Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
ACTRT2	140625	genome.wustl.edu	37	1	2938676	2938676	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080431.4	+1	reviewed	p.A142	0.029	74	0%	44	45.5%	0	-	-	-	-	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain
DNAJC11	55735	genome.wustl.edu	37	1	6704719	6704719	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018198.3	-1	validated	p.G332	0.997	122	0%	110	47.3%	5	60%	-	-	-	NULL
RERE	473	genome.wustl.edu	37	1	8716051	8716051	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042681.1	-1	reviewed	p.D102	0.980	427	0%	471	42.5%	1	0%	-	-	-	NULL
KIF1B	23095	genome.wustl.edu	37	1	10425242	10425242	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015074.3	+1	reviewed	p.R1438L	1.000	64	0%	92	44.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MASP2	10747	genome.wustl.edu	37	1	11087647	11087647	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006610.2	-1	reviewed	p.K452	0.037	79	0%	137	40.9%	0	-	-	-	-	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
CLCN6	1185	genome.wustl.edu	37	1	11866361	11866361	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001286.2	+1	reviewed	p.W14C	0.998	15	0.000	7	0.571	1	0%	unknown(0)	deleterious(0)	-	NULL
ARHGEF19	128272	genome.wustl.edu	37	1	16534664	16534664	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153213.3	-1	provisional	p.A157T	0.000	72	0%	58	37.9%	3	100%	benign(0)	tolerated(1)	-	NULL
TAS1R2	80834	genome.wustl.edu	37	1	19183865	19183865	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152232.2	-1	validated	p.M148T	0.000	149	0%	114	36.8%	0	-	benign(0)	tolerated(0.31)	neutral(0.027)	HMMPfam_ANF_receptor,superfamily_SSF53822
RHCE	6006	genome.wustl.edu	37	1	25735283	25735283	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020485.3	-1	reviewed	p.S76G	0.914	203	0%	185	41.6%	0	-	possibly_damaging(0.796)	tolerated(0.09)	deleterious(0.595)	HMMPfam_Ammonium_transp,superfamily_Ammonium ransporter (Pfam 00909)
ZBTB8A	653121	genome.wustl.edu	37	1	33065978	33065979	+	In_Frame_Ins	INS	-	-	GAA	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040441.1	+1	validated	p.432in_frame_insE	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
C1orf94	84970	genome.wustl.edu	37	1	34663243	34663243	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134734.1	+1	validated	p.K246N	0.402	66	0%	59	40.7%	0	-	probably_damaging(0.998)	tolerated(0.06)	deleterious(0.797)	NULL
NCDN	23154	genome.wustl.edu	37	1	36028195	36028195	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001014839.1	+1	reviewed	p.P449L	1.000	104	0%	68	42.6%	3	0%	benign(0.001)	tolerated(0.28)	neutral(0.032)	HMMPfam_Neurochondrin
THRAP3	9967	genome.wustl.edu	37	1	36754986	36754986	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005119.3	+1	validated	p.V456fs	1.000	-	-	-	-	-	-	-	-	-	NULL
MACF1	23499	genome.wustl.edu	37	1	39749189	39749189	+	Splice_Site	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012090.3	+1	reviewed	e8+2	1.000	348	0%	375	41.6%	1	100%	-	-	-	-
MACF1	23499	genome.wustl.edu	37	1	39909116	39909116	+	Splice_Site	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033044.2	+1	reviewed	e44-2	1.000	189	0%	216	41.7%	0	-	-	-	-	-
TOE1	114034	genome.wustl.edu	37	1	45807642	45807643	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025077.3	+1	validated	p.V120fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_CAF1,superfamily_RNaseH_fold
SLC5A9	200010	genome.wustl.edu	37	1	48688536	48688536	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135181.1	+1	validated	p.I43T	0.948	134	0%	96	43.8%	0	-	benign(0.033)	deleterious(0.04)	neutral(0.350)	NULL
EFCAB7	84455	genome.wustl.edu	37	1	64038143	64038143	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032437.2	+1	validated	p.R616*	0.005	187	0%	197	33%	9	44.4%	-	-	-	NULL
TTLL7	79739	genome.wustl.edu	37	1	84356121	84356121	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024686.4	-1	validated	p.R751H	1.000	134	0%	127	40.2%	8	50%	possibly_damaging(0.697)	tolerated(0.11)	deleterious(0.522)	NULL
ARHGAP29	9411	genome.wustl.edu	37	1	94650464	94650464	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004815.3	-1	validated	p.C691	0.998	308	0%	288	39.2%	2	50%	-	-	-	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP
LRIF1	55791	genome.wustl.edu	37	1	111495090	111495090	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018372.3	-1	validated	p.G139A	1.000	216	0%	183	46.4%	1	100%	benign(0.168)	tolerated(0.08)	neutral(0.315)	NULL
DENND2D	79961	genome.wustl.edu	37	1	111737213	111737213	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024901.3	-1	provisional	p.A261T	1.000	70	0%	79	44.3%	9	44.4%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_DENN,HMMSmart_SM00799
RAP1A	5906	genome.wustl.edu	37	1	112240089	112240089	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010935.1	+1	reviewed	p.C51*	1.000	452	0%	464	48.3%	4	75%	-	-	-	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
NOTCH2	4853	genome.wustl.edu	37	1	120497741	120497741	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024408.2	-1	reviewed	p.H714R	0.993	212	0%	189	40.2%	0	-	benign(0)	deleterious(0.03)	neutral(0.364)	HMMSmart_EGF_CA,superfamily_SSF57196
SLC27A3	11000	genome.wustl.edu	37	1	153751753	153751753	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000368659	+1	known	p.Q19R	0.001	125	0%	115	42.6%	0	-	-	-	-	NULL
ADAR	103	genome.wustl.edu	37	1	154569289	154569289	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001111.3	-1	reviewed	p.H754	0.922	117	0%	110	35.5%	3	0%	-	-	-	HMMPfam_dsrm,HMMSmart_SM00358,superfamily_dsRNA-binding domain-like
ZBTB7B	51043	genome.wustl.edu	37	1	154987270	154987270	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015872.2	+1	validated	p.Y45C	1.000	63	0%	46	43.5%	0	-	probably_damaging(0.956)	deleterious(0)	deleterious(0.844)	HMMSmart_BTB,superfamily_BTB/POZ_fold,HMMPfam_BTB
RXRG	6258	genome.wustl.edu	37	1	165378891	165378891	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006917.3	-1	reviewed	p.R317H	1.000	279	0%	207	38.2%	2	100%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_Hormone_recep,HMMSmart_HOLI,superfamily_Str_ncl_receptor
DUSP27	92235	genome.wustl.edu	37	1	167097007	167097007	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080426.1	+1	provisional	p.D880G	0.000	228	0%	232	44.8%	0	-	benign(0)	deleterious(0.03)	neutral(0.364)	NULL
PRRC2C	23215	genome.wustl.edu	37	1	171506519	171506519	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015172.3	+1	validated	p.E802G	1.000	102	0%	114	40.4%	0	-	unknown(0)	-	-	NULL
AXDND1	126859	genome.wustl.edu	37	1	179338076	179338076	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144696.4	+1	validated	p.L80S	1.000	185	0%	167	22.8%	0	-	unknown(0)	deleterious(0.03)	-	NULL
SMG7	9887	genome.wustl.edu	37	1	183498025	183498025	+	Splice_Site	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173156.2	+1	validated	e7-2	0.998	411	0%	454	42.7%	0	-	-	-	-	-
NFASC	23114	genome.wustl.edu	37	1	204970400	204970400	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000367172	+1	known	p.V1148A	1.000	228	0%	195	15.9%	0	-	benign(0.156)	deleterious(0.01)	neutral(0.420)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
PFKFB2	5208	genome.wustl.edu	37	1	207235990	207235990	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006212.2	+1	reviewed	p.R79	0.056	325	0%	294	40.1%	0	-	-	-	-	HMMPfam_6PF2K,superfamily_P-loop containing nucleoside triphosphate hydrolases
PTPN14	5784	genome.wustl.edu	37	1	214558058	214558058	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005401.4	-1	reviewed	p.N380	0.914	178	0%	138	45.7%	0	-	-	-	-	NULL
TGFB2	7042	genome.wustl.edu	37	1	218520253	218520253	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135599.1	+1	validated	p.I70	1.000	54	0%	33	30.3%	0	-	-	-	-	HMMPfam_TGFb_propeptide
DISP1	84976	genome.wustl.edu	37	1	223178499	223178499	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032890.2	+1	reviewed	p.P1254A	0.001	133	0%	125	40.8%	1	0%	benign(0)	tolerated(0.06)	neutral(0.323)	NULL
PARP1	142	genome.wustl.edu	37	1	226549732	226549732	+	Silent	SNP	T	T	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001618.3	-1	reviewed	p.V967	0.253	176	0%	167	46.1%	59	42.3%	-	-	-	HMMPfam_PARP,superfamily_ADP-ribosylation
OBSCN	84033	genome.wustl.edu	37	1	228466419	228466419	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098623.1	+1	reviewed	p.R2297W	0.980	61	0%	60	23.3%	0	-	probably_damaging(1)	-	-	HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
OBSCN	84033	genome.wustl.edu	37	1	228471412	228471412	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098623.1	+1	reviewed	p.S2982	0.967	59	0%	27	37%	0	-	-	-	-	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
AGT	183	genome.wustl.edu	37	1	230839068	230839068	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000029.3	-1	reviewed	p.N426S	0.939	210	0%	182	36.3%	7	28.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Serpin,HMMSmart_SM00093,superfamily_Serpins
RYR2	6262	genome.wustl.edu	37	1	237586435	237586435	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001035.2	+1	reviewed	p.R298C	0.940	211	0%	203	40.9%	0	-	probably_damaging(0.99)	-	-	HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMSmart_SM00472
RYR2	6262	genome.wustl.edu	37	1	237798238	237798238	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001035.2	+1	reviewed	p.S2246	0.031	206	0.5%	218	33.9%	0	-	-	-	-	HMMPfam_RYDR_ITPR
ZNF238	10472	genome.wustl.edu	37	1	244217424	244217424	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_205768.2	+1	validated	p.Y116	1.000	165	0%	152	45.4%	1	100%	-	-	-	HMMSmart_BTB,superfamily_BTB/POZ_fold,HMMPfam_BTB
AHCTF1	25909	genome.wustl.edu	37	1	247025434	247025434	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015446.4	-1	validated	p.S1188T	1.000	230	0%	260	25.8%	0	-	probably_damaging(0.991)	deleterious(0.04)	deleterious(0.793)	NULL
OR2M4	26245	genome.wustl.edu	37	1	248402986	248402986	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017504.1	+1	provisional	p.Y252	0.375	225	0%	224	46.4%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
C2orf90	391343	genome.wustl.edu	37	2	905929	905929	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000434864	-1	known	p.Q6P	0.103	737	0%	684	22.7%	0	-	-	-	-	NULL
PXDN	7837	genome.wustl.edu	37	2	1652304	1652304	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012293.1	-1	validated	p.R1083Q	1.000	84	0%	55	43.6%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_An_peroxidase,superfamily_Heme-dependent peroxidases
RDH14	57665	genome.wustl.edu	37	2	18736490	18736490	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020905.3	-1	validated	p.D326	1.000	413	0%	308	44.2%	13	38.4%	-	-	-	NULL
NT5C1B	93034	genome.wustl.edu	37	2	18768849	18768849	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001002006.1	-1	validated	p.G14R	0.010	486	0%	448	42.9%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
PUM2	23369	genome.wustl.edu	37	2	20478390	20478390	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015317.1	-1	provisional	p.P637	1.000	313	0.3%	336	41.4%	0	-	-	-	-	NULL
APOB	338	genome.wustl.edu	37	2	21258578	21258578	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000384.2	-1	reviewed	p.T232	0.006	175	0%	176	33.5%	0	-	-	-	-	HMMPfam_Vitellogenin_N,HMMSmart_SM00638,superfamily_Lipovitellin-phosvitin complex beta-sheet shell regions
NCOA1	8648	genome.wustl.edu	37	2	24951195	24951195	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003743.4	+1	reviewed	p.Q912	0.876	187	0%	179	38.5%	0	-	-	-	-	NULL
PREB	10113	genome.wustl.edu	37	2	27354539	27354539	+	Splice_Site	SNP	C	C	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013388.4	-1	reviewed	e8+1	1.000	108	0%	96	53.1%	0	-	-	-	-	-
CAPN14	440854	genome.wustl.edu	37	2	31401383	31401383	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145122.1	-1	validated	p.L591	0.852	302	0%	232	44.8%	0	-	-	-	-	superfamily_EF-hand
BIRC6	57448	genome.wustl.edu	37	2	32690174	32690174	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016252.3	+1	reviewed	p.A1766	0.997	394	0%	413	44.1%	0	-	-	-	-	NULL
CCDC75	253635	genome.wustl.edu	37	2	37316894	37316894	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_174931.2	+1	validated	p.E53D	0.999	233	0%	278	44.2%	3	0%	benign(0.002)	tolerated(0.51)	neutral(0.009)	NULL
PRKD3	23683	genome.wustl.edu	37	2	37483991	37483991	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005813.3	-1	reviewed	p.L743V	0.969	265	0%	227	42.7%	3	100%	possibly_damaging(0.498)	tolerated(0.82)	neutral(0.167)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
CDKL4	344387	genome.wustl.edu	37	2	39406450	39406450	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001009565.1	-1	provisional	p.M269V	1.000	265	0%	313	33.5%	0	-	benign(0.406)	tolerated(0.09)	neutral(0.427)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
TMEM178	130733	genome.wustl.edu	37	2	39931240	39931240	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000378734	+1	known	p.G95S	0.994	244	0%	181	43.1%	8	50%	unknown(0)	deleterious(0)	-	NULL
NRXN1	9378	genome.wustl.edu	37	2	50724632	50724632	+	Silent	SNP	A	A	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135659.1	-1	reviewed	p.P946	0.997	295	0%	345	43.8%	0	-	-	-	-	superfamily_ConA_like_lec_gl
EML6	400954	genome.wustl.edu	37	2	55071257	55071257	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039753.2	+1	validated	p.E307	1.000	142	0%	131	37.4%	0	-	-	-	-	superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase
EGR4	1961	genome.wustl.edu	37	2	73519307	73519307	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001965.3	-1	validated	p.S247R	1.000	29	0%	18	44.4%	1	100%	possibly_damaging(0.839)	deleterious(0)	deleterious(0.765)	NULL
SUCLG1	8802	genome.wustl.edu	37	2	84652698	84652699	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003849.3	-1	reviewed	p.I286fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_Ligase_CoA,superfamily_CoA_ligase
ADRA2B	151	genome.wustl.edu	37	2	96780781	96780781	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000409345	-1	known	p.L370	1.000	162	0%	131	30.5%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
SNRNP200	23020	genome.wustl.edu	37	2	96954406	96954406	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014014.3	-1	reviewed	p.T1085A	0.998	164	0%	148	39.9%	4	25%	benign(0.039)	tolerated(0.1)	neutral(0.288)	HMMPfam_Sec63,HMMSmart_SM00611
SLC9A4	389015	genome.wustl.edu	37	2	103141593	103141593	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001011552.3	+1	validated	p.H643	0.993	261	0%	236	47.5%	1	100%	-	-	-	NULL
ACOXL	55289	genome.wustl.edu	37	2	111556277	111556277	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142807.1	+1	validated	p.L146F	1.000	272	0%	270	44.4%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Acyl-CoA_dh_M,superfamily_Acyl-CoA dehydrogenase NM domain-like
ANAPC1	64682	genome.wustl.edu	37	2	112549975	112549975	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022662.2	-1	validated	p.H1559R	1.000	244	0%	227	30.4%	2	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
CKAP2L	150468	genome.wustl.edu	37	2	113496467	113496467	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152515.3	-1	validated	p.K724R	0.913	114	0%	116	37.9%	0	-	benign(0.006)	deleterious(0.02)	neutral(0.383)	NULL
