Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	isArtifactMode	oxoGCut
NPHP4	261734	broad.mit.edu	37	1	5969225	5969225	+	Missense_Mutation	SNP	G	C	C			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr1:5969225G>C	uc001alq.1	-	12	1756	c.1490C>G	c.(1489-1491)CCT>CGT	p.P497R	NPHP4_uc001als.1_RNA|NPHP4_uc009vlt.1_Intron|NPHP4_uc001alt.1_Intron	NM_015102	NP_055917	O75161	NPHP4_HUMAN	nephroretinin	497					actin cytoskeleton organization|cell-cell adhesion|signal transduction|visual behavior	cell-cell junction|centrosome|cilium|microtubule basal body	protein binding|structural molecule activity			pancreas(1)	1	Ovarian(185;0.0634)	all_cancers(23;7.53e-41)|all_epithelial(116;3.96e-23)|all_lung(118;5.12e-09)|all_hematologic(16;5.45e-07)|Lung NSC(185;5.49e-07)|all_neural(13;3.21e-06)|Acute lymphoblastic leukemia(12;3.44e-05)|Breast(487;0.000601)|Renal(390;0.0007)|Colorectal(325;0.00113)|Hepatocellular(190;0.00213)|Glioma(11;0.00223)|Myeloproliferative disorder(586;0.0256)|Ovarian(437;0.04)|Lung SC(97;0.128)|Medulloblastoma(700;0.213)		Epithelial(90;1.69e-36)|GBM - Glioblastoma multiforme(13;5.07e-29)|OV - Ovarian serous cystadenocarcinoma(86;1.05e-19)|Colorectal(212;4.54e-07)|COAD - Colon adenocarcinoma(227;3.14e-05)|Kidney(185;0.00012)|BRCA - Breast invasive adenocarcinoma(365;0.00102)|KIRC - Kidney renal clear cell carcinoma(229;0.00179)|STAD - Stomach adenocarcinoma(132;0.00472)|READ - Rectum adenocarcinoma(331;0.0649)		TGGTCCCACAGGTGAGTTCTG	0.602													4	4					0	0	0	0
MTOR	2475	broad.mit.edu	37	1	11294218	11294218	+	Silent	SNP	G	A	A	rs148505575		TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr1:11294218G>A	uc001asd.2	-	14	2434	c.2313C>T	c.(2311-2313)TAC>TAT	p.Y771Y		NM_004958	NP_004949	P42345	MTOR_HUMAN	FK506 binding protein 12-rapamycin associated	771					cell growth|cellular response to hypoxia|insulin receptor signaling pathway|nerve growth factor receptor signaling pathway|peptidyl-serine phosphorylation|phosphatidylinositol-mediated signaling|protein autophosphorylation|protein catabolic process|response to amino acid stimulus|response to nutrient|T cell costimulation|TOR signaling cascade	endoplasmic reticulum membrane|Golgi membrane|lysosome|mitochondrial outer membrane|phosphatidylinositol 3-kinase complex|PML body|TORC1 complex|TORC2 complex	ATP binding|phosphoprotein binding|protein serine/threonine kinase activity			central_nervous_system(7)|lung(6)|ovary(6)|skin(3)|kidney(3)|large_intestine(2)|breast(2)	29						TAGGCTCCATGTAGGGGCGGA	0.542													49	30					0	0	0	0
PRAMEF10	343071	broad.mit.edu	37	1	12952809	12952809	+	Missense_Mutation	SNP	C	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr1:12952809C>A	uc001auo.2	-	4	1436	c.1363G>T	c.(1363-1365)GTC>TTC	p.V455F		NM_001039361	NP_001034450	O60809	PRA10_HUMAN	PRAME family member 10	455											0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.00224)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		GGGCAAGGGACGGGACCAAAG	0.537													32	28					1.07637e-12	1.25165e-12	1	0
CLCNKA	1187	broad.mit.edu	37	1	16354523	16354523	+	Missense_Mutation	SNP	G	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr1:16354523G>T	uc001axu.2	+	10	957	c.877G>T	c.(877-879)GGC>TGC	p.G293C	CLCNKA_uc001axt.2_RNA|CLCNKA_uc001axv.2_Missense_Mutation_p.G293C|CLCNKA_uc010obw.1_Missense_Mutation_p.G250C|CLCNKB_uc001axw.3_Intron|CLCNKA_uc010obx.1_5'Flank|CLCNKA_uc010oby.1_5'Flank	NM_004070	NP_004061	P51800	CLCKA_HUMAN	chloride channel Ka isoform 1	293	Helical; (Potential).				excretion	chloride channel complex|integral to plasma membrane	voltage-gated chloride channel activity			ovary(1)	1		Colorectal(325;3.46e-05)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0221)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Colorectal(212;8.04e-08)|COAD - Colon adenocarcinoma(227;5.46e-06)|BRCA - Breast invasive adenocarcinoma(304;9.02e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(313;0.00655)|READ - Rectum adenocarcinoma(331;0.0649)	Niflumic Acid(DB04552)	TGGCATCTGCGGCGTCCTGAG	0.582													40	24					1.30916e-28	1.73756e-28	1	0
CSMD2	114784	broad.mit.edu	37	1	34066553	34066553	+	Missense_Mutation	SNP	C	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr1:34066553C>A	uc001bxn.1	-	45	6803	c.6774G>T	c.(6772-6774)AAG>AAT	p.K2258N	CSMD2_uc001bxm.1_Missense_Mutation_p.K2256N|CSMD2_uc001bxo.1_Missense_Mutation_p.K1129N	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	2258	Extracellular (Potential).|CUB 13.					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				GCACTGTTTTCTTGGCCATGC	0.547													69	71					4.09166e-32	5.51721e-32	1	0
CSMD2	114784	broad.mit.edu	37	1	34066577	34066577	+	Silent	SNP	G	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr1:34066577G>T	uc001bxn.1	-	45	6779	c.6750C>A	c.(6748-6750)GGC>GGA	p.G2250G	CSMD2_uc001bxm.1_Silent_p.G2248G|CSMD2_uc001bxo.1_Silent_p.G1121G	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	2250	Extracellular (Potential).|CUB 13.					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				GGGTGAAGACGCCGAGCCGTG	0.582													56	60					7.10663e-31	9.53191e-31	1	0
SLC6A9	6536	broad.mit.edu	37	1	44474158	44474158	+	Missense_Mutation	SNP	T	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr1:44474158T>A	uc001cll.2	-	5	868	c.676A>T	c.(676-678)ACG>TCG	p.T226S	SLC6A9_uc009vxe.2_Missense_Mutation_p.T82S|SLC6A9_uc010okm.1_Missense_Mutation_p.T153S|SLC6A9_uc001clm.2_Missense_Mutation_p.T172S|SLC6A9_uc009vxd.2_RNA|SLC6A9_uc010okn.1_Missense_Mutation_p.T157S|SLC6A9_uc001cln.2_Missense_Mutation_p.T153S|SLC6A9_uc010oko.1_Missense_Mutation_p.T42S|SLC6A9_uc010okp.1_RNA	NM_201649	NP_964012	P48067	SC6A9_HUMAN	solute carrier family 6 member 9 isoform 2	226	Extracellular (Potential).					integral to plasma membrane|membrane fraction	glycine:sodium symporter activity|neurotransmitter:sodium symporter activity				0	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0511)			Glycine(DB00145)	CAGTCATGCGTGTTCCAGGGG	0.592													54	88					0	0	0	0
RNF220	55182	broad.mit.edu	37	1	45110420	45110420	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr1:45110420G>A	uc001clv.1	+	9	1537	c.1177G>A	c.(1177-1179)GAC>AAC	p.D393N	RNF220_uc001clw.1_Missense_Mutation_p.D393N|RNF220_uc010okx.1_Missense_Mutation_p.D154N|RNF220_uc010oky.1_Missense_Mutation_p.D180N|RNF220_uc010okz.1_Missense_Mutation_p.D135N|RNF220_uc001clx.1_Missense_Mutation_p.D109N|RNF220_uc001cly.1_Missense_Mutation_p.D72N|RNF220_uc001clz.1_Missense_Mutation_p.D72N|RNF220_uc001cma.1_Missense_Mutation_p.D72N|TMEM53_uc001cmb.1_Intron	NM_018150	NP_060620	Q5VTB9	RN220_HUMAN	ring finger protein 220	393					protein autoubiquitination	cytoplasm	ubiquitin-protein ligase activity|zinc ion binding			ovary(2)	2						CAGTGATGCTGACTTGGATGT	0.592													29	74					0	0	0	0
CYP4B1	1580	broad.mit.edu	37	1	47282727	47282727	+	Silent	SNP	C	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr1:47282727C>T	uc001cqm.3	+	9	1162	c.1078C>T	c.(1078-1080)CTG>TTG	p.L360L	CYP4B1_uc001cqn.3_Silent_p.L361L|CYP4B1_uc009vym.2_Silent_p.L346L|CYP4B1_uc010omk.1_Silent_p.L197L	NM_000779	NP_000770	P13584	CP4B1_HUMAN	cytochrome P450, family 4, subfamily B,	360					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(1)|skin(1)	2	Acute lymphoblastic leukemia(166;0.155)					CAGGGATGATCTGGGCAAAAT	0.547													48	99					0	0	0	0
CYP4X1	260293	broad.mit.edu	37	1	47501491	47501491	+	Missense_Mutation	SNP	A	G	G			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr1:47501491A>G	uc001cqt.2	+	5	756	c.506A>G	c.(505-507)AAG>AGG	p.K169R	CYP4X1_uc001cqr.2_Missense_Mutation_p.K168R|CYP4X1_uc001cqs.2_Missense_Mutation_p.K104R	NM_178033	NP_828847	Q8N118	CP4X1_HUMAN	cytochrome P450, family 4, subfamily X,	169						endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding			ovary(1)|skin(1)	2						AAGTGGGAGAAGATTTGCAGC	0.483													20	43					0	0	0	0
MYSM1	114803	broad.mit.edu	37	1	59165708	59165708	+	Missense_Mutation	SNP	G	A	A	rs12402204		TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr1:59165708G>A	uc009wab.1	-	1	40	c.17C>T	c.(16-18)GCG>GTG	p.A6V	MYSM1_uc001czd.2_Missense_Mutation_p.A6V	NM_001085487	NP_001078956	Q5VVJ2	MYSM1_HUMAN	Myb-like, SWIRM and MPN domains 1	6					histone deubiquitination|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromatin remodeling complex	DNA binding|histone binding|metal ion binding|metallopeptidase activity|transcription coactivator activity|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			skin(1)	1	all_cancers(7;9.36e-06)					ATCCACATCCGCCTCTTCAGC	0.682													31	65					0	0	0	0
C1orf87	127795	broad.mit.edu	37	1	60503779	60503779	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr1:60503779C>T	uc001czs.1	-	6	840	c.748G>A	c.(748-750)GTG>ATG	p.V250M		NM_152377	NP_689590	Q8N0U7	CA087_HUMAN	hypothetical protein LOC127795	250							calcium ion binding			ovary(1)|breast(1)	2						TCATAATTCACCTGAAAATTA	0.333													14	17					0	0	0	0
C1orf87	127795	broad.mit.edu	37	1	60505791	60505791	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr1:60505791C>T	uc001czs.1	-	5	637	c.545G>A	c.(544-546)AGA>AAA	p.R182K		NM_152377	NP_689590	Q8N0U7	CA087_HUMAN	hypothetical protein LOC127795	182							calcium ion binding			ovary(1)|breast(1)	2						GAGTTCTCTTCTGACCAGGGC	0.423													30	37					0	0	0	0
USP1	7398	broad.mit.edu	37	1	62910842	62910842	+	Missense_Mutation	SNP	T	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr1:62910842T>A	uc001daj.1	+	6	1319	c.991T>A	c.(991-993)TCA>ACA	p.S331T	USP1_uc001dak.1_Missense_Mutation_p.S331T|USP1_uc001dal.1_Missense_Mutation_p.S331T	NM_001017415	NP_001017415	O94782	UBP1_HUMAN	ubiquitin specific protease 1	331					DNA repair|monoubiquitinated protein deubiquitination|regulation of DNA repair|response to UV|ubiquitin-dependent protein catabolic process	nucleoplasm	cysteine-type endopeptidase activity|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(1)	1		all_neural(321;0.0281)		BRCA - Breast invasive adenocarcinoma(111;8.01e-05)|KIRC - Kidney renal clear cell carcinoma(1967;0.00245)|OV - Ovarian serous cystadenocarcinoma(397;0.0535)		TCCAAGACCCTCACAAAAGAA	0.323													13	26					0	0	0	0
LEPR	3953	broad.mit.edu	37	1	66062270	66062270	+	Silent	SNP	C	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr1:66062270C>A	uc001dci.2	+	7	1045	c.843C>A	c.(841-843)ATC>ATA	p.I281I	LEPR_uc001dcg.2_Silent_p.I281I|LEPR_uc001dch.2_Silent_p.I281I|LEPR_uc009waq.2_Intron|LEPR_uc001dcj.2_Silent_p.I281I|LEPR_uc001dck.2_Silent_p.I281I	NM_002303	NP_002294	P48357	LEPR_HUMAN	leptin receptor isoform 1	281	Extracellular (Potential).|Fibronectin type-III 1.				energy reserve metabolic process|multicellular organismal development	extracellular region|integral to membrane|plasma membrane	cytokine receptor activity			skin(1)	1				OV - Ovarian serous cystadenocarcinoma(397;0.00722)|KIRC - Kidney renal clear cell carcinoma(1967;0.094)		CAACAGTTATCAGAGAAGTAA	0.328													11	18					1.5842e-08	1.73851e-08	1	0
