Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
SDF4	51150	genome.wustl.edu	37	1	1153095	1153095	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016547.2	-1	validated	p.T334	0.000	80	0%	68	42.6%	7	0%	-	-	-	NULL
ICMT	23463	genome.wustl.edu	37	1	6285239	6285241	+	In_Frame_Del	DEL	TTC	TTC	-	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	TTC	TTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012405.3	-1	reviewed	p.E252in_frame_del	0.986:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_ICMT
ICMT	23463	genome.wustl.edu	37	1	6285299	6285299	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012405.3	-1	reviewed	p.C232	0.650	68	0%	77	48.1%	63	42.8%	-	-	-	HMMPfam_ICMT
PARK7	11315	genome.wustl.edu	37	1	8022901	8022901	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001123377.1	+1	reviewed	p.T19M	0.999	147	0%	159	18.9%	414	28.7%	probably_damaging(1)	tolerated(0.2)	deleterious(0.549)	superfamily_Class I glutamine amidotransferase-like
CROCC	9696	genome.wustl.edu	37	1	17279909	17279909	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014675.3	+1	validated	p.E1040G	1.000	15	0%	26	38.5%	4	0%	unknown(0)	tolerated(0.2)	-	NULL
RCC2	55920	genome.wustl.edu	37	1	17740148	17740148	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136204.1	-1	validated	p.H364	1.000	54	0%	54	24.1%	157	34.3%	-	-	-	superfamily_RCC1/BLIP-II
UBR4	23352	genome.wustl.edu	37	1	19514000	19514000	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020765.2	-1	validated	p.A477T	1.000	344	0%	310	27.4%	8	12.5%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
C1orf201	90529	genome.wustl.edu	37	1	24700231	24700232	+	Frame_Shift_Del	DEL	TT	TT	-	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	TT	TT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178122.3	-1	predicted	p.G132fs	0.966:0.150	-	-	-	-	-	-	-	-	-	NULL
UBXN11	91544	genome.wustl.edu	37	1	26627422	26627422	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_183008.2	-1	reviewed	p.R65Q	0.946	175	0%	174	45.4%	6	33.3%	possibly_damaging(0.729)	tolerated(0.33)	neutral(0.290)	NULL
EPB41	2035	genome.wustl.edu	37	1	29344900	29344900	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_203343.2	+1	reviewed	p.P322R	1.000	198	0%	179	16.2%	9	11.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_FERM_M,superfamily_FERM_3-hlx,HMMSmart_B41
SRSF4	6429	genome.wustl.edu	37	1	29475308	29475308	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005626.4	-1	reviewed	p.R367C	0.951	150	0%	159	38.4%	101	43.5%	unknown(0)	deleterious(0)	-	NULL
BAI2	576	genome.wustl.edu	37	1	32209880	32209880	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001703.2	-1	reviewed	p.R334H	1.000	49	0%	60	10%	1	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
MACF1	23499	genome.wustl.edu	37	1	39751388	39751388	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012090.3	+1	reviewed	p.L494P	1.000	109	0%	114	14.9%	7	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
RIMS3	9783	genome.wustl.edu	37	1	41101708	41101708	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014747.2	-1	validated	p.R80H	1.000	53	0%	34	50%	0	-	possibly_damaging(0.941)	deleterious(0)	deleterious(0.831)	NULL
GLIS1	148979	genome.wustl.edu	37	1	53974823	53974823	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_147193.2	-1	validated	p.H559N	0.994	34	0%	17	35.3%	0	-	benign(0.079)	tolerated(1)	neutral(0.005)	NULL
USP24	23358	genome.wustl.edu	37	1	55560928	55560929	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	AG	AG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015306.2	-1	validated	p.L1908fs	1.000:0.999	-	-	-	-	-	-	-	-	-	NULL
ATG4C	84938	genome.wustl.edu	37	1	63269478	63269478	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032852.2	+1	reviewed	p.D7	1.000	223	0%	205	33.7%	7	14.2%	-	-	-	NULL
JAK1	3716	genome.wustl.edu	37	1	65307173	65307173	+	Nonsense_Mutation	SNP	G	G	A	rs181919006	by1000genomes	TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002227.2	-1	reviewed	p.R839*	1.000	207	0%	173	14.5%	22	4.5%	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
ZNF326	284695	genome.wustl.edu	37	1	90486387	90486387	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182976.2	+1	validated	p.T404R	1.000	439	0%	386	41.5%	20	30%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	HMMPfam_AKAP95
MAN1A2	10905	genome.wustl.edu	37	1	118042064	118042064	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006699.3	+1	validated	p.R522Q	1.000	90	0%	103	16.5%	29	34.4%	possibly_damaging(0.459)	tolerated(0.1)	neutral(0.437)	HMMPfam_Glyco_hydro_47,superfamily_Glyco_hydro_47
HIST2H3PS2	440686	genome.wustl.edu	37	1	149400315	149400315	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000369176	-1	known	p.A76	1.000	55	0%	78	12.8%	0	-	-	-	-	HMMSmart_H3,HMMPfam_Histone,superfamily_Histone-fold
CERS2	29956	genome.wustl.edu	37	1	150939873	150939873	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022075.3	-1	reviewed	p.R203*	1.000	171	0%	186	42.5%	53	3.7%	-	-	-	HMMPfam_TRAM_LAG1_CLN8,HMMSmart_SM00724
CGN	57530	genome.wustl.edu	37	1	151491704	151491704	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020770.2	+1	validated	p.S237A	0.002	15	0%	22	31.8%	30	30%	benign(0.002)	tolerated(0.4)	neutral(0.016)	NULL
FLAD1	80308	genome.wustl.edu	37	1	154962066	154962066	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025207.4	+1	reviewed	p.A383V	1.000	66	0%	52	17.3%	46	10.8%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	superfamily_Adenine nucleotide alpha hydrolases-like
TTC24	164118	genome.wustl.edu	37	1	156553623	156553623	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105669.2	+1	provisional	p.A116V	1.000	20	0%	26	34.6%	0	-	probably_damaging(0.982)	tolerated(0.08)	deleterious(0.726)	superfamily_TPR-like
COPA	1314	genome.wustl.edu	37	1	160278942	160278942	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098398.1	-1	reviewed	p.T390S	1.000	372	0%	347	16.4%	92	13%	possibly_damaging(0.655)	tolerated(0.58)	neutral(0.236)	HMMPfam_Coatomer_WDAD
PVRL4	81607	genome.wustl.edu	37	1	161043570	161043570	+	Silent	SNP	G	G	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030916.2	-1	validated	p.T391	0.774	100	0%	75	36%	28	50%	-	-	-	NULL
MYOC	4653	genome.wustl.edu	37	1	171605331	171605331	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000261.1	-1	reviewed	p.W417R	1.000	333	0%	290	41%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_OLF,HMMSmart_SM00284
HMCN1	83872	genome.wustl.edu	37	1	186113408	186113408	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031935.2	+1	reviewed	p.A4676	0.000	141	0%	138	17.4%	0	-	-	-	-	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
RGS13	6003	genome.wustl.edu	37	1	192627431	192627431	+	Silent	SNP	G	G	C	rs41300867	byCluster;byFrequency;by1000genomes	TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002927.3	+1	reviewed	p.R76	0.000	264	0%	175	40.6%	0	-	-	-	-	HMMPfam_RGS,HMMSmart_RGS,superfamily_Regulat_G_prot_signal_superfam
ASPM	259266	genome.wustl.edu	37	1	197060167	197060167	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018136.4	-1	reviewed	p.W3150L	1.000	214	0%	196	42.3%	10	60%	possibly_damaging(0.943)	tolerated(0.3)	neutral(0.416)	HMMSmart_SM00015,superfamily_P-loop containing nucleoside triphosphate hydrolases
ASPM	259266	genome.wustl.edu	37	1	197112407	197112407	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018136.4	-1	reviewed	p.S325	0.000	137	0%	105	32.4%	0	-	-	-	-	NULL
ZC3H11A	9877	genome.wustl.edu	37	1	203821319	203821319	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014827.4	+1	validated	p.V742A	0.129	152	0%	132	15.2%	33	15.1%	benign(0.013)	tolerated(0.95)	neutral(0.001)	NULL
USH2A	7399	genome.wustl.edu	37	1	215963616	215963616	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_206933.2	-1	reviewed	p.C3323R	1.000	279	0%	250	17.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00060,superfamily_Fibronectin type III
USH2A	7399	genome.wustl.edu	37	1	216465529	216465529	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_206933.2	-1	reviewed	p.H610Y	0.989	190	0.5%	183	42.6%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1,superfamily_Concanavalin A-like lectins/glucanases,superfamily_EGF/Laminin
TGFB2	7042	genome.wustl.edu	37	1	218614676	218614676	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135599.1	+1	validated	p.M434T	1.000	311	0%	270	39.3%	5	60%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TGF_beta,HMMSmart_SM00204,superfamily_Cystine-knot cytokines
ZNF678	339500	genome.wustl.edu	37	1	227842094	227842094	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178549.3	+1	validated	p.C48Y	0.001	224	0%	149	11.4%	0	-	benign(0)	tolerated(1)	-	NULL
OBSCN	84033	genome.wustl.edu	37	1	228475547	228475547	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098623.1	+1	reviewed	p.R3233C	1.000	72	0%	65	41.5%	1	100%	probably_damaging(1)	tolerated(0.21)	deleterious(0.544)	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
NUP133	55746	genome.wustl.edu	37	1	229625821	229625821	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018230.2	-1	reviewed	p.W359R	0.995	117	0%	110	14.5%	18	11.1%	probably_damaging(0.998)	tolerated(0.33)	deleterious(0.498)	HMMPfam_Nup133_N
KIAA1383	54627	genome.wustl.edu	37	1	232942321	232942321	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019090.2	+1	validated	p.G518R	0.872	230	0%	232	36.6%	0	-	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	NULL
AKT3	10000	genome.wustl.edu	37	1	243708875	243708875	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005465.3	-1	reviewed	p.A396	0.975	364	0%	291	13.4%	0	-	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
ATP6V1C2	245973	genome.wustl.edu	37	2	10912735	10912738	+	Frame_Shift_Del	DEL	AAGT	AAGT	-	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	AAGT	AAGT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039362.1	+1	reviewed	p.K213fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_V-ATPase_C
OTOF	9381	genome.wustl.edu	37	2	26699804	26699804	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_194248.2	-1	reviewed	p.E877D	1.000	41	0%	42	52.4%	0	-	possibly_damaging(0.755)	tolerated(0.1)	deleterious(0.565)	HMMPfam_FerB
EMILIN1	11117	genome.wustl.edu	37	2	27306219	27306219	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007046.3	+1	reviewed	p.R594C	1.000	20	0%	25	24%	2	0%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
KCNG3	170850	genome.wustl.edu	37	2	42671674	42671674	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133329.4	-1	reviewed	p.I237	0.526	88	0%	99	10.1%	3	33.3%	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
CCDC104	112942	genome.wustl.edu	37	2	55756098	55756099	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080667.5	+1	validated	p.A124fs	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
CCDC104	112942	genome.wustl.edu	37	2	55771199	55771199	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080667.5	+1	validated	p.G256R	1.000	232	0%	220	40.9%	108	25.9%	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	NULL
PAPOLG	64895	genome.wustl.edu	37	2	61021251	61021251	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022894.2	+1	reviewed	p.T638	0.983	156	0%	168	13.7%	6	16.6%	-	-	-	NULL
DYSF	8291	genome.wustl.edu	37	2	71742771	71742771	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130987.1	+1	reviewed	p.E260K	0.999	77	1.3%	58	32.8%	1	0%	benign(0.011)	deleterious(0.02)	neutral(0.384)	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB
POLR1A	25885	genome.wustl.edu	37	2	86297362	86297362	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015425.3	-1	validated	p.L549	0.844	113	0%	160	27.5%	17	23.5%	-	-	-	HMMPfam_RNA_pol_Rpb1_2,HMMSmart_SM00663,superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase
ITPRIPL1	150771	genome.wustl.edu	37	2	96992669	96992669	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000420728	+1	known	p.A132V	0.989	222	0%	218	14.7%	1	0%	-	-	-	NULL
VWA3B	200403	genome.wustl.edu	37	2	98928448	98928448	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144992.4	+1	provisional	p.G1230S	0.000	19	0%	30	40%	3	0%	benign(0.002)	deleterious(0)	neutral(0.445)	NULL
TSGA10	80705	genome.wustl.edu	37	2	99681583	99681583	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025244.2	-1	validated	p.S408F	1.000	272	0%	256	22.3%	5	0%	benign(0.141)	deleterious(0.02)	neutral(0.395)	NULL
EIF5B	9669	genome.wustl.edu	37	2	100010862	100010862	+	Splice_Site	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015904.3	+1	reviewed	e19+1	1.000	215	0.9%	218	21.1%	2	50%	-	-	-	-
SLC20A1	6574	genome.wustl.edu	37	2	113416607	113416608	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	AG	AG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005415.3	+1	provisional	p.R332fs	0.023:0.531	-	-	-	-	-	-	-	-	-	HMMPfam_PHO4