CLASP1	23332	genome.wustl.edu	37	2	122187687	122187687	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015282.2	-1	validated	p.R660Q	0.941	118	0%	133	42.1%	1	0%	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	NULL
MYO7B	4648	genome.wustl.edu	37	2	128383034	128383034	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080527.1	+1	provisional	p.S1354N	0.999	30	0%	12	33.3%	0	-	benign(0.058)	tolerated(0.82)	neutral(0.004)	superfamily_Second domain of FERM,HMMSmart_SM00295
UGGT1	56886	genome.wustl.edu	37	2	128938531	128938531	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020120.3	+1	validated	p.R1323Q	1.000	359	0%	378	44.2%	1	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_Nucleotide-diphospho-sugar transferases
FAM123C	205147	genome.wustl.edu	37	2	131520726	131520726	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105193.1	+1	validated	p.G361S	0.792	44	0%	33	48.5%	0	-	benign(0.008)	deleterious(0.03)	neutral(0.364)	HMMPfam_WTX
LCT	3938	genome.wustl.edu	37	2	136594400	136594400	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002299.2	-1	reviewed	p.R114W	0.951	232	0%	243	38.7%	1	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_Glyco_hydro_cat
SPOPL	339745	genome.wustl.edu	37	2	139322338	139322338	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001664.2	+1	validated	p.E300K	1.000	347	0%	374	40.9%	1	0%	possibly_damaging(0.619)	tolerated(0.12)	deleterious(0.476)	NULL
ACVR2A	92	genome.wustl.edu	37	2	148676094	148676094	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001616.3	+1	reviewed	p.G299R	1.000	226	0%	236	41.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
EPC2	26122	genome.wustl.edu	37	2	149542570	149542571	+	Frame_Shift_Ins	INS	-	-	GT	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015630.3	+1	validated	p.E785fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_E_Pc_C
NEB	4703	genome.wustl.edu	37	2	152346519	152346519	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004543.4	-1	reviewed	p.V6601A	0.887	724	0%	885	42.1%	2	100%	benign(0.011)	-	-	superfamily_SH3-domain
PKP4	8502	genome.wustl.edu	37	2	159477615	159477615	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003628.3	+1	reviewed	p.S132A	1.000	218	0%	192	44.8%	3	0%	probably_damaging(0.975)	tolerated(0.12)	deleterious(0.677)	NULL
BAZ2B	29994	genome.wustl.edu	37	2	160181443	160181481	+	Frame_Shift_Del	DEL	TTTCCATTTCAGTCAGAATCATACTAAAGAAAATAATGT	TTTCCATTTCAGTCAGAATCATACTAAAGAAAATAATGT	-	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	TTTCCATTTCAGTCAGAATCATACTAAAGAAAATAATGT	TTTCCATTTCAGTCAGAATCATACTAAAGAAAATAATGT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013450.2	-1	validated	p.M2071fs	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.998:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.996	-	-	-	-	-	-	-	-	-	HMMPfam_Bromodomain,HMMSmart_SM00297,superfamily_Bromodomain
DLX2	1746	genome.wustl.edu	37	2	172967067	172967067	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004405.3	-1	reviewed	p.Y67C	1.000	92	0%	81	24.7%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
SESTD1	91404	genome.wustl.edu	37	2	179981498	179981498	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178123.4	-1	validated	p.E515G	1.000	274	0%	222	34.2%	1	100%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SPEC,superfamily_Spectrin
NCKAP1	10787	genome.wustl.edu	37	2	183822249	183822249	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_205842.1	-1	validated	p.G659R	1.000	540	0%	516	42.4%	3	100%	probably_damaging(0.999)	tolerated(0.2)	deleterious(0.539)	HMMPfam_Nckap1
FZD5	7855	genome.wustl.edu	37	2	208632956	208632956	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003468.3	-1	reviewed	p.P170S	0.000	13	0%	14	42.9%	0	-	benign(0)	tolerated(0.41)	neutral(0.015)	NULL
CXCR1	3577	genome.wustl.edu	37	2	219029605	219029605	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000634.2	-1	reviewed	p.C110	1.000	261	0%	248	41.5%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
STK16	8576	genome.wustl.edu	37	2	220111502	220111502	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008910.2	+1	validated	p.R70	1.000	251	0%	203	42.4%	9	44.4%	-	-	-	superfamily_Kinase_like,HMMPfam_Pkinase
CUL3	8452	genome.wustl.edu	37	2	225422409	225422409	+	Silent	SNP	T	T	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000436172	-1	known	p.K98Q	1.000	280	0%	350	40.9%	0	-	-	-	-	HMMPfam_Cullin,superfamily_Cullin repeat
SP140L	93349	genome.wustl.edu	37	2	231223780	231223780	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138402.4	+1	provisional	p.A124	0.000	311	0%	325	40.9%	0	-	-	-	-	HMMPfam_Sp100
NGEF	25791	genome.wustl.edu	37	2	233839402	233839402	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019850.2	-1	validated	p.R67C	0.891	715	0%	770	40.6%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
BOK	666	genome.wustl.edu	37	2	242501798	242501798	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032515.3	+1	reviewed	p.R86S	1.000	39	0%	31	25.8%	5	20%	probably_damaging(0.996)	tolerated(0.53)	deleterious(0.469)	HMMPfam_Bcl-2,HMMSmart_BCL,superfamily_SSF56854
IQSEC1	9922	genome.wustl.edu	37	3	12977029	12977029	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014869.4	-1	validated	p.R510H	1.000	187	0.5%	177	42.4%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FBLN2	2199	genome.wustl.edu	37	3	13661291	13661291	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004019.1	+1	reviewed	p.F705	0.884	312	0%	276	45.3%	4	25%	-	-	-	HMMSmart_SM00181,PatternScan_EGF_2,superfamily_EGF/Laminin
BTD	686	genome.wustl.edu	37	3	15686713	15686713	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000060.2	+1	reviewed	p.H450	0.991	254	0%	233	44.2%	1	100%	-	-	-	NULL
MLH1	4292	genome.wustl.edu	37	3	37055974	37055974	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000456676	+1	known	p.M235T	0.926	175	0%	177	37.9%	1	0%	-	-	-	HMMPfam_DNA_mis_repair,superfamily_Ribosomal protein S5 domain 2-like
SCN5A	6331	genome.wustl.edu	37	3	38628962	38628962	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099404.1	-1	reviewed	p.V789I	1.000	341	0%	274	43.8%	0	-	possibly_damaging(0.882)	deleterious(0)	deleterious(0.789)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
ULK4	54986	genome.wustl.edu	37	3	41795976	41795976	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017886.2	-1	validated	p.F733S	1.000	207	0%	243	45.3%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM-type_fold
TMIE	259236	genome.wustl.edu	37	3	46751073	46751074	+	In_Frame_Ins	INS	-	-	AAG	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_147196.2	+1	reviewed	p.126in_frame_insK	0.011:0.074	-	-	-	-	-	-	-	-	-	NULL
BSN	8927	genome.wustl.edu	37	3	49698151	49698151	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003458.3	+1	reviewed	p.L2958R	1.000	21	0%	13	76.9%	0	-	unknown(0)	-	-	NULL
RBM6	10180	genome.wustl.edu	37	3	50098909	50098909	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005777.2	+1	validated	p.Y790N	1.000	395	0%	473	44.4%	21	33.3%	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	NULL
SLC38A3	10991	genome.wustl.edu	37	3	50256142	50256142	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006841.4	+1	validated	p.L385P	1.000	115	0%	70	51.4%	0	-	-	-	-	HMMPfam_Aa_trans
GNAI2	2771	genome.wustl.edu	37	3	50293670	50293670	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002070.2	+1	reviewed	p.T171A	1.000	134	0%	109	37.6%	33	30.3%	benign(0.253)	deleterious(0)	deleterious(0.471)	HMMPfam_G-alpha,superfamily_Transducin (alpha subunit) insertion domain,HMMSmart_SM00275,superfamily_P-loop containing nucleoside triphosphate hydrolases
ROBO2	6092	genome.wustl.edu	37	3	77530314	77530314	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002942.3	+1	reviewed	p.V204A	0.999	378	0%	387	36.4%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
DZIP3	9666	genome.wustl.edu	37	3	108365482	108365482	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014648.3	+1	validated	p.I593T	1.000	251	0%	210	39.5%	0	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
GUCA1C	9626	genome.wustl.edu	37	3	108635044	108635044	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005459.3	-1	validated	p.N124	0.017	308	0%	310	41.3%	0	-	-	-	-	superfamily_EF-hand
ZNF148	7707	genome.wustl.edu	37	3	124951269	124951269	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021964.2	-1	validated	p.S767	1.000	106	0%	104	47.1%	2	100%	-	-	-	NULL
C3orf27	23434	genome.wustl.edu	37	3	128292335	128292335	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007354.1	-1	provisional	p.R80*	0.000	84	0%	85	42.4%	0	-	-	-	-	NULL
TOPBP1	11073	genome.wustl.edu	37	3	133337254	133337254	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007027.3	-1	reviewed	p.D1132G	1.000	153	0%	155	19.4%	2	50%	benign(0.102)	deleterious(0)	neutral(0.453)	NULL
TOPBP1	11073	genome.wustl.edu	37	3	133377934	133377934	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007027.3	-1	reviewed	p.K49E	0.035	475	0%	389	41.9%	0	-	benign(0.004)	tolerated(0.5)	neutral(0.010)	NULL
ARMC8	25852	genome.wustl.edu	37	3	137947820	137947820	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015396.3	+1	validated	p.Y152N	1.000	159	0%	151	45%	4	75%	possibly_damaging(0.918)	tolerated(0.29)	neutral(0.398)	superfamily_ARM-type_fold
ZBTB38	253461	genome.wustl.edu	37	3	141164409	141164409	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080412.2	+1	validated	p.H1060R	1.000	150	0%	132	39.4%	3	33.3%	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ATR	545	genome.wustl.edu	37	3	142231227	142231227	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001184.3	-1	reviewed	p.L1576R	1.000	347	0%	376	45.2%	1	0%	possibly_damaging(0.696)	deleterious(0.03)	deleterious(0.614)	superfamily_ARM repeat
TM4SF4	7104	genome.wustl.edu	37	3	149205527	149205527	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004617.2	+1	reviewed	p.Y129C	1.000	198	0%	174	44.3%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_L6_membrane
P2RY12	64805	genome.wustl.edu	37	3	151056149	151056149	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022788.3	-1	reviewed	p.L162P	1.000	203	0%	253	40.3%	0	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_7tm_1,superfamily_SSF81321
P2RY1	5028	genome.wustl.edu	37	3	152554678	152554678	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002563.2	+1	reviewed	p.G369	0.998	16	0%	21	47.6%	0	-	-	-	-	NULL
MECOM	2122	genome.wustl.edu	37	3	168807953	168807953	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000494292	-1	known	p.E1070G	1.000	366	0%	351	40.7%	24	75%	benign(0.059)	deleterious(0)	neutral(0.449)	NULL
SLC7A14	57709	genome.wustl.edu	37	3	170198888	170198888	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020949.2	-1	validated	p.A395T	1.000	64	0%	48	37.5%	0	-	possibly_damaging(0.625)	deleterious(0.03)	deleterious(0.583)	HMMPfam_AA_permease
PIK3CA	5290	genome.wustl.edu	37	3	178916938	178916940	+	In_Frame_Del	DEL	GAA	GAA	-	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	GAA	GAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006218.2	+1	reviewed	p.E110in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	superfamily_SSF54236
USP13	8975	genome.wustl.edu	37	3	179483543	179483543	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003940.2	+1	validated	p.S774G	0.990	458	0.2%	421	40.4%	1	100%	benign(0)	tolerated(0.43)	neutral(0.013)	HMMPfam_UCH,superfamily_SSF54001
ATP11B	23200	genome.wustl.edu	37	3	182603775	182603775	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014616.1	+1	validated	p.F898L	1.000	741	0.3%	826	27.1%	0	-	possibly_damaging(0.946)	tolerated(0.3)	neutral(0.419)	NULL
RFC4	5984	genome.wustl.edu	37	3	186507846	186507846	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002916.3	-1	reviewed	p.D335G	0.762	308	0%	283	50.5%	20	65%	benign(0.386)	deleterious(0.03)	deleterious(0.488)	superfamily_Pol_clamp_load_C,HMMPfam_Rep_fac_C
LPP	4026	genome.wustl.edu	37	3	188590502	188590502	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005578.3	+1	reviewed	p.R554H	1.000	315	0%	280	42.9%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_LIM,HMMSmart_SM00132,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
TP63	8626	genome.wustl.edu	37	3	189612035	189612035	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003722.4	+1	reviewed	p.A596V	1.000	205	0%	132	35.6%	0	-	benign(0.009)	tolerated(0.97)	neutral(0.001)	HMMSmart_SM00454,superfamily_SAM/Pointed domain,HMMPfam_SAM_2
RNF168	165918	genome.wustl.edu	37	3	196229774	196229774	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152617.2	-1	provisional	p.R91G	0.733	175	0%	176	48.3%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
SENP5	205564	genome.wustl.edu	37	3	196612430	196612430	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152699.4	+1	validated	p.S126	0.972	109	0%	80	42.5%	0	-	-	-	-	NULL
FAM53A	152877	genome.wustl.edu	37	4	1643215	1643215	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001013622.3	-1	validated	p.T334	0.022	217	0%	184	42.9%	0	-	-	-	-	NULL
NCAPG	64151	genome.wustl.edu	37	4	17832669	17832669	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022346.3	+1	validated	p.V605A	1.000	531	0%	481	41.2%	2	50%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_ARM-type_fold
TLR6	10333	genome.wustl.edu	37	4	38830385	38830385	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006068.3	-1	validated	p.V237A	0.002	218	0%	177	39%	0	-	possibly_damaging(0.737)	tolerated(0.42)	neutral(0.284)	superfamily_SSF52058
YIPF7	285525	genome.wustl.edu	37	4	44624497	44624497	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182592.2	-1	validated	p.Q259	0.995	98	0%	106	53.8%	0	-	-	-	-	HMMPfam_Yip1
KDR	3791	genome.wustl.edu	37	4	55953784	55953784	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002253.2	-1	reviewed	p.A1218P	1.000	307	0%	260	43.8%	2	0%	benign(0.01)	tolerated(0.3)	neutral(0.029)	NULL
TECRL	253017	genome.wustl.edu	37	4	65147236	65147236	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010874.4	-1	validated	p.T292A	1.000	239	0%	214	42.5%	0	-	probably_damaging(0.998)	tolerated(0.28)	deleterious(0.506)	HMMPfam_Steroid_dh
UGT2B11	10720	genome.wustl.edu	37	4	69870634	69870634	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000381096	-1	known	p.K510N	0.006	862	0%	809	28.8%	0	-	-	-	-	HMMPfam_UDPGT
UGT2B28	54490	genome.wustl.edu	37	4	70156437	70156437	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_053039.1	+1	provisional	p.M406I	1.000	361	0%	272	75.7%	0	-	benign(0.087)	tolerated(0.08)	neutral(0.306)	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
SHROOM3	57619	genome.wustl.edu	37	4	77675759	77675759	+	Nonsense_Mutation	SNP	C	C	T	rs61739939	byFrequency	TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020859.3	+1	validated	p.R1375*	0.000	47	0%	38	15.8%	1	0%	-	-	-	NULL
SHROOM3	57619	genome.wustl.edu	37	4	77677830	77677830	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020859.3	+1	validated	p.S1646	0.000	181	0.6%	189	40.7%	3	66.6%	-	-	-	NULL
PLAC8	51316	genome.wustl.edu	37	4	84028966	84028966	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130715.1	-1	validated	p.C37S	1.000	53	0%	70	51.4%	1	100%	possibly_damaging(0.513)	tolerated(0.13)	neutral(0.425)	HMMPfam_PLAC8
HERC5	51191	genome.wustl.edu	37	4	89415462	89415462	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016323.2	+1	reviewed	p.E808	1.000	318	0%	325	40.3%	3	33.3%	-	-	-	HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain
SMARCAD1	56916	genome.wustl.edu	37	4	95147443	95147443	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128429.1	+1	validated	p.I122V	1.000	151	0%	152	52.6%	0	-	benign(0.222)	tolerated(0.51)	neutral(0.031)	NULL
EMCN	51705	genome.wustl.edu	37	4	101396210	101396210	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016242.3	-1	validated	p.T82A	0.001	249	0%	262	45%	1	0%	probably_damaging(0.967)	deleterious(0)	deleterious(0.853)	HMMPfam_Endomucin
ARSJ	79642	genome.wustl.edu	37	4	114824014	114824014	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024590.3	-1	validated	p.T406A	1.000	200	0%	171	45.6%	0	-	benign(0.056)	tolerated(0.84)	neutral(0.004)	HMMPfam_Sulfatase,superfamily_Alkaline phosphatase-like
LRBA	987	genome.wustl.edu	37	4	151765332	151765332	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006726.2	-1	validated	p.I1497V	0.978	131	0%	103	42.7%	0	-	benign(0.055)	tolerated(0.66)	neutral(0.006)	superfamily_ARM repeat
KIAA0922	23240	genome.wustl.edu	37	4	154525123	154525123	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015196.3	+1	validated	p.K986*	0.992	67	0%	60	48.3%	1	100%	-	-	-	NULL
DCHS2	54798	genome.wustl.edu	37	4	155411558	155411558	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142552.1	-1	validated	p.R317H	0.991	6	0.000	4	1.000	0	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_Cadherin,superfamily_Cadherin-like
FGG	2266	genome.wustl.edu	37	4	155533583	155533583	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021870.2	-1	reviewed	p.V28A	0.002	269	0%	281	39.9%	1	0%	benign(0.122)	tolerated(0.29)	neutral(0.039)	NULL
SLC9A3	6550	genome.wustl.edu	37	5	485314	485314	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004174.2	-1	validated	p.A236	0.000	264	0%	219	40.2%	0	-	-	-	-	HMMPfam_Na_H_Exchanger
LPCAT1	79888	genome.wustl.edu	37	5	1495000	1495000	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024830.3	-1	validated	p.M103T	1.000	39	0%	35	42.9%	0	-	benign(0.202)	tolerated(0.16)	neutral(0.079)	superfamily_SSF69593
DNAJC21	134218	genome.wustl.edu	37	5	34936269	34936269	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_194283.3	+1	validated	p.R112	0.959	568	0%	537	41.9%	2	50%	-	-	-	superfamily_Chaperone J-domain
MOCS2	4338	genome.wustl.edu	37	5	52396335	52396335	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004531.3	-1	reviewed	p.I136T	0.962	170	0%	126	48.4%	7	0%	benign(0.248)	deleterious(0.01)	neutral(0.431)	HMMPfam_MoaE,superfamily_Mb_biosynth_MoaE
TRIM23	373	genome.wustl.edu	37	5	64910016	64910016	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001656.3	-1	reviewed	p.N92I	1.000	327	0%	332	45.2%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
RGNEF	64283	genome.wustl.edu	37	5	73091156	73091156	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080479.2	+1	reviewed	p.R322C	0.000	221	0%	203	43.8%	0	-	benign(0.002)	deleterious(0.02)	neutral(0.383)	NULL
HMGCR	3156	genome.wustl.edu	37	5	74641412	74641412	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000859.2	+1	reviewed	p.F127L	1.000	566	0%	612	41.3%	0	-	probably_damaging(0.987)	tolerated(0.14)	deleterious(0.686)	superfamily_Multidrug efflux transporter AcrB transmembrane domain
FAM172A	83989	genome.wustl.edu	37	5	93410349	93410349	+	Splice_Site	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032042.5	-1	validated	e1+2	1.000	414	0%	445	35.1%	0	-	-	-	-	-
PPIP5K2	23262	genome.wustl.edu	37	5	102519007	102519007	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015216.2	+1	provisional	p.T999A	1.000	180	0%	169	45.6%	1	0%	benign(0.007)	tolerated(0.84)	neutral(0.001)	NULL
APC	324	genome.wustl.edu	37	5	112176038	112176038	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000038.4	+1	reviewed	p.M1583V	1.000	166	0%	161	41.6%	0	-	benign(0.144)	tolerated(0.17)	neutral(0.071)	HMMPfam_SAMP
RAPGEF6	51735	genome.wustl.edu	37	5	130828287	130828287	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016340.5	-1	validated	p.K573	1.000	417	0.2%	403	36.5%	0	-	-	-	-	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,superfamily_Ras GEF
LEAP2	116842	genome.wustl.edu	37	5	132209674	132209674	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052971.2	+1	validated	p.S30	0.000	251	0.4%	223	42.2%	4	25%	-	-	-	HMMPfam_LEAP-2
SAR1B	51128	genome.wustl.edu	37	5	133948399	133948399	+	Missense_Mutation	SNP	G	G	T	rs59900570		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001033503.2	-1	reviewed	p.L76M	1.000	104	0%	67	41.8%	37	32.4%	probably_damaging(1)	tolerated(0.1)	deleterious(0.786)	HMMSmart_SAR,HMMPfam_Arf,superfamily_SSF52540
CXXC5	51523	genome.wustl.edu	37	5	139060958	139060958	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016463.7	+1	provisional	p.R284*	1.000	27	0%	27	37%	11	9%	-	-	-	HMMPfam_zf-CXXC
PCDHA10	56139	genome.wustl.edu	37	5	140236674	140236674	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018901.2	+1	reviewed	p.P347	0.619	265	0.4%	186	48.9%	0	-	-	-	-	HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like
ENSG00000250004	0	genome.wustl.edu	37	5	140605594	140605594	+	RNA	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000515856	-1	novel	NULL	0.000	12	0%	15	46.7%	26	34.6%	-	-	-	-
SPINK9	643394	genome.wustl.edu	37	5	147715991	147715991	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040433.1	+1	provisional	p.E21G	0.017	614	0%	554	44.2%	0	-	possibly_damaging(0.915)	deleterious(0)	deleterious(0.811)	NULL
ARHGEF37	389337	genome.wustl.edu	37	5	148999980	148999980	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001669.2	+1	validated	p.Y320H	1.000	304	0%	284	40.5%	1	100%	probably_damaging(0.992)	deleterious(0.04)	deleterious(0.796)	HMMPfam_BAR
GRIA1	2890	genome.wustl.edu	37	5	153065856	153065856	+	Silent	SNP	C	C	T	rs142420782	by1000genomes	TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000827.3	+1	reviewed	p.H367	0.999	222	0%	195	34.4%	0	-	-	-	-	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I
EBF1	1879	genome.wustl.edu	37	5	158523370	158523370	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024007.3	-1	validated	p.L112	0.825	264	0%	175	37.7%	0	-	-	-	-	NULL
SLIT3	6586	genome.wustl.edu	37	5	168189617	168189617	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003062.2	-1	validated	p.G513S	1.000	200	0%	205	45.4%	0	-	probably_damaging(1)	tolerated(0.13)	deleterious(0.752)	HMMPfam_LRRNT,HMMSmart_SM00013,superfamily_RNI-like
DOCK2	1794	genome.wustl.edu	37	5	169138992	169138992	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004946.2	+1	validated	p.R512	1.000	440	0.2%	418	37.8%	2	0%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
NHP2	55651	genome.wustl.edu	37	5	177577983	177577983	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017838.3	-1	reviewed	p.L81S	1.000	173	0%	185	41.6%	91	51.6%	possibly_damaging(0.901)	deleterious(0)	deleterious(0.801)	HMMPfam_Ribosomal_L7Ae,superfamily_SSF55315
CAP2	10486	genome.wustl.edu	37	6	17463242	17463242	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006366.2	+1	reviewed	p.S80G	0.972	283	0%	225	20.4%	0	-	benign(0)	tolerated(0.3)	neutral(0.029)	HMMPfam_CAP_N,superfamily_N-terminal domain of adenylylcyclase associated protein CAP
LRRC16A	55604	genome.wustl.edu	37	6	25600957	25600957	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000329474	+1	known	p.A1179T	1.000	150	0%	160	26.9%	1	0%	benign(0.248)	tolerated(0.26)	neutral(0.059)	NULL
SLC17A4	10050	genome.wustl.edu	37	6	25777081	25777081	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005495.2	+1	validated	p.V388I	1.000	155	0%	142	23.2%	0	-	possibly_damaging(0.809)	tolerated(0.22)	neutral(0.346)	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
FRS3	10817	genome.wustl.edu	37	6	41738551	41738551	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006653.3	-1	reviewed	p.R429C	0.981	24	0%	25	52%	9	22.2%	benign(0.002)	tolerated(0.12)	neutral(0.261)	NULL
POLH	5429	genome.wustl.edu	37	6	43573012	43573012	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006502.2	+1	reviewed	p.L344I	1.000	289	0%	284	43%	3	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_IMS,superfamily_DNA/RNA polymerases
TMEM63B	55362	genome.wustl.edu	37	6	44122123	44122123	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018426.1	+1	validated	p.T750A	0.003	161	0%	124	46%	13	53.8%	benign(0)	tolerated(0.76)	neutral(0.001)	NULL
COL21A1	81578	genome.wustl.edu	37	6	55925773	55925773	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030820.3	-1	reviewed	p.V756	0.784	239	0%	157	38.2%	2	50%	-	-	-	HMMPfam_Collagen
DST	667	genome.wustl.edu	37	6	56350205	56350205	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015548.4	-1	reviewed	p.I4415L	1.000	186	0%	199	38.2%	1	0%	benign(0.025)	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
LMBRD1	55788	genome.wustl.edu	37	6	70500259	70500259	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018368.3	-1	reviewed	p.I59F	0.999	391	0%	353	48.4%	2	50%	probably_damaging(0.958)	tolerated(0.13)	deleterious(0.654)	HMMPfam_LMBR1
MMS22L	253714	genome.wustl.edu	37	6	97679349	97679349	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198468.2	-1	predicted	p.K494	1.000	309	0%	315	42.9%	1	0%	-	-	-	NULL
PNISR	25957	genome.wustl.edu	37	6	99856063	99856063	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015491.1	-1	validated	p.K253R	1.000	304	0%	309	46.6%	3	66.6%	benign(0.224)	tolerated(1)	neutral(0.022)	NULL
GPR6	2830	genome.wustl.edu	37	6	110300541	110300541	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005284.3	+1	validated	p.D76Y	1.000	28	0%	23	39.1%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	superfamily_SSF81321
MED23	9439	genome.wustl.edu	37	6	131948562	131948562	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004830.2	-1	reviewed	p.R45G	1.000	187	0%	239	46.9%	0	-	benign(0.004)	tolerated(0.42)	neutral(0.014)	NULL
SLC35D3	340146	genome.wustl.edu	37	6	137245683	137245683	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008783.1	+1	provisional	p.P367H	0.000	212	0%	186	45.2%	0	-	benign(0.024)	deleterious(0.04)	neutral(0.350)	NULL
OPRM1	4988	genome.wustl.edu	37	6	154412612	154412612	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008504.2	+1	reviewed	p.R390H	0.421	10	0%	12	41.7%	0	-	benign(0)	deleterious(0.02)	neutral(0.383)	NULL
SDK1	221935	genome.wustl.edu	37	7	3678739	3678739	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152744.3	+1	validated	p.A188T	0.996	109	0%	131	41.2%	2	0%	probably_damaging(0.986)	deleterious(0.01)	deleterious(0.840)	HMMSmart_SM00409,superfamily_Immunoglobulin
PMS2	5395	genome.wustl.edu	37	7	6022524	6022524	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000535.5	-1	reviewed	p.A702D	1.000	272	0.4%	259	25.9%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_MutL_C
DAGLB	221955	genome.wustl.edu	37	7	6464423	6464423	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139179.3	-1	validated	p.E367A	0.995	109	0%	140	38.6%	0	-	possibly_damaging(0.902)	tolerated(0.15)	deleterious(0.598)	superfamily_alpha/beta-Hydrolases
THSD7A	221981	genome.wustl.edu	37	7	11676149	11676149	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015204.2	-1	validated	p.C210	0.845	137	0%	116	43.1%	0	-	-	-	-	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
ANLN	54443	genome.wustl.edu	37	7	36492163	36492163	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018685.2	+1	validated	p.R1110H	1.000	346	0.3%	269	43.1%	3	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_PH domain-like
STARD3NL	83930	genome.wustl.edu	37	7	38247157	38247157	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032016.2	+1	provisional	p.S18P	1.000	257	0%	226	47.3%	1	0%	benign(0.01)	tolerated(0.28)	neutral(0.032)	NULL
AMPH	273	genome.wustl.edu	37	7	38457432	38457432	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001635.2	-1	reviewed	p.E464G	1.000	119	0%	144	29.2%	0	-	benign(0)	tolerated(0.31)	neutral(0.027)	NULL
HECW1	23072	genome.wustl.edu	37	7	43484502	43484502	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015052.3	+1	validated	p.S577R	0.146	40	0%	27	55.6%	0	-	benign(0.052)	tolerated(0.07)	neutral(0.322)	NULL
STK17A	9263	genome.wustl.edu	37	7	43635503	43635503	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004760.2	+1	reviewed	p.G70	0.082	100	0%	142	33.1%	0	-	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase
POLM	27434	genome.wustl.edu	37	7	44113770	44113770	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013284.2	-1	validated	p.A344V	0.144	83	0%	36	36.1%	5	0%	benign(0)	tolerated(0.29)	neutral(0.029)	HMMSmart_POLXc,superfamily_SSF81301
ZNF736	728927	genome.wustl.edu	37	7	63797328	63797328	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000423484	+1	known	p.V65A	0.002	308	0%	346	43.9%	0	-	benign(0)	deleterious(0.04)	neutral(0.349)	NULL
ZNF138	7697	genome.wustl.edu	37	7	64292577	64292577	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006524.2	+1	validated	p.S262	0.000	82	0%	68	36.8%	2	0%	-	-	-	NULL
CRCP	27297	genome.wustl.edu	37	7	65595753	65595753	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014478.4	+1	reviewed	p.L23P	1.000	198	0%	236	44.5%	3	100%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMSmart_SM00657,superfamily_HRDC-like,HMMPfam_RNA_pol_III_C17
RABGEF1	27342	genome.wustl.edu	37	7	66262417	66262417	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014504.2	+1	validated	p.R218C	1.000	180	0%	196	47.4%	2	0%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	superfamily_SSF109993
WBSCR16	81554	genome.wustl.edu	37	7	74482570	74482570	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030798.3	-1	reviewed	p.V164I	0.076	58	0%	83	41%	3	66.6%	benign(0.018)	tolerated(1)	neutral(0.001)	superfamily_RCC1/BLIP-II
DMTF1	9988	genome.wustl.edu	37	7	86823338	86823338	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142327.1	+1	reviewed	p.R650G	1.000	148	0%	113	37.2%	8	25%	benign(0.078)	deleterious(0)	neutral(0.450)	NULL
PON3	5446	genome.wustl.edu	37	7	94989337	94989337	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000940.2	-1	reviewed	p.G338E	0.013	113	0%	125	35.2%	0	-	possibly_damaging(0.722)	tolerated(0.1)	deleterious(0.548)	superfamily_Calcium-dependent phosphotriesterase
COPS6	10980	genome.wustl.edu	37	7	99689047	99689047	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006833.4	+1	reviewed	p.E249D	1.000	288	0%	283	36.4%	220	40%	unknown(0)	-	-	NULL
LRRC17	10234	genome.wustl.edu	37	7	102574435	102574435	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031692.2	+1	validated	p.S25	0.000	75	0%	68	48.5%	1	0%	-	-	-	NULL
LAMB1	3912	genome.wustl.edu	37	7	107576085	107576085	+	Silent	SNP	A	A	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002291.2	-1	reviewed	p.I1321	0.935	272	0%	267	40.8%	21	23.8%	-	-	-	NULL
LAMB1	3912	genome.wustl.edu	37	7	107602116	107602116	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002291.2	-1	reviewed	p.P621	0.674	229	0.9%	237	42.6%	2	50%	-	-	-	NULL
LRRN3	54674	genome.wustl.edu	37	7	110763893	110763893	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099658.1	+1	validated	p.E355D	0.998	163	0%	140	43.6%	1	0%	benign(0.047)	tolerated(0.15)	neutral(0.244)	HMMSmart_SM00369,superfamily_L domain-like
ASZ1	136991	genome.wustl.edu	37	7	117003734	117003734	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_130768.2	-1	validated	p.S448	0.999	283	0%	368	41%	0	-	-	-	-	NULL
WASL	8976	genome.wustl.edu	37	7	123329184	123329184	+	Silent	SNP	A	A	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003941.2	-1	reviewed	p.S456	0.927	225	0%	218	35.3%	1	100%	-	-	-	superfamily_WASP_C