SLC44A5	204962	broad.mit.edu	37	1	75805305	75805305	+	Silent	SNP	C	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr1:75805305C>T	uc001dgu.2	-	4	207	c.63G>A	c.(61-63)AGG>AGA	p.R21R	SLC44A5_uc001dgt.2_Silent_p.R21R|SLC44A5_uc001dgs.2_5'UTR|SLC44A5_uc001dgr.2_5'UTR|SLC44A5_uc010oqz.1_Silent_p.R60R|SLC44A5_uc010ora.1_Silent_p.R15R|SLC44A5_uc010orb.1_5'UTR	NM_152697	NP_689910	Q8NCS7	CTL5_HUMAN	solute carrier family 44, member 5 isoform A	21	Cytoplasmic (Potential).					integral to membrane|plasma membrane	choline transmembrane transporter activity			ovary(2)|skin(2)	4						GGTCATATGTCCTTGGATCAC	0.328													129	233					0	0	0	0
COL24A1	255631	broad.mit.edu	37	1	86200453	86200453	+	Silent	SNP	T	C	C			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr1:86200453T>C	uc001dlj.2	-	59	5019	c.4977A>G	c.(4975-4977)AAA>AAG	p.K1659K	COL24A1_uc001dli.2_Silent_p.K774K|COL24A1_uc010osd.1_Silent_p.K959K|COL24A1_uc001dlk.2_RNA|COL24A1_uc010ose.1_RNA|COL24A1_uc010osf.1_RNA	NM_152890	NP_690850	Q17RW2	COOA1_HUMAN	collagen, type XXIV, alpha 1 precursor	1659	Fibrillar collagen NC1.				cell adhesion	collagen	extracellular matrix structural constituent			ovary(3)|central_nervous_system(1)|skin(1)	5				all cancers(265;0.0627)|Epithelial(280;0.0689)		CTGAAAGCACTTTAGGTTCAA	0.358													57	111					0	0	0	0
COL11A1	1301	broad.mit.edu	37	1	103381186	103381186	+	Splice_Site	SNP	C	G	G			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr1:103381186C>G	uc001dul.2	-	50	4134	c.3816_splice	c.e50+1	p.G1272_splice	COL11A1_uc001duk.2_Splice_Site_p.G468_splice|COL11A1_uc001dum.2_Splice_Site_p.G1284_splice|COL11A1_uc001dun.2_Splice_Site_p.G1233_splice|COL11A1_uc009weh.2_Splice_Site_p.G1156_splice	NM_001854	NP_001845	P12107	COBA1_HUMAN	alpha 1 type XI collagen isoform A						collagen fibril organization|detection of mechanical stimulus involved in sensory perception of sound|visual perception	collagen type XI	extracellular matrix binding|extracellular matrix structural constituent|protein binding, bridging			ovary(6)|breast(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	12		all_epithelial(167;2.52e-07)|all_lung(203;3.11e-05)|Lung NSC(277;6.61e-05)|Breast(1374;0.181)		Lung(183;0.186)|all cancers(265;0.242)|Epithelial(280;0.248)		ACAGTACTTACGCCTACACCT	0.388													31	39					0	0	0	0
NBPF9	400818	broad.mit.edu	37	1	144615283	144615283	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr1:144615283C>T	uc009wig.1	+	4	231	c.155C>T	c.(154-156)GCC>GTC	p.A52V	NBPF9_uc010oxn.1_Intron|NBPF9_uc010oxo.1_Intron|NBPF9_uc010oxr.1_Intron|NBPF9_uc010oxt.1_Intron|NBPF9_uc001ekg.1_Intron|NBPF9_uc001ekk.1_Intron|NBPF10_uc009wir.2_Intron|NBPF9_uc010oyd.1_Intron|NBPF9_uc010oye.1_5'UTR|NBPF9_uc001eli.3_RNA|NBPF9_uc010oyf.1_5'UTR|NBPF9_uc010oyg.1_Silent_p.G51G|NBPF9_uc009wii.1_5'UTR|NBPF9_uc009wif.1_RNA|C1orf152_uc001elf.3_5'Flank	NM_001037675	NP_001032764	Q3BBV1	NBPFK_HUMAN	hypothetical protein LOC400818	52						cytoplasm					0						GGCTTCCTGGCCAACCGACAG	0.448													10	29					0	0	0	0
PDE4DIP	9659	broad.mit.edu	37	1	144880744	144880744	+	Missense_Mutation	SNP	G	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr1:144880744G>T	uc001elw.3	-	26	4175	c.3884C>A	c.(3883-3885)CCT>CAT	p.P1295H	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|PDE4DIP_uc001elx.3_Missense_Mutation_p.P1251H|PDE4DIP_uc001elv.3_Missense_Mutation_p.P302H	NM_014644	NP_055459	Q5VU43	MYOME_HUMAN	phosphodiesterase 4D interacting protein isoform	1295					cellular protein complex assembly	centrosome|Golgi apparatus|myofibril|nucleus	enzyme binding			ovary(4)|haematopoietic_and_lymphoid_tissue(1)	5				Colorectal(2;0.0829)|COAD - Colon adenocarcinoma(2;0.126)		GCTCTTACCAGGACTGGTGGT	0.567			T	PDGFRB	MPD								158	275					1.4242e-99	2.05133e-99	1	0
PDE4DIP	9659	broad.mit.edu	37	1	144918863	144918863	+	Missense_Mutation	SNP	A	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr1:144918863A>T	uc001elw.3	-	10	1614	c.1323T>A	c.(1321-1323)CAT>CAA	p.H441Q	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|PDE4DIP_uc001elx.3_Missense_Mutation_p.H507Q|PDE4DIP_uc001emc.1_Missense_Mutation_p.H441Q|PDE4DIP_uc001emd.1_Missense_Mutation_p.H441Q|PDE4DIP_uc001emb.1_Missense_Mutation_p.H604Q|PDE4DIP_uc001eme.1_5'UTR|PDE4DIP_uc001emf.1_Missense_Mutation_p.H228Q	NM_014644	NP_055459	Q5VU43	MYOME_HUMAN	phosphodiesterase 4D interacting protein isoform	441	Potential.				cellular protein complex assembly	centrosome|Golgi apparatus|myofibril|nucleus	enzyme binding			ovary(4)|haematopoietic_and_lymphoid_tissue(1)	5				Colorectal(2;0.0829)|COAD - Colon adenocarcinoma(2;0.126)		GACTCAGACTATGGTTTAGGT	0.388			T	PDGFRB	MPD								139	595					0	0	0	0
FLG2	388698	broad.mit.edu	37	1	152324044	152324044	+	Missense_Mutation	SNP	T	C	C			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr1:152324044T>C	uc001ezw.3	-	3	6291	c.6218A>G	c.(6217-6219)CAT>CGT	p.H2073R	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	2073							calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TGTCTGTCCATGAGTAGTTCC	0.532													213	482					0	0	0	0
IQGAP3	128239	broad.mit.edu	37	1	156500967	156500967	+	Silent	SNP	C	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr1:156500967C>A	uc001fpf.2	-	33	4251	c.4176G>T	c.(4174-4176)TCG>TCT	p.S1392S		NM_178229	NP_839943	Q86VI3	IQGA3_HUMAN	IQ motif containing GTPase activating protein 3	1392					small GTPase mediated signal transduction	intracellular	calmodulin binding|Ras GTPase activator activity			ovary(5)|skin(1)	6	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					CTCTGGAAGCCGAGAGGGACA	0.582													121	74					2.30743e-64	3.28615e-64	1	0
APCS	325	broad.mit.edu	37	1	159558302	159558302	+	Missense_Mutation	SNP	A	G	G			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr1:159558302A>G	uc001ftv.2	+	2	572	c.476A>G	c.(475-477)TAT>TGT	p.Y159C		NM_001639	NP_001630	P02743	SAMP_HUMAN	serum amyloid P component precursor	159	Pentaxin.				acute-phase response|chaperone-mediated protein complex assembly|protein folding	extracellular space	metal ion binding|sugar binding|unfolded protein binding			ovary(1)|breast(1)	2	all_hematologic(112;0.0429)					CAGGATTCCTATGGGGGCAAG	0.498													29	12					0	0	0	0
DCAF6	55827	broad.mit.edu	37	1	168007626	168007626	+	Silent	SNP	C	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr1:168007626C>T	uc001gew.2	+	11	1638	c.1396C>T	c.(1396-1398)CTG>TTG	p.L466L	DCAF6_uc001gev.2_Silent_p.L486L|DCAF6_uc001gex.2_Silent_p.L543L|DCAF6_uc010plk.1_Silent_p.L512L|DCAF6_uc001gey.2_Silent_p.L339L	NM_001017977	NP_001017977	Q58WW2	DCAF6_HUMAN	IQ motif and WD repeats 1 isoform b	466					positive regulation of transcription from RNA polymerase II promoter	CUL4 RING ubiquitin ligase complex|nucleus	ligand-dependent nuclear receptor transcription coactivator activity			ovary(1)|central_nervous_system(1)|skin(1)	3						TAATGAAAAGCTGAGCCCCAA	0.323													18	37					0	0	0	0
C1orf114	57821	broad.mit.edu	37	1	169391453	169391453	+	Silent	SNP	C	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr1:169391453C>T	uc001gga.1	-	3	384	c.216G>A	c.(214-216)TTG>TTA	p.L72L	C1orf114_uc001gfz.1_Silent_p.L72L|C1orf114_uc009wvq.1_Silent_p.L72L|C1orf114_uc001ggb.2_Silent_p.L72L|C1orf114_uc001ggc.1_Silent_p.L72L	NM_021179	NP_067002	Q5TID7	CA114_HUMAN	hypothetical protein LOC57821	72											0	all_hematologic(923;0.208)					CCTCATCCTGCAAAGATTTGT	0.403													27	48					0	0	0	0
FAM5B	57795	broad.mit.edu	37	1	177226509	177226509	+	Missense_Mutation	SNP	G	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr1:177226509G>T	uc001glf.2	+	4	970	c.658G>T	c.(658-660)GGG>TGG	p.G220W	FAM5B_uc010pna.1_5'UTR|FAM5B_uc001glg.2_Missense_Mutation_p.G115W	NM_021165	NP_066988	Q9C0B6	FAM5B_HUMAN	family with sequence similarity 5, member B	220						extracellular region				skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6						GATAGCCACGGGGGCCATCAA	0.607													7	26					0.000274275	0.000281493	1	0
CACNA1E	777	broad.mit.edu	37	1	181767769	181767769	+	Silent	SNP	G	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr1:181767769G>A	uc001gow.2	+	47	6777	c.6612G>A	c.(6610-6612)GAG>GAA	p.E2204E	CACNA1E_uc009wxs.2_Silent_p.E2092E|CACNA1E_uc009wxt.2_Silent_p.E1473E	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	2247	Cytoplasmic (Potential).				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						GTGGTGAGGAGGAGACGCTCA	0.642													7	19					0	0	0	0
HMCN1	83872	broad.mit.edu	37	1	186010236	186010236	+	Missense_Mutation	SNP	A	C	C			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr1:186010236A>C	uc001grq.1	+	40	6501	c.6272A>C	c.(6271-6273)GAA>GCA	p.E2091A		NM_031935	NP_114141	Q96RW7	HMCN1_HUMAN	hemicentin 1 precursor	2091	Ig-like C2-type 18.				response to stimulus|visual perception	basement membrane	calcium ion binding			ovary(22)|skin(1)	23						GCTGCTGGAGAAAAGCAAAGG	0.438													24	79					0	0	0	0
PTGS2	5743	broad.mit.edu	37	1	186648537	186648537	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr1:186648537C>T	uc001gsb.2	-	2	223	c.86G>A	c.(85-87)CGA>CAA	p.R29Q	PTGS2_uc009wyo.2_5'UTR	NM_000963	NP_000954	P35354	PGH2_HUMAN	prostaglandin-endoperoxide synthase 2 precursor	29	EGF-like.				cellular component movement|cyclooxygenase pathway|hormone biosynthetic process|positive regulation of brown fat cell differentiation|positive regulation of cell migration involved in sprouting angiogenesis|positive regulation of fever generation|positive regulation of fibroblast growth factor production|positive regulation of nitric oxide biosynthetic process|positive regulation of platelet-derived growth factor production|positive regulation of prostaglandin biosynthetic process|positive regulation of transforming growth factor-beta production|positive regulation vascular endothelial growth factor production|regulation of blood pressure|response to oxidative stress|xenobiotic metabolic process	endoplasmic reticulum lumen|endoplasmic reticulum membrane|microsome|neuron projection|nucleus	enzyme binding|heme binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|peroxidase activity|prostaglandin-endoperoxide synthase activity			ovary(1)|central_nervous_system(1)	2					Acetaminophen(DB00316)|Aspirin(DB00945)|Balsalazide(DB01014)|Bromfenac(DB00963)|Carprofen(DB00821)|Celecoxib(DB00482)|Ciclopirox(DB01188)|Diclofenac(DB00586)|Diflunisal(DB00861)|Epoprostenol(DB01240)|Etodolac(DB00749)|Etoricoxib(DB01628)|Fenoprofen(DB00573)|Flurbiprofen(DB00712)|gamma-Homolinolenic acid(DB00154)|Ginseng(DB01404)|Ibuprofen(DB01050)|Icosapent(DB00159)|Indomethacin(DB00328)|Ketoprofen(DB01009)|Ketorolac(DB00465)|Lenalidomide(DB00480)|Lumiracoxib(DB01283)|Meclofenamic acid(DB00939)|Mefenamic acid(DB00784)|Meloxicam(DB00814)|Mesalazine(DB00244)|Nabumetone(DB00461)|Naproxen(DB00788)|Oxaprozin(DB00991)|Phenylbutazone(DB00812)|Rofecoxib(DB00533)|Salicyclic acid(DB00936)|Salsalate(DB01399)|Sulindac(DB00605)|Suprofen(DB00870)|Tenoxicam(DB00469)|Thalidomide(DB01041)|Tiaprofenic acid(DB01600)|Tolmetin(DB00500)|Valdecoxib(DB00580)	ACATACACCTCGGTTTTGACA	0.388													31	15					0	0	0	0