LOC100130100	100130100	genome.wustl.edu	37	2	114164596	114164596	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001716615.1	+1	model	p.M167T	0.024	31	0%	36	19.4%	0	-	-	-	-	NULL
IWS1	55677	genome.wustl.edu	37	2	128261122	128261122	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017969.2	-1	validated	p.A417V	1.000	312	0%	300	46%	44	52.2%	benign(0.005)	tolerated(0.27)	neutral(0.034)	NULL
GALNT13	114805	genome.wustl.edu	37	2	154801034	154801034	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052917.2	+1	validated	p.K8N	1.000	204	0%	157	35.7%	0	-	probably_damaging(0.971)	deleterious(0.01)	deleterious(0.819)	NULL
NOSTRIN	115677	genome.wustl.edu	37	2	169688035	169688035	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039724.3	+1	validated	p.Q132	1.000	233	0%	246	12.6%	3	0%	-	-	-	NULL
C2orf77	129881	genome.wustl.edu	37	2	170518876	170518876	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001085447.1	-1	validated	p.R245*	1.000	614	0%	460	36.3%	1	0%	-	-	-	NULL
SLC25A12	8604	genome.wustl.edu	37	2	172650266	172650266	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003705.3	-1	reviewed	p.S439	0.996	74	0%	87	43.7%	8	50%	-	-	-	superfamily_Mitoch_carrier,HMMPfam_Mito_carr
TTN	7273	genome.wustl.edu	37	2	179404351	179404351	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.R30244M	1.000	190	0%	172	26.7%	2	0%	probably_damaging(0.993)	-	-	HMMPfam_fn3,HMMSmart_SM00060
NEUROD1	4760	genome.wustl.edu	37	2	182543447	182543447	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002500.2	-1	reviewed	p.N47	0.008	446	0%	329	44.1%	0	-	-	-	-	NULL
PARD3B	117583	genome.wustl.edu	37	2	205978222	205978222	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152526.4	+1	validated	p.T201A	1.000	466	0%	390	44.1%	5	60%	benign(0.207)	tolerated(0.07)	neutral(0.339)	superfamily_PDZ
ABCA12	26154	genome.wustl.edu	37	2	215798827	215798827	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173076.2	-1	reviewed	p.L2552S	1.000	306	0%	215	47%	0	-	benign(0.002)	tolerated(1)	-	NULL
TNS1	7145	genome.wustl.edu	37	2	218712265	218712265	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022648.4	-1	reviewed	p.N867T	1.000	153	0%	139	18.7%	4	25%	possibly_damaging(0.833)	deleterious(0)	deleterious(0.762)	NULL
NCL	4691	genome.wustl.edu	37	2	232324994	232324994	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005381.2	-1	reviewed	p.P303	0.242	189	0%	192	27.6%	463	36.9%	-	-	-	superfamily_SSF54928
SH3BP4	23677	genome.wustl.edu	37	2	235949779	235949779	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014521.2	+1	reviewed	p.S122	0.996	157	0%	191	28.3%	60	23.3%	-	-	-	NULL
ILKAP	80895	genome.wustl.edu	37	2	239096822	239096822	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030768.2	-1	reviewed	p.H125	0.939	133	0%	139	18%	28	17.8%	-	-	-	HMMSmart_PP2C_SIG,HMMSmart_PP2Cc,superfamily_PP2C-related,HMMPfam_PP2C
PASK	23178	genome.wustl.edu	37	2	242076594	242076594	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015148.2	-1	validated	p.S321N	0.000	63	0%	49	32.7%	10	40%	possibly_damaging(0.527)	deleterious(0.04)	deleterious(0.527)	NULL
KCNH8	131096	genome.wustl.edu	37	3	19436652	19436652	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144633.2	+1	reviewed	p.L342	1.000	163	0%	139	33.8%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_SSF81324
TOP2B	7155	genome.wustl.edu	37	3	25654035	25654035	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001068.2	-1	reviewed	p.A1248T	1.000	276	0%	208	34.6%	147	51%	probably_damaging(1)	tolerated(0.15)	deleterious(0.741)	NULL
TRAK1	22906	genome.wustl.edu	37	3	42229564	42229564	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042646.1	+1	validated	p.M170V	1.000	125	0%	114	17.5%	24	16.6%	benign(0.253)	tolerated(0.43)	neutral(0.040)	HMMPfam_HAP1_N
AMT	275	genome.wustl.edu	37	3	49456432	49456432	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000427987	-1	known	p.C281R	0.999	41	0%	32	37.5%	5	0%	-	-	-	HMMPfam_GCV_T,superfamily_Aminomethyltransferase folate-binding domain
ZMYND10	51364	genome.wustl.edu	37	3	50379081	50379081	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015896.2	-1	validated	p.R391W	0.986	98	0%	98	14.3%	33	24.2%	probably_damaging(0.985)	deleterious(0.02)	deleterious(0.815)	NULL
NPRL2	10641	genome.wustl.edu	37	3	50385996	50385997	+	Splice_Site	INS	-	-	GA	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006545.4	-1	validated	e7-2	1.000:0.829	-	-	-	-	-	-	-	-	-	-
RFT1	91869	genome.wustl.edu	37	3	53159945	53159945	+	Silent	SNP	G	G	T	rs148510042		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052859.3	-1	reviewed	p.I43	0.011	189	0.5%	239	44.8%	12	33.3%	-	-	-	HMMPfam_Rft-1
ENSG00000222888	0	genome.wustl.edu	37	3	53916232	53916232	+	RNA	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000410956	-1	novel	NULL	0.001	20	0%	23	34.8%	0	-	-	-	-	-
HTR1F	3355	genome.wustl.edu	37	3	88040986	88040986	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000866.3	+1	validated	p.R363*	1.000	115	0%	83	33.7%	0	-	-	-	-	superfamily_SSF81321
B4GALT4	8702	genome.wustl.edu	37	3	118937578	118937578	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003778.3	-1	reviewed	p.S239N	1.000	302	0%	291	13.4%	50	8%	benign(0.37)	tolerated(0.06)	neutral(0.440)	HMMPfam_Galactosyl_T_2,superfamily_Nucleotide-diphospho-sugar transferases
HCLS1	3059	genome.wustl.edu	37	3	121376193	121376193	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005335.4	-1	validated	p.I31V	1.000	224	0%	237	15.2%	18	5.5%	benign(0.012)	tolerated(1)	neutral(0.001)	NULL
ILDR1	286676	genome.wustl.edu	37	3	121725878	121725878	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175924.2	-1	provisional	p.K63	1.000	147	0%	145	20%	16	6.2%	-	-	-	HMMSmart_IG,superfamily_SSF48726
ITGB5	3693	genome.wustl.edu	37	3	124485194	124485194	+	Splice_Site	SNP	T	T	C	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002213.3	-1	provisional	e13-2	1.000	75	0%	58	43.1%	4	100%	-	-	-	-
PLXNA1	5361	genome.wustl.edu	37	3	126733088	126733088	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032242.3	+1	validated	p.R802H	0.914	12	0%	14	57.1%	7	57.1%	benign(0.071)	deleterious(0.01)	neutral(0.411)	HMMPfam_PSI,HMMSmart_SM00423
C3orf37	56941	genome.wustl.edu	37	3	129020968	129020968	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001006109.1	+1	validated	p.D271N	0.000	204	0%	187	27.3%	56	30.3%	benign(0.007)	tolerated(0.16)	neutral(0.059)	NULL
AADAC	13	genome.wustl.edu	37	3	151531993	151531993	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001086.2	+1	reviewed	p.I15V	0.000	213	0%	214	27.1%	0	-	benign(0)	tolerated(0.66)	neutral(0.003)	NULL
MCCC1	56922	genome.wustl.edu	37	3	182755066	182755066	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020166.3	-1	reviewed	p.A512T	1.000	169	0%	147	10.2%	43	16.2%	benign(0.333)	deleterious(0.04)	neutral(0.453)	NULL
NCBP2	22916	genome.wustl.edu	37	3	196669272	196669272	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000428425	-1	known	p.G35R	0.037	31	0%	21	38.1%	3	66.6%	unknown(0)	-	-	NULL
ZNF721	170960	genome.wustl.edu	37	4	435781	435781	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133474.2	-1	validated	p.T825	0.001	242	0%	225	25.8%	12	33.3%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
GABRG1	2565	genome.wustl.edu	37	4	46125861	46125861	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173536.3	-1	reviewed	p.V24I	0.988	319	0%	231	26.8%	0	-	benign(0)	tolerated(1)	-	NULL
FRYL	285527	genome.wustl.edu	37	4	48552710	48552710	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015030.1	-1	validated	p.L1511P	1.000	261	0%	276	34.1%	7	57.1%	probably_damaging(0.981)	tolerated(0.21)	deleterious(0.469)	NULL
PDGFRA	5156	genome.wustl.edu	37	4	55146527	55146527	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006206.4	+1	reviewed	p.M734T	1.000	344	0.3%	305	12.5%	8	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
ANKRD17	26057	genome.wustl.edu	37	4	74005393	74005393	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032217.3	-1	reviewed	p.L980	1.000	132	0%	151	22.5%	16	18.7%	-	-	-	superfamily_Ankyrin repeat
RASSF6	166824	genome.wustl.edu	37	4	74459182	74459182	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_201431.1	-1	validated	p.V123	0.002	251	0%	209	38.8%	6	66.6%	-	-	-	NULL
DDIT4L	115265	genome.wustl.edu	37	4	101111077	101111077	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145244.2	-1	provisional	p.G22C	0.941	93	0%	103	48.5%	5	80%	benign(0.087)	deleterious(0.01)	neutral(0.412)	NULL
ELOVL6	79071	genome.wustl.edu	37	4	110972773	110972773	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130721.1	-1	validated	p.V173	0.996	50	0%	51	23.5%	7	0%	-	-	-	HMMPfam_ELO
PRSS12	8492	genome.wustl.edu	37	4	119203147	119203147	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003619.2	-1	reviewed	p.V858L	1.000	220	0%	196	36.2%	8	62.5%	possibly_damaging(0.754)	tolerated(0.07)	deleterious(0.597)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
KIAA1109	84162	genome.wustl.edu	37	4	123226096	123226096	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015312.3	+1	reviewed	p.Q3210H	0.992	155	0%	134	23.1%	3	33.3%	probably_damaging(0.983)	tolerated(0.13)	deleterious(0.681)	NULL
GYPE	2996	genome.wustl.edu	37	4	144826638	144826638	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002102.3	-1	reviewed	p.V8A	0.077	522	0.2%	527	43.3%	0	-	benign(0.016)	deleterious(0)	neutral(0.445)	NULL
SORBS2	8470	genome.wustl.edu	37	4	186544809	186544809	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021069.4	-1	reviewed	p.Q588*	0.748	33	0%	41	34.1%	0	-	-	-	-	NULL
SORBS2	8470	genome.wustl.edu	37	4	186544810	186544810	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021069.4	-1	reviewed	p.E587	0.772	34	0%	42	33.3%	0	-	-	-	-	NULL
SEMA5A	9037	genome.wustl.edu	37	5	9227038	9227038	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000514923	-1	known	p.R73*	0.005	83	0%	67	20.9%	0	-	-	-	-	HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain
DNAH5	1767	genome.wustl.edu	37	5	13883156	13883156	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001369.2	-1	reviewed	p.R1011W	1.000	216	0.5%	205	12.2%	2	0%	possibly_damaging(0.95)	deleterious(0.04)	deleterious(0.742)	NULL
TRIO	7204	genome.wustl.edu	37	5	14504623	14504623	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007118.2	+1	validated	p.Q2845*	1.000	102	0%	106	41.5%	24	16.6%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
NUP155	9631	genome.wustl.edu	37	5	37307495	37307495	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153485.1	-1	reviewed	p.A936V	1.000	213	0%	201	22.4%	6	33.3%	benign(0.08)	tolerated(0.27)	neutral(0.039)	HMMPfam_Nucleoporin
C7	730	genome.wustl.edu	37	5	40962264	40962264	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000587.2	+1	reviewed	p.G580E	1.000	410	0%	313	34.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module
HCN1	348980	genome.wustl.edu	37	5	45262759	45262759	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021072.2	-1	validated	p.T646N	1.000	340	0%	361	40.4%	0	-	benign(0.003)	tolerated(0.5)	neutral(0.010)	NULL
ISL1	3670	genome.wustl.edu	37	5	50685748	50685748	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000503187	+1	known	p.A250T	1.000	60	0%	83	41%	0	-	probably_damaging(0.965)	deleterious(0)	deleterious(0.851)	NULL
CWC27	10283	genome.wustl.edu	37	5	64079742	64079742	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005869.2	+1	validated	p.S111I	1.000	250	0%	225	38.2%	28	60.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pro_isomerase,superfamily_Cyclophilin-like
MAST4	375449	genome.wustl.edu	37	5	66460868	66460868	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015183.2	+1	validated	p.R1765H	0.000	41	0%	48	31.2%	7	57.1%	benign(0.003)	deleterious(0)	neutral(0.445)	NULL
PIK3R1	5295	genome.wustl.edu	37	5	67591246	67591273	+	Frame_Shift_Del	DEL	TCAAAACTGTTTTTCAGGTGGTTGACTC	TCAAAACTGTTTTTCAGGTGGTTGACTC	-	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	TCAAAACTGTTTTTCAGGTGGTTGACTC	TCAAAACTGTTTTTCAGGTGGTTGACTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181523.1	+1	reviewed	p.M583fs	1.000:1.000:1.000:1.000:1.000:1.000:0.986:1.000:1.000:1.000:1.000:0.749:1.000	-	-	-	-	-	-	-	-	-	NULL
CCDC112	153733	genome.wustl.edu	37	5	114607097	114607099	+	In_Frame_Del	DEL	TCT	TCT	-	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	TCT	TCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040440.2	-1	validated	p.E382in_frame_del	1.000:1.000:0.999	-	-	-	-	-	-	-	-	-	NULL
C5orf48	389320	genome.wustl.edu	37	5	125968274	125968274	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207408.1	+1	predicted	p.K41	0.995	295	0%	294	35.7%	0	-	-	-	-	NULL
