Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU
AFF3	3899	genome.wustl.edu	37	2	100210074	100210074	+	Silent	SNP	G	G	C	rs1047281	byCluster;byFrequency;by1000genomes	TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	100210074	100210074	G	C	SNP	AFF3	NM_001025108	human	genbank	57_37b	-1	reviewed	silent	c.2124	p.S708	0.052	HMMPfam_AF-4	HMMPfam_AF-4	-	
ANGEL1	23357	genome.wustl.edu	37	14	77275630	77275630	+	Missense_Mutation	SNP	C	C	A	rs34270005	byCluster;byFrequency;by1000genomes	TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	77275630	77275630	C	A	SNP	ANGEL1	NM_015305	human	genbank	57_37b	-1	validated	missense	c.421	p.G141W	0.028	NULL	HMMPfam_Exo_endo_phos,superfamily_Exo_endo_phos	-	
ANKH	56172	genome.wustl.edu	37	5	14716838	14716838	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	14716838	14716838	A	T	SNP	ANKH	NM_054027	human	genbank	57_37b	-1	reviewed	missense	c.1118	p.I373N	1.000	NULL	HMMPfam_ANKH	-	no_errors
ATAD5	79915	genome.wustl.edu	37	17	29220890	29220890	+	Silent	SNP	T	T	C	novel	unknown	TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	29220890	29220890	T	C	SNP	ATAD5	NM_024857	human	genbank	57_37b	+1	provisional	silent	c.5019	p.G1673	1.000	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA	-	no_errors
C14orf73	91828	genome.wustl.edu	37	14	103566774	103566774	+	Missense_Mutation	SNP	C	C	T	rs61730322	byCluster;byFrequency;by1000genomes	TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	103566774	103566774	C	T	SNP	C14orf73	NM_001077594	human	genbank	57_37b	+1	validated	missense	c.218	p.T73M	0.000	NULL	HMMPfam_Sec6	-	
C2CD4C	126567	genome.wustl.edu	37	19	408200	408200	+	Silent	SNP	G	G	C	rs7252178	byCluster;by1000genomes	TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	408200	408200	G	C	SNP	C2CD4C	NM_001136263	human	genbank	57_37b	-1	validated	silent	c.162	p.P54	0.916	NULL	superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2	-	
CAPN11	11131	genome.wustl.edu	37	6	44150736	44150736	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	44150736	44150736	G	T	SNP	CAPN11	NM_007058	human	genbank	57_37b	+1	reviewed	missense	c.1997	p.R666L	0.995	superfamily_SSF47473,HMMSmart_EFh,HMMPfam_efhand	PatternScan_THIOL_PROTEASE_HIS,PatternScan_THIOL_PROTEASE_ASN,superfamily_SSF54001,HMMSmart_CysPc,HMMPfam_Peptidase_C2,PatternScan_THIOL_PROTEASE_CYS,HMMPfam_Calpain_III,HMMSmart_calpain_III,superfamily_Peptidase_C2,superfamily_SSF47473,HMMSmart_EFh,HMMPfam_efhand,PatternScan_EF_HAND_1	-	no_errors
CCR2	1231	genome.wustl.edu	37	3	46399915	46399915	+	Silent	SNP	C	C	T	novel	unknown	TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	46399915	46399915	C	T	SNP	CCR2	NM_001123041	human	genbank	57_37b	+1	validated	silent	c.897	p.C299	1.000	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
CD1D	912	genome.wustl.edu	37	1	158150918	158150918	+	Silent	SNP	C	C	T	novel	unknown	TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	158150918	158150918	C	T	SNP	CD1D	NM_001766	human	genbank	57_37b	+1	reviewed	silent	c.27	p.L9	0.003	NULL	HMMPfam_MHC_I,superfamily_MHC_I/II-like_Ag-recog,superfamily_SSF48726,HMMPfam_C1-set,HMMSmart_IGc1	-	no_errors
CHAF1A	10036	genome.wustl.edu	37	19	4428843	4428843	+	Silent	SNP	C	C	T	novel	unknown	TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	4428843	4428843	C	T	SNP	CHAF1A	NM_005483	human	genbank	57_37b	+1	validated	silent	c.1560	p.S520	0.103	NULL	NULL	-	no_errors