KCNT2	343450	broad.mit.edu	37	1	196295847	196295847	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr1:196295847G>A	uc001gtd.1	-	19	2336	c.2276C>T	c.(2275-2277)CCG>CTG	p.P759L	KCNT2_uc009wyt.1_Intron|KCNT2_uc001gte.1_Missense_Mutation_p.P709L|KCNT2_uc001gtf.1_Missense_Mutation_p.P759L|KCNT2_uc001gtg.1_RNA|KCNT2_uc009wyu.2_Missense_Mutation_p.P759L|KCNT2_uc001gth.1_Missense_Mutation_p.P280L	NM_198503	NP_940905	Q6UVM3	KCNT2_HUMAN	potassium channel, subfamily T, member 2	759	Cytoplasmic (Potential).					voltage-gated potassium channel complex	ATP binding|calcium-activated potassium channel activity|voltage-gated potassium channel activity			ovary(5)|breast(1)|skin(1)	7						ATATACTTACGGGTTATCCAA	0.284													20	31					0	0	0	0
ASPM	259266	broad.mit.edu	37	1	197053484	197053484	+	Missense_Mutation	SNP	C	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr1:197053484C>A	uc001gtu.2	-	28	10661	c.10404G>T	c.(10402-10404)ATG>ATT	p.M3468I	ASPM_uc001gtv.2_Missense_Mutation_p.M1883I	NM_018136	NP_060606	Q8IZT6	ASPM_HUMAN	asp (abnormal spindle)-like, microcephaly	3468					mitosis	cytoplasm|nucleus	calmodulin binding			ovary(4)|central_nervous_system(2)	6						TATCCATCACCATTTGAATAG	0.328													21	51					2.25844e-05	2.35602e-05	1	0
CACNA1S	779	broad.mit.edu	37	1	201036040	201036040	+	Missense_Mutation	SNP	C	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr1:201036040C>A	uc001gvv.2	-	20	2859	c.2632G>T	c.(2632-2634)GTG>TTG	p.V878L		NM_000069	NP_000060	Q13698	CAC1S_HUMAN	calcium channel, voltage-dependent, L type,	878	III.|Helical; Name=S3 of repeat III; (Potential).				axon guidance	I band|T-tubule|voltage-gated calcium channel complex	high voltage-gated calcium channel activity			ovary(3)|central_nervous_system(1)|skin(1)	5					Magnesium Sulfate(DB00653)|Verapamil(DB00661)	ATGAGGGACACGGCCACCACC	0.607													13	35					0.00010058	0.000103646	1	0
IGFN1	91156	broad.mit.edu	37	1	201195238	201195238	+	Silent	SNP	C	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr1:201195238C>A	uc001gwc.2	+	11	3025	c.2253C>A	c.(2251-2253)ATC>ATA	p.I751I	IGFN1_uc001gwb.2_RNA	NM_178275	NP_840059			RecName: Full=Immunoglobulin-like and fibronectin type III domain-containing protein 1; AltName: Full=EEF1A2-binding protein 1; AltName: Full=KY-interacting protein 1;											ovary(2)|pancreas(1)	3						CCTGGTGCATCCCCCGGCAGC	0.667													41	15					1.03325e-14	1.24727e-14	1	0
CR2	1380	broad.mit.edu	37	1	207649644	207649644	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr1:207649644C>T	uc001hfw.2	+	14	2699	c.2605C>T	c.(2605-2607)CGA>TGA	p.R869*	CR2_uc001hfv.2_Nonsense_Mutation_p.R928*|CR2_uc009xch.2_Intron	NM_001877	NP_001868	P20023	CR2_HUMAN	complement component (3d/Epstein Barr virus)	869	Sushi 14.|Extracellular (Potential).				complement activation, classical pathway|innate immune response	integral to membrane|plasma membrane	complement receptor activity|protein homodimerization activity			upper_aerodigestive_tract(3)|skin(3)|urinary_tract(1)|ovary(1)	8						AAACATAGCTCGATTTTCTCC	0.512													20	89					0	0	0	0
USH2A	7399	broad.mit.edu	37	1	215956128	215956128	+	Missense_Mutation	SNP	G	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr1:215956128G>T	uc001hku.1	-	53	10924	c.10537C>A	c.(10537-10539)CTT>ATT	p.L3513I		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	3513	Extracellular (Potential).|Fibronectin type-III 20.				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		GTATCTTCAAGATTGTCTATT	0.383										HNSCC(13;0.011)			55	64					9.64103e-21	1.22814e-20	1	0
USH2A	7399	broad.mit.edu	37	1	216040501	216040501	+	Missense_Mutation	SNP	T	C	C			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr1:216040501T>C	uc001hku.1	-	44	9080	c.8693A>G	c.(8692-8694)TAT>TGT	p.Y2898C		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	2898	Extracellular (Potential).|Fibronectin type-III 15.				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		CATATATTCATAGGTTGTAAA	0.343										HNSCC(13;0.011)			24	56					0	0	0	0
SPATA17	128153	broad.mit.edu	37	1	217947724	217947724	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr1:217947724G>A	uc001hlh.1	+	7	594	c.568G>A	c.(568-570)GAG>AAG	p.E190K	SPATA17_uc009xdr.1_RNA|SPATA17_uc001hli.2_Missense_Mutation_p.E190K	NM_138796	NP_620151	Q96L03	SPT17_HUMAN	spermatogenesis associated 17	190						cytoplasm	calmodulin binding			pancreas(1)	1				OV - Ovarian serous cystadenocarcinoma(81;0.0516)|all cancers(67;0.0891)|GBM - Glioblastoma multiforme(131;0.117)		TGATCCATGGGAGCTGCAATT	0.393													46	33					0	0	0	0
HLX	3142	broad.mit.edu	37	1	221053233	221053233	+	Missense_Mutation	SNP	T	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr1:221053233T>A	uc001hmv.3	+	1	491	c.34T>A	c.(34-36)TCC>ACC	p.S12T		NM_021958	NP_068777	Q14774	HLX_HUMAN	H2.0-like homeobox	12					cell differentiation	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)	2				GBM - Glioblastoma multiforme(131;0.00914)		CTTCTACGCCTCCAACTTCAG	0.721													15	3					0	0	0	0
C1orf65	164127	broad.mit.edu	37	1	223568415	223568415	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr1:223568415G>A	uc001hoa.2	+	1	1701	c.1598G>A	c.(1597-1599)CGG>CAG	p.R533Q		NM_152610	NP_689823	Q8N715	CA065_HUMAN	hypothetical protein LOC164127	533										central_nervous_system(1)|skin(1)	2				GBM - Glioblastoma multiforme(131;0.0704)		CAGCACCTCCGGGAGCTCAAC	0.532													101	28					0	0	0	0
JMJD4	65094	broad.mit.edu	37	1	227922491	227922491	+	Missense_Mutation	SNP	A	C	C			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr1:227922491A>C	uc001hrb.2	-	2	427	c.427T>G	c.(427-429)TGT>GGT	p.C143G	SNAP47_uc001hqz.2_Intron|SNAP47_uc001hra.2_Intron|SNAP47_uc001hrd.2_5'Flank|SNAP47_uc001hre.2_5'Flank|SNAP47_uc001hrf.2_5'Flank|JMJD4_uc001hrc.2_Missense_Mutation_p.C143G	NM_023007	NP_075383	Q9H9V9	JMJD4_HUMAN	jumonji domain containing 4 isoform 1	143											0		Prostate(94;0.0885)				TGGACCCCACAGTTTGCAACT	0.537													31	45					0	0	0	0
HEATR1	55127	broad.mit.edu	37	1	236734671	236734671	+	Missense_Mutation	SNP	T	C	C			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr1:236734671T>C	uc001hyd.1	-	28	4053	c.3928A>G	c.(3928-3930)ACT>GCT	p.T1310A	HEATR1_uc009xgh.1_Missense_Mutation_p.T472A	NM_018072	NP_060542	Q9H583	HEAT1_HUMAN	protein BAP28	1310					rRNA processing	nucleolus|ribonucleoprotein complex	protein binding			ovary(2)|skin(1)	3	Ovarian(103;0.0634)|Breast(184;0.133)	all_cancers(173;0.0255)|Prostate(94;0.175)	OV - Ovarian serous cystadenocarcinoma(106;0.00117)			CCAGCAACAGTGCCCAAAAGT	0.413													43	29					0	0	0	0
RYR2	6262	broad.mit.edu	37	1	237617718	237617718	+	Silent	SNP	G	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr1:237617718G>T	uc001hyl.1	+	15	1440	c.1320G>T	c.(1318-1320)GCG>GCT	p.A440A		NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	440	Cytoplasmic (By similarity).				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			GCAAGAAAGCGAAGGCTTCCA	0.408													31	29					3.21399e-22	4.15688e-22	1	0
GREM2	64388	broad.mit.edu	37	1	240656338	240656338	+	Silent	SNP	G	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr1:240656338G>T	uc001hys.2	-	2	718	c.438C>A	c.(436-438)CTC>CTA	p.L146L		NM_022469	NP_071914	Q9H772	GREM2_HUMAN	gremlin 2 precursor	146	CTCK.				BMP signaling pathway	extracellular space	cytokine activity				0		all_cancers(173;0.0196)	OV - Ovarian serous cystadenocarcinoma(106;0.0123)			GGATTTTCTTGAGTCGGAAGG	0.617													146	52					5.10563e-82	7.2917e-82	1	0
Unknown	0	broad.mit.edu	37	1	247902855	247902855	+	IGR	SNP	A	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr1:247902855A>T								OR6F1 (26798 upstream) : OR1C1 (17911 downstream)																							gggtaatgaaaagatgactaa	0.204													9	32					0	0	0	0
OR1C1	26188	broad.mit.edu	37	1	247920886	247920886	+	Missense_Mutation	SNP	T	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr1:247920886T>A	uc010pza.1	-	1	823	c.823A>T	c.(823-825)ACC>TCC	p.T275S		NM_012353	NP_036485	Q15619	OR1C1_HUMAN	olfactory receptor, family 1, subfamily C,	275	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;4.34e-05)|all_epithelial(71;1.13e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0786)|Lung NSC(105;0.0858)	all_cancers(173;0.0247)	OV - Ovarian serous cystadenocarcinoma(106;0.0168)			TACATGATGGTTGACAGAGTG	0.498													57	48					0	0	0	0
OR1C1	26188	broad.mit.edu	37	1	247921680	247921680	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr1:247921680C>T	uc010pza.1	-	1	29	c.29G>A	c.(28-30)AGG>AAG	p.R10K		NM_012353	NP_036485	Q15619	OR1C1_HUMAN	olfactory receptor, family 1, subfamily C,	10	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;4.34e-05)|all_epithelial(71;1.13e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0786)|Lung NSC(105;0.0858)	all_cancers(173;0.0247)	OV - Ovarian serous cystadenocarcinoma(106;0.0168)			GACGAATTCCCTGACAACTGT	0.408													24	9					0	0	0	0
OR2AK2	391191	broad.mit.edu	37	1	248128997	248128997	+	Missense_Mutation	SNP	C	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr1:248128997C>A	uc010pzd.1	+	1	364	c.364C>A	c.(364-366)CTT>ATT	p.L122I	OR2L13_uc001ids.2_Intron	NM_001004491	NP_001004491	Q8NG84	O2AK2_HUMAN	olfactory receptor, family 2, subfamily AK,	122	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0152)			GTTCTTGGCCCTTGGTGGAAC	0.443													202	197					8.27929e-85	1.18576e-84	1	0
OR2M3	127062	broad.mit.edu	37	1	248367188	248367188	+	Missense_Mutation	SNP	G	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr1:248367188G>T	uc010pzg.1	+	1	819	c.819G>T	c.(817-819)ATG>ATT	p.M273I		NM_001004689	NP_001004689	Q8NG83	OR2M3_HUMAN	olfactory receptor, family 2, subfamily M,	273	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0245)			AGGACAAGATGGTGTCTGTAT	0.493													194	51					4.64004e-97	6.66431e-97	1	0
TUBAL3	79861	broad.mit.edu	37	10	5435740	5435740	+	Missense_Mutation	SNP	C	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr10:5435740C>A	uc001ihy.2	-	4	1121	c.1081G>T	c.(1081-1083)GGC>TGC	p.G361C	TUBAL3_uc001ihz.2_Missense_Mutation_p.G321C	NM_024803	NP_079079	A6NHL2	TBAL3_HUMAN	tubulin, alpha-like 3	361					microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|structural molecule activity			skin(1)	1						TTGTTGATGCCCACCTTGAAA	0.582													22	29					3.28513e-13	3.84656e-13	1	0