FSTL4	23105	genome.wustl.edu	37	5	132553018	132553018	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015082.1	-1	validated	p.V504A	0.955	242	0%	189	39.2%	0	-	benign(0)	tolerated(0.71)	neutral(0.002)	superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase
HARS	3035	genome.wustl.edu	37	5	140070442	140070442	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002109.3	-1	reviewed	p.K60E	1.000	126	0%	116	14.7%	59	8.4%	benign(0.013)	tolerated(0.17)	neutral(0.059)	HMMPfam_WHEP-TRS,superfamily_SSF55681
PCDHA3	56145	genome.wustl.edu	37	5	140182972	140182972	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018906.2	+1	reviewed	p.G730	0.005	97	0%	95	46.3%	1	0%	-	-	-	NULL
PCDHA10	56139	genome.wustl.edu	37	5	140237891	140237891	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018901.2	+1	reviewed	p.R753Q	0.503	204	0%	170	40%	0	-	benign(0.017)	tolerated(0.59)	neutral(0.005)	NULL
PCDHB5	26167	genome.wustl.edu	37	5	140517184	140517184	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015669.2	+1	reviewed	p.R723H	0.000	62	0%	50	54%	0	-	possibly_damaging(0.768)	tolerated(0.59)	neutral(0.289)	NULL
SLC26A2	1836	genome.wustl.edu	37	5	149357387	149357387	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000112.3	+1	reviewed	p.R58C	0.219	152	0%	118	10.2%	16	6.2%	possibly_damaging(0.902)	deleterious(0.01)	deleterious(0.762)	NULL
ADAM19	8728	genome.wustl.edu	37	5	156926671	156926671	+	Splice_Site	SNP	C	C	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033274.2	-1	reviewed	e13-1	1.000	120	0%	101	45.5%	0	-	-	-	-	-
C5orf25	375484	genome.wustl.edu	37	5	175722149	175722149	+	Silent	SNP	C	C	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198567.4	+1	validated	p.P82	1.000	251	0%	197	17.8%	6	16.6%	-	-	-	NULL
SLC34A1	6569	genome.wustl.edu	37	5	176813527	176813527	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003052.4	+1	reviewed	p.S164	1.000	66	0%	67	43.3%	0	-	-	-	-	HMMPfam_Na_Pi_cotrans
DSP	1832	genome.wustl.edu	37	6	7585204	7585204	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004415.2	+1	reviewed	p.S2570T	0.007	160	0%	162	39.5%	238	53.3%	benign(0.002)	tolerated(0.51)	neutral(0.009)	superfamily_Plakin repeat
GCM2	9247	genome.wustl.edu	37	6	10877540	10877540	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004752.3	-1	reviewed	p.R59H	1.000	120	0%	135	23.7%	0	-	probably_damaging(0.971)	deleterious(0)	deleterious(0.857)	HMMPfam_GCM,superfamily_GCM_motif
HIVEP1	3096	genome.wustl.edu	37	6	12121881	12121881	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002114.2	+1	validated	p.T618I	0.000	73	0%	70	14.3%	2	0%	benign(0.071)	tolerated(0.08)	neutral(0.305)	NULL
KDM1B	221656	genome.wustl.edu	37	6	18215250	18215250	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153042.3	+1	validated	p.V476M	1.000	91	0%	91	29.7%	16	56.2%	probably_damaging(0.986)	deleterious(0.01)	deleterious(0.840)	HMMPfam_Amino_oxidase,superfamily_SSF51905,superfamily_SSF54373
MBOAT1	154141	genome.wustl.edu	37	6	20152937	20152937	+	Missense_Mutation	SNP	G	G	T	rs150206972	by1000genomes	TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080480.1	-1	provisional	p.R55S	0.754	196	0%	257	21.8%	33	12.1%	benign(0)	tolerated(0.84)	neutral(0.001)	NULL
SLC17A3	10786	genome.wustl.edu	37	6	25851095	25851095	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098486.1	-1	validated	p.G241	0.997	289	0%	310	27.4%	0	-	-	-	-	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
FANCE	2178	genome.wustl.edu	37	6	35427153	35427153	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021922.2	+1	reviewed	p.L387M	0.477	304	0%	369	27.4%	20	40%	probably_damaging(1)	tolerated(0.17)	deleterious(0.559)	NULL
MAPK14	1432	genome.wustl.edu	37	6	36070382	36070382	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001315.2	+1	reviewed	p.P266L	1.000	438	0%	453	41.3%	33	39.3%	probably_damaging(0.996)	deleterious(0.02)	deleterious(0.845)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
PI16	221476	genome.wustl.edu	37	6	36930927	36930927	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153370.2	+1	validated	p.T270M	0.836	61	0%	67	37.3%	0	-	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	NULL
FGD2	221472	genome.wustl.edu	37	6	36993651	36993651	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173558.3	+1	validated	p.Y514	0.995	59	0%	50	36%	2	0%	-	-	-	HMMPfam_FYVE,HMMSmart_SM00064,superfamily_FYVE/PHD zinc finger
KIF6	221458	genome.wustl.edu	37	6	39552732	39552732	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145027.4	-1	validated	p.Q340R	1.000	214	0%	182	13.2%	0	-	possibly_damaging(0.952)	tolerated(0.12)	deleterious(0.656)	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
ENPP5	59084	genome.wustl.edu	37	6	46129247	46129247	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021572.4	-1	validated	p.P417L	0.004	283	0%	286	15.7%	27	33.3%	benign(0)	tolerated(1)	-	NULL
FAM83B	222584	genome.wustl.edu	37	6	54735112	54735112	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010872.1	+1	validated	p.H23R	1.000	106	0%	127	17.3%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_DUF1669
FAM83B	222584	genome.wustl.edu	37	6	54805108	54805108	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010872.1	+1	validated	p.R447W	0.691	138	0%	129	48.1%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
SYNCRIP	10492	genome.wustl.edu	37	6	86324967	86324967	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006372.4	-1	validated	p.Y460C	1.000	50	0%	40	35%	91	54.9%	unknown(0)	tolerated(0.11)	-	superfamily_RNA-binding domain RBD
ZNF292	23036	genome.wustl.edu	37	6	87971031	87971031	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015021.1	+1	validated	p.R2562C	0.271	45	0%	62	12.9%	12	25%	possibly_damaging(0.552)	deleterious(0)	deleterious(0.633)	NULL
DSE	29940	genome.wustl.edu	37	6	116720818	116720818	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080976.1	+1	reviewed	p.A135	0.998	60	0%	92	16.3%	5	0%	-	-	-	NULL
HEY2	23493	genome.wustl.edu	37	6	126080812	126080812	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012259.2	+1	reviewed	p.A293E	0.954	51	0%	46	26.1%	16	6.2%	possibly_damaging(0.507)	tolerated(0.19)	neutral(0.219)	NULL
LAMA2	3908	genome.wustl.edu	37	6	129687452	129687452	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000426.3	+1	reviewed	p.L1602	1.000	143	0%	126	24.6%	0	-	-	-	-	superfamily_ConA_like_lec_gl,HMMPfam_Laminin_I
TNFAIP3	7128	genome.wustl.edu	37	6	138199674	138199675	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	GA	GA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006290.2	+1	reviewed	p.E366fs	0.999:1.000	-	-	-	-	-	-	-	-	-	NULL
UTRN	7402	genome.wustl.edu	37	6	144761584	144761584	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007124.2	+1	reviewed	p.A497T	1.000	311	0%	314	39.5%	9	66.6%	probably_damaging(0.973)	deleterious(0)	deleterious(0.859)	HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin
IYD	389434	genome.wustl.edu	37	6	150716712	150716712	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000392255	+1	known	p.A270V	0.000	61	0%	75	10.7%	0	-	possibly_damaging(0.949)	deleterious(0.01)	deleterious(0.798)	NULL
FNDC1	84624	genome.wustl.edu	37	6	159646688	159646688	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032532.2	+1	validated	p.R336C	0.998	258	0.4%	246	19.9%	7	0%	unknown(0)	deleterious(0)	-	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
ICA1	3382	genome.wustl.edu	37	7	8196567	8196585	+	Frame_Shift_Del	DEL	AAAAAAAAAAAAAAAAAAG	AAAAAAAAAAAAAAAAAAG	-	rs77253977		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	AAAAAAAAAAAAAAAAAAG	AAAAAAAAAAAAAAAAAAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000407906	-1	known	p.S322fs	0.008:0.013:0.018:0.022:0.026:0.029:0.033:0.021:0.016:0.011:0.005:0.002:0.000:0.000:0.000:0.001:0.001:0.001:0.001	-	-	-	-	-	-	-	-	-	NULL
LOC340268	340268	genome.wustl.edu	37	7	9766538	9766538	+	RNA	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XR_041608.1	+1	model	NULL	0.987	146	0%	152	20.4%	1	0%	-	-	-	-
MACC1	346389	genome.wustl.edu	37	7	20201409	20201409	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182762.3	-1	validated	p.M26T	1.000	497	0%	379	36.1%	3	0%	benign(0.032)	tolerated(0.82)	neutral(0.002)	NULL
BMPER	168667	genome.wustl.edu	37	7	34182938	34182938	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133468.3	+1	validated	p.I614	0.014	275	0%	212	10.8%	0	-	-	-	-	HMMPfam_C8
ZPBP	11055	genome.wustl.edu	37	7	50057862	50057862	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007009.2	-1	validated	p.C253R	0.922	412	0%	346	14.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sp38
MAGI2	9863	genome.wustl.edu	37	7	79082496	79082496	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012301.3	-1	reviewed	p.V47	1.000	56	0%	39	28.2%	0	-	-	-	-	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
ASNS	440	genome.wustl.edu	37	7	97481702	97481702	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001673.4	-1	reviewed	p.R519C	1.000	279	0%	302	14.2%	80	3.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF52402
TRRAP	8295	genome.wustl.edu	37	7	98562316	98562316	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000456197	+1	known	p.P2013L	0.001	105	0%	149	44.3%	14	42.8%	-	-	-	superfamily_ARM repeat
AP4M1	9179	genome.wustl.edu	37	7	99702967	99702967	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004722.3	+1	reviewed	p.E278K	1.000	118	0%	131	45%	40	40%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Adap_comp_sub,superfamily_AP50,PatternScan_CLAT_ADAPTOR_M_2
CUX1	1523	genome.wustl.edu	37	7	101882611	101882611	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181552.2	+1	reviewed	p.R1212W	1.000	19	0%	26	26.9%	3	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
HBP1	26959	genome.wustl.edu	37	7	106829779	106829779	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012257.3	+1	validated	p.S270C	1.000	501	0%	375	41.1%	43	51.1%	benign(0.001)	tolerated(0.1)	neutral(0.286)	HMMSmart_SM00536,HMMPfam_AXH,superfamily_AXH domain
TMEM229A	730130	genome.wustl.edu	37	7	123672394	123672394	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136002.1	-1	validated	p.R222*	0.418	21	4.8%	14	28.6%	0	-	-	-	-	NULL
C7orf49	78996	genome.wustl.edu	37	7	134853705	134853705	+	RNA	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_024185.1	-1	validated	NULL	0.000	104	0%	83	13.3%	48	6.2%	-	-	-	-
OR9A4	130075	genome.wustl.edu	37	7	141619441	141619441	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001656.1	+1	provisional	p.L256	0.930	167	0%	202	13.9%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
MGAM	8972	genome.wustl.edu	37	7	141764222	141764222	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004668.2	+1	reviewed	p.L1462V	1.000	85	0%	101	18.8%	0	-	benign(0.085)	tolerated(0.28)	neutral(0.037)	HMMPfam_Glyco_hydro_31
MGAM	8972	genome.wustl.edu	37	7	141778752	141778752	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000475668	+1	known	p.V1932M	0.084	150	0%	142	23.9%	0	-	unknown(0)	deleterious(0.01)	-	NULL
SSPO	23145	genome.wustl.edu	37	7	149483249	149483249	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000378016	+1	known	p.R1106H	0.000	45	0%	26	15.4%	0	-	-	-	-	HMMPfam_VWD,HMMSmart_SM00216
ERICH1	157697	genome.wustl.edu	37	8	623596	623596	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207332.1	-1	provisional	p.D252	0.002	211	0%	182	36.3%	9	22.2%	-	-	-	NULL
MYOM2	9172	genome.wustl.edu	37	8	2063842	2063842	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003970.2	+1	validated	p.Q1091*	1.000	391	0%	461	14.3%	0	-	-	-	-	NULL
DLC1	10395	genome.wustl.edu	37	8	12957801	12957801	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182643.2	-1	reviewed	p.S682N	0.995	108	0.9%	97	12.4%	8	12.5%	benign(0.311)	tolerated(0.3)	neutral(0.126)	NULL
SLC18A1	6570	genome.wustl.edu	37	8	20005546	20005546	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135691.2	-1	validated	p.G394	0.959	176	0%	176	44.3%	0	-	-	-	-	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
LOXL2	4017	genome.wustl.edu	37	8	23156383	23156383	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002318.2	-1	reviewed	p.D737	0.984	116	0%	129	28.7%	23	4.3%	-	-	-	HMMPfam_Lysyl_oxidase
CDCA2	157313	genome.wustl.edu	37	8	25319665	25319665	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152562.2	+1	validated	p.R110W	1.000	315	0%	296	23.6%	4	75%	possibly_damaging(0.888)	deleterious(0)	deleterious(0.792)	NULL
NRG1	3084	genome.wustl.edu	37	8	32616830	32616830	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013956.3	+1	reviewed	p.V318I	0.996	338	0.3%	328	39.6%	0	-	probably_damaging(0.964)	tolerated(0.95)	neutral(0.406)	HMMPfam_Neuregulin