CHTF18	63922	genome.wustl.edu	37	16	840378	840378	+	Missense_Mutation	SNP	A	A	G	rs3765263	byCluster;byFrequency;by1000genomes	TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	840378	840378	A	G	SNP	CHTF18	NM_022092	human	genbank	57_37b	+1	validated	missense	c.731	p.K244R	0.106	superfamily_P-loop containing nucleoside triphosphate hydrolases	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA	-	
COL6A3	1293	genome.wustl.edu	37	2	238283605	238283605	+	Silent	SNP	G	G	A	rs12622093	byCluster;byFrequency;byHapMap;by1000genomes	TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	238283605	238283605	G	A	SNP	COL6A3	NM_004369	human	genbank	57_37b	-1	reviewed	silent	c.3129	p.G1043	0.960	superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA	HMMSmart_SM00327,superfamily_vWA-like,HMMPfam_VWA,HMMPfam_Collagen,superfamily_Fibronectin type III,superfamily_BPTI-like,HMMSmart_SM00131,HMMPfam_Kunitz_BPTI,PatternScan_BPTI_KUNITZ_1	-	
CTU2	348180	genome.wustl.edu	37	16	88780090	88780090	+	Silent	SNP	G	G	A	rs2290904	byCluster;byFrequency;by1000genomes	TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	88780090	88780090	G	A	SNP	CTU2	NM_001012759	human	genbank	57_37b	+1	validated	silent	c.909	p.V303	0.989	superfamily_Adenine nucleotide alpha hydrolases-like,HMMPfam_DUF2392	superfamily_Adenine nucleotide alpha hydrolases-like,HMMPfam_DUF2392	-	
DACT2	168002	genome.wustl.edu	37	6	168708751	168708751	+	Silent	SNP	A	A	G	rs10945499	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	168708751	168708751	A	G	SNP	DACT2	NM_214462	human	genbank	57_37b	-1	validated	silent	c.1686	p.S562	0.653	NULL	NULL	-	
DENND3	22898	genome.wustl.edu	37	8	142202779	142202779	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	142202779	142202779	G	A	SNP	DENND3	ENST00000398933	human	ensembl	57_37b	+1	known	missense	c.563	p.R188H	0.000	NULL	superfamily_WD40_like,HMMSmart_WD40,PatternScan_WD_REPEATS_1	-	no_errors
DHX37	57647	genome.wustl.edu	37	12	125438712	125438712	+	Silent	SNP	C	C	A	rs11829165	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	125438712	125438712	C	A	SNP	DHX37	NM_032656	human	genbank	57_37b	-1	reviewed	silent	c.2499	p.R833	0.990	HMMPfam_HA2	PatternScan_DEAH_ATP_HELICASE,HMMSmart_DEXDc,superfamily_SSF52540,HMMSmart_HELICc,HMMPfam_Helicase_C,HMMPfam_HA2,HMMPfam_DUF1605	-	
DLK1	8788	genome.wustl.edu	37	14	101200645	101200645	+	Silent	SNP	T	T	C	rs1802710	byCluster;byFrequency;byHapMap;by1000genomes	TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	101200645	101200645	T	C	SNP	DLK1	NM_003836	human	genbank	57_37b	+1	reviewed	silent	c.564	p.I188	0.998	HMMSmart_SM00179,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_ASX_HYDROXYL	HMMSmart_SM00181,HMMPfam_EGF_2,superfamily_Concanavalin A-like lectins/glucanases,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_EGF/Laminin,HMMSmart_SM00179,HMMPfam_EGF,PatternScan_ASX_HYDROXYL	-	
DOCK6	57572	genome.wustl.edu	37	19	11347544	11347544	+	Silent	SNP	C	C	T	rs113585695	byCluster;by1000genomes	TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	11347544	11347544	C	T	SNP	DOCK6	NM_020812	human	genbank	57_37b	-1	validated	silent	c.2085	p.P695	0.994	NULL	HMMPfam_Ded_cyto	-	
ENSG00000213974	0	genome.wustl.edu	37	19	22785134	22785134	+	Silent	SNP	T	T	C	rs11670207	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	22785134	22785134	T	C	SNP	ENSG00000213974	ENST00000397112	human	ensembl	57_37b	+1	known	silent	c.78	p.D26	0.012	NULL	NULL	-	
ENSG00000245285	0	genome.wustl.edu	37	2	96809543	96809543	+	RNA	SNP	C	C	G	novel	unknown	TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	96809543	96809543	C	G	SNP	ENSG00000245285	ENST00000500772	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.576	-	-	-	no_errors