GATA3	2625	broad.mit.edu	37	10	8115940	8115940	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr10:8115940C>T	uc001ika.2	+	6	1843	c.1286C>T	c.(1285-1287)TCC>TTC	p.S429F	GATA3_uc001ijz.2_Missense_Mutation_p.S430F	NM_002051	NP_002042	P23771	GATA3_HUMAN	GATA binding protein 3 isoform 2	429					aortic valve morphogenesis|blood coagulation|canonical Wnt receptor signaling pathway involved in metanephric kidney development|cardiac right ventricle morphogenesis|cell fate determination|cellular response to interferon-alpha|cellular response to interleukin-4|cellular response to tumor necrosis factor|defense response|ear development|lymphocyte migration|male gonad development|mesenchymal to epithelial transition|mesonephros development|negative regulation of cell cycle|negative regulation of cell motility|negative regulation of cell proliferation involved in mesonephros development|negative regulation of endothelial cell apoptosis|negative regulation of fat cell differentiation|negative regulation of fibroblast growth factor receptor signaling pathway involved in ureteric bud formation|negative regulation of glial cell-derived neurotrophic factor receptor signaling pathway involved in ureteric bud formation|negative regulation of inflammatory response|negative regulation of mammary gland epithelial cell proliferation|nephric duct formation|norepinephrine biosynthetic process|pharyngeal system development|phosphatidylinositol 3-kinase cascade|positive regulation of endothelial cell migration|positive regulation of interleukin-13 secretion|positive regulation of interleukin-4 production|positive regulation of interleukin-5 secretion|positive regulation of protein kinase B signaling cascade|positive regulation of T cell differentiation|positive regulation of thyroid hormone generation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription regulatory region DNA binding|positive regulation of ureteric bud formation|regulation of cellular response to X-ray|regulation of cytokine biosynthetic process|regulation of nephron tubule epithelial cell differentiation|response to estrogen stimulus|response to virus|sympathetic nervous system development|T cell receptor signaling pathway|TOR signaling cascade|ureteric bud formation|uterus development|ventricular septum development	nuclear chromatin|nucleolus|nucleoplasm	core promoter proximal region sequence-specific DNA binding|core promoter sequence-specific DNA binding|E-box binding|HMG box domain binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription|transcription coactivator activity|transcription factor binding|zinc ion binding			breast(17)|ovary(3)|central_nervous_system(2)	22						TCCAGCCTGTCCTTTGGACCA	0.642			F|N|S		breast		HDR syndrome (HYPOPARATHYROIDISM|SENSORINEURAL DEAFNESS|AND RENAL DISEASE)						71	145					0	0	0	0
MRC1	4360	broad.mit.edu	37	10	17949652	17949652	+	Missense_Mutation	SNP	C	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr10:17949652C>A	uc001ipk.2	+	28	4119	c.4016C>A	c.(4015-4017)TCT>TAT	p.S1339Y		NM_002438	NP_002429	P22897	MRC1_HUMAN	mannose receptor C type 1 precursor	1339	Extracellular (Potential).|C-type lectin 8.				receptor-mediated endocytosis	endosome membrane|integral to plasma membrane	mannose binding|receptor activity				0						CATGCGTCTTCTGGGTTTTGG	0.413													55	124					8.20758e-20	1.04031e-19	1	0
APBB1IP	54518	broad.mit.edu	37	10	26849703	26849703	+	Silent	SNP	G	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr10:26849703G>A	uc001iss.2	+	13	1620	c.1299G>A	c.(1297-1299)AAG>AAA	p.K433K		NM_019043	NP_061916	Q7Z5R6	AB1IP_HUMAN	amyloid beta (A4) precursor protein-binding,	433					blood coagulation|signal transduction	cytoskeleton|cytosol|focal adhesion|lamellipodium				lung(4)|skin(2)|central_nervous_system(1)	7						CTGTGGCAAAGGCTGGACTTG	0.493													34	72					0	0	0	0
ERCC6	2074	broad.mit.edu	37	10	50690805	50690805	+	Silent	SNP	C	A	A	rs75166536		TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr10:50690805C>A	uc001jhs.3	-	10	2251	c.2097G>T	c.(2095-2097)ACG>ACT	p.T699T	ERCC6_uc010qgr.1_Silent_p.T69T|ERCC6_uc001jhr.3_Silent_p.T99T	NM_000124	NP_000115	Q03468	ERCC6_HUMAN	excision repair cross-complementing rodent	699					base-excision repair|positive regulation of transcription elongation, DNA-dependent|transcription from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair	nucleolus|soluble fraction|transcription elongation factor complex	ATP binding|chromatin binding|DNA binding|DNA-dependent ATPase activity|helicase activity|protein C-terminus binding|protein complex binding|protein N-terminus binding			lung(5)|breast(5)|ovary(3)|large_intestine(2)|skin(1)	16						ACACAGGCAACGTGCCTAACT	0.483								Direct_reversal_of_damage|NER					28	61					1.26454e-06	1.35544e-06	1	0
BICC1	80114	broad.mit.edu	37	10	60558967	60558967	+	Missense_Mutation	SNP	G	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr10:60558967G>T	uc001jki.1	+	12	1680	c.1680G>T	c.(1678-1680)CAG>CAT	p.Q560H	BICC1_uc001jkj.1_Missense_Mutation_p.Q201H	NM_001080512	NP_001073981	Q9H694	BICC1_HUMAN	bicaudal C homolog 1	560					multicellular organismal development		RNA binding			ovary(2)|lung(1)|skin(1)	4						ACAGTATGCAGACCGAAGGCA	0.453													7	14					8.12818e-05	8.41018e-05	1	0
PHYHIPL	84457	broad.mit.edu	37	10	60998404	60998404	+	Missense_Mutation	SNP	C	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr10:60998404C>A	uc001jkk.3	+	4	801	c.535C>A	c.(535-537)CGC>AGC	p.R179S	PHYHIPL_uc001jkl.3_Missense_Mutation_p.R133S|PHYHIPL_uc001jkm.3_Missense_Mutation_p.R153S	NM_032439	NP_115815	Q96FC7	PHIPL_HUMAN	phytanoyl-CoA 2-hydroxylase interacting	179											0						GATTGCAGGACGCATGCTTAA	0.303													26	60					5.45727e-16	6.73196e-16	1	0
CCDC6	8030	broad.mit.edu	37	10	61566690	61566690	+	Missense_Mutation	SNP	C	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr10:61566690C>A	uc001jks.3	-	6	1630	c.994G>T	c.(994-996)GAC>TAC	p.D332Y		NM_005436	NP_005427	Q16204	CCDC6_HUMAN	coiled-coil domain containing 6	332	Potential.					cytoplasm|cytoskeleton	SH3 domain binding|structural constituent of cytoskeleton			ovary(3)|breast(1)	4				Kidney(211;0.0597)		CTTTCGTCGTCCATTTCTAAG	0.453													18	42					2.21704e-12	2.56045e-12	1	0
ADK	132	broad.mit.edu	37	10	76158270	76158270	+	Missense_Mutation	SNP	A	C	C			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr10:76158270A>C	uc001jwi.2	+	6	560	c.488A>C	c.(487-489)AAG>ACG	p.K163T	ADK_uc010qlb.1_Missense_Mutation_p.K163T|ADK_uc001jwj.2_Missense_Mutation_p.K146T|ADK_uc010qlc.1_Missense_Mutation_p.K128T	NM_006721	NP_006712	P55263	ADK_HUMAN	adenosine kinase isoform b	163					purine base metabolic process|purine ribonucleoside salvage	cytosol	adenosine kinase activity|ATP binding|metal ion binding|phosphotransferase activity, alcohol group as acceptor			ovary(1)|skin(1)	2	Prostate(51;0.0112)|Ovarian(15;0.148)				Adenosine(DB00640)|Adenosine monophosphate(DB00131)|Adenosine triphosphate(DB00171)|Pegademase bovine(DB00061)|Ribavirin(DB00811)	TGTTATAAAAAGGAAAAACAT	0.318													13	26					0	0	0	0
KCNMA1	3778	broad.mit.edu	37	10	78669856	78669856	+	Splice_Site	SNP	T	C	C			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr10:78669856T>C	uc001jxn.2	-	25	3194	c.3017_splice	c.e25-1	p.V1006_splice	KCNMA1_uc001jxj.2_Splice_Site_p.V952_splice|KCNMA1_uc001jxk.1_Splice_Site_p.V624_splice|KCNMA1_uc009xrt.1_Splice_Site_p.V797_splice|KCNMA1_uc001jxl.1_Splice_Site_p.V631_splice|KCNMA1_uc001jxo.2_Splice_Site_p.V989_splice|KCNMA1_uc001jxm.2_Splice_Site_p.V948_splice|KCNMA1_uc001jxq.2_Splice_Site_p.V978_splice	NM_001161352	NP_001154824	Q12791	KCMA1_HUMAN	large conductance calcium-activated potassium						cellular potassium ion homeostasis|negative regulation of cell volume|platelet activation|positive regulation of apoptosis|regulation of membrane potential|response to calcium ion|response to carbon monoxide|response to hypoxia|response to osmotic stress|smooth muscle contraction involved in micturition	apical plasma membrane|caveola|integral to membrane|voltage-gated potassium channel complex	actin binding|calcium-activated potassium channel activity|large conductance calcium-activated potassium channel activity|metal ion binding|voltage-gated potassium channel activity			pancreas(2)|ovary(1)	3	all_cancers(46;0.203)|all_epithelial(25;0.00604)|Prostate(51;0.0198)		OV - Ovarian serous cystadenocarcinoma(4;0.0586)|Epithelial(14;0.081)|all cancers(16;0.183)		Bendroflumethiazide(DB00436)|Benzthiazide(DB00562)|Chlorothiazide(DB00880)|Chlorzoxazone(DB00356)|Cromoglicate(DB01003)|Cyclothiazide(DB00606)|Diazoxide(DB01119)|Enflurane(DB00228)|Hydrochlorothiazide(DB00999)|Hydroflumethiazide(DB00774)|Methyclothiazide(DB00232)|Quinethazone(DB01325)|Trichlormethiazide(DB01021)	TATCGTTCACTAGAAAAAGCA	0.438													23	33					0	0	0	0
RGR	5995	broad.mit.edu	37	10	86012697	86012697	+	Missense_Mutation	SNP	T	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr10:86012697T>A	uc001kdc.1	+	4	481	c.443T>A	c.(442-444)CTG>CAG	p.L148Q	RGR_uc001kdd.1_Missense_Mutation_p.L152Q|RGR_uc001kde.1_Missense_Mutation_p.L148Q	NM_001012720	NP_001012738	P47804	RGR_HUMAN	retinal G-protein coupled receptor isoform 2	148	Helical; Name=4; (Potential).				phototransduction|protein-chromophore linkage|visual perception	integral to plasma membrane	G-protein coupled receptor activity|photoreceptor activity|protein binding			ovary(1)	1						CTGCCCCTTCTGGGTTGGGGT	0.617													23	49					0	0	0	0
LIPJ	142910	broad.mit.edu	37	10	90366488	90366488	+	Missense_Mutation	SNP	G	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr10:90366488G>T	uc001kff.2	+	11	1239	c.925G>T	c.(925-927)GGT>TGT	p.G309C		NM_001010939	NP_001010939	Q5W064	LIPJ_HUMAN	lipase, family member J	309					lipid catabolic process		hydrolase activity			ovary(1)	1		all_cancers(4;2.79e-10)|Prostate(4;1.68e-15)|all_epithelial(4;1.43e-09)|Colorectal(252;0.0381)|Breast(4;0.141)|Melanoma(5;0.2)|all_hematologic(4;0.222)		Colorectal(12;1.02e-05)|COAD - Colon adenocarcinoma(12;1.54e-05)		AATTTGGAATGGTAAAAGTGA	0.313													34	44					1.41504e-22	1.83484e-22	1	0
GPR120	338557	broad.mit.edu	37	10	95326494	95326494	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr10:95326494C>T	uc010qnt.1	+	1	73	c.17C>T	c.(16-18)GCG>GTG	p.A6V	GPR120_uc010qnu.1_Missense_Mutation_p.A6V	NM_181745	NP_859529	Q5NUL3	O3FA1_HUMAN	G protein-coupled receptor 120	6	Extracellular (Potential).				negative regulation of cytokine secretion|negative regulation of inflammatory response|regulation of glucose transport	integral to membrane|plasma membrane	fatty acid binding				0		Colorectal(252;0.122)				CCTGAATGCGCGCGGGCAGCG	0.697													6	10					0	0	0	0