KCNU1	157855	genome.wustl.edu	37	8	36788640	36788640	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031836.2	+1	validated	p.E970K	0.000	189	0%	169	22.5%	0	-	benign(0.026)	deleterious(0.01)	neutral(0.407)	NULL
HTRA4	203100	genome.wustl.edu	37	8	38840074	38840074	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153692.3	+1	reviewed	p.P391L	0.996	386	0%	429	21.2%	0	-	benign(0.055)	tolerated(0.07)	neutral(0.323)	HMMSmart_PDZ,superfamily_PDZ
HGSNAT	138050	genome.wustl.edu	37	8	43054619	43054619	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152419.2	+1	reviewed	p.H605	0.779	93	0%	98	21.4%	46	17.3%	-	-	-	NULL
LYN	4067	genome.wustl.edu	37	8	56910958	56910958	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002350.2	+1	validated	p.L368	0.672	235	0%	247	15.8%	48	12.5%	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_TYR,superfamily_Protein kinase-like (PK-like)
NKAIN3	286183	genome.wustl.edu	37	8	63831073	63831073	+	Splice_Site	SNP	G	G	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173688.2	+1	provisional	e5+1	1.000	668	0.3%	591	39.4%	0	-	-	-	-	-
TRAM1	23471	genome.wustl.edu	37	8	71508498	71508498	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014294.5	-1	reviewed	p.T162I	1.000	228	0%	241	41.1%	144	45.8%	benign(0.103)	tolerated(0.29)	neutral(0.037)	HMMPfam_TRAM_LAG1_CLN8,HMMSmart_SM00724
SLC7A13	157724	genome.wustl.edu	37	8	87242122	87242122	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138817.2	-1	validated	p.V129I	0.007	149	0%	172	41.3%	0	-	benign(0.158)	tolerated(0.47)	neutral(0.025)	NULL
KIAA1429	25962	genome.wustl.edu	37	8	95523784	95523784	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015496.3	-1	validated	p.R1007C	1.000	139	0%	93	23.7%	26	15.3%	probably_damaging(0.995)	tolerated(0.06)	deleterious(0.780)	NULL
MATN2	4147	genome.wustl.edu	37	8	99045864	99045867	+	Frame_Shift_Del	DEL	AAGT	AAGT	-	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	AAGT	AAGT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002380.3	+1	reviewed	p.V932fs	1.000:1.000:1.000:0.998	-	-	-	-	-	-	-	-	-	HMMPfam_Matrilin_ccoil
KCNS2	3788	genome.wustl.edu	37	8	99440406	99440406	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020697.2	+1	provisional	p.R67W	0.998	44	0%	55	40%	0	-	possibly_damaging(0.893)	deleterious(0.01)	deleterious(0.758)	HMMSmart_SM00225,HMMPfam_K_tetra,superfamily_POZ domain
VPS13B	157680	genome.wustl.edu	37	8	100866138	100866138	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017890.3	+1	reviewed	p.Y3532	0.986	185	0%	159	12.6%	9	11.1%	-	-	-	NULL
RIMS2	9699	genome.wustl.edu	37	8	105001598	105001598	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001100117.1	+1	validated	p.R998Q	1.000	213	0%	236	14%	0	-	possibly_damaging(0.91)	tolerated(0.48)	neutral(0.373)	NULL
TG	7038	genome.wustl.edu	37	8	133923648	133923648	+	Silent	SNP	C	C	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003235.4	+1	reviewed	p.S1343	0.089	461	0%	432	39.6%	0	-	-	-	-	NULL
FLJ43860	389690	genome.wustl.edu	37	8	142487905	142487905	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207414.2	-1	validated	p.Q446*	0.915	31	0%	41	14.6%	0	-	-	-	-	NULL
ARC	23237	genome.wustl.edu	37	8	143694564	143694564	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015193.3	-1	validated	p.D357N	0.850	13	0%	18	33.3%	0	-	benign(0)	tolerated(0.26)	neutral(0.034)	NULL
ZNF250	58500	genome.wustl.edu	37	8	146107283	146107283	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021061.3	-1	validated	p.Q434*	0.048	240	0.4%	220	50.9%	9	66.6%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
KIAA2026	158358	genome.wustl.edu	37	9	5921489	5921489	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001017969.2	-1	validated	p.A1503T	0.584	229	0%	208	15.9%	12	0%	benign(0)	tolerated(0.45)	neutral(0.012)	NULL
PTPRD	5789	genome.wustl.edu	37	9	8528710	8528710	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002839.3	-1	reviewed	p.R141H	1.000	106	0.9%	92	18.5%	0	-	probably_damaging(1)	tolerated(0.14)	deleterious(0.750)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
SMC5	23137	genome.wustl.edu	37	9	72959093	72959093	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015110.3	+1	validated	p.R811G	0.637	121	0%	123	23.6%	10	0%	benign(0.114)	tolerated(0.31)	neutral(0.036)	HMMPfam_SMC_N,superfamily_SSF52540
PRUNE2	158471	genome.wustl.edu	37	9	79319892	79319892	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015225.2	-1	validated	p.A2433V	0.689	128	0%	110	14.5%	1	100%	possibly_damaging(0.896)	deleterious(0)	deleterious(0.798)	NULL
PTCH1	5727	genome.wustl.edu	37	9	98278959	98278961	+	In_Frame_Del	DEL	TTC	TTC	-	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	TTC	TTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001083603.1	-1	reviewed	p.E48in_frame_del	0.083:0.097:0.339	-	-	-	-	-	-	-	-	-	NULL
SLC44A1	23446	genome.wustl.edu	37	9	108072123	108072123	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080546.3	+1	validated	p.S82N	1.000	250	0%	230	15.2%	65	16.9%	probably_damaging(0.968)	deleterious(0)	deleterious(0.855)	NULL
BARHL1	56751	genome.wustl.edu	37	9	135458458	135458458	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020064.3	+1	validated	p.V92I	1.000	18	0%	25	44%	0	-	benign(0.157)	tolerated(0.15)	neutral(0.255)	NULL
OBP2B	29989	genome.wustl.edu	37	9	136081320	136081320	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014581.2	-1	validated	p.C166	0.014	323	0%	296	16.6%	1	0%	-	-	-	superfamily_Lipocalins
TUBB4B	10383	genome.wustl.edu	37	9	140137866	140137866	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006088.5	+1	validated	p.T399M	1.000	123	0%	142	17.6%	797	19.4%	probably_damaging(0.999)	-	-	superfamily_Tubulin C-terminal domain-like
PRKCQ	5588	genome.wustl.edu	37	10	6557095	6557095	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006257.2	-1	reviewed	p.M1I	1.000	62	0%	73	37%	2	50%	probably_damaging(0.986)	deleterious(0)	deleterious(0.879)	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
ARMC4	55130	genome.wustl.edu	37	10	28228843	28228843	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018076.2	-1	validated	p.A694T	1.000	126	0.8%	142	16.9%	5	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00185,superfamily_ARM repeat
ZNF22	7570	genome.wustl.edu	37	10	45499408	45499408	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006963.4	+1	validated	p.R198W	0.976	116	0%	115	47.8%	26	46.1%	probably_damaging(0.984)	deleterious(0)	deleterious(0.875)	NULL
GDF10	2662	genome.wustl.edu	37	10	48428877	48428877	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004962.2	-1	reviewed	p.R337C	0.194	59	0%	68	11.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PCDH15	65217	genome.wustl.edu	37	10	55591213	55591213	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142763.1	-1	reviewed	p.R1360Q	1.000	397	0%	307	36.8%	0	-	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	NULL
PTEN	5728	genome.wustl.edu	37	10	89624297	89624297	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000371953	+1	known	p.D24G	1.000	307	0.3%	278	40.6%	72	62.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II
PTEN	5728	genome.wustl.edu	37	10	89685300	89685300	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000371953	+1	known	p.Y65*	1.000	236	0%	172	40.1%	54	27.7%	-	-	-	HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II
BLNK	29760	genome.wustl.edu	37	10	97987276	97987276	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013314.3	-1	reviewed	p.Y84C	1.000	100	0%	75	37.3%	14	57.1%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
RRP12	23223	genome.wustl.edu	37	10	99129215	99129215	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015179.3	-1	validated	p.D974	0.001	37	0%	39	10.3%	44	2.2%	-	-	-	superfamily_ARM repeat
RRP12	23223	genome.wustl.edu	37	10	99129323	99129323	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015179.3	-1	validated	p.S938	0.000	48	0%	50	20%	34	11.7%	-	-	-	superfamily_ARM repeat
UBTD1	80019	genome.wustl.edu	37	10	99327804	99327804	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024954.3	+1	provisional	p.W68*	1.000	21	0%	17	29.4%	42	38%	-	-	-	NULL
ENTPD7	57089	genome.wustl.edu	37	10	101455841	101455841	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020354.3	+1	validated	p.Y324	1.000	198	0%	192	49%	8	100%	-	-	-	HMMPfam_GDA1_CD39
OBFC1	79991	genome.wustl.edu	37	10	105651996	105651998	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	CTT	CTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024928.4	-1	validated	p.K256in_frame_del	0.000:0.021:0.026	-	-	-	-	-	-	-	-	-	HMMPfam_DUF1879
SORCS1	114815	genome.wustl.edu	37	10	108923851	108923851	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001013031.1	-1	reviewed	p.R145Q	0.999	41	0%	58	34.5%	0	-	benign(0.098)	tolerated(0.24)	neutral(0.045)	NULL
RBM20	282996	genome.wustl.edu	37	10	112540840	112540840	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134363.1	+1	reviewed	p.A158V	0.000	85	0%	55	38.2%	0	-	benign(0.004)	deleterious(0.01)	neutral(0.406)	NULL
EIF3A	8661	genome.wustl.edu	37	10	120830573	120830573	+	Missense_Mutation	SNP	G	G	A	rs182093925	by1000genomes	TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003750.2	-1	validated	p.T189M	1.000	230	0%	227	42.7%	93	40.8%	unknown(0)	deleterious(0.01)	-	NULL
GRK5	2869	genome.wustl.edu	37	10	121184524	121184524	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005308.2	+1	reviewed	p.R154G	0.998	271	0%	220	41.4%	4	0%	benign(0.13)	tolerated(0.29)	neutral(0.040)	HMMPfam_RGS,HMMSmart_RGS,superfamily_Regulat_G_prot_signal_superfam
CPXM2	119587	genome.wustl.edu	37	10	125506309	125506309	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198148.2	-1	validated	p.R748W	0.511	61	0%	67	19.4%	2	0%	unknown(0)	deleterious(0)	-	NULL
SIGIRR	59307	genome.wustl.edu	37	11	408708	408708	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135053.1	-1	validated	p.H65N	0.997	65	0%	57	42.1%	48	58.3%	benign(0.013)	tolerated(0.15)	neutral(0.241)	superfamily_Immunoglobulin
DEAF1	10522	genome.wustl.edu	37	11	644594	644594	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021008.2	-1	validated	p.E552K	0.971	53	0%	42	52.4%	55	45.4%	benign(0.054)	tolerated(0.06)	neutral(0.326)	NULL
MUC5B	727897	genome.wustl.edu	37	11	1256573	1256573	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002458.1	+1	validated	p.I940T	0.082	92	0%	61	23%	11	9%	benign(0.018)	-	-	HMMPfam_VWD,HMMSmart_SM00216
MUC5B	727897	genome.wustl.edu	37	11	1272486	1272486	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002458.1	+1	validated	p.V4795	0.000	334	0%	355	25.6%	134	4.4%	-	-	-	NULL
LRRC4C	57689	genome.wustl.edu	37	11	40136523	40136523	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020929.1	-1	validated	p.T440	0.991	171	0%	147	43.5%	1	0%	-	-	-	HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
OR5D18	219438	genome.wustl.edu	37	11	55587915	55587915	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001952.1	+1	provisional	p.H270	0.271	271	0%	261	27.2%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
ENSG00000230416	0	genome.wustl.edu	37	11	56216194	56216194	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000415874	+1	known	p.S17	0.000	68	0%	58	60.3%	0	-	-	-	-	superfamily_Family A G protein-coupled receptor-like
FAM111B	374393	genome.wustl.edu	37	11	58893237	58893237	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198947.3	+1	validated	p.A556V	0.000	195	1%	175	40%	9	55.5%	benign(0.152)	tolerated(0.26)	neutral(0.048)	superfamily_Trypsin-like serine proteases
SLC22A8	9376	genome.wustl.edu	37	11	62760801	62760801	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004254.3	-1	reviewed	p.R513W	0.003	139	0%	120	24.2%	0	-	probably_damaging(0.982)	deleterious(0.01)	deleterious(0.832)	NULL
CCDC88B	283234	genome.wustl.edu	37	11	64111489	64111489	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032251.5	+1	reviewed	p.P492	0.005	33	0%	46	15.2%	0	-	-	-	-	NULL
CAPN1	823	genome.wustl.edu	37	11	64977563	64977563	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005186.2	+1	reviewed	p.S646	0.993	36	0%	33	21.2%	283	13.4%	-	-	-	HMMSmart_EFh,superfamily_SSF47473
SHANK2	22941	genome.wustl.edu	37	11	70821058	70821058	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000338508	-1	known	p.R174H	0.613	134	0%	144	43.1%	5	20%	benign(0.007)	tolerated(0.35)	neutral(0.021)	superfamily_ANK
INPPL1	3636	genome.wustl.edu	37	11	71943379	71943379	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001567.3	+1	reviewed	p.R571W	1.000	112	0%	96	16.7%	35	57.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_IPPc,HMMPfam_Exo_endo_phos,superfamily_Exo_endo_phos
RPS3	6188	genome.wustl.edu	37	11	75115230	75115230	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005.3	+1	reviewed	p.R173C	1.000	116	0%	154	45.5%	4919	40.6%	benign(0.014)	deleterious(0.03)	neutral(0.365)	HMMPfam_Ribosomal_S3_C,superfamily_Ribosomal protein S3 C-terminal domain,PatternScan_RIBOSOMAL_S3