ENSG00000247773	0	genome.wustl.edu	37	22	24384070	24384070	+	RNA	SNP	C	C	A	novel	unknown	TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	24384070	24384070	C	A	SNP	ENSG00000247773	ENST00000501420	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.073	-	-	-	no_errors
FSTL5	56884	genome.wustl.edu	37	4	162577518	162577518	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	162577518	162577518	T	C	SNP	FSTL5	NM_020116	human	genbank	57_37b	-1	validated	missense	c.856	p.N286D	0.978	superfamily_SSF48726,HMMSmart_IGc2,HMMPfam_ig	PatternScan_KAZAL,superfamily_SSF100895,HMMSmart_KAZAL,HMMPfam_Kazal_1,HMMPfam_efhand,superfamily_SSF47473,PatternScan_EF_HAND_1,superfamily_SSF48726,HMMSmart_IGc2,HMMPfam_ig,HMMPfam_I-set,superfamily_Amine_DH_B_like	-	no_errors
GATA3	2625	genome.wustl.edu	37	10	8111433	8111434	+	Splice_Site	DEL	CA	CA	-	novel	unknown	TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	CA	CA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	8111433	8111434	CA	-	DEL	GATA3	NM_001002295	human	genbank	57_37b	+1	reviewed	splice_site_del	c.925-3_925-2	e4-2	1.000:1.000	-	-	(deletion:intron[8106102,8111435])	no_errors
GRN	2896	genome.wustl.edu	37	17	42427892	42427892	+	Missense_Mutation	SNP	C	C	T	rs63750479	unknown	TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	42427892	42427892	C	T	SNP	GRN	NM_002087	human	genbank	57_37b	+1	reviewed	missense	c.545	p.T182M	0.000	NULL	superfamily_Granulin repeat,HMMSmart_SM00277,HMMPfam_Granulin,PatternScan_GRANULINS,PatternScan_PA2_HIS	-	
HOXA7	3204	genome.wustl.edu	37	7	27195857	27195857	+	Missense_Mutation	SNP	T	T	C	rs35510017	byCluster;by1000genomes	TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	27195857	27195857	T	C	SNP	HOXA7	NM_006896	human	genbank	57_37b	-1	reviewed	missense	c.308	p.K103R	1.000	NULL	superfamily_Homeodomain_like,PatternScan_ANTENNAPEDIA,HMMSmart_HOX,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	-	
IKBKE	9641	genome.wustl.edu	37	1	206648210	206648210	+	Silent	SNP	C	C	T	novel	unknown	TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	206648210	206648210	C	T	SNP	IKBKE	NM_014002	human	genbank	57_37b	+1	validated	silent	c.231	p.G77	0.995	HMMPfam_Pkinase,superfamily_Kinase_like	PatternScan_PROTEIN_KINASE_ST,HMMPfam_Pkinase,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP	-	no_errors
KCTD10	83892	genome.wustl.edu	37	12	109895450	109895450	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	109895450	109895450	T	G	SNP	KCTD10	NM_031954	human	genbank	57_37b	-1	provisional	missense	c.512	p.K171T	1.000	NULL	superfamily_POZ domain,HMMSmart_SM00225,HMMPfam_K_tetra	-	no_errors
LOC100289883	0	genome.wustl.edu	37	16	778024	778024	+	Missense_Mutation	SNP	T	T	C	rs1406814	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	778024	778024	T	C	SNP	LOC100289883	XM_002347650	human	genbank	57_37b	-1	model	missense	c.67	p.M23V	0.996	NULL	NULL	-	
LOC388428	388428	genome.wustl.edu	37	17	79139473	79139473	+	RNA	SNP	C	C	G	rs2659034	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	79139473	79139473	C	G	SNP	LOC388428	NR_027255	human	genbank	57_37b	+1	validated	rna	NULL	NULL	0.041	-	-	-	
LOC440300	440300	genome.wustl.edu	37	15	84860763	84860763	+	RNA	SNP	T	T	C	rs77469967	by1000genomes	TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	84860763	84860763	T	C	SNP	LOC440300	XR_078504	human	genbank	57_37b	+1	model	rna	NULL	NULL	0.034	-	-	-	