CYP2C9	1559	broad.mit.edu	37	10	96708890	96708890	+	Missense_Mutation	SNP	T	C	C			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr10:96708890T>C	uc001kka.3	+	5	693	c.668T>C	c.(667-669)ATT>ACT	p.I223T	CYP2C9_uc009xut.2_Missense_Mutation_p.I223T	NM_000771	NP_000762	P11712	CP2C9_HUMAN	cytochrome P450, family 2, subfamily C,	223					exogenous drug catabolic process|monocarboxylic acid metabolic process|monoterpenoid metabolic process|oxidative demethylation|steroid metabolic process|urea metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	(S)-limonene 6-monooxygenase activity|(S)-limonene 7-monooxygenase activity|4-hydroxyacetophenone monooxygenase activity|caffeine oxidase activity|drug binding|electron carrier activity|heme binding|oxygen binding|steroid hydroxylase activity			skin(4)|ovary(2)	6		Colorectal(252;0.0902)		all cancers(201;6.93e-05)	Acenocoumarol(DB01418)|Alosetron(DB00969)|Amiodarone(DB01118)|Antihemophilic Factor(DB00025)|Aprepitant(DB00673)|Bosentan(DB00559)|Carprofen(DB00821)|Carvedilol(DB01136)|Celecoxib(DB00482)|Clomipramine(DB01242)|Dapsone(DB00250)|Delavirdine(DB00705)|Desloratadine(DB00967)|Desogestrel(DB00304)|Diclofenac(DB00586)|Esomeprazole(DB00736)|Etodolac(DB00749)|Fluconazole(DB00196)|Fluoxetine(DB00472)|Flurbiprofen(DB00712)|Fluvastatin(DB01095)|Fluvoxamine(DB00176)|Formoterol(DB00983)|Gemfibrozil(DB01241)|Ginkgo biloba(DB01381)|Glibenclamide(DB01016)|Glimepiride(DB00222)|Glipizide(DB01067)|Guanfacine(DB01018)|Hydromorphone(DB00327)|Ibuprofen(DB01050)|Imipramine(DB00458)|Irbesartan(DB01029)|Ketoconazole(DB01026)|Lansoprazole(DB00448)|Losartan(DB00678)|Lumiracoxib(DB01283)|Marinol(DB00470)|Mefenamic acid(DB00784)|Meloxicam(DB00814)|Mephenytoin(DB00532)|Metronidazole(DB00916)|Miconazole(DB01110)|Midazolam(DB00683)|Montelukast(DB00471)|Nateglinide(DB00731)|Nelfinavir(DB00220)|Nicardipine(DB00622)|Oxymorphone(DB01192)|Pantoprazole(DB00213)|Paramethadione(DB00617)|Phenprocoumon(DB00946)|Phenytoin(DB00252)|Pravastatin(DB00175)|Quinidine(DB00908)|Ritonavir(DB00503)|Rosiglitazone(DB00412)|Sertraline(DB01104)|Sildenafil(DB00203)|Sulfamethoxazole(DB01015)|Suprofen(DB00870)|Tamoxifen(DB00675)|Tenoxicam(DB00469)|Terfenadine(DB00342)|Tolbutamide(DB01124)|Torasemide(DB00214)|Troleandomycin(DB01361)|Valdecoxib(DB00580)|Valsartan(DB00177)|Voriconazole(DB00582)|Warfarin(DB00682)|Zafirlukast(DB00549)|Zileuton(DB00744)	TCTCCTATCATTGATTACTTC	0.274													18	23					0	0	0	0
BLNK	29760	broad.mit.edu	37	10	97987324	97987324	+	Splice_Site	SNP	T	G	G			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr10:97987324T>G	uc001kls.3	-	5	383	c.205_splice	c.e5-1	p.D69_splice	BLNK_uc001kme.3_Splice_Site|BLNK_uc001klt.3_Splice_Site|BLNK_uc009xvc.2_Intron|BLNK_uc001klu.3_Splice_Site|BLNK_uc001klv.3_Splice_Site_p.D69_splice|BLNK_uc001klw.3_Splice_Site|BLNK_uc001klx.3_Splice_Site_p.D69_splice|BLNK_uc001kly.3_Splice_Site_p.D69_splice|BLNK_uc001klz.3_Splice_Site|BLNK_uc001kma.3_Splice_Site_p.D69_splice|BLNK_uc001kmb.3_Splice_Site|BLNK_uc001kmc.3_Splice_Site|BLNK_uc001kmd.3_Splice_Site|BLNK_uc009xvd.2_Splice_Site	NM_013314	NP_037446	Q8WV28	BLNK_HUMAN	B-cell linker isoform 1						B cell differentiation|humoral immune response|inflammatory response|intracellular signal transduction	cytoplasm|plasma membrane	SH3/SH2 adaptor activity|transmembrane receptor protein tyrosine kinase adaptor activity			skin(2)	2		Colorectal(252;0.083)		Epithelial(162;7.89e-08)|all cancers(201;2.27e-06)		GTCGCTGTCCTGCAAGTGCAG	0.562													42	87					0	0	0	0
CRTAC1	55118	broad.mit.edu	37	10	99664467	99664467	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr10:99664467G>A	uc001kou.1	-	7	1311	c.955C>T	c.(955-957)CTC>TTC	p.L319F	CRTAC1_uc001kov.2_Missense_Mutation_p.L308F|CRTAC1_uc001kot.1_Missense_Mutation_p.L109F	NM_018058	NP_060528	Q9NQ79	CRAC1_HUMAN	cartilage acidic protein 1 precursor	319	FG-GAP 3; atypical.					proteinaceous extracellular matrix	calcium ion binding			ovary(4)|pancreas(1)	5		Colorectal(252;0.24)		Epithelial(162;2.18e-10)|all cancers(201;3.27e-09)		TGCAGATAGAGGCGGTGGGGG	0.493													58	120					0	0	0	0
SORCS1	114815	broad.mit.edu	37	10	108339127	108339127	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr10:108339127C>G	uc001kym.2	-	25	3379	c.3371G>C	c.(3370-3372)AGG>ACG	p.R1124T	SORCS1_uc001kyl.2_Missense_Mutation_p.R1124T|SORCS1_uc009xxs.2_Missense_Mutation_p.R1124T|SORCS1_uc001kyn.1_Missense_Mutation_p.R1124T|SORCS1_uc001kyo.2_Missense_Mutation_p.R1124T	NM_052918	NP_443150	Q8WY21	SORC1_HUMAN	SORCS receptor 1 isoform a	1124	Cytoplasmic (Potential).					integral to membrane	neuropeptide receptor activity|protein binding			breast(1)|central_nervous_system(1)	2		Breast(234;0.0256)|Colorectal(252;0.09)|Lung NSC(174;0.168)		Epithelial(162;1.66e-05)|all cancers(201;0.000689)		GGACACGCACCTTTTAAACTT	0.532													23	48					0	0	0	0
KCNK18	338567	broad.mit.edu	37	10	118969760	118969760	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr10:118969760G>A	uc010qsr.1	+	3	1105	c.1105G>A	c.(1105-1107)GTT>ATT	p.V369I		NM_181840	NP_862823	Q7Z418	KCNKI_HUMAN	potassium channel, subfamily K, member 18	369	Cytoplasmic (Potential).					integral to membrane|plasma membrane				upper_aerodigestive_tract(1)	1		Colorectal(252;0.19)		all cancers(201;0.0211)		ATACAAAAATGTTATGCTATT	0.378													34	81					0	0	0	0
NPS	594857	broad.mit.edu	37	10	129347783	129347783	+	Silent	SNP	G	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr10:129347783G>T	uc001ljx.1	+	2	59	c.39G>T	c.(37-39)CTG>CTT	p.L13L		NM_001030013	NP_001025184	P0C0P6	NPS_HUMAN	neuropeptide S precursor	13					neuropeptide signaling pathway	extracellular region					0						TCCTAGTTCTGTCGCTGTCCA	0.368													31	77					5.71845e-15	6.93602e-15	1	0
C10orf93	255352	broad.mit.edu	37	10	134750492	134750492	+	Missense_Mutation	SNP	A	C	C			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr10:134750492A>C	uc001llt.1	-	7	804	c.728T>G	c.(727-729)GTC>GGC	p.V243G		NM_173572	NP_775843	Q5SR76	CJ093_HUMAN	hypothetical protein LOC255352	243							binding			pancreas(1)	1		all_cancers(35;1.8e-07)|all_epithelial(44;6.22e-06)|Lung NSC(174;0.0108)|all_lung(145;0.0173)|all_neural(114;0.0726)|Colorectal(31;0.119)|Glioma(114;0.172)|Melanoma(40;0.175)		Epithelial(32;4.28e-05)|OV - Ovarian serous cystadenocarcinoma(35;4.31e-05)|all cancers(32;5.02e-05)		ATAGAAAGTGACTGACAGGCT	0.229													7	18					0	0	0	0
OR51M1	390059	broad.mit.edu	37	11	5410672	5410672	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr11:5410672C>G	uc010qzc.1	+	1	44	c.44C>G	c.(43-45)TCC>TGC	p.S15C	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001004756	NP_001004756	B2RNI9	B2RNI9_HUMAN	olfactory receptor, family 51, subfamily M,	15						integral to membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;1.98e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		ATGCTGCTATCCAACATTACT	0.393													67	138					0	0	0	0
OR10A6	390093	broad.mit.edu	37	11	7949863	7949863	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr11:7949863C>T	uc010rbh.1	-	1	347	c.347G>A	c.(346-348)GGA>GAA	p.G116E		NM_001004461	NP_001004461	Q8NH74	O10A6_HUMAN	olfactory receptor, family 10, subfamily A,	116	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2				Epithelial(150;1.38e-07)|BRCA - Breast invasive adenocarcinoma(625;0.189)		AGCCATTGCTCCCAGAAGAAA	0.368													44	75					0	0	0	0
CALCB	797	broad.mit.edu	37	11	15098958	15098958	+	Silent	SNP	C	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr11:15098958C>A	uc001mlx.1	+	4	424	c.351C>A	c.(349-351)GCC>GCA	p.A117A	CALCB_uc009ygr.1_Silent_p.A117A	NM_000728	NP_000719	P10092	CALCB_HUMAN	calcitonin-related polypeptide, beta precursor	117					cellular calcium ion homeostasis|signal transduction|vasodilation	extracellular region|soluble fraction	neuropeptide hormone activity				0						GTTCCAAAGCCTTTGGCAGGC	0.557													9	25					5.16669e-11	5.8998e-11	1	0
CALCB	797	broad.mit.edu	37	11	15098970	15098970	+	Silent	SNP	C	G	G			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr11:15098970C>G	uc001mlx.1	+	4	436	c.363C>G	c.(361-363)CGC>CGG	p.R121R	CALCB_uc009ygr.1_Silent_p.R121R	NM_000728	NP_000719	P10092	CALCB_HUMAN	calcitonin-related polypeptide, beta precursor	121					cellular calcium ion homeostasis|signal transduction|vasodilation	extracellular region|soluble fraction	neuropeptide hormone activity				0						TTGGCAGGCGCCGCAGGGACC	0.547													7	27					0	0	0	0
C11orf46	120534	broad.mit.edu	37	11	30354491	30354491	+	Nonsense_Mutation	SNP	A	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr11:30354491A>T	uc001mso.1	+	3	669	c.505A>T	c.(505-507)AAA>TAA	p.K169*		NM_152316	NP_689529	Q8N8R7	CK046_HUMAN	hypothetical protein LOC120534	169											0						AGAAACTGGTAAAAGAGAAAA	0.388													16	24					0	0	0	0
RAG1	5896	broad.mit.edu	37	11	36595864	36595864	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr11:36595864C>T	uc001mwu.3	+	2	1134	c.1010C>T	c.(1009-1011)CCT>CTT	p.P337L	RAG1_uc001mwt.2_RNA	NM_000448	NP_000439	P15918	RAG1_HUMAN	recombination activating gene 1	337					histone monoubiquitination|immune response|pre-B cell allelic exclusion|protein autoubiquitination|T cell differentiation in thymus|V(D)J recombination	nucleus	endonuclease activity|histone binding|protein homodimerization activity|sequence-specific DNA binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|pancreas(1)|lung(1)|kidney(1)|skin(1)	5	all_lung(20;0.226)	all_hematologic(20;0.107)				CCATGCTTCCCTACTGACCTG	0.493									Familial_Hemophagocytic_Lymphohistiocytosis				26	51					0	0	0	0
RAG1	5896	broad.mit.edu	37	11	36597586	36597586	+	Missense_Mutation	SNP	A	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr11:36597586A>T	uc001mwu.3	+	2	2856	c.2732A>T	c.(2731-2733)CAG>CTG	p.Q911L	RAG1_uc001mwt.2_RNA	NM_000448	NP_000439	P15918	RAG1_HUMAN	recombination activating gene 1	911					histone monoubiquitination|immune response|pre-B cell allelic exclusion|protein autoubiquitination|T cell differentiation in thymus|V(D)J recombination	nucleus	endonuclease activity|histone binding|protein homodimerization activity|sequence-specific DNA binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|pancreas(1)|lung(1)|kidney(1)|skin(1)	5	all_lung(20;0.226)	all_hematologic(20;0.107)				TCCCTCTGCCAGTACAGTTTC	0.463									Familial_Hemophagocytic_Lymphohistiocytosis				21	50					0	0	0	0
LRRC4C	57689	broad.mit.edu	37	11	40136477	40136477	+	Missense_Mutation	SNP	T	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr11:40136477T>A	uc001mxa.1	-	2	3330	c.1366A>T	c.(1366-1368)ACC>TCC	p.T456S	LRRC4C_uc001mxc.1_Missense_Mutation_p.T452S|LRRC4C_uc001mxd.1_Missense_Mutation_p.T452S|LRRC4C_uc001mxb.1_Missense_Mutation_p.T452S	NM_020929	NP_065980	Q9HCJ2	LRC4C_HUMAN	netrin-G1 ligand precursor	456					regulation of axonogenesis	integral to membrane	protein binding			ovary(4)|skin(3)|central_nervous_system(1)	8		all_lung(304;0.0575)|Lung NSC(402;0.138)				ACTGTGACGGTTGAAAAGTAA	0.488													30	60					0	0	0	0
LOC440040	440040	broad.mit.edu	37	11	49598332	49598332	+	Missense_Mutation	SNP	C	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr11:49598332C>A	uc010rhy.1	+	2	923	c.445C>A	c.(445-447)CTG>ATG	p.L149M	LOC440040_uc009ymb.2_Missense_Mutation_p.L149M	NR_027044				SubName: Full=cDNA FLJ60249, highly similar to Metabotropic glutamate receptor 5;												0						CATCATGGATCTGAGTGACAA	0.473													22	44					1.85244e-09	2.05512e-09	1	0