LRRC4	64101	genome.wustl.edu	37	7	127669511	127669511	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022143.4	-1	validated	p.A395T	1.000	131	0%	104	50%	4	0%	benign(0.122)	deleterious(0.01)	neutral(0.416)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
LRRC4	64101	genome.wustl.edu	37	7	127670386	127670386	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022143.4	-1	validated	p.V103A	1.000	355	0%	326	44.2%	0	-	benign(0.186)	tolerated(0.31)	neutral(0.044)	HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like
PRRT4	401399	genome.wustl.edu	37	7	127990920	127990920	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001114726.2	-1	validated	p.I897T	1.000	20	0%	11	36.4%	0	-	possibly_damaging(0.662)	deleterious(0)	deleterious(0.678)	NULL
LUC7L2	51631	genome.wustl.edu	37	7	139094364	139094365	+	Frame_Shift_Ins	INS	-	-	AG	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016019.2	+1	validated	p.E252fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_LUC7
LOC100287491	100287491	genome.wustl.edu	37	7	140155047	140155047	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002342800.1	+1	model	p.N29	0.296	136	0%	143	45.5%	3	66.6%	-	-	-	NULL
DENND2A	27147	genome.wustl.edu	37	7	140266965	140266965	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015689.3	-1	validated	p.Y567F	1.000	64	0%	58	44.8%	0	-	benign(0.384)	tolerated(0.07)	neutral(0.442)	HMMPfam_uDENN,HMMSmart_SM00800
OR6B1	135946	genome.wustl.edu	37	7	143702008	143702008	+	Missense_Mutation	SNP	G	G	A	rs142237296	by1000genomes	TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005281.1	+1	provisional	p.A307T	0.012	102	0%	74	50%	0	-	benign(0)	tolerated(0.71)	neutral(0.002)	superfamily_Family A G protein-coupled receptor-like
CUL1	8454	genome.wustl.edu	37	7	148486915	148486915	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003592.2	+1	validated	p.S557	0.040	190	0%	170	41.8%	9	11.1%	-	-	-	HMMPfam_Cullin,HMMSmart_SM00182,superfamily_Cullin homology domain
EZH2	2146	genome.wustl.edu	37	7	148515149	148515149	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004456.3	-1	reviewed	p.R354C	1.000	321	0%	301	42.9%	4	50%	benign(0.06)	tolerated(0.07)	neutral(0.323)	NULL
SSPO	23145	genome.wustl.edu	37	7	149485845	149485845	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000378016	+1	known	p.C1355Y	0.995	202	0%	187	42.8%	0	-	-	-	-	NULL
ARHGEF10	9639	genome.wustl.edu	37	8	1812585	1812585	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014629.2	+1	reviewed	p.S176	0.794	287	0%	236	39%	2	100%	-	-	-	NULL
ANGPT2	285	genome.wustl.edu	37	8	6371357	6371357	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001147.2	-1	reviewed	p.G347	0.998	320	0%	303	36%	3	33.3%	-	-	-	HMMPfam_Fibrinogen_C,HMMSmart_SM00186,superfamily_Fibrinogen C-terminal domain-like
DEFB104A	140596	genome.wustl.edu	37	8	7698677	7698677	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080389.2	+1	reviewed	p.R60	0.019	1377	0%	1272	16.7%	0	-	-	-	-	NULL
CSGALNACT1	55790	genome.wustl.edu	37	8	19297444	19297444	+	Splice_Site	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130518.1	-1	validated	e3-2	0.999	261	0%	294	36.4%	0	-	-	-	-	-
PEBP4	157310	genome.wustl.edu	37	8	22582467	22582467	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144962.2	-1	validated	p.Y136H	0.977	156	0%	178	41.6%	4	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PBP,superfamily_PEBP
PPP2R2A	5520	genome.wustl.edu	37	8	26227857	26227857	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002717.3	+1	reviewed	p.W424*	1.000	189	0%	237	46.8%	8	12.5%	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like
FZD3	7976	genome.wustl.edu	37	8	28413331	28413331	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017412.2	+1	reviewed	p.I544V	1.000	150	0%	174	44.3%	5	40%	benign(0)	tolerated(1)	-	NULL
FUT10	84750	genome.wustl.edu	37	8	33246998	33246998	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032664.3	-1	validated	p.R232H	0.888	156	0%	210	49%	0	-	probably_damaging(0.978)	tolerated(0.11)	deleterious(0.692)	HMMPfam_Glyco_transf_10
BAG4	9530	genome.wustl.edu	37	8	38034641	38034641	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004874.2	+1	reviewed	p.A85V	0.084	14	0%	15	46.7%	0	-	probably_damaging(0.98)	deleterious(0)	deleterious(0.869)	NULL
PRKDC	5591	genome.wustl.edu	37	8	48802835	48802835	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000314191	-1	known	p.S1351P	0.007	375	0%	361	44.6%	0	-	possibly_damaging(0.91)	tolerated(0.21)	neutral(0.406)	NULL
ST18	9705	genome.wustl.edu	37	8	53045645	53045645	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014682.2	-1	validated	p.K806E	1.000	289	0%	283	39.9%	0	-	probably_damaging(0.992)	deleterious(0.02)	deleterious(0.831)	superfamily_SSF103637
NSMAF	8439	genome.wustl.edu	37	8	59520366	59520366	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144772.1	-1	reviewed	p.R272C	0.895	217	0%	231	45.5%	0	-	probably_damaging(0.993)	deleterious(0.01)	deleterious(0.856)	HMMPfam_GRAM,HMMSmart_SM00568,superfamily_PH domain-like
LOC100288066	100288066	genome.wustl.edu	37	8	70585308	70585308	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002342855.1	+1	model	p.T146A	0.292	236	0%	243	41.6%	0	-	-	-	-	NULL
EYA1	2138	genome.wustl.edu	37	8	72111652	72111652	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000503.4	-1	reviewed	p.A568T	0.972	84	0%	65	38.5%	0	-	benign(0.003)	deleterious(0.02)	neutral(0.383)	HMMPfam_Hydrolase
SNORA72	26775	genome.wustl.edu	37	8	99055037	99055037	+	RNA	SNP	C	C	T	rs184494928	by1000genomes	TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000501016	+1	known	NULL	0.001	183	0%	225	42.7%	14	42.8%	-	-	-	-
ATP6V1C1	528	genome.wustl.edu	37	8	104054637	104054637	+	Splice_Site	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001695.4	+1	reviewed	e2+2	1.000	277	0%	405	51.9%	0	-	-	-	-	-
WDR67	93594	genome.wustl.edu	37	8	124142554	124142554	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145647.3	+1	validated	p.D796G	1.000	251	0%	321	43.3%	4	25%	possibly_damaging(0.496)	deleterious(0.01)	deleterious(0.571)	NULL
ZHX1	11244	genome.wustl.edu	37	8	124265918	124265918	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001017926.1	-1	reviewed	p.R757C	0.943	209	0%	253	45.8%	3	66.6%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_Homeodomain_like
TG	7038	genome.wustl.edu	37	8	133906149	133906149	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003235.4	+1	reviewed	p.Y992	0.691	152	0%	149	47.7%	0	-	-	-	-	superfamily_Thyroglobulin type-1 domain
MIR151A	442893	genome.wustl.edu	37	8	141742742	141742742	+	RNA	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000385057	-1	known	NULL	1.000	124	0%	123	39.8%	0	-	-	-	-	-
NRBP2	340371	genome.wustl.edu	37	8	144919933	144919933	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000423469	-1	known	p.P71S	0.278	67	0%	58	34.5%	1	0%	-	-	-	NULL
PLEC	5339	genome.wustl.edu	37	8	145006626	145006626	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_201380.2	-1	reviewed	p.V777E	1.000	66	0%	46	34.8%	0	-	unknown(0)	-	-	HMMSmart_SM00150,superfamily_Spectrin repeat
LRRC14	9684	genome.wustl.edu	37	8	145745144	145745144	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014665.1	+1	provisional	p.V12G	1.000	29	0%	18	22.2%	0	-	possibly_damaging(0.55)	deleterious(0)	deleterious(0.631)	NULL
ZNF251	90987	genome.wustl.edu	37	8	145979657	145979657	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138367.1	-1	validated	p.E28V	0.043	57	0%	69	42%	10	20%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
RFX3	5991	genome.wustl.edu	37	9	3330445	3330445	+	Silent	SNP	A	A	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_134428.1	-1	reviewed	p.T96	0.998	247	0%	230	42.6%	0	-	-	-	-	HMMPfam_RFX1_trans_act
UHRF2	115426	genome.wustl.edu	37	9	6481664	6481664	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152896.1	+1	reviewed	p.T394	1.000	160	0%	213	42.3%	1	0%	-	-	-	superfamily_FYVE/PHD zinc finger,HMMPfam_PHD
ADAMTSL1	92949	genome.wustl.edu	37	9	18887911	18887911	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040272.4	+1	validated	p.T1444	0.000	222	0%	178	46.6%	17	29.4%	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
LINGO2	158038	genome.wustl.edu	37	9	27949014	27949014	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152570.1	-1	provisional	p.F552	1.000	225	0%	207	44%	0	-	-	-	-	NULL
ACO1	48	genome.wustl.edu	37	9	32425907	32425907	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002197.2	+1	reviewed	p.T420	0.221	207	0%	195	35.9%	3	33.3%	-	-	-	HMMPfam_Aconitase,superfamily_Aconitase iron-sulfur domain
DNAJA1	3301	genome.wustl.edu	37	9	33026954	33026955	+	In_Frame_Ins	INS	-	-	GGA	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001539.2	+1	validated	p.96in_frame_insG	1.000:1.000	-	-	-	-	-	-	-	-	-	superfamily_Chaperone J-domain
MCART1	92014	genome.wustl.edu	37	9	37878124	37878124	+	RNA	SNP	C	C	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_024872.1	-1	validated	NULL	0.891	13	0%	13	46.2%	0	-	-	-	-	-
TRPM6	140803	genome.wustl.edu	37	9	77397324	77397324	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017662.4	-1	reviewed	p.F1055L	1.000	175	0%	262	43.1%	0	-	possibly_damaging(0.492)	tolerated(1)	neutral(0.164)	HMMPfam_Ion_trans
CEP78	84131	genome.wustl.edu	37	9	80881568	80881570	+	In_Frame_Del	DEL	GAG	GAG	-	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	GAG	GAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098802.1	+1	validated	p.E688in_frame_del	0.956:0.804:0.016	-	-	-	-	-	-	-	-	-	NULL
TEX10	54881	genome.wustl.edu	37	9	103072635	103072635	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017746.3	-1	validated	p.I743	0.976	277	0%	290	34.5%	12	50%	-	-	-	NULL
RNF20	56254	genome.wustl.edu	37	9	104302910	104302911	+	Frame_Shift_Ins	INS	-	-	GA	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019592.5	+1	reviewed	p.G149fs	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
ASTN2	23245	genome.wustl.edu	37	9	119249711	119249711	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198187.3	-1	reviewed	p.S1142G	1.000	159	0%	128	41.4%	1	0%	possibly_damaging(0.839)	deleterious(0.02)	deleterious(0.704)	HMMPfam_fn3,superfamily_Fibronectin type III
CDK5RAP2	55755	genome.wustl.edu	37	9	123199768	123199768	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018249.4	-1	reviewed	p.S1254P	1.000	217	0%	218	44%	5	20%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
GARNL3	84253	genome.wustl.edu	37	9	130147416	130147416	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032293.4	+1	validated	p.A794T	1.000	146	0%	97	40.2%	3	66.6%	probably_damaging(0.99)	tolerated(1)	neutral(0.442)	HMMPfam_CNH,HMMSmart_SM00036
TOR1A	1861	genome.wustl.edu	37	9	132585000	132585000	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000113.2	-1	reviewed	p.G102R	1.000	454	0%	529	43.1%	4	75%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Torsin,superfamily_P-loop containing nucleoside triphosphate hydrolases
WDR5	11091	genome.wustl.edu	37	9	137019605	137019605	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017588.2	+1	reviewed	p.V217M	0.998	240	0%	185	16.2%	7	14.2%	probably_damaging(0.978)	deleterious(0)	deleterious(0.865)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
CAMSAP1	157922	genome.wustl.edu	37	9	138713135	138713135	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015447.3	-1	validated	p.T1124	0.005	133	0%	83	47%	2	0%	-	-	-	NULL
ARHGAP21	57584	genome.wustl.edu	37	10	24873776	24873776	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020824.3	-1	validated	p.S1814	0.002	331	0%	184	77.2%	11	72.7%	-	-	-	NULL
MASTL	84930	genome.wustl.edu	37	10	27444471	27444471	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032844.3	+1	reviewed	p.K39R	1.000	110	0%	73	71.2%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Kinase_like,HMMPfam_Pkinase
PARD3	56288	genome.wustl.edu	37	10	34759034	34759034	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019619.3	-1	validated	p.S187	0.329	200	0%	198	43.9%	0	-	-	-	-	NULL
ANKRD30A	91074	genome.wustl.edu	37	10	37431046	37431046	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052997.2	+1	validated	p.T351	0.225	236	0%	265	44.9%	0	-	-	-	-	NULL
OR13A1	79290	genome.wustl.edu	37	10	45799361	45799361	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004297.2	-1	validated	p.C170	0.000	21	4.8%	22	54.5%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ALOX5	240	genome.wustl.edu	37	10	45935934	45935934	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000698.2	+1	reviewed	p.Y346	0.921	150	0%	112	42%	0	-	-	-	-	HMMPfam_Lipoxygenase,superfamily_Lipoxygenase
VSTM4	196740	genome.wustl.edu	37	10	50256526	50256526	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031746.3	-1	validated	p.K258E	1.000	149	0%	91	38.5%	0	-	probably_damaging(0.995)	tolerated(0.19)	deleterious(0.507)	NULL
ERCC6	2074	genome.wustl.edu	37	10	50690857	50690857	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000124.2	-1	reviewed	p.L682R	1.000	157	0%	128	43.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SNF2_N,HMMSmart_DEXDc,superfamily_SSF52540
NCOA4	8031	genome.wustl.edu	37	10	51584688	51584688	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145260.1	+1	reviewed	p.K279E	1.000	133	0%	88	26.1%	6	50%	benign(0.202)	deleterious(0.03)	neutral(0.384)	NULL
NCOA4	8031	genome.wustl.edu	37	10	51584689	51584689	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145260.1	+1	reviewed	p.K279R	1.000	136	0%	88	27.3%	6	50%	benign(0.418)	tolerated(0.25)	neutral(0.173)	NULL
ANK3	288	genome.wustl.edu	37	10	61827702	61827702	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020987.2	-1	reviewed	p.S4104G	1.000	247	0%	187	49.7%	1	0%	probably_damaging(0.99)	tolerated(0.11)	deleterious(0.713)	HMMPfam_Death,HMMSmart_DEATH,superfamily_DEATH_like
AGAP5	729092	genome.wustl.edu	37	10	75457364	75457364	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144000.1	-1	validated	p.Q50	0.049	263	0%	221	46.2%	4	50%	-	-	-	NULL
KAT6B	23522	genome.wustl.edu	37	10	76789699	76789699	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012330.2	+1	validated	p.Y1706C	1.000	34	0%	37	32.4%	3	0%	probably_damaging(0.999)	-	-	NULL
EIF5AL1	143244	genome.wustl.edu	37	10	81272750	81272750	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099692.1	+1	validated	p.P115	0.997	386	0%	292	40.1%	70	0%	-	-	-	superfamily_Nucleic_acid_OB,HMMPfam_eIF-5a
PLCE1	51196	genome.wustl.edu	37	10	95993882	95993882	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016341.3	+1	reviewed	p.D676G	0.998	315	0%	262	27.9%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RasGEF,HMMSmart_SM00147,superfamily_Ras GEF
MMS19	64210	genome.wustl.edu	37	10	99228062	99228062	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022362.4	-1	validated	p.V389I	0.014	78	0%	88	35.2%	3	33.3%	benign(0)	tolerated(0.8)	neutral(0.001)	superfamily_ARM repeat
CRTAC1	55118	genome.wustl.edu	37	10	99695947	99695947	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018058.4	-1	validated	p.N134S	1.000	96	0%	90	34.4%	0	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_FG-GAP,superfamily_Integrin alpha N-terminal domain
ADD3	120	genome.wustl.edu	37	10	111860608	111860608	+	Splice_Site	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016824.3	+1	reviewed	e1+2	1.000	153	0%	142	46.5%	0	-	-	-	-	-