RAB38	23682	genome.wustl.edu	37	11	87847215	87847215	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022337.1	-1	provisional	p.V193M	0.991	142	0%	124	32.3%	4	0%	benign(0.116)	deleterious(0.01)	neutral(0.415)	superfamily_SSF52540
NAALAD2	10003	genome.wustl.edu	37	11	89916152	89916152	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005467.3	+1	reviewed	p.G670D	1.000	175	0%	183	37.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TFR_dimer,superfamily_Transferrin receptor ectodomain C-terminal domain
GPR83	10888	genome.wustl.edu	37	11	94113719	94113721	+	In_Frame_Del	DEL	TCT	TCT	-	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	TCT	TCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016540.3	-1	validated	p.K289in_frame_del	1.000:0.989:0.990	-	-	-	-	-	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
BIRC2	329	genome.wustl.edu	37	11	102221167	102221167	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001166.3	+1	reviewed	p.W194*	1.000	167	0%	130	46.2%	20	30%	-	-	-	HMMPfam_BIR,HMMSmart_BIR,PatternScan_BIR_REPEAT_1,superfamily_SSF57924
MMP3	4314	genome.wustl.edu	37	11	102706913	102706913	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002422.3	-1	reviewed	p.P460S	0.981	455	0%	422	15.9%	3	0%	benign(0.011)	tolerated(0.34)	neutral(0.024)	superfamily_Hemopexin-like domain,HMMPfam_Hemopexin,HMMSmart_SM00120
LOC643733	643733	genome.wustl.edu	37	11	104776203	104776203	+	RNA	SNP	C	C	T	rs190968870	by1000genomes	TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XR_078449.1	-1	model	NULL	0.425	237	0%	201	19.4%	3	0%	-	-	-	-
MLL	4297	genome.wustl.edu	37	11	118375755	118375755	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005933.2	+1	validated	p.V3047M	0.998	142	0%	140	20%	11	27.2%	probably_damaging(0.992)	-	-	NULL
C2CD2L	9854	genome.wustl.edu	37	11	118982002	118982002	+	Silent	SNP	C	C	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014807.3	+1	validated	p.P276	0.718	206	0%	194	13.9%	12	25%	-	-	-	superfamily_C2_CaLB
PVRL1	5818	genome.wustl.edu	37	11	119549238	119549238	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002855.4	-1	reviewed	p.D106V	1.000	57	0%	56	16.1%	16	6.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
BARX2	8538	genome.wustl.edu	37	11	129321211	129321211	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003658.4	+1	reviewed	p.R252C	0.000	76	0%	67	20.9%	1	0%	benign(0.003)	tolerated(0.14)	neutral(0.249)	NULL
RAD52	5893	genome.wustl.edu	37	12	1025546	1025546	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_134424.2	-1	reviewed	p.V277I	0.000	46	0%	30	16.7%	6	0%	benign(0.062)	tolerated(0.21)	neutral(0.048)	NULL
ING4	51147	genome.wustl.edu	37	12	6762421	6762421	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127582.1	-1	reviewed	p.Q84R	1.000	181	0%	178	11.8%	37	16.2%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	NULL
USP5	8078	genome.wustl.edu	37	12	6972495	6972495	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098536.1	+1	validated	p.N636	1.000	241	0%	207	19.3%	7	0%	-	-	-	HMMPfam_UCH,superfamily_Cysteine proteinases
EMG1	10436	genome.wustl.edu	37	12	7084279	7084279	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000261406	+1	known	p.R146Q	1.000	526	0.2%	559	23.3%	85	35.2%	-	-	-	HMMPfam_EMG1
C1R	715	genome.wustl.edu	37	12	7241271	7241271	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000290575	-1	known	p.Q339*	0.848	336	0%	280	21.4%	85	0%	-	-	-	HMMPfam_Sushi,superfamily_Complement control module/SCR domain
CMAS	55907	genome.wustl.edu	37	12	22208521	22208521	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018686.3	+1	reviewed	p.R179Q	1.000	450	0%	412	36.2%	37	51.3%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_CTP_transf_3,superfamily_Nucleotide-diphospho-sugar transferases
ETNK1	55500	genome.wustl.edu	37	12	22796699	22796699	+	Silent	SNP	C	C	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018638.4	+1	reviewed	p.L142	0.553	163	0%	106	35.8%	11	54.5%	-	-	-	superfamily_Kinase_like
KRAS	3845	genome.wustl.edu	37	12	25398285	25398285	+	Missense_Mutation	SNP	C	C	A	rs121913530	byCluster	TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033360.2	-1	reviewed	p.G12C	1.000	303	0%	326	40.2%	16	43.7%	benign(0.045)	deleterious(0)	neutral(0.447)	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
PTHLH	5744	genome.wustl.edu	37	12	28116381	28116381	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198965.1	-1	reviewed	p.R142*	1.000	403	0%	440	40.9%	7	0%	-	-	-	NULL
OVCH1	341350	genome.wustl.edu	37	12	29648318	29648318	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_183378.2	-1	validated	p.N118	0.003	377	0%	341	37.8%	0	-	-	-	-	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
PKP2	5318	genome.wustl.edu	37	12	33030913	33030913	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004572.3	-1	reviewed	p.L301	0.000	46	0%	63	47.6%	57	47.3%	-	-	-	NULL
MLL2	8085	genome.wustl.edu	37	12	49442973	49442973	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003482.3	-1	validated	p.R1312H	1.000	114	0%	142	44.4%	1	0%	unknown(0)	-	-	NULL
OR6C74	254783	genome.wustl.edu	37	12	55641697	55641697	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005490.1	+1	provisional	p.L209Q	0.007	230	0%	232	15.5%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_7tm_1,superfamily_SSF81321
ESYT1	23344	genome.wustl.edu	37	12	56532712	56532712	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015292.2	+1	validated	p.T836I	0.947	254	0%	277	40.1%	74	47.2%	possibly_damaging(0.637)	tolerated(0.66)	neutral(0.226)	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
LRP1	4035	genome.wustl.edu	37	12	57579605	57579605	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002332.2	+1	reviewed	p.P2252H	0.996	80	0%	81	28.4%	13	30.7%	possibly_damaging(0.903)	deleterious(0.02)	deleterious(0.741)	superfamily_YWTD domain
LRP1	4035	genome.wustl.edu	37	12	57590832	57590832	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002332.2	+1	reviewed	p.S2987N	0.998	65	0%	47	40.4%	19	52.6%	benign(0.086)	tolerated(0.2)	neutral(0.056)	HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin,superfamily_YWTD domain
LRP1	4035	genome.wustl.edu	37	12	57605028	57605028	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002332.2	+1	reviewed	p.R4329H	1.000	66	0%	57	50.9%	59	27.1%	possibly_damaging(0.889)	tolerated(0.13)	deleterious(0.602)	HMMSmart_SM00181,PatternScan_EGF_1,superfamily_EGF/Laminin
KIF5A	3798	genome.wustl.edu	37	12	57944106	57944106	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004984.2	+1	reviewed	p.P18S	1.000	65	0%	50	54%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
CCT2	10576	genome.wustl.edu	37	12	69992134	69992134	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006431.2	+1	reviewed	p.Y456	1.000	113	0%	101	40.6%	347	48.4%	-	-	-	HMMPfam_Cpn60_TCP1,superfamily_GroEL equatorial domain-like
SYT1	6857	genome.wustl.edu	37	12	79747320	79747320	+	Silent	SNP	C	C	T	rs146053442	by1000genomes	TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135805.1	+1	validated	p.Y283	0.131	338	0%	338	17.5%	0	-	-	-	-	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
PPP1R12A	4659	genome.wustl.edu	37	12	80203758	80203758	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001143885.1	-1	reviewed	p.K424	1.000	419	0%	389	37.8%	6	33.3%	-	-	-	NULL
PPP1R12A	4659	genome.wustl.edu	37	12	80215937	80215937	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001143885.1	-1	reviewed	p.I276V	0.999	511	0%	435	40.9%	9	55.5%	benign(0)	tolerated(0.66)	neutral(0.003)	superfamily_Ankyrin repeat
CEP290	80184	genome.wustl.edu	37	12	88524171	88524171	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025114.3	-1	reviewed	p.I181	1.000	599	0%	479	19.6%	0	-	-	-	-	NULL
GNPTAB	79158	genome.wustl.edu	37	12	102183722	102183722	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024312.4	-1	reviewed	p.A106V	0.999	362	0%	341	37.8%	26	30.7%	benign(0.013)	tolerated(0.2)	neutral(0.050)	NULL
STAB2	55576	genome.wustl.edu	37	12	104107468	104107468	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017564.9	+1	reviewed	p.D1487N	0.069	189	0%	182	44.5%	0	-	possibly_damaging(0.517)	tolerated(1)	neutral(0.174)	HMMSmart_EGF,superfamily_SSF57196
STAB2	55576	genome.wustl.edu	37	12	104142892	104142892	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017564.9	+1	reviewed	p.N2132	0.905	44	0%	55	36.4%	0	-	-	-	-	HMMSmart_EGF,superfamily_SSF57196
PRDM4	11108	genome.wustl.edu	37	12	108133164	108133164	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012406.3	-1	reviewed	p.T697A	1.000	154	0%	113	41.6%	9	22.2%	benign(0.301)	deleterious(0.05)	neutral(0.439)	superfamily_SSF57667
TPCN1	53373	genome.wustl.edu	37	12	113730879	113730879	+	Splice_Site	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001143819.1	+1	validated	e26+1	1.000	36	0%	26	34.6%	10	100%	-	-	-	-
SETD8	387893	genome.wustl.edu	37	12	123879707	123879707	+	Missense_Mutation	SNP	G	G	A	rs115782694	by1000genomes	TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020382.3	+1	validated	p.A135T	1.000	96	0%	95	21.1%	22	22.7%	benign(0)	tolerated(0.35)	neutral(0.021)	NULL
NCOR2	9612	genome.wustl.edu	37	12	124886997	124886999	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	CTT	CTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006312.3	-1	validated	p.K531in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
TMEM132D	121256	genome.wustl.edu	37	12	129822249	129822249	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133448.2	-1	validated	p.T410M	0.913	76	0%	41	31.7%	0	-	possibly_damaging(0.679)	tolerated(0.09)	deleterious(0.538)	NULL
FBRSL1	57666	genome.wustl.edu	37	12	133148874	133148874	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142641.1	+1	validated	p.F478I	1.000	102	0%	102	12.7%	31	9.6%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
LATS2	26524	genome.wustl.edu	37	13	21562430	21562430	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014572.2	-1	reviewed	p.A497T	0.000	16	0%	13	38.5%	2	50%	benign(0.029)	deleterious(0.01)	neutral(0.407)	NULL
SHISA2	387914	genome.wustl.edu	37	13	26621089	26621089	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001007538.1	-1	provisional	p.Q150	0.999	38	0%	55	40%	4	25%	-	-	-	NULL
POMP	51371	genome.wustl.edu	37	13	29252193	29252193	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015932.4	+1	validated	p.M127T	1.000	434	0%	402	39.8%	390	43%	possibly_damaging(0.842)	deleterious(0.01)	deleterious(0.728)	HMMPfam_UMP1
FRY	10129	genome.wustl.edu	37	13	32759237	32759237	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_023037.2	+1	validated	p.R1091W	1.000	129	0%	135	22.2%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
BRCA2	675	genome.wustl.edu	37	13	32911454	32911454	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000059.3	+1	reviewed	p.D988N	0.000	91	0%	83	37.3%	2	100%	probably_damaging(0.956)	deleterious(0.03)	deleterious(0.764)	NULL
AKAP11	11215	genome.wustl.edu	37	13	42874833	42874833	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016248.2	+1	reviewed	p.A651S	1.000	115	0%	101	15.8%	9	22.2%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
KIAA1704	55425	genome.wustl.edu	37	13	45563829	45563829	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018559.2	+1	predicted	p.F14I	1.000	27	0%	21	23.8%	14	14.2%	probably_damaging(0.956)	deleterious(0.04)	deleterious(0.748)	NULL
PCDH17	27253	genome.wustl.edu	37	13	58208821	58208821	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040429.2	+1	reviewed	p.T714I	0.993	41	0%	55	12.7%	2	0%	benign(0.001)	tolerated(0.19)	neutral(0.050)	NULL
DZIP1	22873	genome.wustl.edu	37	13	96293635	96293635	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198968.2	-1	validated	p.K171E	0.846	78	0%	101	33.7%	12	50%	probably_damaging(0.996)	deleterious(0.03)	deleterious(0.826)	NULL
KDELC1	79070	genome.wustl.edu	37	13	103438652	103438652	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024089.2	-1	reviewed	p.R474Q	1.000	541	0%	488	16.8%	8	0%	possibly_damaging(0.687)	tolerated(0.36)	neutral(0.266)	HMMPfam_DUF821
ABHD13	84945	genome.wustl.edu	37	13	108881802	108881802	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032859.2	+1	validated	p.P79H	1.000	218	0%	203	13.8%	18	5.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_alpha/beta-Hydrolases
TMCO3	55002	genome.wustl.edu	37	13	114193789	114193789	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017905.4	+1	validated	p.D553N	1.000	149	0%	119	35.3%	115	44.3%	probably_damaging(1)	tolerated(0.49)	deleterious(0.510)	HMMPfam_Na_H_Exchanger