LOC728802	728802	genome.wustl.edu	37	1	907816	907816	+	Silent	SNP	A	A	G	rs111795407	by1000genomes	TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	907816	907816	A	G	SNP	LOC728802	XM_001716818	human	genbank	57_37b	+1	model	silent	c.591	p.Q197	0.000	NULL	NULL	-	
LRBA	987	genome.wustl.edu	37	4	151682938	151682938	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	151682938	151682938	C	-	DEL	LRBA	NM_006726	human	genbank	57_37b	-1	validated	frame_shift_del	c.5642	p.G1881fs	1.000	superfamily_ARM repeat,HMMPfam_DUF1088	superfamily_ARM repeat,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_DUF1088,superfamily_PH domain-like,superfamily_BEACH domain,HMMPfam_Beach,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40	(deletion:cds_exon[151682935,151682999])	no_errors
MCM4	4173	genome.wustl.edu	37	8	48882407	48882407	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	48882407	48882407	G	A	SNP	MCM4	NM_005914	human	genbank	57_37b	+1	reviewed	silent	c.1224	p.V408	0.995	superfamily_Nucleic_acid_OB,HMMSmart_MCM	superfamily_Nucleic_acid_OB,HMMSmart_MCM,HMMPfam_MCM,superfamily_SSF52540,HMMSmart_AAA,PatternScan_MCM_1	-	no_errors
MLNR	2862	genome.wustl.edu	37	13	49794650	49794650	+	Silent	SNP	C	C	A	rs9568169	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	49794650	49794650	C	A	SNP	MLNR	NM_001507	human	genbank	57_37b	+1	provisional	silent	c.177	p.T59	0.951	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	
MYBBP1A	10514	genome.wustl.edu	37	17	4449150	4449150	+	Missense_Mutation	SNP	T	T	C	rs899441	byCluster;by1000genomes	TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	4449150	4449150	T	C	SNP	MYBBP1A	NM_001105538	human	genbank	57_37b	-1	validated	missense	c.1912	p.K638E	0.295	superfamily_ARM-type_fold,HMMPfam_DNA_pol_phi	superfamily_ARM-type_fold,HMMPfam_DNA_pol_phi	-	
NKAIN4	128414	genome.wustl.edu	37	20	61878950	61878950	+	Missense_Mutation	SNP	A	A	C	rs872808	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	61878950	61878950	A	C	SNP	NKAIN4	NM_152864	human	genbank	57_37b	-1	validated	missense	c.451	p.C151G	0.000	HMMPfam_NKAIN	HMMPfam_NKAIN	-	
OR51V1	283111	genome.wustl.edu	37	11	5221911	5221911	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	5221911	5221911	A	G	SNP	OR51V1	NM_001004760	human	genbank	57_37b	-1	validated	missense	c.20	p.M7T	0.000	NULL	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
OSBPL5	114879	genome.wustl.edu	37	11	3122915	3122915	+	Silent	SNP	C	C	T	rs61736126	by1000genomes	TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	3122915	3122915	C	T	SNP	OSBPL5	NM_020896	human	genbank	57_37b	-1	reviewed	silent	c.1440	p.P480	0.314	HMMPfam_Oxysterol_BP,PatternScan_OSBP	superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,HMMPfam_Oxysterol_BP,PatternScan_OSBP	-	
PAOX	196743	genome.wustl.edu	37	10	135204950	135204950	+	Missense_Mutation	SNP	C	C	G	rs1046175	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	135204950	135204950	C	G	SNP	PAOX	NM_207128	human	genbank	57_37b	+1	validated	missense	c.1369	p.Q457E	0.001	NULL	superfamily_FAD/NAD(P)-binding domain,HMMPfam_Amino_oxidase,superfamily_FAD-linked reductases C-terminal domain	-	
PDE9A	5152	genome.wustl.edu	37	21	44106372	44106372	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	44106372	44106372	G	A	SNP	PDE9A	NM_002606	human	genbank	57_37b	+1	reviewed	missense	c.140	p.R47Q	1.000	NULL	superfamily_HD-domain/PDEase-like,HMMSmart_SM00471,HMMPfam_PDEase_I,PatternScan_PDEASE_I	-	no_errors
PGAP2	27315	genome.wustl.edu	37	11	3846853	3846855	+	RNA	DEL	CTC	CTC	-	novel	unknown	TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	CTC	CTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	3846853	3846855	CTC	-	DEL	PGAP2	NR_027014	human	genbank	57_37b	+1	validated	rna	NULL	NULL	0.231:0.226:0.001	-	-	(deletion:rna[3846558,3847582])	no_errors