OR4C13	283092	broad.mit.edu	37	11	49974158	49974158	+	Missense_Mutation	SNP	G	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr11:49974158G>T	uc010rhz.1	+	1	184	c.184G>T	c.(184-186)GCC>TCC	p.A62S		NM_001001955	NP_001001955	Q8NGP0	OR4CD_HUMAN	olfactory receptor, family 4, subfamily C,	62	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)|ovary(1)	4						CTTTTTCCTGGCCTATCTCTC	0.433													98	219					6.99195e-59	9.87443e-59	1	0
LOC646813	646813	broad.mit.edu	37	11	50378090	50378090	+	RNA	SNP	G	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr11:50378090G>A	uc001nhe.2	+	5		c.720G>A			LOC646813_uc001nhf.1_RNA|LOC646813_uc001nhg.1_RNA|LOC646813_uc001nhh.1_RNA|LOC646813_uc010rib.1_RNA	NR_024504				Homo sapiens mRNA for hypothetical protein, partial sequence, clone:Hsa11-digit09-11-09-R.												0						ACTGCATTCGGATGACCCACT	0.398													20	63					0	0	0	0
OR4C16	219428	broad.mit.edu	37	11	55340089	55340089	+	Silent	SNP	G	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr11:55340089G>T	uc010rih.1	+	1	486	c.486G>T	c.(484-486)CTG>CTT	p.L162L		NM_001004701	NP_001004701	Q8NGL9	OR4CG_HUMAN	olfactory receptor, family 4, subfamily C,	162	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		all_epithelial(135;0.0748)				TTCTTGCCCTGAGTTTGCCAT	0.468													34	84					1.59361e-14	1.91007e-14	1	0
OR5D14	219436	broad.mit.edu	37	11	55563356	55563356	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr11:55563356G>A	uc010rim.1	+	1	325	c.325G>A	c.(325-327)GCT>ACT	p.A109T		NM_001004735	NP_001004735	Q8NGL3	OR5DE_HUMAN	olfactory receptor, family 5, subfamily D,	109	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)	3		all_epithelial(135;0.196)				GTCCTGCACTGCTGTGGTGAC	0.488													16	25					0	0	0	0
OR8J3	81168	broad.mit.edu	37	11	55904598	55904598	+	Silent	SNP	G	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr11:55904598G>T	uc010riz.1	-	1	597	c.597C>A	c.(595-597)GTC>GTA	p.V199V		NM_001004064	NP_001004064	Q8NGG0	OR8J3_HUMAN	olfactory receptor, family 8, subfamily J,	199	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	Esophageal squamous(21;0.00693)					CAGATATAAAGACTATTGTTT	0.313													28	42					5.77227e-19	7.27995e-19	1	0
OR8J1	219477	broad.mit.edu	37	11	56128008	56128008	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr11:56128008G>T	uc010rjh.1	+	1	286	c.286G>T	c.(286-288)GAA>TAA	p.E96*		NM_001005205	NP_001005205	Q8NGP2	OR8J1_HUMAN	olfactory receptor, family 8, subfamily J,	96	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity	p.E96A(1)		ovary(2)	2	Esophageal squamous(21;0.00448)					CTCATTCTATGAATGTGCCAC	0.418													35	64					1.96642e-18	2.46776e-18	1	0
Unknown	0	broad.mit.edu	37	11	58660262	58660262	+	RNA	SNP	C	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr11:58660262C>T	uc001nne.1	+	2		c.202C>T								Homo sapiens mRNA for hypothetical protein, partial sequence, clone:Hsa11-digit13-03-08-F.																		GCAATAAAAGCAAGCTTGGAA	0.388													8	14					0	0	0	0
Unknown	0	broad.mit.edu	37	11	58660264	58660264	+	RNA	SNP	A	G	G			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr11:58660264A>G	uc001nne.1	+	2		c.204A>G								Homo sapiens mRNA for hypothetical protein, partial sequence, clone:Hsa11-digit13-03-08-F.																		AATAAAAGCAAGCTTGGAAGT	0.393													7	13					0	0	0	0
OR5A2	219981	broad.mit.edu	37	11	59190059	59190059	+	Missense_Mutation	SNP	C	A	A	rs151222077	by1000genomes	TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr11:59190059C>A	uc010rkt.1	-	1	368	c.368G>T	c.(367-369)CGG>CTG	p.R123L		NM_001001954	NP_001001954	Q8NGI9	OR5A2_HUMAN	olfactory receptor, family 5, subfamily A,	123	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TGCAGCATACCGGTCATAGGC	0.483													18	28					3.99206e-14	4.75111e-14	1	0
MS4A8B	83661	broad.mit.edu	37	11	60482537	60482537	+	Missense_Mutation	SNP	T	C	C			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr11:60482537T>C	uc001npv.2	+	6	781	c.578T>C	c.(577-579)CTC>CCC	p.L193P		NM_031457	NP_113645	Q9BY19	M4A8B_HUMAN	membrane-spanning 4-domains, subfamily A, member	193	Helical; (Potential).					integral to membrane	receptor activity				0						GTCTTCTGCCTCCTGGAGTTT	0.408													61	91					0	0	0	0
MS4A10	341116	broad.mit.edu	37	11	60557908	60557908	+	Missense_Mutation	SNP	C	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr11:60557908C>A	uc001npz.1	+	2	196	c.100C>A	c.(100-102)CAG>AAG	p.Q34K		NM_206893	NP_996776	Q96PG2	M4A10_HUMAN	membrane-spanning 4-domains, subfamily A, member	34	Cytoplasmic (Potential).					integral to membrane	receptor activity			ovary(1)|skin(1)	2						AAGTGCACCCCAGAACACGAC	0.587													39	82					1.91658e-06	2.03286e-06	1	0
PGA3	643834	broad.mit.edu	37	11	60971081	60971081	+	Silent	SNP	C	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr11:60971081C>T	uc001nqx.2	+	1	98	c.45C>T	c.(43-45)TGC>TGT	p.C15C	PGA3_uc010rld.1_Silent_p.C15C	NM_001079807	NP_001073275			pepsinogen 3, group I precursor											ovary(1)|skin(1)	2						TCTCTGAGTGCATCATGTACA	0.567													67	50					0	0	0	0
VWCE	220001	broad.mit.edu	37	11	61032011	61032011	+	Silent	SNP	C	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr11:61032011C>A	uc001nra.2	-	19	2457	c.2178G>T	c.(2176-2178)CGG>CGT	p.R726R	VWCE_uc001nrb.2_RNA	NM_152718	NP_689931	Q96DN2	VWCE_HUMAN	von Willebrand factor C and EGF domains	726	VWFC 6.					extracellular region	calcium ion binding			ovary(1)	1						CGGCACAGGCCCGCTGGCAGG	0.617													7	14					1.58986e-06	1.68986e-06	1	0
NDUFS8	4728	broad.mit.edu	37	11	67803773	67803773	+	Silent	SNP	C	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr11:67803773C>T	uc001onc.2	+	6	533	c.426C>T	c.(424-426)CGC>CGT	p.R142R	NDUFS8_uc009ysb.1_RNA|NDUFS8_uc009ysc.1_Silent_p.R142R|TCIRG1_uc001ond.1_5'Flank|TCIRG1_uc001one.2_5'Flank	NM_002496	NP_002487	O00217	NDUS8_HUMAN	NADH dehydrogenase ubiquinone Fe-S 8 precursor	142	4Fe-4S ferredoxin-type 2.				mitochondrial electron transport, NADH to ubiquinone|mitochondrial respiratory chain complex I assembly|response to oxidative stress|transport	mitochondrial respiratory chain complex I	4 iron, 4 sulfur cluster binding|electron carrier activity|metal ion binding|NADH dehydrogenase (ubiquinone) activity			skin(1)	1					NADH(DB00157)	GGACCACCCGCTATGACATCG	0.662													19	26					0	0	0	0
MYEOV	26579	broad.mit.edu	37	11	69063226	69063226	+	Silent	SNP	T	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr11:69063226T>A	uc001oov.2	+	3	759	c.309T>A	c.(307-309)GCT>GCA	p.A103A	MYEOV_uc001oox.2_Intron|MYEOV_uc009ysl.2_Silent_p.A103A|MYEOV_uc001oow.2_Silent_p.A45A	NM_138768	NP_620123	Q96EZ4	MYEOV_HUMAN	myeloma overexpressed	103											0	all_lung(4;2.21e-19)|Lung NSC(4;6.13e-19)|Melanoma(5;0.00128)		LUSC - Lung squamous cell carcinoma(11;3.33e-11)|STAD - Stomach adenocarcinoma(18;0.00654)|LUAD - Lung adenocarcinoma(13;0.0713)	Kidney(183;2.99e-09)|KIRC - Kidney renal clear cell carcinoma(183;3.23e-08)|Lung(977;0.00361)|LUSC - Lung squamous cell carcinoma(976;0.0153)		CTGCTGGAGCTGGTGACCGGG	0.647													28	64					0	0	0	0
FOLR2	2350	broad.mit.edu	37	11	71932330	71932330	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr11:71932330G>A	uc009ytd.2	+	4	619	c.450G>A	c.(448-450)TGG>TGA	p.W150*	FOLR2_uc009yte.2_Nonsense_Mutation_p.W150*|FOLR2_uc001ose.3_Nonsense_Mutation_p.W150*|FOLR2_uc009ytf.2_Nonsense_Mutation_p.W150*	NM_001113534	NP_001107006	P14207	FOLR2_HUMAN	folate receptor 2 precursor	150					folic acid transport	anchored to membrane|extracellular region|membrane fraction|plasma membrane	folic acid binding|receptor activity			breast(2)|ovary(1)	3					Folic Acid(DB00158)	AGAGCAACTGGCACAGAGGAT	0.532													11	37					0	0	0	0
KLHL35	283212	broad.mit.edu	37	11	75139659	75139659	+	Silent	SNP	T	G	G			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr11:75139659T>G	uc001owm.1	-	2	453	c.234A>C	c.(232-234)CTA>CTC	p.L78L		NM_001039548	NP_001034637	Q6PF15	KLH35_HUMAN	kelch-like 35	78											0						TCACTTCAGCTAGGTCCATGA	0.627													13	46					0	0	0	0
MOGAT2	80168	broad.mit.edu	37	11	75438505	75438505	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr11:75438505C>T	uc010rru.1	+	3	296	c.296C>T	c.(295-297)CCC>CTC	p.P99L	MOGAT2_uc001oww.1_Missense_Mutation_p.P99L|MOGAT2_uc010rrv.1_Missense_Mutation_p.P17L	NM_025098	NP_079374	Q3SYC2	MOGT2_HUMAN	monoacylglycerol O-acyltransferase 2	99					glycerol metabolic process	endoplasmic reticulum membrane|integral to membrane	2-acylglycerol O-acyltransferase activity			ovary(2)	2	Ovarian(111;0.103)					GAGCTGGACCCCTCTCGGAAC	0.438													18	46					0	0	0	0
ODZ4	26011	broad.mit.edu	37	11	78498058	78498058	+	Missense_Mutation	SNP	C	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr11:78498058C>A	uc001ozl.3	-	16	2713	c.2250G>T	c.(2248-2250)TGG>TGT	p.W750C		NM_001098816	NP_001092286	Q6N022	TEN4_HUMAN	odz, odd Oz/ten-m homolog 4	750	Extracellular (Potential).|EGF-like 6.				signal transduction	integral to membrane				ovary(2)|pancreas(2)	4						CTGCCCCCATCCAGCCATCCT	0.692													8	7					0.00307968	0.00313534	1	0
CCDC89	220388	broad.mit.edu	37	11	85396955	85396955	+	Missense_Mutation	SNP	C	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr11:85396955C>A	uc001pau.1	-	1	366	c.219G>T	c.(217-219)CAG>CAT	p.Q73H		NM_152723	NP_689936	Q8N998	CCD89_HUMAN	coiled-coil domain containing 89	73	Potential.					cytoplasm|nucleus					0		Acute lymphoblastic leukemia(157;4.88e-06)|all_hematologic(158;0.00572)				TGAGCTGGGACTGCTCTTCAA	0.587													17	30					9.16793e-09	1.00827e-08	1	0
FAT3	120114	broad.mit.edu	37	11	92570929	92570929	+	Missense_Mutation	SNP	A	G	G			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr11:92570929A>G	uc001pdj.3	+	16	10342	c.10325A>G	c.(10324-10326)AAC>AGC	p.N3442S	FAT3_uc001pdi.3_5'Flank	NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	3442	Extracellular (Potential).|Cadherin 31.				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				GTGAATGACAACAGCCCGGTG	0.468										TCGA Ovarian(4;0.039)			18	57					0	0	0	0
CASP5	838	broad.mit.edu	37	11	104869611	104869611	+	Splice_Site	SNP	C	T	T	rs141481245	byFrequency	TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr11:104869611C>T	uc010rva.1	-	7	1128	c.1096_splice	c.e7+1	p.H366_splice	CASP5_uc010ruz.1_Splice_Site_p.H379_splice|CASP5_uc010rvb.1_Splice_Site_p.H308_splice|CASP5_uc010rvc.1_Splice_Site_p.H224_splice|CASP5_uc009yxh.2_Splice_Site_p.H148_splice|CASP5_uc010rvd.1_Splice_Site_p.H148_splice	NM_004347	NP_004338	P51878	CASP5_HUMAN	caspase 5 isoform a precursor						apoptosis|cellular response to mechanical stimulus|proteolysis|regulation of apoptosis	intracellular	cysteine-type endopeptidase activity|protein binding			ovary(2)|lung(1)	3		Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0017)|Melanoma(852;0.0047)		BRCA - Breast invasive adenocarcinoma(274;0.000943)|Epithelial(105;0.0104)|all cancers(92;0.042)		AAGACACATACGTGGTGTTGA	0.438													33	57					0	0	0	0