FAM70B	348013	genome.wustl.edu	37	13	114504642	114504642	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182614.2	+1	provisional	p.A176T	0.007	26	0%	27	22.2%	3	0%	benign(0.001)	tolerated(0.17)	neutral(0.059)	NULL
RNASE1	6035	genome.wustl.edu	37	14	21269942	21269942	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002933.4	-1	reviewed	p.G96W	0.448	205	0%	198	12.1%	139	2.8%	possibly_damaging(0.674)	deleterious(0.01)	deleterious(0.645)	HMMPfam_RnaseA,HMMSmart_SM00092,superfamily_RNase A-like
MYH7	4625	genome.wustl.edu	37	14	23884312	23884312	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000257.2	-1	reviewed	p.A1817	0.870	139	0%	145	19.3%	0	-	-	-	-	HMMPfam_Myosin_tail_1
NIN	51199	genome.wustl.edu	37	14	51273535	51273535	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020921.3	-1	reviewed	p.V62E	0.998	250	0%	255	27.8%	5	40%	unknown(0)	deleterious(0)	-	superfamily_EF-hand
HSPA2	3306	genome.wustl.edu	37	14	65009265	65009265	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021979.3	+1	validated	p.S566	1.000	112	0.9%	188	27.7%	9	0%	-	-	-	HMMPfam_HSP70,superfamily_SSF100934
SIPA1L1	26037	genome.wustl.edu	37	14	72191430	72191430	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015556.1	+1	provisional	p.R1519C	1.000	193	0%	201	21.9%	62	8%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
C14orf118	55668	genome.wustl.edu	37	14	76638194	76638194	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017926.2	+1	validated	p.E246K	1.000	308	0%	288	15.3%	12	25%	possibly_damaging(0.882)	deleterious(0)	deleterious(0.789)	NULL
C14orf102	55051	genome.wustl.edu	37	14	90783148	90783148	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017970.2	-1	validated	p.L61	0.997	122	0%	135	39.3%	6	50%	-	-	-	NULL
SMEK1	55671	genome.wustl.edu	37	14	91931710	91931710	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032560.4	-1	validated	p.R559C	1.000	296	0.3%	263	39.2%	28	50%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	NULL
MIR323A	442897	genome.wustl.edu	37	14	101492104	101492104	+	RNA	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000362199	+1	known	NULL	1.000	256	0%	313	41.2%	0	-	-	-	-	-
XRCC3	7517	genome.wustl.edu	37	14	104165287	104165287	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001100118.1	-1	reviewed	p.L297	0.997	22	0%	22	54.5%	13	38.4%	-	-	-	HMMPfam_Rad51,superfamily_P-loop containing nucleoside triphosphate hydrolases
KIF26A	26153	genome.wustl.edu	37	14	104641858	104641858	+	Silent	SNP	C	C	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015656.1	+1	validated	p.T911	0.000	9	0.000	7	0.714	0	-	-	-	-	NULL
TRPM1	4308	genome.wustl.edu	37	15	31294426	31294426	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002420.4	-1	reviewed	p.Q1471*	0.869	181	0%	234	11.5%	0	-	-	-	-	NULL
OTUD7A	161725	genome.wustl.edu	37	15	31776925	31776925	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_130901.1	-1	provisional	p.A451	0.998	55	0%	53	41.5%	0	-	-	-	-	NULL
GREM1	26585	genome.wustl.edu	37	15	33023224	33023224	+	Silent	SNP	C	C	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013372.5	+1	reviewed	p.R111	0.998	57	0%	63	34.9%	0	-	-	-	-	HMMPfam_DAN,HMMSmart_SM00041
AVEN	57099	genome.wustl.edu	37	15	34159707	34159707	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020371.2	-1	validated	p.Q321R	0.011	243	0%	203	15.8%	27	7.4%	probably_damaging(0.978)	tolerated(0.18)	deleterious(0.476)	NULL
ACTC1	70	genome.wustl.edu	37	15	35085623	35085625	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	AGA	AGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005159.4	-1	reviewed	p.F92in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain
TGM5	9333	genome.wustl.edu	37	15	43531039	43531039	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_201631.3	-1	reviewed	p.T441A	1.000	329	0%	335	40%	2	100%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_Cysteine proteinases
SLC28A2	9153	genome.wustl.edu	37	15	45557833	45557833	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004212.3	+1	validated	p.L278Q	1.000	433	0.2%	378	38.6%	13	30.7%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_Gate
MYO5A	4644	genome.wustl.edu	37	15	52662539	52662539	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000259.3	-1	reviewed	p.R965*	1.000	225	0%	197	22.3%	1	0%	-	-	-	NULL
RNF111	54778	genome.wustl.edu	37	15	59350735	59350735	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017610.6	+1	reviewed	p.G451D	0.998	171	0%	201	12.9%	15	6.6%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
FAM81A	145773	genome.wustl.edu	37	15	59752244	59752244	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152450.2	+1	validated	p.A45T	0.827	101	0%	97	37.1%	1	0%	probably_damaging(0.996)	tolerated(0.15)	deleterious(0.703)	NULL
NPTN	27020	genome.wustl.edu	37	15	73889671	73889671	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012428.3	-1	reviewed	p.T44M	1.000	70	0%	68	20.6%	0	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMSmart_IGc2,superfamily_SSF48726
FBXO22	26263	genome.wustl.edu	37	15	76225111	76225111	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_147188.1	+1	reviewed	p.E294K	0.998	266	0%	249	23.7%	68	44.1%	benign(0.156)	tolerated(0.52)	neutral(0.022)	NULL
ADAMTS7	11173	genome.wustl.edu	37	15	79080606	79080606	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014272.3	-1	reviewed	p.R430H	1.000	92	0%	78	21.8%	2	50%	possibly_damaging(0.654)	deleterious(0.04)	deleterious(0.579)	"HMMPfam_Reprolysin,superfamily_Metalloproteases (""zincins"") catalytic domain"
KIAA1024	23251	genome.wustl.edu	37	15	79755630	79755630	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015206.2	+1	validated	p.G840	0.010	70	0%	81	12.3%	0	-	-	-	-	HMMPfam_UPF0258
TMC3	342125	genome.wustl.edu	37	15	81635683	81635683	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080532.1	-1	provisional	p.E551K	1.000	196	0%	171	31.6%	1	0%	possibly_damaging(0.67)	tolerated(0.24)	neutral(0.275)	HMMPfam_TMC
MRPS11	64963	genome.wustl.edu	37	15	89018470	89018470	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022839.2	+1	reviewed	p.A137	0.012	100	0%	100	21%	87	22.9%	-	-	-	HMMPfam_Ribosomal_S11,superfamily_Translational machinery components
IGF1R	3480	genome.wustl.edu	37	15	99500577	99500577	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000875.3	+1	reviewed	p.R1337H	0.900	20	0%	26	42.3%	39	46.1%	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	NULL
TPSG1	25823	genome.wustl.edu	37	16	1272829	1272829	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012467.3	-1	reviewed	p.L112M	0.002	40	0%	19	31.6%	0	-	benign(0.11)	tolerated(0.43)	neutral(0.022)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
C16orf79	283870	genome.wustl.edu	37	16	2259444	2259444	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182563.2	-1	provisional	p.Q202	1.000	40	0%	59	27.1%	3	0%	-	-	-	NULL
C16orf71	146562	genome.wustl.edu	37	16	4796448	4796449	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	AG	AG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139170.2	+1	validated	p.E373fs	0.003:0.466	-	-	-	-	-	-	-	-	-	NULL
USP7	7874	genome.wustl.edu	37	16	8987959	8987959	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003470.2	-1	validated	p.N1069D	1.000	208	0%	204	33.8%	145	52.4%	benign(0.407)	tolerated(0.7)	neutral(0.134)	NULL
TEKT5	146279	genome.wustl.edu	37	16	10769918	10769918	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144674.1	-1	provisional	p.S328	0.047	162	0.6%	169	24.3%	3	33.3%	-	-	-	HMMPfam_Tektin
NOMO3	408050	genome.wustl.edu	37	16	16355405	16355405	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004067.2	+1	reviewed	p.V423I	0.377	579	0%	526	37.6%	19	0%	benign(0)	tolerated(0.4)	neutral(0.016)	NULL
ERN2	10595	genome.wustl.edu	37	16	23702160	23702160	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033266.3	-1	validated	p.G973W	0.296	36	0%	48	25%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
IL21R	50615	genome.wustl.edu	37	16	27441399	27441399	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021798.2	+1	reviewed	p.R3C	0.000	17	0%	15	46.7%	0	-	benign(0.004)	tolerated(0.11)	neutral(0.272)	NULL
SPNS1	83985	genome.wustl.edu	37	16	28995174	28995174	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142448.1	+1	validated	p.S463L	0.995	53	0%	41	14.6%	58	43.1%	possibly_damaging(0.858)	deleterious(0.01)	deleterious(0.737)	superfamily_MFS general substrate transporter
SRCAP	10847	genome.wustl.edu	37	16	30750334	30750342	+	In_Frame_Del	DEL	CACTGTCAC	CACTGTCAC	-	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	CACTGTCAC	CACTGTCAC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006662.2	+1	validated	p.TVT2995in_frame_del	1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.997:0.997	-	-	-	-	-	-	-	-	-	NULL
RNF40	9810	genome.wustl.edu	37	16	30780688	30780688	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014771.2	+1	reviewed	p.L810S	1.000	137	0%	178	44.4%	64	45.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SETD1A	9739	genome.wustl.edu	37	16	30976673	30976673	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014712.1	+1	provisional	p.G537V	1.000	32	0%	33	12.1%	11	0%	probably_damaging(1)	-	-	NULL
LOC729264	729264	genome.wustl.edu	37	16	32264733	32264733	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001133674.2	+1	model	p.A20V	0.193	210	0.5%	243	9.5%	0	-	-	-	-	NULL
SLC12A4	6560	genome.wustl.edu	37	16	67983738	67983738	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005072.4	-1	validated	p.I571	0.676	116	0%	122	27%	15	40%	-	-	-	HMMPfam_AA_permease
HYDIN	54768	genome.wustl.edu	37	16	71103373	71103373	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032821.2	-1	validated	p.N591D	1.000	254	0%	264	12.1%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
IST1	9798	genome.wustl.edu	37	16	71955269	71955269	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000424485	+1	known	p.S119G	1.000	233	0%	200	19%	68	7.3%	-	-	-	NULL
ZFHX3	463	genome.wustl.edu	37	16	72821591	72821591	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006885.3	-1	reviewed	p.S3528	1.000	25	0%	28	50%	3	33.3%	-	-	-	HMMSmart_SM00451
ACSF3	197322	genome.wustl.edu	37	16	89187240	89187240	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127214.1	+1	validated	p.Q386H	0.997	99	0%	106	16%	24	0%	benign(0.085)	deleterious(0)	neutral(0.451)	HMMPfam_AMP-binding,superfamily_SSF56801
ANKRD11	29123	genome.wustl.edu	37	16	89352005	89352005	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013275.4	-1	validated	p.D315	1.000	360	0.3%	357	13.2%	15	0%	-	-	-	superfamily_Ankyrin repeat
PRPF8	10594	genome.wustl.edu	37	17	1579594	1579594	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006445.3	-1	reviewed	p.R820H	1.000	137	0%	176	37.5%	57	52.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ZZEF1	23140	genome.wustl.edu	37	17	3955432	3955432	+	Splice_Site	SNP	T	T	C	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015113.3	-1	validated	e35-2	1.000	91	0%	105	15.2%	0	-	-	-	-	-
ARRB2	409	genome.wustl.edu	37	17	4621595	4621595	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004313.3	+1	reviewed	p.V221I	1.000	310	0%	278	39.2%	36	13.8%	possibly_damaging(0.451)	tolerated(0.84)	neutral(0.148)	HMMPfam_Arrestin_C,superfamily_E set domains
NEURL4	84461	genome.wustl.edu	37	17	7224120	7224120	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032442.2	-1	validated	p.I1161	0.209	68	0%	86	17.4%	12	8.3%	-	-	-	HMMPfam_Neuralized,HMMSmart_SM00588
SENP3	26168	genome.wustl.edu	37	17	7473676	7473676	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000321337	+1	known	p.D449fs	1.000	-	-	-	-	-	-	-	-	-	HMMPfam_Peptidase_C48,superfamily_SSF54001
TP53	7157	genome.wustl.edu	37	17	7577551	7577551	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000546.4	-1	reviewed	p.G244S	1.000	154	0%	110	16.4%	115	7.8%	possibly_damaging(0.721)	deleterious(0)	deleterious(0.706)	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53
CHD3	1107	genome.wustl.edu	37	17	7793982	7793982	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005271.2	+1	reviewed	p.R162*	0.998	184	0%	225	39.1%	37	5.4%	-	-	-	NULL
DNAH9	1770	genome.wustl.edu	37	17	11725851	11725851	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001372.3	+1	reviewed	p.E2983K	1.000	150	0%	138	29%	2	50%	possibly_damaging(0.82)	deleterious(0.04)	deleterious(0.659)	superfamily_P-loop containing nucleoside triphosphate hydrolases
ENSG00000249596	0	genome.wustl.edu	37	17	18028635	18028635	+	RNA	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000503497	-1	novel	NULL	0.000	58	0%	61	42.6%	0	-	-	-	-	-
MYO15A	51168	genome.wustl.edu	37	17	18036615	18036615	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016239.3	+1	reviewed	p.G1466V	0.996	90	0%	81	17.3%	0	-	probably_damaging(0.995)	-	-	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