PLD2	5338	genome.wustl.edu	37	17	4725937	4725937	+	Silent	SNP	C	C	T	rs114652175	by1000genomes	TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	4725937	4725937	C	T	SNP	PLD2	NM_002663	human	genbank	57_37b	+1	validated	silent	c.2580	p.I860	1.000	NULL	superfamily_PX domain,HMMPfam_PX,HMMSmart_SM00312,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_Phospholipase D/nuclease,HMMPfam_PLDc,HMMSmart_SM00155	-	
RABEPK	10244	genome.wustl.edu	37	9	127994885	127994885	+	Silent	SNP	A	A	G	novel	unknown	TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	127994885	127994885	A	G	SNP	RABEPK	NM_005833	human	genbank	57_37b	+1	provisional	silent	c.687	p.K229	0.887	superfamily_Galactose oxidase central domain,HMMPfam_Kelch_1	superfamily_Galactose oxidase central domain,HMMPfam_Kelch_2,HMMPfam_Kelch_1	-	no_errors
SCNN1D	6339	genome.wustl.edu	37	1	1221001	1221001	+	Missense_Mutation	SNP	A	A	G	rs72896210	byCluster;byFrequency;by1000genomes	TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	1221001	1221001	A	G	SNP	SCNN1D	NM_001130413	human	genbank	57_37b	+1	validated	missense	c.221	p.Q74R	0.005	NULL	HMMPfam_ASC,PatternScan_ASC	-	
SGEF	26084	genome.wustl.edu	37	3	153839959	153839959	+	Missense_Mutation	SNP	C	C	T	rs59508481	byCluster;byFrequency;by1000genomes	TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	153839959	153839959	C	T	SNP	SGEF	NM_015595	human	genbank	57_37b	+1	validated	missense	c.178	p.L60F	0.001	NULL	superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_1	-	
TANC2	26115	genome.wustl.edu	37	17	61489359	61489359	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	61489359	61489359	G	A	SNP	TANC2	NM_025185	human	genbank	57_37b	+1	validated	missense	c.3544	p.V1182I	1.000	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00248,superfamily_Ankyrin repeat,HMMPfam_Ank,HMMSmart_SM00028,superfamily_TPR-like,HMMPfam_TPR_1	-	no_errors
TECPR1	25851	genome.wustl.edu	37	7	97852317	97852317	+	Silent	SNP	C	C	T	rs79438349	byCluster;byFrequency;by1000genomes	TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	97852317	97852317	C	T	SNP	TECPR1	NM_015395	human	genbank	57_37b	-1	provisional	silent	c.2913	p.S971	0.004	HMMPfam_Hyd_WA	HMMSmart_SM00706,HMMSmart_SM00693,HMMSmart_SM00694,HMMPfam_Hyd_WA,superfamily_PH domain-like	-	
WDR74	54663	genome.wustl.edu	37	11	62603453	62603453	+	Nonsense_Mutation	SNP	T	T	A	novel	unknown	TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	62603453	62603453	T	A	SNP	WDR74	NM_018093	human	genbank	57_37b	-1	validated	nonsense	c.349	p.K117*	0.358	superfamily_WD40 repeat-like	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40	-	no_errors
ZAN	7455	genome.wustl.edu	37	7	100361819	100361819	+	Missense_Mutation	SNP	C	C	T	rs74437616	byCluster;byFrequency;by1000genomes	TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	100361819	100361819	C	T	SNP	ZAN	NM_003386	human	genbank	57_37b	+1	reviewed	missense	c.4267	p.P1423S	1.000	HMMPfam_C8,superfamily_Serine proterase inhibitors	HMMSmart_SM00137,HMMPfam_MAM,PatternScan_MAM_1,superfamily_Serine proterase inhibitors,HMMPfam_TIL,PatternScan_EGF_2,HMMSmart_SM00215,HMMSmart_SM00216,HMMPfam_VWD,HMMPfam_C8	-	
ZDHHC3	51304	genome.wustl.edu	37	3	44970893	44970893	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	44970893	44970893	G	T	SNP	ZDHHC3	NM_001135180	human	genbank	57_37b	-1	validated	missense	c.646	p.L216I	1.000	NULL	HMMPfam_zf-DHHC	-	no_errors