RBM20	282996	genome.wustl.edu	37	10	112583363	112583363	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134363.1	+1	reviewed	p.I1148F	1.000	128	0%	136	34.6%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
PTPRE	5791	genome.wustl.edu	37	10	129861420	129861420	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006504.4	+1	reviewed	p.L233	0.992	243	0%	198	41.9%	0	-	-	-	-	HMMPfam_Y_phosphatase,HMMSmart_SM00194,superfamily_(Phosphotyrosine protein) phosphatases II
PTPRE	5791	genome.wustl.edu	37	10	129877827	129877827	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006504.4	+1	reviewed	p.A632	0.330	316	0%	247	45.7%	0	-	-	-	-	HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II
JAKMIP3	282973	genome.wustl.edu	37	10	133980485	133980485	+	Splice_Site	SNP	A	A	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105521.2	+1	provisional	e21-2	1.000	649	0.2%	728	43.7%	0	-	-	-	-	-
TTC40	54777	genome.wustl.edu	37	10	134754503	134754503	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173572.3	-1	validated	p.P123L	0.778	431	0%	359	46.2%	1	100%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	NULL
MUC5B	727897	genome.wustl.edu	37	11	1247907	1247907	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002458.1	+1	validated	p.F88V	1.000	49	0%	46	45.7%	1	0%	probably_damaging(0.998)	-	-	HMMPfam_VWD,HMMSmart_SM00216
OR51A7	119687	genome.wustl.edu	37	11	4928964	4928964	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004749.1	+1	provisional	p.R122H	1.000	172	0%	180	41.1%	0	-	benign(0.14)	deleterious(0.02)	neutral(0.395)	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321
SAAL1	113174	genome.wustl.edu	37	11	18108460	18108460	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138421.2	-1	validated	p.A332V	1.000	193	0%	203	39.4%	8	50%	benign(0.43)	tolerated(0.18)	neutral(0.196)	NULL
ANO5	203859	genome.wustl.edu	37	11	22276962	22276962	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_213599.2	+1	reviewed	p.E409G	1.000	191	0%	202	43.1%	0	-	probably_damaging(0.992)	tolerated(0.35)	neutral(0.468)	NULL
FBXO3	26273	genome.wustl.edu	37	11	33792360	33792360	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012175.3	-1	reviewed	p.R41*	1.000	241	0.4%	191	38.2%	1	0%	-	-	-	HMMPfam_F-box,HMMSmart_SM00256,superfamily_F-box domain
ZNF408	79797	genome.wustl.edu	37	11	46724548	46724548	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024741.2	+1	validated	p.G136D	0.060	240	0%	260	33.8%	0	-	possibly_damaging(0.876)	deleterious(0)	deleterious(0.786)	NULL
OR4A15	81328	genome.wustl.edu	37	11	55135868	55135868	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005275.1	+1	provisional	p.V170A	0.000	338	0%	311	46.3%	0	-	benign(0.002)	tolerated(0.51)	neutral(0.009)	HMMPfam_7tm_1,superfamily_SSF81321
SMTNL1	219537	genome.wustl.edu	37	11	57314092	57314092	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105565.1	+1	provisional	p.R454Q	0.300	143	0%	113	41.6%	0	-	possibly_damaging(0.626)	tolerated(0.06)	deleterious(0.540)	HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain
PATL1	219988	genome.wustl.edu	37	11	59420470	59420470	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152716.2	-1	validated	p.G381	0.903	212	0.5%	194	36.1%	3	33.3%	-	-	-	HMMPfam_PAT1
MS4A8B	83661	genome.wustl.edu	37	11	60468467	60468467	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031457.1	+1	reviewed	p.L45P	0.000	247	0%	227	44.1%	7	57.1%	benign(0.025)	deleterious(0.02)	neutral(0.384)	NULL
FADS3	3995	genome.wustl.edu	37	11	61643345	61643345	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021727.3	-1	reviewed	p.T422A	0.346	69	0%	50	50%	59	59.3%	benign(0.406)	tolerated(0.75)	neutral(0.132)	NULL
PLCB3	5331	genome.wustl.edu	37	11	64023930	64023930	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000932.2	+1	reviewed	p.E261K	1.000	67	0%	55	47.3%	1	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_efhand_like,superfamily_EF-hand
CCDC88B	283234	genome.wustl.edu	37	11	64108208	64108208	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032251.5	+1	reviewed	p.R64W	0.999	39	0%	42	16.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DPF2	5977	genome.wustl.edu	37	11	65113772	65113772	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006268.3	+1	reviewed	p.Y320C	1.000	260	0%	260	41.5%	5	20%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,PatternScan_ZF_PHD_1,HMMPfam_PHD
TSGA10IP	254187	genome.wustl.edu	37	11	65726680	65726680	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000312452	+1	known	p.V9A	0.002	78	0%	42	42.9%	0	-	-	-	-	NULL
DPP3	10072	genome.wustl.edu	37	11	66259059	66259059	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005700.3	+1	reviewed	p.R298H	1.000	100	1%	84	38.1%	4	50%	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	HMMPfam_Peptidase_M49
PPFIA1	8500	genome.wustl.edu	37	11	70194401	70194401	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003626.2	+1	reviewed	p.S680P	1.000	263	0%	245	40%	0	-	benign(0.217)	deleterious(0.04)	neutral(0.370)	NULL
GRM5	2915	genome.wustl.edu	37	11	88780437	88780437	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001143831.2	-1	reviewed	p.M202V	1.000	167	0%	155	41.9%	0	-	benign(0.045)	deleterious(0.02)	neutral(0.386)	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I
FAT3	120114	genome.wustl.edu	37	11	92534638	92534638	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008781.2	+1	validated	p.D2820G	1.000	148	0%	128	41.4%	0	-	benign(0.003)	tolerated(0.06)	neutral(0.323)	HMMPfam_Cadherin,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
SESN3	143686	genome.wustl.edu	37	11	94911070	94911070	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144665.2	-1	provisional	p.Y354H	1.000	117	0%	120	42.5%	2	0%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_PA26
SESN3	143686	genome.wustl.edu	37	11	94918442	94918442	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144665.2	-1	provisional	p.S247F	1.000	287	0.3%	264	47.7%	1	0%	probably_damaging(0.961)	tolerated(0.17)	neutral(0.463)	HMMPfam_PA26
CNTN5	53942	genome.wustl.edu	37	11	99715707	99715707	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014361.2	+1	reviewed	p.R134K	1.000	557	0%	611	43.7%	0	-	benign(0.001)	tolerated(0.37)	neutral(0.019)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
MMP3	4314	genome.wustl.edu	37	11	102710976	102710976	+	Silent	SNP	G	G	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002422.3	-1	reviewed	p.P266	0.000	105	0%	83	43.4%	6	0%	-	-	-	NULL
ATM	472	genome.wustl.edu	37	11	108158326	108158326	+	Splice_Site	SNP	G	G	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000051.3	+1	reviewed	e26-1	1.000	126	0%	138	40.6%	0	-	-	-	-	-
ATM	472	genome.wustl.edu	37	11	108188219	108188219	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000051.3	+1	reviewed	p.N2106K	0.951	192	0%	226	45.6%	0	-	possibly_damaging(0.879)	tolerated(0.06)	deleterious(0.665)	HMMPfam_FAT,superfamily_ARM repeat
PPP2R1B	5519	genome.wustl.edu	37	11	111622913	111622913	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181699.2	-1	reviewed	p.I436	0.999	135	0%	101	36.6%	2	0%	-	-	-	HMMPfam_HEAT,superfamily_ARM-type_fold
USP28	57646	genome.wustl.edu	37	11	113675754	113675754	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020886.2	-1	validated	p.E805D	0.998	168	0%	192	34.9%	3	66.6%	probably_damaging(0.973)	deleterious(0.03)	deleterious(0.779)	NULL
BUD13	84811	genome.wustl.edu	37	11	116629011	116629012	+	Frame_Shift_Ins	INS	-	-	TC	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032725.3	-1	validated	p.D491fs	0.678:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_DUF2050
SIK3	23387	genome.wustl.edu	37	11	116797961	116797961	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025164.3	-1	validated	p.D139G	1.000	347	0%	369	40.9%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
CXCR5	643	genome.wustl.edu	37	11	118764831	118764831	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032966.1	+1	reviewed	p.G148D	0.000	47	0%	56	42.9%	0	-	benign(0)	tolerated(0.44)	neutral(0.013)	HMMPfam_7tm_1,superfamily_SSF81321
OR10G4	390264	genome.wustl.edu	37	11	123886693	123886693	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004462.1	+1	provisional	p.S138G	0.000	345	0%	296	41.2%	0	-	benign(0)	tolerated(0.15)	neutral(0.241)	HMMPfam_7tm_1,superfamily_SSF81321
EFCAB4B	84766	genome.wustl.edu	37	12	3747319	3747319	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144958.1	-1	validated	p.Q525K	1.000	57	0%	44	47.7%	0	-	possibly_damaging(0.952)	tolerated(0.87)	neutral(0.396)	NULL
GDF3	9573	genome.wustl.edu	37	12	7843050	7843050	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020634.1	-1	reviewed	p.P173	0.000	116	0%	119	36.1%	0	-	-	-	-	NULL
ATF7IP	55729	genome.wustl.edu	37	12	14628904	14628904	+	Splice_Site	SNP	T	T	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018179.3	+1	validated	e10+2	1.000	410	0.2%	377	42.4%	1	100%	-	-	-	-
PIK3C2G	5288	genome.wustl.edu	37	12	18715750	18715750	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004570.4	+1	reviewed	p.Q1194R	0.460	355	0%	324	43.5%	0	-	benign(0.273)	tolerated(0.7)	neutral(0.031)	superfamily_PX domain
C12orf35	55196	genome.wustl.edu	37	12	32136112	32136112	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018169.3	+1	validated	p.V741	0.002	175	0%	161	36.6%	3	0%	-	-	-	NULL
ENDOU	8909	genome.wustl.edu	37	12	48110712	48110712	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006025.3	-1	reviewed	p.P130L	0.222	549	0%	552	42.4%	0	-	probably_damaging(0.965)	tolerated(0.12)	deleterious(0.667)	HMMPfam_XendoU
SLC4A8	9498	genome.wustl.edu	37	12	51888733	51888733	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039960.1	+1	validated	p.F925S	1.000	385	0%	306	43.8%	0	-	probably_damaging(0.995)	tolerated(0.12)	deleterious(0.718)	HMMPfam_HCO3_cotransp
KRT1	3848	genome.wustl.edu	37	12	53073720	53073720	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006121.3	-1	reviewed	p.G138E	0.097	713	0%	742	36.7%	0	-	unknown(0)	deleterious(0.04)	-	NULL
KRT8	3856	genome.wustl.edu	37	12	53293804	53293804	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002273.3	-1	reviewed	p.L246	1.000	32	0%	34	29.4%	446	39%	-	-	-	superfamily_Prefoldin,HMMPfam_Filament
KIAA0748	9840	genome.wustl.edu	37	12	55354987	55354987	+	Splice_Site	SNP	T	T	C	rs114438533	byCluster;byFrequency;by1000genomes	TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000257883	-1	known	e2+2	0.000	274	0%	258	42.2%	1	0%	benign(0.081)	deleterious(0)	neutral(0.451)	-
OR6C75	390323	genome.wustl.edu	37	12	55758988	55758988	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005497.1	+1	provisional	p.T32A	0.446	132	0%	123	37.4%	0	-	possibly_damaging(0.793)	tolerated(0.45)	neutral(0.310)	superfamily_SSF81321
SLC39A5	283375	genome.wustl.edu	37	12	56625308	56625308	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135195.1	+1	validated	p.R84W	0.899	88	0%	65	43.1%	0	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
STAT2	6773	genome.wustl.edu	37	12	56739945	56739945	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005419.3	-1	reviewed	p.I696S	1.000	439	0%	455	17.8%	6	0%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	superfamily_SH2 domain
LRP1	4035	genome.wustl.edu	37	12	57573236	57573236	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002332.2	+1	reviewed	p.D1621E	1.000	155	0%	139	38.8%	0	-	probably_damaging(0.999)	tolerated(0.29)	deleterious(0.519)	HMMSmart_SM00135,superfamily_YWTD domain
R3HDM2	22864	genome.wustl.edu	37	12	57663634	57663634	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014925.3	-1	validated	p.T482	0.719	322	0%	397	42.1%	1	0%	-	-	-	NULL
INHBE	83729	genome.wustl.edu	37	12	57850225	57850225	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031479.3	+1	validated	p.Q216R	1.000	85	0%	76	44.7%	0	-	benign(0)	tolerated(1)	-	NULL
B4GALNT1	2583	genome.wustl.edu	37	12	58023998	58023998	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001478.3	-1	reviewed	p.N217D	1.000	177	0%	144	38.9%	0	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
LRIG3	121227	genome.wustl.edu	37	12	59267937	59267937	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153377.3	-1	provisional	p.N1005	0.012	279	0%	285	43.2%	1	0%	-	-	-	NULL
LRIG3	121227	genome.wustl.edu	37	12	59268111	59268111	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153377.3	-1	provisional	p.G947	0.987	272	0%	284	44.7%	0	-	-	-	-	NULL
SLC16A7	9194	genome.wustl.edu	37	12	60169197	60169197	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004731.3	+1	provisional	p.A374V	1.000	224	0%	199	43.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
LEMD3	23592	genome.wustl.edu	37	12	65633989	65633989	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014319.4	+1	reviewed	p.V699	0.995	242	0%	266	47.4%	0	-	-	-	-	HMMPfam_MAN1_C
ZFC3H1	196441	genome.wustl.edu	37	12	72024660	72024660	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144982.4	-1	validated	p.D1182G	1.000	374	0%	388	36.9%	0	-	benign(0.13)	tolerated(0.15)	neutral(0.252)	NULL
NAV3	89795	genome.wustl.edu	37	12	78334913	78334913	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014903.4	+1	validated	p.M138I	1.000	289	0%	265	47.9%	0	-	possibly_damaging(0.875)	deleterious(0)	deleterious(0.784)	HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain
NAV3	89795	genome.wustl.edu	37	12	78593313	78593313	+	Splice_Site	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014903.4	+1	validated	e36+2	1.000	146	0%	174	52.9%	0	-	-	-	-	-
PPP1R12A	4659	genome.wustl.edu	37	12	80169710	80169710	+	Nonstop_Mutation	SNP	T	T	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001143885.1	-1	reviewed	p.*1031L	0.996	377	0.5%	404	45.3%	0	-	-	-	-	NULL
PPFIA2	8499	genome.wustl.edu	37	12	81675166	81675166	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003625.2	-1	reviewed	p.W1028R	1.000	263	0%	218	11%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SAM_1,HMMSmart_SM00454,superfamily_SAM/Pointed domain
DCN	1634	genome.wustl.edu	37	12	91558406	91558406	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001920.3	-1	reviewed	p.D100E	0.997	403	0%	439	37.1%	22	0%	possibly_damaging(0.932)	deleterious(0.01)	deleterious(0.784)	HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like
NR2C1	7181	genome.wustl.edu	37	12	95453720	95453720	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003297.2	-1	reviewed	p.V109G	0.527	203	0%	249	41.4%	0	-	benign(0)	deleterious(0.01)	neutral(0.406)	NULL
CDK17	5128	genome.wustl.edu	37	12	96717756	96717756	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002595.3	-1	reviewed	p.M85V	1.000	196	0%	182	41.8%	1	100%	benign(0.001)	tolerated(0.23)	neutral(0.042)	NULL
SLC25A3	5250	genome.wustl.edu	37	12	98989245	98989245	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005888.3	+1	reviewed	p.F64L	1.000	442	0%	428	41.8%	2	50%	possibly_damaging(0.727)	deleterious(0)	deleterious(0.709)	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr
ACACB	32	genome.wustl.edu	37	12	109702938	109702938	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001093.3	+1	reviewed	p.A2322	0.053	26	0%	32	34.4%	5	20%	-	-	-	HMMPfam_Carboxyl_trans,superfamily_ClpP/crotonase
OAS3	4940	genome.wustl.edu	37	12	113379377	113379377	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006187.2	+1	reviewed	p.G60	1.000	109	0%	94	34%	2	50%	-	-	-	superfamily_Nucleotidyltransferase
