	24885799	C	T	SNP	NYNRIN	NM_025081	human	genbank	57_37b	+1	validated	missense	c.4844	p.S1615L	0.788	superfamily_Ribonuclease H-like	superfamily_DNA/RNA polymerases,superfamily_Ribonuclease H-like	-	no_errors
OR10G9	219870	genome.wustl.edu	37	11	123894140	123894140	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	123894140	123894140	G	A	SNP	OR10G9	NM_001001953	human	genbank	57_37b	+1	provisional	missense	c.421	p.A141T	0.000	superfamily_SSF81321,HMMPfam_7tm_1	PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1	-	no_errors
OR10Z1	128368	genome.wustl.edu	37	1	158577066	158577066	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	158577066	158577066	G	T	SNP	OR10Z1	NM_001004478	human	genbank	57_37b	+1	provisional	missense	c.838	p.V280L	1.000	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
PAPSS2	9060	genome.wustl.edu	37	10	89505676	89505676	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	89505676	89505676	C	A	SNP	PAPSS2	NM_001015880	human	genbank	57_37b	+1	reviewed	silent	c.1809	p.P603	1.000	HMMPfam_ATP-sulfurylase,superfamily_SSF52374	superfamily_SSF52540,HMMPfam_APS_kinase,superfamily_PUA-like,HMMPfam_ATP-sulfurylase,superfamily_SSF52374	-	no_errors
PCDHA11	56138	genome.wustl.edu	37	5	140250369	140250369	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140250369	140250369	G	A	SNP	PCDHA11	NM_018902	human	genbank	57_37b	+1	reviewed	missense	c.1681	p.A561T	0.995	superfamily_Cadherin-like,HMMSmart_SM00112,PatternScan_CADHERIN_1	superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors
PDE4DIP	9659	genome.wustl.edu	37	1	144877222	144877222	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	144877222	144877222	G	A	SNP	PDE4DIP	NM_014644	human	genbank	57_37b	-1	validated	missense	c.4465	p.R1489W	0.982	NULL	HMMPfam_Microtub_assoc	-	no_errors
PKHD1	5314	genome.wustl.edu	37	6	51484109	51484110	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	51484109	51484110	-	C	INS	PKHD1	NM_138694	human	genbank	57_37b	-1	reviewed	frame_shift_ins	c.11995_11994	p.W3998fs	0.961:0.735	NULL	superfamily_E set domains,HMMSmart_SM00429,HMMPfam_TIG,HMMSmart_SM00710,HMMPfam_G8,superfamily_Pectin lyase-like	-	no_errors
PRAMEF11	440560	genome.wustl.edu	37	1	12887458	12887458	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	12887458	12887458	C	A	SNP	PRAMEF11	ENST00000331684	human	ensembl	57_37b	-1	known	missense	c.399	p.Q133H	0.112	superfamily_SSF52047	superfamily_SSF52047	-	no_errors
PVRL3	25945	genome.wustl.edu	37	3	110845147	110845147	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	110845147	110845147	G	T	SNP	PVRL3	NM_015480	human	genbank	57_37b	+1	provisional	missense	c.1034	p.G345V	1.000	superfamily_Immunoglobulin	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMPfam_C2-set_2	-	no_errors
RELN	5649	genome.wustl.edu	37	7	103191642	103191642	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	103191642	103191642	G	T	SNP	RELN	NM_005045	human	genbank	57_37b	-1	reviewed	nonsense	c.6174	p.C2058*	1.000	NULL	HMMPfam_Reeler,superfamily_SSF57196,HMMSmart_EGF,HMMPfam_EGF_2,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_Sialidase	-	no_errors
RGSL1	353299	genome.wustl.edu	37	1	182442910	182442910	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	182442910	182442910	G	A	SNP	RGSL1	NM_001137669	human	genbank	57_37b	+1	validated	missense	c.664	p.V222I	0.000	NULL	superfamily_Regulator of G-protein signaling RGS	-	no_errors
RPAP2	79871	genome.wustl.edu	37	1	92789086	92789086	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	92789086	92789086	A	G	SNP	RPAP2	ENST00000370343	human	ensembl	57_37b	+1	known	silent	c.609	p.Q203	0.000	NULL	HMMPfam_RPAP2_Rtr1	-	no_errors
SEMA5A	9037	genome.wustl.edu	37	5	9202176	9202176	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	9202176	9202176	G	T	SNP	SEMA5A	NM_003966	human	genbank	57_37b	-1	reviewed	missense	c.823	p.R275S	0.975	superfamily_Sema,HMMPfam_Sema,HMMSmart_Sema	superfamily_Sema,HMMPfam_Sema,HMMSmart_Sema,HMMPfam_PSI,HMMSmart_PSI,superfamily_Plexin-like_fold,superfamily_TSP1,HMMSmart_TSP1,HMMPfam_TSP_1	-	no_errors
SPDYE1	285955	genome.wustl.edu	37	7	44047341	44047341	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	44047341	44047341	G	A	SNP	SPDYE1	NM_175064	human	genbank	57_37b	+1	validated	missense	c.985	p.A329T	0.393	NULL	NULL	-	no_errors
SULF1	23213	genome.wustl.edu	37	8	70550743	70550743	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	70550743	70550743	C	A	SNP	SULF1	NM_001128204	human	genbank	57_37b	+1	validated	missense	c.2291	p.S764Y	0.918	superfamily_Alkaline_phosphatase_core	PatternScan_SULFATASE_2,HMMPfam_Sulfatase,superfamily_Alkaline_phosphatase_core,PatternScan_SULFATASE_1	-	no_errors
TAF1C	9013	genome.wustl.edu	37	16	84217059	84217059	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	84217059	84217059	C	T	SNP	TAF1C	NM_005679	human	genbank	57_37b	-1	reviewed	missense	c.275	p.R92Q	0.000	NULL	NULL	-	no_errors
TRMT2A	27037	genome.wustl.edu	37	22	20103700	20103700	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	20103700	20103700	T	-	DEL	TRMT2A	NM_022727	human	genbank	57_37b	-1	validated	frame_shift_del	c.460	p.R154fs	1.000	superfamily_RNA-binding domain RBD	superfamily_RNA-binding domain RBD,superfamily_S-adenosyl-L-methionine-dependent methyltransferases,HMMPfam_Methyltransf_11	(deletion:cds_exon[20103561,20104135])	no_errors
USP20	10868	genome.wustl.edu	37	9	132623252	132623253	+	Frame_Shift_Del	DEL	CC	CC	-	novel	unknown	TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	CC	CC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	132623252	132623253	CC	-	DEL	USP20	NM_001008563	human	genbank	57_37b	+1	validated	frame_shift_del	c.367_368	p.P123fs	1.000:1.000	NULL	HMMPfam_zf-UBP,superfamily_SSF54001,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2,HMMSmart_DUSP	(deletion:cds_exon[132623216,132623312])	no_errors
WNT7A	7476	genome.wustl.edu	37	3	13896104	13896104	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	13896104	13896104	G	A	SNP	WNT7A	NM_004625	human	genbank	57_37b	-1	reviewed	silent	c.495	p.V165	1.000	HMMPfam_wnt,HMMSmart_SM00097	HMMPfam_wnt,HMMSmart_SM00097,PatternScan_WNT1	-	no_errors
ZNF556	80032	genome.wustl.edu	37	19	2878290	2878290	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	2878290	2878290	G	A	SNP	ZNF556	NM_024967	human	genbank	57_37b	+1	provisional	missense	c.1334	p.R445K	0.991	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