CWF19L2	143884	broad.mit.edu	37	11	107200714	107200714	+	Missense_Mutation	SNP	T	C	C			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr11:107200714T>C	uc010rvp.1	-	17	2501	c.2471A>G	c.(2470-2472)GAT>GGT	p.D824G	CWF19L2_uc001pjh.3_RNA|CWF19L2_uc009yxo.2_RNA	NM_152434	NP_689647	Q2TBE0	C19L2_HUMAN	CWF19-like 2, cell cycle control	824							catalytic activity				0		Melanoma(852;1.75e-05)|all_epithelial(67;6.27e-05)|Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0017)|Breast(348;0.0258)		Epithelial(105;7.18e-06)|BRCA - Breast invasive adenocarcinoma(274;1.65e-05)|all cancers(92;1.76e-05)		AAGGCCAAAATCCACAGAGAA	0.398													4	9					0	0	0	0
DSCAML1	57453	broad.mit.edu	37	11	117403130	117403130	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr11:117403130C>A	uc001prh.1	-	4	801	c.799G>T	c.(799-801)GAG>TAG	p.E267*	DSCAML1_uc001pri.1_Nonsense_Mutation_p.E71*	NM_020693	NP_065744	Q8TD84	DSCL1_HUMAN	Down syndrome cell adhesion molecule like 1	207	Extracellular (Potential).|Ig-like C2-type 2.				axonogenesis|brain development|cell fate determination|dorsal/ventral pattern formation|embryonic skeletal system morphogenesis|homophilic cell adhesion	cell surface|integral to membrane|plasma membrane	protein homodimerization activity			ovary(3)|large_intestine(2)|skin(2)|upper_aerodigestive_tract(1)	8	all_hematologic(175;0.0487)	Breast(348;0.0424)|Medulloblastoma(222;0.0523)|all_hematologic(192;0.232)		BRCA - Breast invasive adenocarcinoma(274;9.12e-06)|Epithelial(105;0.00172)		TGCCGGGTCTCCCCGCTATAC	0.607													38	79					1.30475e-32	1.76874e-32	1	0
PHLDB1	23187	broad.mit.edu	37	11	118513088	118513088	+	Silent	SNP	C	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr11:118513088C>T	uc001ptr.1	+	14	3206	c.2853C>T	c.(2851-2853)CCC>CCT	p.P951P	PHLDB1_uc001pts.2_Silent_p.P951P|PHLDB1_uc001ptt.2_Intron|PHLDB1_uc001ptu.1_RNA|PHLDB1_uc001ptv.1_Silent_p.P751P|PHLDB1_uc001ptw.1_Intron|PHLDB1_uc009zai.1_Intron|PHLDB1_uc001ptx.1_Intron|PHLDB1_uc010ryi.1_Silent_p.P94P|PHLDB1_uc010ryj.1_Silent_p.P89P	NM_015157	NP_055972	Q86UU1	PHLB1_HUMAN	pleckstrin homology-like domain, family B,	951											0	all_hematologic(175;0.0839)	Medulloblastoma(222;0.0523)|all_hematologic(192;0.0735)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;3.4e-05)		CGCCTCTGCCCGCCAAAGCTT	0.637													58	156					0	0	0	0
TMEM225	338661	broad.mit.edu	37	11	123754038	123754038	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr11:123754038C>T	uc001pzi.2	-	4	693	c.485G>A	c.(484-486)TGC>TAC	p.C162Y		NM_001013743	NP_001013765	Q6GV28	TM225_HUMAN	transmembrane protein 225	162						integral to membrane				upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	3						AGACAACTTGCACTCTAGGAG	0.428													17	35					0	0	0	0
TMEM225	338661	broad.mit.edu	37	11	123756046	123756046	+	Silent	SNP	G	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr11:123756046G>A	uc001pzi.2	-	1	295	c.87C>T	c.(85-87)ACC>ACT	p.T29T		NM_001013743	NP_001013765	Q6GV28	TM225_HUMAN	transmembrane protein 225	29	Helical; (Potential).					integral to membrane				upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	3						ATTTATCTAAGGTGATTCCCA	0.423													27	45					0	0	0	0
OR10G9	219870	broad.mit.edu	37	11	123893799	123893799	+	Missense_Mutation	SNP	G	C	C			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr11:123893799G>C	uc010sad.1	+	1	80	c.80G>C	c.(79-81)GGA>GCA	p.G27A		NM_001001953	NP_001001953	Q8NGN4	O10G9_HUMAN	olfactory receptor, family 10, subfamily G,	27	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0399)		CCACTCTTTGGAATCTTCCTG	0.572													70	228					0	0	0	0
VWA5A	4013	broad.mit.edu	37	11	123988981	123988981	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr11:123988981C>G	uc001pzu.2	+	5	541	c.332C>G	c.(331-333)TCT>TGT	p.S111C	VWA5A_uc001pzr.2_Missense_Mutation_p.S111C|VWA5A_uc001pzs.2_Missense_Mutation_p.S111C|VWA5A_uc010sae.1_Missense_Mutation_p.S127C|VWA5A_uc001pzt.2_Missense_Mutation_p.S111C	NM_001130142	NP_001123614	O00534	VMA5A_HUMAN	BCSC-1 isoform 1	111	VIT.									upper_aerodigestive_tract(1)|ovary(1)	2						GATGTCTTCTCTTGCAATGTG	0.587													46	95					0	0	0	0
Unknown	0	broad.mit.edu	37	11	124120970	124120970	+	IGR	SNP	C	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr11:124120970C>T								OR8G2 (24660 upstream) : OR8D1 (58767 downstream)																							GATCTTCTTCCCCTCCTAAAG	0.393													12	31					0	0	0	0
CDON	50937	broad.mit.edu	37	11	125887193	125887193	+	Missense_Mutation	SNP	T	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr11:125887193T>A	uc009zbw.2	-	6	846	c.718A>T	c.(718-720)ACC>TCC	p.T240S	CDON_uc001qdc.3_Missense_Mutation_p.T240S|CDON_uc001qdd.3_RNA|CDON_uc009zbx.2_Missense_Mutation_p.T240S	NM_016952	NP_058648	Q4KMG0	CDON_HUMAN	surface glycoprotein, Ig superfamily member	240	Extracellular (Potential).|Ig-like C2-type 3.				cell adhesion|muscle cell differentiation|positive regulation of muscle cell differentiation	integral to membrane|plasma membrane	protein binding			ovary(3)|skin(2)|breast(1)	6	all_hematologic(175;0.177)	Breast(109;0.00157)|Lung NSC(97;0.0127)|all_lung(97;0.0133)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.51e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0604)		CACTCCAAGGTTACAGGGCTA	0.502													27	39					0	0	0	0
C1R	715	broad.mit.edu	37	12	7242032	7242032	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr12:7242032C>T	uc010sfy.1	-	5	684	c.625G>A	c.(625-627)GAG>AAG	p.E209K	C1R_uc010sfz.1_Missense_Mutation_p.E223K|C1R_uc010sga.1_Missense_Mutation_p.E175K	NM_001733	NP_001724	P00736	C1R_HUMAN	complement component 1, r subcomponent	209	CUB 2.				complement activation, classical pathway|innate immune response|proteolysis	extracellular region	calcium ion binding|serine-type endopeptidase activity				0					Abciximab(DB00054)|Adalimumab(DB00051)|Alefacept(DB00092)|Alemtuzumab(DB00087)|Basiliximab(DB00074)|Bevacizumab(DB00112)|Cetuximab(DB00002)|Daclizumab(DB00111)|Efalizumab(DB00095)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Natalizumab(DB00108)|Palivizumab(DB00110)|Rituximab(DB00073)|Tositumomab(DB00081)|Trastuzumab(DB00072)	CGAGGGTACTCCAGGCTGGAG	0.622													26	25					0	0	0	0
CLEC4C	170482	broad.mit.edu	37	12	7883448	7883448	+	Missense_Mutation	SNP	C	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr12:7883448C>A	uc001qtg.1	-	5	616	c.442G>T	c.(442-444)GGG>TGG	p.G148W	CLEC4C_uc001qth.1_Missense_Mutation_p.G148W|CLEC4C_uc001qti.1_Missense_Mutation_p.G117W	NM_130441	NP_569708	Q8WTT0	CLC4C_HUMAN	C-type lectin domain family 4, member C isoform	148	Extracellular (Potential).|C-type lectin.				innate immune response	integral to membrane	sugar binding			ovary(2)|skin(1)	3				Kidney(36;0.0915)		CGCCGACCCCCTGGATCTGAC	0.413													115	86					6.25423e-57	8.80804e-57	1	0
PRB4	5545	broad.mit.edu	37	12	11461215	11461215	+	Silent	SNP	G	C	C			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr12:11461215G>C	uc001qzf.1	-	3	736	c.702C>G	c.(700-702)GGC>GGG	p.G234G	PRB4_uc001qzt.2_Silent_p.G234G	NM_002723	NP_002714	P10163	PRB4_HUMAN	proline-rich protein BstNI subfamily 4	297						extracellular region				ovary(1)	1						TGGGTGGCCTGCCCCCTTGAG	0.577										HNSCC(22;0.051)			57	235					0	0	0	0
LST-3TM12	338821	broad.mit.edu	37	12	21205184	21205184	+	Missense_Mutation	SNP	A	G	G			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr12:21205184A>G	uc010sin.1	+	9	1345	c.1345A>G	c.(1345-1347)AAA>GAA	p.K449E	SLCO1B3_uc010sil.1_Intron|LST-3TM12_uc010sim.1_Missense_Mutation_p.K496E	NM_001009562	NP_001009562	Q71QF0	Q71QF0_HUMAN	liver-specific organic anion transporter 3TM12	449						membrane	transporter activity				0						AAGTGGTAATAAAGAGCCCAT	0.353													100	73					0	0	0	0
AQP2	359	broad.mit.edu	37	12	50344932	50344932	+	Missense_Mutation	SNP	A	G	G			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr12:50344932A>G	uc001rvn.2	+	1	409	c.319A>G	c.(319-321)ATC>GTC	p.I107V		NM_000486	NP_000477	P41181	AQP2_HUMAN	aquaporin 2	107	Helical; (Potential).				cellular response to copper ion|cellular response to mercury ion|excretion	apical plasma membrane|integral to membrane|transport vesicle membrane	glycerol transmembrane transporter activity|water channel activity			ovary(2)	2						GCTCCATGAGATCACGCCAGC	0.642													14	23					0	0	0	0
SCN8A	6334	broad.mit.edu	37	12	52159508	52159508	+	Silent	SNP	G	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr12:52159508G>A	uc001ryw.2	+	16	2776	c.2598G>A	c.(2596-2598)AAG>AAA	p.K866K	SCN8A_uc010snl.1_Silent_p.K731K|SCN8A_uc001ryy.2_Silent_p.K731K	NM_014191	NP_055006	Q9UQD0	SCN8A_HUMAN	sodium channel, voltage gated, type VIII, alpha	866	II.				axon guidance|myelination|peripheral nervous system development	cytoplasmic membrane-bounded vesicle|node of Ranvier	ATP binding|voltage-gated sodium channel activity			ovary(7)	7				BRCA - Breast invasive adenocarcinoma(357;0.181)	Lamotrigine(DB00555)	TGCTAATCAAGATTATTGGAA	0.428													21	20					0	0	0	0
HOXC9	3225	broad.mit.edu	37	12	54396287	54396287	+	Silent	SNP	G	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr12:54396287G>A	uc001sep.2	+	3	710	c.612G>A	c.(610-612)ACG>ACA	p.T204T	HOXC9_uc001seq.2_Silent_p.T204T	NM_006897	NP_008828	P31274	HXC9_HUMAN	homeobox C9	204	Homeobox.				multicellular organismal development	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			large_intestine(1)|pancreas(1)|skin(1)	3						AGTACCAGACGCTGGAACTGG	0.572													37	72					0	0	0	0
KIAA0748	9840	broad.mit.edu	37	12	55367305	55367305	+	Splice_Site	SNP	T	C	C			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr12:55367305T>C	uc001sgn.3	-	3	274	c.164_splice	c.e3-1	p.G55_splice	KIAA0748_uc001sgl.3_5'UTR|KIAA0748_uc001sgm.3_5'UTR|KIAA0748_uc010spb.1_5'UTR|KIAA0748_uc010spc.1_Splice_Site|KIAA0748_uc010spd.1_Splice_Site_p.G55_splice|KIAA0748_uc001sgo.3_Splice_Site	NM_001098815	NP_001092285	A2RU30	K0748_HUMAN	hypothetical protein LOC9840											ovary(1)|central_nervous_system(1)	2						TTGGATTCCCTAGAAAAGTCA	0.438													27	59					0	0	0	0
ARHGAP9	64333	broad.mit.edu	37	12	57870384	57870384	+	Silent	SNP	C	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr12:57870384C>T	uc001sod.2	-	10	1420	c.1227G>A	c.(1225-1227)GGG>GGA	p.G409G	ARHGAP9_uc001sny.2_5'Flank|ARHGAP9_uc001snz.2_Silent_p.G154G|ARHGAP9_uc001soa.2_Silent_p.G8G|ARHGAP9_uc001sob.2_Silent_p.G338G|ARHGAP9_uc001soc.2_Silent_p.G338G|ARHGAP9_uc001soe.1_Silent_p.G417G	NM_032496	NP_115885	Q9BRR9	RHG09_HUMAN	Rho GTPase activating protein 9 isoform 1	338	PH.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|protein binding			lung(1)	1			GBM - Glioblastoma multiforme(3;3.37e-34)			TGAGCTTGCGCCCCCCTTGGG	0.562													70	150					0	0	0	0
Unknown	0	broad.mit.edu	37	12	80696534	80696534	+	IGR	SNP	A	C	C			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr12:80696534A>C								PPP1R12A (367299 upstream) : PTPRQ (141592 downstream)																							GAAGACAACTATTCATATCAA	0.353													5	6					0	0	0	0