MED13L	23389	genome.wustl.edu	37	12	116403923	116403923	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015335.3	-1	validated	p.C2117*	1.000	247	0%	224	41.5%	4	25%	-	-	-	NULL
MSI1	4440	genome.wustl.edu	37	12	120785280	120785280	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002442.2	-1	reviewed	p.A276	0.006	92	1.1%	67	31.3%	2	100%	-	-	-	NULL
HNF1A	6927	genome.wustl.edu	37	12	121426701	121426701	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000545.5	+1	reviewed	p.R131Q	1.000	151	0%	139	46%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_HNF-1_N,superfamily_lambda repressor-like DNA-binding domains
UBC	7316	genome.wustl.edu	37	12	125397774	125397774	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021009.4	-1	validated	p.I182V	1.000	526	0%	493	34.7%	591	11.3%	benign(0.003)	deleterious(0)	neutral(0.445)	HMMPfam_ubiquitin,HMMSmart_SM00213,PatternScan_UBIQUITIN_1,superfamily_Ubiquitin-like
TMEM132B	114795	genome.wustl.edu	37	12	126138438	126138438	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052907.2	+1	provisional	p.N807D	0.001	169	0%	182	42.3%	0	-	benign(0)	tolerated(0.93)	-	NULL
SACS	26278	genome.wustl.edu	37	13	23929566	23929566	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000455470	-1	known	p.*295Q	0.639	334	0%	366	35.8%	1	100%	-	-	-	NULL
NBEA	26960	genome.wustl.edu	37	13	35672509	35672509	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015678.4	+1	validated	p.K549	1.000	460	0%	415	40.2%	0	-	-	-	-	superfamily_ARM repeat
SOHLH2	54937	genome.wustl.edu	37	13	36744853	36744853	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017826.2	-1	validated	p.S358P	0.941	301	0%	279	46.2%	0	-	possibly_damaging(0.681)	deleterious(0)	deleterious(0.688)	NULL
KBTBD7	84078	genome.wustl.edu	37	13	41768178	41768179	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032138.4	-1	provisional	p.G73fs	0.410:0.624	-	-	-	-	-	-	-	-	-	HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB
TDRD3	81550	genome.wustl.edu	37	13	61041458	61041458	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030794.2	+1	validated	p.T54I	1.000	284	0%	270	53%	0	-	benign(0.003)	tolerated(0.59)	neutral(0.004)	NULL
PCDH9	5101	genome.wustl.edu	37	13	67802233	67802234	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_203487.2	-1	reviewed	p.E113fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like
KLF12	11278	genome.wustl.edu	37	13	74269789	74269789	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007249.4	-1	validated	p.C349W	1.000	117	0%	129	36.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
CUL4A	8451	genome.wustl.edu	37	13	113909065	113909065	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008895.1	+1	validated	p.E604A	1.000	159	0%	161	40.4%	6	83.3%	benign(0.015)	tolerated(0.14)	neutral(0.250)	HMMPfam_Cullin,superfamily_Cullin homology domain
TMCO3	55002	genome.wustl.edu	37	13	114164631	114164631	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017905.4	+1	validated	p.L373V	0.056	348	0%	292	31.8%	3	0%	possibly_damaging(0.82)	tolerated(0.07)	deleterious(0.629)	HMMPfam_Na_H_Exchanger
RPGRIP1	57096	genome.wustl.edu	37	14	21794033	21794033	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020366.3	+1	reviewed	p.E804A	1.000	215	0%	194	40.7%	0	-	probably_damaging(0.996)	tolerated(0.41)	deleterious(0.477)	HMMPfam_C2,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
SUPT16H	11198	genome.wustl.edu	37	14	21841531	21841531	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007192.3	-1	reviewed	p.E42G	1.000	239	0%	274	17.5%	2	0%	possibly_damaging(0.927)	deleterious(0.04)	deleterious(0.724)	NULL
CPNE6	9362	genome.wustl.edu	37	14	24543334	24543334	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006032.2	+1	reviewed	p.T141	1.000	122	0%	110	36.4%	0	-	-	-	-	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
HEATR5A	25938	genome.wustl.edu	37	14	31813162	31813162	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015473.2	-1	validated	p.Q763	1.000	166	0%	180	42.8%	0	-	-	-	-	superfamily_ARM repeat
MIA2	117153	genome.wustl.edu	37	14	39722148	39722148	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_054024.3	+1	validated	p.S588	0.034	288	0%	272	39.3%	0	-	-	-	-	NULL
TRIM9	114088	genome.wustl.edu	37	14	51560935	51560935	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015163.5	-1	reviewed	p.C241	0.997	163	0.6%	141	36.9%	0	-	-	-	-	HMMPfam_zf-B_box,HMMSmart_SM00336,superfamily_B-box zinc-binding domain
NID2	22795	genome.wustl.edu	37	14	52474605	52474605	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007361.3	-1	validated	p.L1268P	1.000	427	0%	417	38.8%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ldl_recept_b,HMMSmart_SM00135,superfamily_YWTD domain
C14orf37	145407	genome.wustl.edu	37	14	58563614	58563614	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001872.2	-1	predicted	p.D639	0.454	728	0.1%	803	43.3%	0	-	-	-	-	NULL
DACT1	51339	genome.wustl.edu	37	14	59113586	59113586	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016651.5	+1	validated	p.Y749H	1.000	165	0%	134	44.8%	2	0%	probably_damaging(0.998)	tolerated(0.17)	deleterious(0.533)	NULL
C14orf135	64430	genome.wustl.edu	37	14	60582712	60582712	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022495.5	+1	validated	p.V270	0.001	243	0%	289	46.4%	3	33.3%	-	-	-	NULL
ENSG00000184902	0	genome.wustl.edu	37	14	61246821	61246821	+	Missense_Mutation	SNP	C	C	G	rs141195303	by1000genomes	TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000331888	+1	known	p.I42M	0.999	284	0%	262	46.9%	0	-	-	-	-	HMMPfam_HORMA,superfamily_The spindle assembly checkpoint protein mad2
SYNE2	23224	genome.wustl.edu	37	14	64630230	64630230	+	Silent	SNP	C	C	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182914.2	+1	reviewed	p.G5470	0.000	229	0%	169	42%	1	100%	-	-	-	NULL
FAM71D	161142	genome.wustl.edu	37	14	67671518	67671518	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173526.2	+1	validated	p.V208	0.000	176	0%	166	49.4%	0	-	-	-	-	NULL
KCNK13	56659	genome.wustl.edu	37	14	90650790	90650790	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022054.2	+1	reviewed	p.Y224H	1.000	250	0%	209	44%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ion_trans_2,superfamily_Voltage-gated potassium channels
C14orf49	161176	genome.wustl.edu	37	14	95921948	95921948	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152592.3	-1	validated	p.E301D	0.989	129	0%	74	45.9%	0	-	benign(0.353)	tolerated(0.08)	neutral(0.411)	HMMSmart_SM00150,superfamily_Spectrin repeat
AHNAK2	113146	genome.wustl.edu	37	14	105407368	105407368	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138420.2	-1	validated	p.E4807A	0.000	143	0%	114	38.6%	0	-	possibly_damaging(0.866)	tolerated(0.08)	deleterious(0.635)	NULL
BRF1	2972	genome.wustl.edu	37	14	105766863	105766863	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001519.2	-1	reviewed	p.N35I	1.000	16	0%	12	41.7%	1	0%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_TFIIB_Zn_Ribbon,superfamily_Zinc beta-ribbon
LOC729722	729722	genome.wustl.edu	37	15	20090271	20090271	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001716538.2	+1	model	p.S230	0.005	26	0%	24	25%	0	-	-	-	-	NULL
FMN1	342184	genome.wustl.edu	37	15	33218447	33218447	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001103184.2	-1	validated	p.D829Y	1.000	137	0%	169	46.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00498,HMMPfam_FH2,superfamily_Formin homology 2 domain (FH2 domain)
RYR3	6263	genome.wustl.edu	37	15	34145799	34145799	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001036.3	+1	validated	p.A4572V	1.000	246	0%	243	45.3%	0	-	possibly_damaging(0.896)	-	-	NULL
C15orf41	84529	genome.wustl.edu	37	15	36950044	36950044	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130010.1	+1	validated	p.A95V	1.000	371	0%	321	38.9%	0	-	benign(0)	tolerated(0.07)	neutral(0.319)	NULL
MAPKBP1	23005	genome.wustl.edu	37	15	42107465	42107465	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000512970	+1	known	p.P330L	0.898	189	0%	171	39.2%	0	-	benign(0.001)	tolerated(0.05)	neutral(0.345)	NULL
CASC4	113201	genome.wustl.edu	37	15	44671901	44671901	+	Silent	SNP	T	T	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138423.2	+1	reviewed	p.P272	1.000	246	0%	292	36.6%	1	100%	-	-	-	NULL
PATL2	197135	genome.wustl.edu	37	15	44961718	44961718	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145112.1	-1	validated	p.R307Q	0.017	152	0%	133	39.1%	0	-	benign(0.005)	tolerated(0.59)	neutral(0.004)	HMMPfam_PAT1
SLC12A1	6557	genome.wustl.edu	37	15	48500332	48500333	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000338.2	+1	reviewed	p.N141fs	0.217:0.139	-	-	-	-	-	-	-	-	-	HMMPfam_AA_permease_N
SLC12A1	6557	genome.wustl.edu	37	15	48593518	48593518	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000338.2	+1	reviewed	p.R1035C	1.000	215	0%	172	33.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FBN1	2200	genome.wustl.edu	37	15	48766457	48766458	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000138.4	-1	reviewed	p.C1402fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMSmart_SM00179,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,PatternScan_EGF_2,HMMPfam_EGF_CA,superfamily_EGF/Laminin
TRPM7	54822	genome.wustl.edu	37	15	50905936	50905936	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017672.4	-1	reviewed	p.F580L	1.000	355	0%	413	45.8%	0	-	probably_damaging(0.991)	tolerated(0.37)	neutral(0.463)	NULL
SLTM	79811	genome.wustl.edu	37	15	59180619	59180619	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024755.2	-1	validated	p.P780	0.998	265	0%	286	44.8%	12	33.3%	-	-	-	NULL
CLPX	10845	genome.wustl.edu	37	15	65471386	65471386	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006660.3	-1	provisional	p.S82P	1.000	339	0%	378	40.2%	3	100%	benign(0.085)	tolerated(0.2)	neutral(0.055)	NULL
DENND4A	10260	genome.wustl.edu	37	15	65998519	65998519	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144823.1	-1	validated	p.D666A	1.000	419	0%	432	44.2%	2	50%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
DIS3L	115752	genome.wustl.edu	37	15	66612978	66612978	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133375.3	+1	validated	p.R329C	1.000	458	0%	600	41.2%	2	0%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
DIS3L	115752	genome.wustl.edu	37	15	66618334	66618334	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133375.3	+1	validated	p.K528	0.000	162	0%	183	39.9%	1	0%	-	-	-	HMMPfam_RNB
ITGA11	22801	genome.wustl.edu	37	15	68641180	68641180	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004439.1	-1	reviewed	p.S373	0.216	164	0%	118	44.9%	0	-	-	-	-	superfamily_Integrin alpha N-terminal domain
ARID3B	10620	genome.wustl.edu	37	15	74885486	74885486	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006465.2	+1	reviewed	p.R476	0.588	95	0%	63	49.2%	0	-	-	-	-	NULL
CSPG4	1464	genome.wustl.edu	37	15	75982846	75982846	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001897.4	-1	reviewed	p.D187G	0.490	20	0%	10	50%	0	-	benign(0.001)	tolerated(0.25)	neutral(0.037)	superfamily_Concanavalin A-like lectins/glucanases
AGBL1	123624	genome.wustl.edu	37	15	86807686	86807686	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152336.2	+1	validated	p.L382	0.000	116	0%	115	45.2%	0	-	-	-	-	NULL
CIB1	10519	genome.wustl.edu	37	15	90774331	90774331	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006384.3	-1	validated	p.D154G	0.369	145	0%	116	44.8%	534	48.5%	benign(0.014)	tolerated(0.05)	neutral(0.346)	HMMSmart_SM00054,HMMPfam_efhand,superfamily_EF-hand
TARSL2	123283	genome.wustl.edu	37	15	102224404	102224404	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152334.2	-1	validated	p.E508	1.000	205	0%	146	40.4%	1	0%	-	-	-	HMMPfam_tRNA-synt_2b,superfamily_Class II aaRS and biotin synthetases
AXIN1	8312	genome.wustl.edu	37	16	347220	347221	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003502.2	-1	reviewed	p.V598fs	0.351:0.802	-	-	-	-	-	-	-	-	-	NULL
CACNA1H	8912	genome.wustl.edu	37	16	1245045	1245045	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021098.2	+1	reviewed	p.D125N	1.000	61	0%	38	47.4%	0	-	probably_damaging(0.995)	tolerated(0.09)	deleterious(0.754)	superfamily_Voltage-gated potassium channels
CACNA1H	8912	genome.wustl.edu	37	16	1265318	1265318	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021098.2	+1	reviewed	p.A1706T	0.744	138	0%	88	27.3%	0	-	possibly_damaging(0.887)	tolerated(0.28)	neutral(0.378)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
IFT140	9742	genome.wustl.edu	37	16	1561036	1561036	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014714.3	-1	validated	p.R1433H	0.027	69	0%	61	37.7%	43	44.1%	benign(0.041)	tolerated(0.08)	neutral(0.302)	NULL
KREMEN2	79412	genome.wustl.edu	37	16	3018003	3018003	+	Silent	SNP	G	G	A	rs192742743	by1000genomes	TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_172229.1	+1	reviewed	p.S457	0.147	11	0%	12	50%	13	46.1%	-	-	-	NULL
HCFC1R1	54985	genome.wustl.edu	37	16	3073920	3073920	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001002018.1	-1	validated	p.Q8R	0.988	54	0%	61	29.5%	185	30.2%	unknown(0)	deleterious(0.01)	-	NULL
ZNF263	10127	genome.wustl.edu	37	16	3340126	3340127	+	Frame_Shift_Ins	INS	-	-	GA	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005741.4	+1	validated	p.R544fs	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
DNAJA3	9093	genome.wustl.edu	37	16	4491421	4491421	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005147.4	+1	validated	p.S159P	0.826	152	0%	184	32.1%	2	0%	possibly_damaging(0.84)	tolerated(0.08)	deleterious(0.621)	superfamily_DnaJ_N
KIAA0430	9665	genome.wustl.edu	37	16	15709818	15709818	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014647.3	-1	validated	p.V1041A	0.994	168	0.6%	198	41.9%	2	0%	benign(0.075)	tolerated(0.1)	neutral(0.291)	NULL
DNAH3	55567	genome.wustl.edu	37	16	21136660	21136660	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017539.1	-1	provisional	p.S414T	0.008	126	0%	151	45.7%	0	-	benign(0)	tolerated(0.59)	neutral(0.004)	NULL
GTF3C1	2975	genome.wustl.edu	37	16	27500479	27500479	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001520.3	-1	validated	p.D1105G	1.000	224	0%	207	42.5%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
RRN3P2	653390	genome.wustl.edu	37	16	29110458	29110458	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000427965	+1	known	p.W375R	0.991	125	0%	176	45.5%	1	0%	benign(0)	tolerated(1)	-	HMMPfam_RRN3
LOC100133019	100133019	genome.wustl.edu	37	16	29825343	29825343	+	RNA	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XR_078522.1	-1	model	NULL	0.076	35	0%	33	54.5%	0	-	-	-	-	-
TAOK2	9344	genome.wustl.edu	37	16	29996994	29996994	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016151.2	+1	validated	p.P602S	1.000	18	0%	21	28.6%	10	20%	benign(0.001)	tolerated(0.09)	neutral(0.296)	NULL
BCL7C	9274	genome.wustl.edu	37	16	30899188	30899188	+	Nonstop_Mutation	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004765.2	-1	reviewed	p.*218R	1.000	71	0%	66	43.9%	238	26%	-	-	-	NULL
ZNF646	9726	genome.wustl.edu	37	16	31089636	31089636	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014699.3	+1	validated	p.R664H	0.888	72	0%	107	44.9%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF843	283933	genome.wustl.edu	37	16	31448156	31448156	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136509.1	-1	provisional	p.P5	0.000	83	0%	70	42.9%	0	-	-	-	-	NULL