ENSG00000248683	0	genome.wustl.edu	37	17	18574662	18574662	+	RNA	DEL	C	C	-	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000507743	+1	novel	NULL	0.997	-	-	-	-	-	-	-	-	-	-
MED24	9862	genome.wustl.edu	37	17	38186009	38186012	+	Frame_Shift_Del	DEL	TGTT	TGTT	-	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	TGTT	TGTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014815.3	-1	reviewed	p.N419fs	1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
NR1D1	9572	genome.wustl.edu	37	17	38250184	38250184	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021724.2	-1	provisional	p.A542	0.852	35	0%	47	29.8%	27	22.2%	-	-	-	HMMPfam_Hormone_recep,HMMSmart_HOLI,superfamily_Str_ncl_receptor
KRT12	3859	genome.wustl.edu	37	17	39020022	39020022	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000223.3	-1	reviewed	p.M301T	1.000	116	0%	108	14.8%	0	-	probably_damaging(0.963)	tolerated(0.1)	deleterious(0.692)	HMMPfam_Filament
KRTAP9-6	100507608	genome.wustl.edu	37	17	39421652	39421652	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000391355	+1	known	p.G8D	0.965	454	0%	479	16.1%	0	-	unknown(0)	tolerated(0.09)	-	HMMPfam_Keratin_B2
KRT13	3860	genome.wustl.edu	37	17	39659909	39659909	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153490.2	-1	reviewed	p.D188	0.954	213	0%	215	15.3%	1	0%	-	-	-	HMMPfam_Filament
PLEKHH3	79990	genome.wustl.edu	37	17	40824230	40824230	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024927.4	-1	validated	p.G317V	0.382	33	0%	31	25.8%	17	23.5%	possibly_damaging(0.515)	deleterious(0.03)	deleterious(0.538)	HMMPfam_MyTH4,HMMSmart_SM00139
BRCA1	672	genome.wustl.edu	37	17	41246507	41246507	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000473961	-1	known	p.C213Y	0.000	341	0.3%	323	20.7%	2	0%	-	-	-	NULL
DHX8	1659	genome.wustl.edu	37	17	41561546	41561546	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004941.1	+1	reviewed	p.K47	1.000	107	0%	96	22.9%	13	53.8%	-	-	-	NULL
ITGB3	3690	genome.wustl.edu	37	17	45369720	45369720	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000212.2	+1	reviewed	p.W492*	1.000	119	0%	98	21.4%	1	0%	-	-	-	PatternScan_EGF_1,PatternScan_EGF_2,superfamily_EGF/Laminin
IGF2BP1	10642	genome.wustl.edu	37	17	47115724	47115724	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006546.3	+1	reviewed	p.R199Q	1.000	32	0%	30	60%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00322,HMMPfam_KH_1,superfamily_Eukaryotic type KH-domain (KH-domain type I)
C17orf67	339210	genome.wustl.edu	37	17	54872503	54872503	+	Silent	SNP	A	A	C	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001085430.1	-1	validated	p.A89	0.001	167	0%	151	22.5%	1	0%	-	-	-	NULL
DDX42	11325	genome.wustl.edu	37	17	61876952	61876952	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007372.2	+1	reviewed	p.G146	1.000	554	0%	514	11.5%	41	19.5%	-	-	-	NULL
SCN4A	6329	genome.wustl.edu	37	17	62050154	62050154	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000334.4	-1	reviewed	p.C16	0.998	44	0%	38	42.1%	0	-	-	-	-	NULL
SYNGR2	9144	genome.wustl.edu	37	17	76167915	76167915	+	Silent	SNP	C	C	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004710.3	+1	reviewed	p.A191	0.999	110	0%	101	18.8%	665	36%	-	-	-	NULL
AZI1	22994	genome.wustl.edu	37	17	79166389	79166389	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014984.2	-1	validated	p.R812W	1.000	38	0%	26	42.3%	8	62.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
HGS	9146	genome.wustl.edu	37	17	79654056	79654056	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004712.3	+1	provisional	p.N74	1.000	70	0%	75	29.3%	67	13.4%	-	-	-	HMMPfam_VHS,superfamily_ENTH/VHS domain,HMMSmart_SM00288
LOC100288932	100288932	genome.wustl.edu	37	18	10471887	10471887	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002344139.1	-1	model	p.G70S	0.937	54	0%	38	34.2%	49	0%	-	-	-	NULL
ANKRD30B	374860	genome.wustl.edu	37	18	14851757	14851757	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145029.1	+1	validated	p.A1153T	0.892	105	0%	94	45.7%	0	-	possibly_damaging(0.462)	tolerated(0.32)	neutral(0.175)	NULL
GREB1L	80000	genome.wustl.edu	37	18	19080511	19080511	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142966.1	+1	provisional	p.T1327M	0.999	127	0%	107	11.2%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
LAMA3	3909	genome.wustl.edu	37	18	21453155	21453155	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000227.3	+1	reviewed	p.S49R	0.903	96	0%	111	21.6%	23	0%	probably_damaging(0.958)	deleterious(0.04)	deleterious(0.750)	NULL
OSBPL1A	114876	genome.wustl.edu	37	18	21750301	21750303	+	In_Frame_Del	DEL	TTC	TTC	-	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	TTC	TTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080597.2	-1	reviewed	p.K802in_frame_del	0.994:0.996:0.942	-	-	-	-	-	-	-	-	-	HMMPfam_Oxysterol_BP
DSG3	1830	genome.wustl.edu	37	18	29054324	29054324	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001944.2	+1	reviewed	p.D781G	0.742	304	0%	293	37.2%	0	-	benign(0.002)	deleterious(0.03)	neutral(0.364)	NULL
EPG5	57724	genome.wustl.edu	37	18	43440245	43440246	+	In_Frame_Ins	INS	-	-	TCA	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020964.2	-1	validated	p.2278in_frame_insM	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
C18orf25	147339	genome.wustl.edu	37	18	43796549	43796549	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145055.3	+1	validated	p.A235T	1.000	30	0%	29	27.6%	9	88.8%	probably_damaging(1)	tolerated(0.41)	deleterious(0.515)	NULL
ALPK2	115701	genome.wustl.edu	37	18	56246440	56246440	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052947.3	-1	validated	p.K523fs	0.000	-	-	-	-	-	-	-	-	-	NULL
POLRMT	5442	genome.wustl.edu	37	19	619016	619016	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005035.3	-1	reviewed	p.R1083H	1.000	70	0%	69	27.5%	78	33.3%	benign(0.004)	tolerated(1)	-	HMMPfam_RNA_pol,superfamily_SSF56672
KISS1R	84634	genome.wustl.edu	37	19	918607	918607	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032551.4	+1	reviewed	p.Y103F	0.981	28	0%	27	37%	6	66.6%	benign(0.141)	tolerated(0.22)	neutral(0.054)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
WDR18	57418	genome.wustl.edu	37	19	991256	991256	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024100.3	+1	reviewed	p.T279I	0.300	29	0%	30	36.7%	139	26.6%	benign(0.002)	tolerated(0.39)	neutral(0.016)	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40
EVI5L	115704	genome.wustl.edu	37	19	7913953	7913953	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145245.3	+1	validated	p.I158	0.339	33	0%	39	15.4%	15	33.3%	-	-	-	HMMPfam_TBC,HMMSmart_TBC,superfamily_RabGAP_TBC
HNRNPM	4670	genome.wustl.edu	37	19	8550916	8550916	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005968.3	+1	validated	p.A535V	0.849	27	0%	23	17.4%	282	31.5%	benign(0.029)	deleterious(0.03)	neutral(0.366)	NULL
ACTL9	284382	genome.wustl.edu	37	19	8808404	8808404	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178525.3	-1	validated	p.H216	0.982	19	0%	20	25%	0	-	-	-	-	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain
MUC16	94025	genome.wustl.edu	37	19	9072190	9072190	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024690.2	-1	validated	p.R5086C	0.000	299	0%	318	23.3%	7	14.2%	unknown(0)	-	-	NULL
ZNF564	163050	genome.wustl.edu	37	19	12638345	12638345	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144976.3	-1	validated	p.G193*	1.000	365	0%	318	14.8%	11	45.4%	-	-	-	superfamily_C2H2 and C2HC zinc fingers
ILVBL	10994	genome.wustl.edu	37	19	15234252	15234252	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006844.3	-1	reviewed	p.R91C	1.000	30	0%	44	36.4%	44	27.2%	possibly_damaging(0.729)	deleterious(0)	deleterious(0.710)	HMMPfam_TPP_enzyme_N,superfamily_Thiamin diphosphate-binding fold (THDP-binding)
NOTCH3	4854	genome.wustl.edu	37	19	15298704	15298704	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000435.2	-1	reviewed	p.R532C	1.000	13	0%	18	27.8%	80	37.5%	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_EGF/Laminin
AKAP8L	26993	genome.wustl.edu	37	19	15514458	15514458	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014371.2	-1	validated	p.A64S	1.000	183	0%	181	14.4%	24	4.1%	possibly_damaging(0.892)	deleterious(0)	deleterious(0.796)	NULL
FAM129C	199786	genome.wustl.edu	37	19	17644402	17644402	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173544.4	+1	validated	p.E138K	0.558	87	0%	98	17.3%	0	-	possibly_damaging(0.8)	tolerated(0.07)	deleterious(0.620)	HMMSmart_SM00233,superfamily_PH domain-like
SLC5A5	6528	genome.wustl.edu	37	19	17985339	17985339	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000453.2	+1	reviewed	p.L154I	0.990	124	0%	132	46.2%	0	-	probably_damaging(0.953)	deleterious(0.03)	deleterious(0.761)	HMMPfam_SSF
COMP	1311	genome.wustl.edu	37	19	18901372	18901372	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000095.2	-1	reviewed	p.C72	1.000	105	0%	92	13%	1	0%	-	-	-	NULL
ZNF85	7639	genome.wustl.edu	37	19	21132217	21132217	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003429.3	+1	validated	p.S299	0.000	69	0%	66	50%	2	0%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
VSTM2B	342865	genome.wustl.edu	37	19	30054821	30054821	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000335523	+1	known	p.R280C	0.087	240	0%	229	38.4%	0	-	unknown(0)	tolerated(0.16)	-	NULL
ZNF507	22847	genome.wustl.edu	37	19	32847540	32847541	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	GA	GA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136156.1	+1	validated	p.E718fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
MAG	4099	genome.wustl.edu	37	19	35800857	35800857	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002361.2	+1	reviewed	p.P438S	1.000	21	0%	30	36.7%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF48726
MLL4	9757	genome.wustl.edu	37	19	36211625	36211625	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014727.1	+1	reviewed	p.P459H	0.975	30	0%	23	60.9%	10	50%	unknown(0)	deleterious(0)	-	NULL
MLL4	9757	genome.wustl.edu	37	19	36211742	36211742	+	Missense_Mutation	SNP	C	C	A	rs80216638	byCluster;byFrequency;by1000genomes	TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014727.1	+1	reviewed	p.T498N	0.046	12	25%	24	62.5%	4	75%	unknown(0)	tolerated(0.37)	-	NULL
ARHGAP33	115703	genome.wustl.edu	37	19	36278727	36278727	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052948.3	+1	reviewed	p.Y926C	1.000	40	0%	31	51.6%	2	50%	probably_damaging(0.983)	deleterious(0)	deleterious(0.873)	NULL
TYROBP	7305	genome.wustl.edu	37	19	36398641	36398641	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198125.2	-1	reviewed	p.A29T	0.998	133	0%	142	36.6%	67	0%	possibly_damaging(0.913)	deleterious(0.05)	deleterious(0.710)	NULL
RYR1	6261	genome.wustl.edu	37	19	38956836	38956836	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000540.2	+1	reviewed	p.H992Q	1.000	24	0%	29	37.9%	0	-	possibly_damaging(0.794)	-	-	HMMPfam_RyR
ENSG00000213926	0	genome.wustl.edu	37	19	39745611	39745611	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000396851	-1	known	p.S96N	1.000	60	0%	41	19.5%	0	-	-	-	-	HMMPfam_SelR,superfamily_Mss4-like
CYP2A7	1549	genome.wustl.edu	37	19	41383138	41383138	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000764.2	-1	reviewed	p.R373M	0.000	259	0%	210	11.9%	0	-	probably_damaging(0.963)	tolerated(0.11)	deleterious(0.677)	HMMPfam_p450,superfamily_Cytochrome_P450
ATP1A3	478	genome.wustl.edu	37	19	42471416	42471416	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152296.3	-1	reviewed	p.R1000C	1.000	62	0%	46	28.3%	1	0%	possibly_damaging(0.895)	deleterious(0.01)	deleterious(0.758)	superfamily_SSF81665
CBLC	23624	genome.wustl.edu	37	19	45303674	45303674	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012116.3	+1	validated	p.G467*	0.000	71	0%	62	43.5%	59	49.1%	-	-	-	NULL
PRKD2	25865	genome.wustl.edu	37	19	47197139	47197139	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001079880.1	-1	reviewed	p.A523	0.003	75	0%	61	16.4%	48	16.6%	-	-	-	NULL
SLC8A2	6543	genome.wustl.edu	37	19	47935353	47935353	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000391903	-1	known	p.A648	0.000	34	0%	43	32.6%	0	-	-	-	-	NULL
GLTSCR2	29997	genome.wustl.edu	37	19	48258061	48258061	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015710.4	+1	validated	p.A322	0.000	13	0%	23	39.1%	292	46.2%	-	-	-	HMMPfam_Nop53
CYTH2	9266	genome.wustl.edu	37	19	48977229	48977229	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017457.4	+1	reviewed	p.A168T	1.000	89	0%	79	34.2%	72	40.2%	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	HMMPfam_Sec7,HMMSmart_SM00222,superfamily_Sec7 domain
PNKP	11284	genome.wustl.edu	37	19	50365843	50365843	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007254.2	-1	provisional	p.N296K	1.000	26	0%	21	19%	39	7.6%	benign(0.031)	tolerated(0.33)	neutral(0.026)	HMMPfam_PNK3P,superfamily_SSF56784