TGFB1I1	7041	genome.wustl.edu	37	16	31484827	31484827	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042454.2	+1	reviewed	p.R27C	0.882	79	0%	47	44.7%	8	25%	probably_damaging(0.997)	deleterious(0.02)	deleterious(0.849)	NULL
NUP93	9688	genome.wustl.edu	37	16	56872881	56872881	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014669.3	+1	validated	p.I679R	0.998	445	0%	455	24.2%	28	35.7%	benign(0.173)	tolerated(0.39)	neutral(0.032)	HMMPfam_Nic96
CDH5	1003	genome.wustl.edu	37	16	66436892	66436892	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001795.3	+1	reviewed	p.Y725	0.967	94	0%	59	47.5%	5	40%	-	-	-	HMMPfam_Cadherin_C
CCDC79	283847	genome.wustl.edu	37	16	66824832	66824832	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136505.1	-1	provisional	p.H41R	1.000	243	0%	234	51.3%	0	-	probably_damaging(0.978)	tolerated(0.35)	neutral(0.441)	superfamily_ARM repeat
FAM65A	79567	genome.wustl.edu	37	16	67574095	67574095	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024519.2	+1	validated	p.R185H	0.987	68	0%	43	62.8%	1	0%	possibly_damaging(0.806)	tolerated(0.12)	deleterious(0.564)	NULL
TSNAXIP1	55815	genome.wustl.edu	37	16	67859872	67859872	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018430.2	+1	validated	p.L292R	0.968	91	0%	55	20%	5	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
EDC4	23644	genome.wustl.edu	37	16	67911496	67911496	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014329.3	+1	validated	p.E243fs	0.120	-	-	-	-	-	-	-	-	-	superfamily_WD40 repeat-like
CDH1	999	genome.wustl.edu	37	16	68856009	68856009	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004360.3	+1	reviewed	p.N606I	0.003	198	0%	136	19.1%	3	33.3%	possibly_damaging(0.631)	deleterious(0.03)	deleterious(0.585)	HMMPfam_Cadherin,superfamily_Cadherin-like
GLG1	2734	genome.wustl.edu	37	16	74537504	74537504	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012201.5	-1	validated	p.L233	0.938	291	0%	216	27.8%	0	-	-	-	-	HMMPfam_Cys_rich_FGFR
PLCG2	5336	genome.wustl.edu	37	16	81902887	81902887	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002661.2	+1	validated	p.L183P	1.000	344	0%	243	15.6%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_SSF47473
MBTPS1	8720	genome.wustl.edu	37	16	84088249	84088249	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003791.2	-1	reviewed	p.G988	0.997	40	0%	42	57.1%	39	74.3%	-	-	-	NULL
LOC654780	654780	genome.wustl.edu	37	16	84228663	84228663	+	RNA	SNP	G	G	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XR_040612.2	-1	model	NULL	0.000	62	0%	37	56.8%	0	-	-	-	-	-
ZC3H18	124245	genome.wustl.edu	37	16	88643910	88643910	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144604.3	+1	validated	p.E127*	1.000	108	0%	118	47.5%	3	33.3%	-	-	-	NULL
TEKT1	83659	genome.wustl.edu	37	17	6703395	6703395	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_053285.1	-1	reviewed	p.E403G	0.532	128	0%	111	41.4%	71	56.3%	benign(0)	tolerated(0.42)	neutral(0.014)	NULL
DNAH9	1770	genome.wustl.edu	37	17	11556157	11556157	+	Silent	SNP	G	G	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001372.3	+1	reviewed	p.V811	0.998	272	0%	245	40.8%	0	-	-	-	-	NULL
DNAH9	1770	genome.wustl.edu	37	17	11787008	11787008	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001372.3	+1	reviewed	p.T3638A	0.998	195	0%	188	43.6%	0	-	probably_damaging(0.959)	tolerated(0.63)	neutral(0.406)	NULL
TOP3A	7156	genome.wustl.edu	37	17	18211733	18211733	+	Silent	SNP	A	A	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000412083	-1	known	p.Y62N	0.990	217	0%	259	37.1%	0	-	-	-	-	superfamily_Prokaryotic type I DNA topoisomerase,HMMSmart_SM00493,HMMPfam_Toprim
SLC6A4	6532	genome.wustl.edu	37	17	28539827	28539827	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001045.4	-1	reviewed	p.I379V	1.000	197	0.5%	191	47.1%	0	-	benign(0.115)	tolerated(0.27)	neutral(0.043)	HMMPfam_SNF
NF1	4763	genome.wustl.edu	37	17	29556148	29556148	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042492.2	+1	reviewed	p.N839D	1.000	118	0%	107	34.6%	1	0%	possibly_damaging(0.723)	deleterious(0.01)	deleterious(0.668)	NULL
MYO1D	4642	genome.wustl.edu	37	17	30821866	30821866	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015194.1	-1	provisional	p.T978A	1.000	122	0%	78	29.5%	2	0%	benign(0.079)	tolerated(0.38)	neutral(0.023)	HMMPfam_Myosin_TH1
LIG3	3980	genome.wustl.edu	37	17	33328409	33328409	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013975.2	+1	reviewed	p.L822P	0.996	210	0%	192	40.6%	8	62.5%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	NULL
NLE1	54475	genome.wustl.edu	37	17	33464889	33464889	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018096.3	-1	validated	p.S161G	0.992	70	0%	52	30.8%	1	0%	possibly_damaging(0.736)	tolerated(0.08)	deleterious(0.569)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
MYO19	80179	genome.wustl.edu	37	17	34854144	34854144	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025109.5	-1	validated	p.Q708R	0.870	71	0%	85	45.9%	18	50%	benign(0.027)	tolerated(0.07)	neutral(0.321)	NULL
ERBB2	2064	genome.wustl.edu	37	17	37879658	37879658	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004448.2	+1	reviewed	p.R678Q	1.000	193	0.5%	159	41.5%	7	28.5%	possibly_damaging(0.599)	tolerated(0.3)	neutral(0.236)	NULL
KRTAP9-8	83901	genome.wustl.edu	37	17	39394631	39394632	+	Frame_Shift_Ins	INS	-	-	TTGT	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031963.2	+1	reviewed	p.T110fs	0.001:0.001	-	-	-	-	-	-	-	-	-	HMMPfam_Keratin_B2
BRCA1	672	genome.wustl.edu	37	17	41244451	41244451	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007294.3	-1	reviewed	p.E1033K	0.008	265	0%	242	35.5%	0	-	possibly_damaging(0.915)	deleterious(0.04)	deleterious(0.716)	NULL
KANSL1	284058	genome.wustl.edu	37	17	44144915	44144915	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015443.2	-1	validated	p.T551I	1.000	159	0%	166	43.4%	0	-	benign(0.055)	tolerated(0.15)	neutral(0.244)	NULL
MYL4	4635	genome.wustl.edu	37	17	45286872	45286872	+	Silent	SNP	C	C	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001002841.1	+1	reviewed	p.A28	0.650	177	0%	154	38.3%	0	-	-	-	-	NULL
ATP5G1	516	genome.wustl.edu	37	17	46973123	46973123	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001002027.1	+1	reviewed	p.A135T	1.000	274	0%	269	41.3%	275	50.9%	benign(0.003)	tolerated(0.1)	neutral(0.286)	HMMPfam_ATP-synt_C,superfamily_F1F0 ATP synthase subunit C
COL1A1	1277	genome.wustl.edu	37	17	48268263	48268263	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000088.3	-1	reviewed	p.A753V	1.000	157	0%	142	47.2%	56	1.7%	benign(0.197)	tolerated(0.27)	neutral(0.052)	HMMPfam_Collagen
ACE	1636	genome.wustl.edu	37	17	61555395	61555395	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000789.2	+1	reviewed	p.R118H	0.104	41	0%	24	75%	1	0%	possibly_damaging(0.714)	deleterious(0)	deleterious(0.703)	"HMMPfam_Peptidase_M2,superfamily_Metalloproteases (""zincins"") catalytic domain"
CACNG5	27091	genome.wustl.edu	37	17	64881335	64881335	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145811.1	+1	reviewed	p.Q269R	1.000	68	0%	34	41.2%	0	-	benign(0.01)	tolerated(0.27)	neutral(0.034)	NULL
C17orf70	80233	genome.wustl.edu	37	17	79512848	79512848	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025161.5	-1	validated	p.V594A	0.000	36	0%	30	43.3%	38	47.3%	benign(0.01)	tolerated(0.14)	neutral(0.250)	NULL
RAB31	11031	genome.wustl.edu	37	18	9775298	9775298	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006868.3	+1	validated	p.S21	1.000	388	0%	409	20.5%	1	0%	-	-	-	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
RAB31	11031	genome.wustl.edu	37	18	9859241	9859242	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006868.3	+1	validated	p.L169fs	1.000:0.999	-	-	-	-	-	-	-	-	-	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
TXNDC2	84203	genome.wustl.edu	37	18	9887621	9887621	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098529.1	+1	validated	p.I382T	0.000	505	0%	539	40.6%	0	-	benign(0.195)	tolerated(0.29)	neutral(0.048)	NULL
ZNF521	25925	genome.wustl.edu	37	18	22642696	22642696	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015461.2	-1	validated	p.M1306L	1.000	142	0%	125	32%	2	0%	benign(0)	tolerated(1)	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
MAPRE2	10982	genome.wustl.edu	37	18	32706967	32706967	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014268.2	+1	reviewed	p.S222	0.128	217	0%	227	38.3%	0	-	-	-	-	NULL
SNORD58B	26790	genome.wustl.edu	37	18	47018096	47018096	+	RNA	SNP	G	G	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_002572.1	-1	provisional	NULL	1.000	20	0%	15	33.3%	12	25%	-	-	-	-
CXXC1	30827	genome.wustl.edu	37	18	47809057	47809057	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001101654.1	-1	validated	p.M630T	1.000	129	0%	103	50.5%	122	36.8%	possibly_damaging(0.948)	deleterious(0.01)	deleterious(0.796)	NULL
ONECUT2	9480	genome.wustl.edu	37	18	55103476	55103477	+	In_Frame_Ins	INS	-	-	CAC	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004852.2	+1	reviewed	p.180in_frame_insH	0.715:1.000	-	-	-	-	-	-	-	-	-	NULL
FECH	2235	genome.wustl.edu	37	18	55240568	55240568	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001012515.2	-1	reviewed	p.N81S	1.000	361	0%	337	41.8%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ferrochelatase,superfamily_Chelatase
ALPK2	115701	genome.wustl.edu	37	18	56246440	56246440	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052947.3	-1	validated	p.K523fs	0.000	-	-	-	-	-	-	-	-	-	NULL
ZCCHC2	54877	genome.wustl.edu	37	18	60242739	60242739	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017742.4	+1	validated	p.Y1142F	1.000	216	0%	233	43.8%	0	-	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	HMMPfam_zf-CCHC,HMMSmart_ZnF_C2HC
CCDC102B	79839	genome.wustl.edu	37	18	66504141	66504141	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001093729.1	+1	validated	p.H47	0.000	128	0%	136	35.3%	0	-	-	-	-	NULL
CCDC102B	79839	genome.wustl.edu	37	18	66542023	66542023	+	Splice_Site	SNP	G	G	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001093729.1	+1	validated	e4+1	1.000	198	0.5%	219	40.6%	0	-	-	-	-	-
RTTN	25914	genome.wustl.edu	37	18	67727215	67727215	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173630.3	-1	validated	p.K1604I	0.001	488	0%	577	41.6%	0	-	possibly_damaging(0.843)	tolerated(0.12)	deleterious(0.584)	NULL
ZNF236	7776	genome.wustl.edu	37	18	74563832	74563832	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007345.3	+1	validated	p.C98	1.000	330	0%	376	48.9%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
SBNO2	22904	genome.wustl.edu	37	19	1149436	1149436	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014963.2	-1	validated	p.A33	0.069	176	0%	201	46.8%	1	0%	-	-	-	NULL
AES	166	genome.wustl.edu	37	19	3053823	3053823	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198969.1	-1	reviewed	p.S263	0.631	36	0%	20	45%	131	37.4%	-	-	-	NULL
MATK	4145	genome.wustl.edu	37	19	3784364	3784364	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002378.3	-1	reviewed	p.D74G	1.000	76	0%	50	18%	2	0%	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SH3
PLIN4	729359	genome.wustl.edu	37	19	4510506	4510506	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080400.1	-1	provisional	p.L1142	0.000	160	0%	122	37.7%	0	-	-	-	-	NULL
LONP1	9361	genome.wustl.edu	37	19	5699104	5699104	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004793.2	-1	reviewed	p.L540R	1.000	30	0%	23	52.2%	21	38%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_AAA,HMMPfam_AAA,superfamily_SSF52540
CLPP	8192	genome.wustl.edu	37	19	6364614	6364614	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006012.2	+1	reviewed	p.S173	1.000	26	0%	37	32.4%	84	48.8%	-	-	-	HMMPfam_CLP_protease,PatternScan_CLP_PROTEASE_HIS,superfamily_SSF52096
INSR	3643	genome.wustl.edu	37	19	7122984	7122984	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000208.2	-1	reviewed	p.V1092A	1.000	67	0%	44	45.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
DNM2	1785	genome.wustl.edu	37	19	10904494	10904494	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005360.1	+1	reviewed	p.R364H	1.000	141	0%	148	16.9%	4	0%	benign(0.133)	tolerated(0.07)	neutral(0.330)	HMMPfam_Dynamin_M
LPHN1	22859	genome.wustl.edu	37	19	14263697	14263697	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008701.2	-1	reviewed	p.R1113C	1.000	178	0%	208	37.5%	3	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
NOTCH3	4854	genome.wustl.edu	37	19	15278105	15278105	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000435.2	-1	reviewed	p.G1773S	1.000	107	0%	117	24.8%	6	0%	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	NULL
NOTCH3	4854	genome.wustl.edu	37	19	15302845	15302845	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000435.2	-1	reviewed	p.A202V	0.999	46	0%	26	42.3%	1	0%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,superfamily_EGF/Laminin
LOC100287986	100287986	genome.wustl.edu	37	19	15695457	15695457	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343618.1	-1	model	p.V458M	0.000	47	0%	31	35.5%	0	-	-	-	-	NULL
SLC27A1	376497	genome.wustl.edu	37	19	17612103	17612103	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198580.1	+1	provisional	p.M553T	1.000	37	0%	29	41.4%	5	60%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF56801
FCHO1	23149	genome.wustl.edu	37	19	17894916	17894916	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015122.2	+1	validated	p.P700S	1.000	47	0%	38	26.3%	3	0%	probably_damaging(1)	tolerated(0.38)	deleterious(0.517)	NULL
ZNF93	81931	genome.wustl.edu	37	19	20044399	20044399	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031218.3	+1	validated	p.Y212C	0.000	114	0%	95	30.5%	0	-	benign(0)	tolerated(0.19)	neutral(0.050)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF254	9534	genome.wustl.edu	37	19	24310141	24310141	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_203282.2	+1	validated	p.S447P	0.001	168	0%	161	35.4%	4	0%	unknown(0)	deleterious(0.02)	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
MLL4	9757	genome.wustl.edu	37	19	36210860	36210860	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014727.1	+1	reviewed	p.Q204R	0.321	28	0%	30	50%	0	-	unknown(0)	-	-	NULL
C19orf55	148137	genome.wustl.edu	37	19	36258920	36258920	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039887.1	+1	predicted	p.S391	0.000	24	0%	14	57.1%	0	-	-	-	-	NULL
CATSPERG	57828	genome.wustl.edu	37	19	38861408	38861408	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021185.4	+1	validated	p.A1152	0.000	111	0%	109	49.5%	2	50%	-	-	-	NULL
RYR1	6261	genome.wustl.edu	37	19	39003092	39003092	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000540.2	+1	reviewed	p.I3147	0.999	28	0%	18	33.3%	0	-	-	-	-	NULL
SAMD4B	55095	genome.wustl.edu	37	19	39860602	39860602	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018028.2	+1	provisional	p.S168	0.722	29	0%	24	33.3%	3	66.6%	-	-	-	NULL
ENSG00000229113	0	genome.wustl.edu	37	19	42028226	42028226	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000439847	-1	known	p.G42	1.000	171	0%	217	41.5%	0	-	-	-	-	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
GSK3A	2931	genome.wustl.edu	37	19	42736801	42736801	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019884.2	-1	validated	p.A378T	0.991	143	0%	122	39.3%	54	35.1%	benign(0.005)	deleterious(0.02)	neutral(0.383)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
PSG4	5672	genome.wustl.edu	37	19	43698612	43698612	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002780.3	-1	validated	p.S375P	0.000	677	0%	655	41.8%	0	-	benign(0.002)	tolerated(0.17)	neutral(0.059)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
PSG4	5672	genome.wustl.edu	37	19	43698748	43698748	+	Splice_Site	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002780.3	-1	validated	e5-2	0.872	314	0%	253	21.3%	0	-	-	-	-	-
SIX5	147912	genome.wustl.edu	37	19	46268939	46268939	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175875.4	-1	reviewed	p.E680	0.000	36	0%	26	42.3%	11	63.6%	-	-	-	NULL
PTGIR	5739	genome.wustl.edu	37	19	47126947	47126947	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000960.3	-1	reviewed	p.P179L	0.002	7	0.000	11	0.636	0	-	benign(0.004)	tolerated(0.3)	neutral(0.029)	HMMPfam_7tm_1,superfamily_SSF81321
LOC100287338	100287338	genome.wustl.edu	37	19	47844629	47844629	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343689.1	-1	model	p.A125T	0.003	74	0%	86	53.5%	1	100%	-	-	-	NULL
SIGLEC16	400709	genome.wustl.edu	37	19	50475113	50475113	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000417280	+1	known	p.L373P	0.000	92	0%	57	45.6%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_Immunoglobulin
PPP2R1A	5518	genome.wustl.edu	37	19	52705239	52705239	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000391791	+1	known	p.W19*	1.000	222	0%	153	43.1%	17	41.1%	-	-	-	NULL
LOC388559	388559	genome.wustl.edu	37	19	53418469	53418469	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_496322.5	-1	model	p.Y41C	0.000	519	0%	493	46.2%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF765	91661	genome.wustl.edu	37	19	53905409	53905409	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040185.1	+1	provisional	p.V36G	0.866	610	0.2%	639	36.8%	1	0%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF71	58491	genome.wustl.edu	37	19	57133420	57133420	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021216.4	+1	validated	p.M255I	0.035	71	0%	47	48.9%	3	33.3%	possibly_damaging(0.906)	tolerated(0.06)	deleterious(0.682)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF587	84914	genome.wustl.edu	37	19	58353468	58353470	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	AAG	AAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343662.1	+1	model	p.K422in_frame_del	0.015:0.000:0.000	-	-	-	-	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
SLC23A2	9962	genome.wustl.edu	37	20	4837809	4837809	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005116.5	-1	reviewed	p.V588L	0.109	472	0%	442	36.4%	2	100%	benign(0.025)	tolerated(0.73)	neutral(0.003)	NULL
GZF1	64412	genome.wustl.edu	37	20	23345920	23345921	+	In_Frame_Ins	INS	-	-	GAG	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022482.3	+1	validated	p.304in_frame_insE	0.000:0.114	-	-	-	-	-	-	-	-	-	NULL
PYGB	5834	genome.wustl.edu	37	20	25261707	25261707	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002862.3	+1	reviewed	p.N454	0.405	383	0%	335	18.5%	2	0%	-	-	-	HMMPfam_Phosphorylase,superfamily_SSF53756
KIAA1755	85449	genome.wustl.edu	37	20	36842018	36842018	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001029864.1	-1	predicted	p.P1010H	0.880	41	2.4%	30	53.3%	3	0%	possibly_damaging(0.942)	deleterious(0.02)	deleterious(0.770)	NULL
KCNK15	60598	genome.wustl.edu	37	20	43379195	43379195	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022358.2	+1	reviewed	p.A237T	1.000	100	0%	61	26.2%	9	55.5%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_Ion_trans_2,superfamily_SSF81324
ACOT8	10005	genome.wustl.edu	37	20	44472335	44472335	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005469.2	-1	reviewed	p.C224	1.000	37	0%	31	45.2%	44	56.8%	-	-	-	HMMPfam_Acyl_CoA_thio,superfamily_SSF54637
APCDD1L	164284	genome.wustl.edu	37	20	57036237	57036237	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153360.1	-1	provisional	p.N372S	1.000	30	0%	42	50%	0	-	probably_damaging(0.999)	tolerated(0.08)	deleterious(0.790)	NULL
SS18L1	26039	genome.wustl.edu	37	20	60747852	60747852	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198935.1	+1	validated	p.G344D	1.000	72	0%	43	41.9%	0	-	unknown(0)	deleterious(0)	-	NULL
LAMA5	3911	genome.wustl.edu	37	20	60885328	60885328	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005560.3	-1	reviewed	p.L3547P	1.000	29	0%	38	13.2%	142	31.6%	benign(0.007)	-	-	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases
GATA5	140628	genome.wustl.edu	37	20	61048636	61048636	+	Splice_Site	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080473.4	-1	reviewed	e2-2	0.954	45	0%	33	48.5%	2	50%	-	-	-	-
USP25	29761	genome.wustl.edu	37	21	17202852	17202852	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013396.3	+1	validated	p.L566	1.000	224	0%	174	42%	1	0%	-	-	-	HMMPfam_UCH,superfamily_Cysteine proteinases
GRIK1	2897	genome.wustl.edu	37	21	31015204	31015204	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000830.3	-1	reviewed	p.Q347R	1.000	130	0%	114	38.6%	0	-	probably_damaging(0.975)	tolerated(0.14)	deleterious(0.666)	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I
MIS18A	54069	genome.wustl.edu	37	21	33642087	33642087	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018944.2	-1	validated	p.Q184	0.687	154	0%	178	37.1%	5	40%	-	-	-	NULL
SON	6651	genome.wustl.edu	37	21	34923245	34923245	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138927.1	+1	reviewed	p.P570S	1.000	75	1.3%	60	26.7%	0	-	possibly_damaging(0.82)	deleterious(0.05)	deleterious(0.656)	NULL
SON	6651	genome.wustl.edu	37	21	34926070	34926070	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000436227	+1	known	p.K506R	0.909	138	0%	155	43.9%	2	0%	-	-	-	NULL
BRWD1	54014	genome.wustl.edu	37	21	40652167	40652167	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018963.3	-1	reviewed	p.P280L	1.000	118	0%	154	39%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
PDXK	8566	genome.wustl.edu	37	21	45161452	45161452	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000467908	+1	known	p.P7	0.000	72	0%	51	35.3%	0	-	-	-	-	superfamily_SSF53613
DGCR8	54487	genome.wustl.edu	37	22	20079036	20079036	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022720.5	+1	validated	p.A462V	1.000	266	0%	237	40.1%	2	50%	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	NULL
SNAP29	9342	genome.wustl.edu	37	22	21242012	21242012	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004782.3	+1	reviewed	p.G222V	0.999	162	0%	273	49.5%	60	41.6%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_SNARE,HMMSmart_t_SNARE
SMTN	6525	genome.wustl.edu	37	22	31484062	31484062	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_134270.1	+1	reviewed	p.R55C	1.000	42	0%	42	45.2%	7	28.5%	unknown(0)	deleterious(0)	-	NULL
TEX33	339669	genome.wustl.edu	37	22	37387598	37387598	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000442538	-1	known	p.F82L	1.000	311	0%	289	40.8%	0	-	-	-	-	NULL
MKL1	57591	genome.wustl.edu	37	22	40816954	40816954	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020831.3	-1	validated	p.A260T	1.000	286	0%	237	44.3%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
EP300	2033	genome.wustl.edu	37	22	41566475	41566475	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001429.3	+1	reviewed	p.H1451R	1.000	245	0%	260	40%	0	-	unknown(0)	deleterious(0)	-	HMMPfam_DUF906
SELO	83642	genome.wustl.edu	37	22	50647059	50647059	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031454.1	+1	reviewed	p.D285N	0.996	103	1%	110	33.6%	28	50%	possibly_damaging(0.799)	tolerated(0.09)	deleterious(0.597)	HMMPfam_UPF0061
PHEX	5251	genome.wustl.edu	37	X	22186489	22186489	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000444.4	+1	reviewed	p.N489D	1.000	390	0%	426	43.7%	0	-	benign(0.094)	tolerated(0.68)	neutral(0.009)	superfamily_SSF55486
DCAF8L2	347442	genome.wustl.edu	37	X	27765998	27765998	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136533.1	+1	provisional	p.D329G	1.000	236	0%	216	40.3%	0	-	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like
KDM6A	7403	genome.wustl.edu	37	X	44949116	44949117	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021140.2	+1	reviewed	p.W1227fs	1.000:0.998	-	-	-	-	-	-	-	-	-	HMMSmart_JmjC,HMMPfam_JmjC
USP11	8237	genome.wustl.edu	37	X	47107324	47107324	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004651.3	+1	reviewed	p.N963Y	0.203	30	0%	27	37%	149	30.8%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
GSPT2	23708	genome.wustl.edu	37	X	51486911	51486911	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018094.4	+1	reviewed	p.V63	0.984	64	0%	43	48.8%	3	0%	-	-	-	HMMPfam_PAM2
IQSEC2	23096	genome.wustl.edu	37	X	53264971	53264971	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001111125.1	-1	validated	p.T1165	1.000	100	0%	83	36.1%	0	-	-	-	-	NULL
HUWE1	10075	genome.wustl.edu	37	X	53565906	53565906	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031407.4	-1	reviewed	p.L3923S	1.000	236	0%	248	35.9%	14	0%	unknown(0)	tolerated(0.74)	-	NULL
PHF8	23133	genome.wustl.edu	37	X	54043099	54043099	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000396282	-1	known	p.L79S	1.000	388	0%	364	47%	0	-	-	-	-	superfamily_Clavaminate synthase-like
ITIH6	347365	genome.wustl.edu	37	X	54776374	54776374	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198510.2	-1	reviewed	p.H1299R	0.999	42	0%	34	41.2%	0	-	possibly_damaging(0.819)	deleterious(0.04)	deleterious(0.658)	NULL
APEX2	27301	genome.wustl.edu	37	X	55032975	55032975	+	Missense_Mutation	SNP	C	C	T	rs187479006	by1000genomes	TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014481.2	+1	reviewed	p.R222C	0.978	87	0%	93	45.2%	11	0%	probably_damaging(0.971)	tolerated(0.09)	deleterious(0.710)	HMMPfam_Exo_endo_phos,superfamily_Exo_endo_phos
RRAGB	10325	genome.wustl.edu	37	X	55784683	55784683	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016656.3	+1	validated	p.S344	0.948	297	0%	255	45.5%	4	75%	-	-	-	HMMPfam_Gtr1_RagA
ZC3H12B	340554	genome.wustl.edu	37	X	64722184	64722184	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010888.3	+1	reviewed	p.K525E	1.000	147	0%	125	48.8%	1	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
IGBP1	3476	genome.wustl.edu	37	X	69368674	69368674	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001551.2	+1	reviewed	p.N248D	0.686	244	0%	214	39.7%	62	1.6%	benign(0)	tolerated(1)	-	HMMPfam_TAP42
TEX11	56159	genome.wustl.edu	37	X	70127618	70127618	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031276.2	-1	reviewed	p.S8P	0.008	314	0.3%	313	40.6%	0	-	benign(0.278)	tolerated(0.33)	neutral(0.054)	NULL
ATRX	546	genome.wustl.edu	37	X	76778768	76778768	+	Missense_Mutation	SNP	T	T	C	rs122445112		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000489.3	-1	reviewed	p.R2271G	1.000	487	0%	524	44.8%	1	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
ZNF711	7552	genome.wustl.edu	37	X	84525987	84525987	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021998.4	+1	reviewed	p.Y480C	1.000	266	0%	275	39.6%	0	-	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	HMMPfam_zf-C2H2,HMMSmart_SM00355
BTK	695	genome.wustl.edu	37	X	100612524	100612524	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000061.2	-1	reviewed	p.A384T	1.000	465	0%	578	46.2%	1	0%	benign(0.176)	tolerated(0.28)	neutral(0.048)	NULL
PSMD10	5716	genome.wustl.edu	37	X	107331186	107331186	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002814.2	-1	reviewed	p.H119	1.000	430	0%	458	40.6%	8	87.5%	-	-	-	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
ENSG00000189372	0	genome.wustl.edu	37	X	107627124	107627124	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000453808	+1	known	p.E126	0.241	108	0%	84	45.2%	0	-	possibly_damaging(0.834)	tolerated(0.14)	deleterious(0.568)	HMMPfam_PLAT,HMMSmart_SM00308,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain)
RGAG1	57529	genome.wustl.edu	37	X	109693979	109693979	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020769.2	+1	validated	p.H45R	0.000	315	0%	222	41.4%	0	-	benign(0.186)	tolerated(0.12)	neutral(0.278)	NULL
CAPN6	827	genome.wustl.edu	37	X	110495673	110495673	+	Silent	SNP	C	C	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014289.3	-1	reviewed	p.V187	1.000	264	0%	241	36.9%	0	-	-	-	-	HMMPfam_Peptidase_C2,HMMSmart_CysPc,superfamily_SSF54001
DCX	1641	genome.wustl.edu	37	X	110555889	110555889	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000555.2	-1	reviewed	p.G417D	1.000	405	0%	403	45.7%	0	-	probably_damaging(0.998)	deleterious(0.05)	deleterious(0.820)	NULL
LOC286528	286528	genome.wustl.edu	37	X	113625270	113625270	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_210501.3	+1	model	p.A48	0.855	71	0%	51	43.1%	0	-	-	-	-	HMMPfam_Ssu72
DOCK11	139818	genome.wustl.edu	37	X	117782939	117782939	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144658.3	+1	validated	p.N1477S	0.756	341	0%	327	39.1%	1	0%	benign(0)	tolerated(0.41)	neutral(0.015)	NULL
UPF3B	65109	genome.wustl.edu	37	X	118972448	118972448	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080632.1	-1	reviewed	p.K297Q	1.000	671	0.1%	772	41.2%	8	0%	possibly_damaging(0.952)	tolerated(0.18)	neutral(0.452)	NULL
DCAF12L2	340578	genome.wustl.edu	37	X	125298970	125298970	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001013628.2	-1	reviewed	p.T313N	1.000	48	0%	24	54.2%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	superfamily_WD40_like
ARHGAP36	158763	genome.wustl.edu	37	X	130220306	130220306	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144967.3	+1	validated	p.P429S	1.000	232	0%	189	49.2%	0	-	probably_damaging(0.998)	tolerated(0.11)	deleterious(0.746)	NULL
PNMA3	29944	genome.wustl.edu	37	X	152226341	152226341	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013364.4	+1	reviewed	p.K310R	0.000	149	0%	159	39%	1	0%	benign(0)	tolerated(0.87)	neutral(0.001)	NULL
PNMA3	29944	genome.wustl.edu	37	X	152226517	152226517	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013364.4	+1	reviewed	p.P369T	0.028	60	0%	49	40.8%	0	-	probably_damaging(0.988)	tolerated(0.44)	neutral(0.450)	NULL
HAUS7	55559	genome.wustl.edu	37	X	152721992	152721992	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017518.6	-1	reviewed	p.D198	0.146	138	0%	87	48.3%	27	44.4%	-	-	-	NULL
ATP2B3	492	genome.wustl.edu	37	X	152821672	152821672	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001344.2	+1	reviewed	p.N742D	0.996	65	0%	67	53.7%	0	-	benign(0.009)	tolerated(1)	neutral(0.001)	HMMPfam_Hydrolase,superfamily_HAD-like,superfamily_Calcium ATPase transmembrane domain M
IRAK1	3654	genome.wustl.edu	37	X	153278087	153278087	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001569.3	-1	reviewed	p.P658L	0.042	101	0%	103	49.5%	13	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
FLNA	2316	genome.wustl.edu	37	X	153581812	153581812	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001110556.1	-1	reviewed	p.M1958I	1.000	97	0%	60	56.7%	16	0%	benign(0)	tolerated(0.47)	neutral(0.011)	HMMSmart_SM00557
FLNA	2316	genome.wustl.edu	37	X	153583212	153583212	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11G-01A-13D-A122-09	TCGA-B5-A11G-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001110556.1	-1	reviewed	p.N1733S	1.000	84	0%	67	16.4%	8	0%	possibly_damaging(0.895)	deleterious(0.02)	deleterious(0.736)	HMMSmart_SM00557,superfamily_E set domains,HMMPfam_Filamin