ZNF836	162962	genome.wustl.edu	37	19	52658196	52658196	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001102657.1	-1	provisional	p.A914T	0.093	445	0%	429	12.8%	2	0%	benign(0.008)	deleterious(0.01)	neutral(0.406)	superfamily_SSF57667
RDH13	112724	genome.wustl.edu	37	19	55568112	55568112	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138412.3	-1	reviewed	p.R12	0.000	161	0%	111	20.7%	13	53.8%	-	-	-	superfamily_NAD(P)-binding Rossmann-fold domains
U2AF2	11338	genome.wustl.edu	37	19	56172440	56172440	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007279.2	+1	reviewed	p.T124N	1.000	128	0%	102	45.1%	192	43.2%	possibly_damaging(0.731)	tolerated(0.24)	neutral(0.304)	NULL
OVOL2	58495	genome.wustl.edu	37	20	18005299	18005299	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021220.2	-1	validated	p.E270G	0.971	205	0%	273	12.5%	45	2.2%	benign(0.006)	deleterious(0.01)	neutral(0.406)	NULL
CSRP2BP	57325	genome.wustl.edu	37	20	18143395	18143395	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020536.4	+1	reviewed	p.R493C	1.000	92	0%	122	15.6%	29	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
RALGAPA2	57186	genome.wustl.edu	37	20	20586007	20586007	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020343.2	-1	validated	p.R617Q	1.000	129	0%	124	25%	4	0%	probably_damaging(1)	tolerated(0.26)	deleterious(0.534)	NULL
RALGAPA2	57186	genome.wustl.edu	37	20	20618076	20618076	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020343.2	-1	validated	p.R246*	1.000	175	0%	183	17.5%	2	0%	-	-	-	NULL
GZF1	64412	genome.wustl.edu	37	20	23345952	23345954	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	AGA	AGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022482.3	+1	validated	p.K314in_frame_del	0.001:0.001:0.017	-	-	-	-	-	-	-	-	-	superfamily_C2H2 and C2HC zinc fingers
EFCAB8	388795	genome.wustl.edu	37	20	31481016	31481016	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000400522	+1	known	p.T273M	0.998	173	0%	136	19.1%	0	-	-	-	-	superfamily_WD40 repeat-like
TP53INP2	58476	genome.wustl.edu	37	20	33296632	33296632	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021202.1	+1	provisional	p.D30V	1.000	91	0%	104	40.4%	3	33.3%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
NCOA6	23054	genome.wustl.edu	37	20	33345744	33345744	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014071.2	-1	reviewed	p.Q269	0.002	145	2.1%	170	39.4%	10	60%	-	-	-	NULL
DSN1	79980	genome.wustl.edu	37	20	35399305	35399305	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145315.1	-1	reviewed	p.S109L	0.999	111	0%	118	11%	9	11.1%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_Mis12_component
SERINC3	10955	genome.wustl.edu	37	20	43129864	43129864	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006811.2	-1	validated	p.T378S	0.000	143	0%	169	43.2%	69	47.8%	benign(0)	tolerated(0.83)	neutral(0.001)	HMMPfam_Serinc
PABPC1L	80336	genome.wustl.edu	37	20	43565343	43565343	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000372826	+1	known	p.R75H	0.002	41	0%	43	37.2%	7	0%	-	-	-	HMMPfam_PABP,superfamily_PABC (PABP) domain
NFATC2	4773	genome.wustl.edu	37	20	50139701	50139701	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173091.2	-1	reviewed	p.R360M	0.998	38	0%	33	30.3%	2	50%	possibly_damaging(0.508)	tolerated(0.06)	deleterious(0.493)	NULL
SALL4	57167	genome.wustl.edu	37	20	50408037	50408037	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020436.3	-1	reviewed	p.R329S	0.070	57	0%	57	26.3%	1	0%	probably_damaging(0.996)	tolerated(0.99)	neutral(0.462)	NULL
RAE1	8480	genome.wustl.edu	37	20	55940493	55940493	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001015885.1	+1	reviewed	p.A124T	1.000	95	0%	84	31%	34	23.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
BACH1	571	genome.wustl.edu	37	21	30715024	30715024	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001186.2	+1	reviewed	p.R694Q	0.000	63	0%	59	23.7%	10	10%	benign(0.001)	tolerated(0.5)	neutral(0.010)	NULL
CLDN8	9073	genome.wustl.edu	37	21	31587886	31587886	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199328.2	-1	reviewed	p.L120	0.638	136	0%	116	14.7%	1	100%	-	-	-	HMMPfam_PMP22_Claudin
KRTAP13-1	140258	genome.wustl.edu	37	21	31768471	31768471	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181599.2	+1	validated	p.A23S	0.004	228	0%	251	38.2%	0	-	benign(0)	tolerated(0.61)	neutral(0.004)	HMMPfam_PMG
KRTAP21-1	337977	genome.wustl.edu	37	21	32127678	32127678	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181619.1	-1	provisional	p.G7S	0.422	244	0%	270	44.8%	0	-	unknown(0)	tolerated(0.52)	-	NULL
TIAM1	7074	genome.wustl.edu	37	21	32502539	32502539	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000423206	-1	known	p.R1*	0.995	72	0%	82	53.7%	1	0%	benign(0.004)	tolerated(0.09)	neutral(0.296)	NULL
SCAF4	57466	genome.wustl.edu	37	21	33068476	33068476	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020706.2	-1	reviewed	p.Q340*	1.000	150	0%	181	14.4%	23	0%	-	-	-	NULL
HUNK	30811	genome.wustl.edu	37	21	33368255	33368255	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014586.1	+1	validated	p.D494N	0.984	60	1.7%	51	43.1%	0	-	possibly_damaging(0.798)	deleterious(0.03)	deleterious(0.665)	NULL
CHAF1B	8208	genome.wustl.edu	37	21	37785304	37785304	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005441.2	+1	reviewed	p.P395H	0.971	117	0%	118	22%	26	34.6%	possibly_damaging(0.845)	deleterious(0.01)	deleterious(0.730)	NULL
BACE2	25825	genome.wustl.edu	37	21	42609502	42609502	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012105.3	+1	reviewed	p.T155M	0.960	166	0%	195	24.1%	119	30.2%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_Asp,superfamily_Acid proteases
HSF2BP	11077	genome.wustl.edu	37	21	45053166	45053166	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007031.1	-1	reviewed	p.A143V	0.966	229	0%	242	42.6%	0	-	benign(0.036)	tolerated(0.27)	neutral(0.036)	superfamily_ARM repeat
YBEY	54059	genome.wustl.edu	37	21	47716081	47716081	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_058181.1	+1	validated	p.T115	0.290	47	0%	30	26.7%	23	26%	-	-	-	"HMMPfam_UPF0054,superfamily_Metalloproteases (""zincins"") catalytic domain"
GAB4	128954	genome.wustl.edu	37	22	17450936	17450936	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001037814.1	-1	provisional	p.Q278	0.997	156	0%	159	15.1%	0	-	-	-	-	NULL
PRODH	5625	genome.wustl.edu	37	22	18913199	18913199	+	Splice_Site	SNP	A	A	G	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016335.3	-1	reviewed	e3+2	1.000	30	0%	45	24.4%	0	-	-	-	-	-
LZTR1	8216	genome.wustl.edu	37	22	21346572	21346572	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006767.3	+1	reviewed	p.R355W	0.998	104	0%	76	50%	12	16.6%	probably_damaging(0.995)	tolerated(0.18)	deleterious(0.514)	superfamily_Galactose oxidase central domain
CHEK2	11200	genome.wustl.edu	37	22	29115437	29115437	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005735.1	-1	reviewed	p.S253*	0.997	193	0%	203	18.7%	12	8.3%	-	-	-	superfamily_SMAD/FHA domain,superfamily_Protein kinase-like (PK-like)
EWSR1	2130	genome.wustl.edu	37	22	29692298	29692298	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005243.3	+1	reviewed	p.D412N	0.989	100	0%	121	14%	253	8.6%	probably_damaging(0.987)	deleterious(0.01)	deleterious(0.842)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
AP1B1	162	genome.wustl.edu	37	22	29735003	29735003	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127.3	-1	reviewed	p.S713	0.993	95	0%	78	17.9%	191	11.5%	-	-	-	NULL
NEFH	4744	genome.wustl.edu	37	22	29886276	29886276	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021076.3	+1	reviewed	p.E883K	0.987	228	0%	241	18.7%	0	-	unknown(0)	deleterious(0.02)	-	NULL
CSF2RB	1439	genome.wustl.edu	37	22	37333924	37333924	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000395.2	+1	reviewed	p.P692T	0.003	56	0%	55	38.2%	1	0%	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	NULL
STS	412	genome.wustl.edu	37	X	7252143	7252143	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000351.4	+1	reviewed	p.Q458R	0.000	120	0%	113	12.4%	17	0%	benign(0)	tolerated(0.95)	-	HMMPfam_Sulfatase,superfamily_Alkaline_phosphatase_core
WWC3	55841	genome.wustl.edu	37	X	10096135	10096135	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015691.3	+1	validated	p.E738D	0.068	86	1.2%	86	32.6%	7	14.2%	benign(0.122)	tolerated(0.5)	neutral(0.020)	NULL
RAI2	10742	genome.wustl.edu	37	X	17819909	17819909	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021785.4	-1	reviewed	p.A74	0.071	79	0%	71	36.6%	37	91.8%	-	-	-	NULL
USP9X	8239	genome.wustl.edu	37	X	40990752	40990752	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039590.2	+1	reviewed	p.E95	1.000	618	0%	553	14.6%	22	0%	-	-	-	NULL
SLC9A7	84679	genome.wustl.edu	37	X	46466492	46466492	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032591.1	-1	reviewed	p.T691	0.731	148	0%	135	22.2%	5	0%	-	-	-	NULL
KCND1	3750	genome.wustl.edu	37	X	48826088	48826088	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004979.4	-1	reviewed	p.A197	0.867	19	0%	16	31.2%	0	-	-	-	-	superfamily_Voltage-gated potassium channels
SHROOM4	57477	genome.wustl.edu	37	X	50350731	50350731	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020717.3	-1	reviewed	p.E1137	0.000	39	2.6%	48	37.5%	1	0%	-	-	-	NULL
ENSG00000245461	0	genome.wustl.edu	37	X	51488621	51488621	+	RNA	SNP	G	G	C	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000502175	-1	novel	NULL	0.969	237	0%	211	14.7%	0	-	-	-	-	-
HUWE1	10075	genome.wustl.edu	37	X	53571562	53571562	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031407.4	-1	reviewed	p.T3737M	1.000	119	0%	161	39.8%	115	0%	unknown(0)	tolerated(0.12)	-	NULL
PAGE2	203569	genome.wustl.edu	37	X	55117771	55117771	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207339.2	+1	provisional	p.D67G	0.000	674	0.1%	593	40%	0	-	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	HMMPfam_GAGE
MAGEH1	28986	genome.wustl.edu	37	X	55479358	55479358	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014061.3	+1	reviewed	p.R184H	0.010	122	0%	164	22%	1	0%	benign(0.184)	tolerated(0.61)	neutral(0.021)	NULL
DLG3	1741	genome.wustl.edu	37	X	69669661	69669661	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021120.3	+1	reviewed	p.P219S	1.000	59	0%	61	41%	0	-	benign(0)	tolerated(0.06)	neutral(0.323)	superfamily_PDZ domain-like
ERCC6L	54821	genome.wustl.edu	37	X	71425281	71425281	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017669.2	-1	validated	p.E1112	0.211	177	0%	123	39%	8	100%	-	-	-	NULL
MAGEE2	139599	genome.wustl.edu	37	X	75004572	75004572	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138703.4	-1	validated	p.T105	0.000	52	0%	51	17.6%	0	-	-	-	-	HMMPfam_MAGE
MIR1911	100302222	genome.wustl.edu	37	X	113997817	113997817	+	RNA	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000410783	+1	known	NULL	0.994	153	0%	115	41.7%	0	-	-	-	-	-
PLS3	5358	genome.wustl.edu	37	X	114871257	114871257	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136025.3	+1	reviewed	p.W286*	1.000	266	0%	239	18%	16	6.2%	-	-	-	HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain
KIAA1210	57481	genome.wustl.edu	37	X	118223296	118223296	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020721.1	-1	validated	p.A633T	0.000	366	0%	353	25.5%	0	-	probably_damaging(0.972)	tolerated(0.18)	deleterious(0.470)	NULL
STAG2	10735	genome.wustl.edu	37	X	123217338	123217338	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042749.1	+1	validated	p.A998T	1.000	329	0%	250	16.4%	38	0%	benign(0.059)	tolerated(0.14)	neutral(0.254)	superfamily_ARM-type_fold
MTMR1	8776	genome.wustl.edu	37	X	149898617	149898617	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003828.2	+1	reviewed	p.E190K	1.000	374	0%	298	42.6%	7	100%	benign(0.422)	tolerated(0.5)	neutral(0.147)	superfamily_PH domain-like
ATP2B3	492	genome.wustl.edu	37	X	152845730	152845730	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001344.2	+1	reviewed	p.L1213F	0.977	76	0%	85	24.7%	0	-	possibly_damaging(0.952)	tolerated(0.11)	deleterious(0.667)	NULL
SLC6A8	6535	genome.wustl.edu	37	X	152959562	152959562	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000328897	+1	known	p.R452Q	0.000	70	0%	45	40%	0	-	benign(0.162)	deleterious(0)	neutral(0.459)	HMMPfam_SNF
ARHGAP4	393	genome.wustl.edu	37	X	153176393	153176393	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11J-01A-11D-A122-09	TCGA-B5-A11J-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001666.4	-1	reviewed	p.R555H	0.268	33	3%	37	32.4%	7	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RhoGAP,HMMSmart_RhoGAP,superfamily_Rho_GAP