DNAH10	196385	broad.mit.edu	37	12	124289536	124289536	+	Missense_Mutation	SNP	A	G	G			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr12:124289536A>G	uc001uft.3	+	17	2607	c.2582A>G	c.(2581-2583)TAC>TGC	p.Y861C	DNAH10_uc010tav.1_Missense_Mutation_p.Y403C|DNAH10_uc010taw.1_Missense_Mutation_p.Y346C	NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	861	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		GCCTCCTACTACAAATACTGG	0.468													24	47					0	0	0	0
NCOR2	9612	broad.mit.edu	37	12	124846798	124846798	+	Missense_Mutation	SNP	T	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr12:124846798T>A	uc010tba.1	-	22	3091	c.2974A>T	c.(2974-2976)ACC>TCC	p.T992S	NCOR2_uc010tay.1_Missense_Mutation_p.T991S|NCOR2_uc010taz.1_Missense_Mutation_p.T975S|NCOR2_uc010tbb.1_Missense_Mutation_p.T992S|NCOR2_uc010tbc.1_Missense_Mutation_p.T974S|NCOR2_uc001ugj.1_Missense_Mutation_p.T992S	NM_001077261	NP_001070729	Q9Y618	NCOR2_HUMAN	nuclear receptor co-repressor 2 isoform 2	992					cellular lipid metabolic process|negative regulation of transcription from RNA polymerase II promoter|regulation of cellular ketone metabolic process by negative regulation of transcription from an RNA polymerase II promoter|transcription, DNA-dependent	nuclear body|nucleus|transcriptional repressor complex	DNA binding|histone deacetylase binding|Notch binding|protein N-terminus binding|transcription corepressor activity			skin(3)|ovary(1)	4	all_neural(191;0.0804)|Medulloblastoma(191;0.163)			Epithelial(86;3.99e-05)|OV - Ovarian serous cystadenocarcinoma(86;9.14e-05)|all cancers(50;0.000402)|BRCA - Breast invasive adenocarcinoma(302;0.0764)		GCTGGCTTGGTGGGAGCTGCG	0.667													13	21					0	0	0	0
ULK1	8408	broad.mit.edu	37	12	132396562	132396562	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr12:132396562C>T	uc001uje.2	+	13	1292	c.1024C>T	c.(1024-1026)CGG>TGG	p.R342W		NM_003565	NP_003556	O75385	ULK1_HUMAN	Unc-51-like kinase 1	342	Interaction with GABARAP and GABARAPL2.				autophagy|protein localization|regulation of autophagy	autophagic vacuole|cytosol|pre-autophagosomal structure|ULK1-ATG13-FIP200 complex	ATP binding|protein complex binding|protein serine/threonine kinase activity			ovary(1)|lung(1)|central_nervous_system(1)|skin(1)	4	all_neural(191;0.0982)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;2.07e-08)|Epithelial(86;2.56e-07)|all cancers(50;3.01e-07)		GCACAGCTCCCGGGACTCTGG	0.652													19	30					0	0	0	0
DKFZp686A1627	266695	broad.mit.edu	37	13	19625370	19625370	+	RNA	SNP	A	G	G	rs7994268	by1000genomes	TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr13:19625370A>G	uc001umb.1	-	8		c.3153T>C				NR_002801				Homo sapiens mRNA; cDNA DKFZp686A1627 (from clone DKFZp686A1627).												0						TGTCCTTCACACAGATCAGGC	0.567													5	18					0	0	0	0
MTMR6	9107	broad.mit.edu	37	13	25825793	25825793	+	Silent	SNP	T	C	C			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr13:25825793T>C	uc001uqf.3	-	13	1918	c.1599A>G	c.(1597-1599)CTA>CTG	p.L533L	MTMR6_uc001uqe.1_Silent_p.L533L	NM_004685	NP_004676	Q9Y217	MTMR6_HUMAN	myotubularin related protein 6	533						cytoplasm|nuclear envelope	calcium-activated potassium channel activity|protein serine/threonine phosphatase activity|protein tyrosine phosphatase activity			ovary(2)|skin(2)	4		Lung SC(185;0.0225)|Breast(139;0.0351)		all cancers(112;0.00927)|Epithelial(112;0.0474)|OV - Ovarian serous cystadenocarcinoma(117;0.164)		TTACAGATTCTAGGTCTTTAA	0.274													5	3					0	0	0	0
TRPC4	7223	broad.mit.edu	37	13	38320428	38320428	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr13:38320428G>T	uc001uws.2	-	3	778	c.543C>A	c.(541-543)TGC>TGA	p.C181*	TRPC4_uc010abv.2_5'UTR|TRPC4_uc001uwt.2_Nonsense_Mutation_p.C181*|TRPC4_uc010tey.1_Nonsense_Mutation_p.C181*|TRPC4_uc010abw.2_Intron|TRPC4_uc010abx.2_Nonsense_Mutation_p.C181*|TRPC4_uc010aby.2_Nonsense_Mutation_p.C181*	NM_016179	NP_057263	Q9UBN4	TRPC4_HUMAN	transient receptor potential cation channel,	181	Cytoplasmic (Potential).				axon guidance|calcium ion import	basolateral plasma membrane|calcium channel complex|cell surface|cortical cytoskeleton	beta-catenin binding|cadherin binding|store-operated calcium channel activity			ovary(3)|skin(2)|breast(1)	6				all cancers(112;1.92e-08)|Epithelial(112;5.04e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.000677)|GBM - Glioblastoma multiforme(144;0.00623)|BRCA - Breast invasive adenocarcinoma(63;0.0126)		AACTGGACACGCATTCCACAC	0.507													36	19					6.97489e-18	8.71002e-18	1	0
TRPC4	7223	broad.mit.edu	37	13	38357115	38357115	+	Missense_Mutation	SNP	T	C	C			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr13:38357115T>C	uc001uws.2	-	2	591	c.356A>G	c.(355-357)AAA>AGA	p.K119R	TRPC4_uc010abv.2_5'UTR|TRPC4_uc001uwt.2_Missense_Mutation_p.K119R|TRPC4_uc010tey.1_Missense_Mutation_p.K119R|TRPC4_uc010abw.2_Missense_Mutation_p.K119R|TRPC4_uc010abx.2_Missense_Mutation_p.K119R|TRPC4_uc010aby.2_Missense_Mutation_p.K119R	NM_016179	NP_057263	Q9UBN4	TRPC4_HUMAN	transient receptor potential cation channel,	119	ANK 3.|Cytoplasmic (Potential).|Multimerization domain (By similarity).				axon guidance|calcium ion import	basolateral plasma membrane|calcium channel complex|cell surface|cortical cytoskeleton	beta-catenin binding|cadherin binding|store-operated calcium channel activity			ovary(3)|skin(2)|breast(1)	6				all cancers(112;1.92e-08)|Epithelial(112;5.04e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.000677)|GBM - Glioblastoma multiforme(144;0.00623)|BRCA - Breast invasive adenocarcinoma(63;0.0126)		ACTAGGTTTTTTGTGGTTCAA	0.299													26	18					0	0	0	0
AKAP11	11215	broad.mit.edu	37	13	42891737	42891737	+	Silent	SNP	A	G	G			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr13:42891737A>G	uc001uys.1	+	12	5653	c.5478A>G	c.(5476-5478)CTA>CTG	p.L1826L		NM_016248	NP_057332	Q9UKA4	AKA11_HUMAN	A-kinase anchor protein 11	1826					intracellular protein kinase cascade	microtubule organizing center	protein kinase A binding|protein phosphatase 1 binding			ovary(1)|central_nervous_system(1)	2		Lung NSC(96;1.86e-05)|Prostate(109;0.0165)|Lung SC(185;0.0262)|Breast(139;0.0707)|Hepatocellular(98;0.114)		OV - Ovarian serous cystadenocarcinoma(117;0.000365)|GBM - Glioblastoma multiforme(144;0.00116)|BRCA - Breast invasive adenocarcinoma(63;0.19)		ACCCCCAGCTAAGGATTATTC	0.393													32	28					0	0	0	0
ZC3H13	23091	broad.mit.edu	37	13	46594641	46594641	+	Missense_Mutation	SNP	T	C	C			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr13:46594641T>C	uc010tfw.1	-	4	397	c.391A>G	c.(391-393)AAG>GAG	p.K131E	ZC3H13_uc001vas.1_Missense_Mutation_p.K131E|ZC3H13_uc001vat.1_Missense_Mutation_p.K131E	NM_015070	NP_055885	Q5T200	ZC3HD_HUMAN	zinc finger CCCH-type containing 13	131							nucleic acid binding|zinc ion binding			ovary(1)|lung(1)	2		Lung NSC(96;7.26e-05)|Breast(56;0.000118)|Prostate(109;0.00217)|Hepatocellular(98;0.0207)|Lung SC(185;0.0262)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;4.18e-05)		GTTCTTTCCTTAGTGATTTTT	0.299													16	13					0	0	0	0
EFNB2	1948	broad.mit.edu	37	13	107145598	107145598	+	Silent	SNP	C	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr13:107145598C>T	uc001vqi.2	-	5	817	c.792G>A	c.(790-792)ACG>ACA	p.T264T		NM_004093	NP_004084	P52799	EFNB2_HUMAN	ephrin B2 precursor	264	Cytoplasmic (Potential).				cell differentiation|cell-cell signaling|interspecies interaction between organisms|nervous system development	integral to plasma membrane	ephrin receptor binding			ovary(1)	1	Lung NSC(43;0.015)|all_neural(89;0.0741)|Lung SC(71;0.14)|Medulloblastoma(90;0.169)					ACAGCGTGGTCGTGTGCTGCG	0.522													20	24					0	0	0	0
ANKRD10	55608	broad.mit.edu	37	13	111567112	111567112	+	Missense_Mutation	SNP	T	C	C			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr13:111567112T>C	uc001vrn.2	-	1	305	c.170A>G	c.(169-171)TAT>TGT	p.Y57C	ANKRD10_uc001vro.1_Missense_Mutation_p.Y57C|ANKRD10_uc001vrp.1_Missense_Mutation_p.Y57C	NM_017664	NP_060134	Q9NXR5	ANR10_HUMAN	ankyrin repeat domain 10	57	ANK 2.									central_nervous_system(1)	1	all_lung(23;3.61e-05)|Lung NSC(43;0.00144)|Lung SC(71;0.0753)|all_neural(89;0.077)|Medulloblastoma(90;0.148)		all cancers(43;0.0882)|BRCA - Breast invasive adenocarcinoma(86;0.188)|Lung(89;0.208)			CGTCCAGCCATAGAAGGAGTC	0.677													6	3					0	0	0	0
OR4K5	79317	broad.mit.edu	37	14	20389165	20389165	+	Missense_Mutation	SNP	G	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr14:20389165G>T	uc010tkw.1	+	1	400	c.400G>T	c.(400-402)GTC>TTC	p.V134F		NM_001005483	NP_001005483	Q8NGD3	OR4K5_HUMAN	olfactory receptor, family 4, subfamily K,	134	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		ATACTATGTGGTCATCATGAG	0.443													66	57					1.34159e-35	1.84333e-35	1	0
NDRG2	57447	broad.mit.edu	37	14	21487854	21487854	+	Silent	SNP	G	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr14:21487854G>A	uc001vyy.2	-	11	810	c.660C>T	c.(658-660)ATC>ATT	p.I220I	NDRG2_uc010tll.1_Silent_p.I216I|NDRG2_uc001vyt.2_Silent_p.I133I|NDRG2_uc001vyu.2_Silent_p.I177I|NDRG2_uc001vyv.2_Silent_p.I206I|NDRG2_uc001vyw.2_Silent_p.I206I|NDRG2_uc001vzb.2_Silent_p.I160I|NDRG2_uc001vyx.2_Silent_p.I220I|NDRG2_uc001vza.2_Silent_p.I206I|NDRG2_uc001vyz.2_Silent_p.I206I|NDRG2_uc001vzc.2_Silent_p.I206I|NDRG2_uc001vze.2_Silent_p.I220I|NDRG2_uc001vzd.2_Silent_p.I220I|NDRG2_uc001vzg.2_Silent_p.I206I|NDRG2_uc001vzf.2_Silent_p.I206I|NDRG2_uc010aig.2_Silent_p.I220I	NM_201540	NP_963834	Q9UN36	NDRG2_HUMAN	N-myc downstream-regulated gene 2 isoform a	220					cell differentiation|nervous system development	centrosome|cytosol|Golgi apparatus|nucleus|perinuclear region of cytoplasm				ovary(1)|breast(1)	2	all_cancers(95;0.00185)		OV - Ovarian serous cystadenocarcinoma(11;6.85e-11)|Epithelial(56;9.49e-09)|all cancers(55;3.84e-08)	GBM - Glioblastoma multiforme(265;0.0191)		CATGTGTAATGATATTTCTGT	0.403													18	14					0	0	0	0
C14orf135	64430	broad.mit.edu	37	14	60592508	60592508	+	Silent	SNP	A	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr14:60592508A>T	uc001xer.3	+	9	3054	c.2532A>T	c.(2530-2532)CCA>CCT	p.P844P	C14orf135_uc001xeq.2_Silent_p.P844P|C14orf135_uc010apm.2_RNA	NM_022495	NP_071940	Q63HM2	CN135_HUMAN	hepatitis C virus F protein-binding protein 2	1078						integral to membrane				ovary(2)	2		Myeloproliferative disorder(585;0.163)		OV - Ovarian serous cystadenocarcinoma(108;0.127)		AAGAAAAGCCATACTTGTTTT	0.299													12	6					0	0	0	0
Unknown	0	broad.mit.edu	37	14	66480334	66480334	+	Silent	SNP	C	T	T	rs1807440	by1000genomes	TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr14:66480334C>T	uc001xit.2	-	1	299	c.174G>A	c.(172-174)ACG>ACA	p.T58T						SubName: Full=Nuclease sensitive element binding protein-1;																		ACCATTTTACCGTTCCCAAAA	0.557													8	25					0	0	0	0
LTBP2	4053	broad.mit.edu	37	14	75022287	75022287	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr14:75022287C>T	uc001xqa.2	-	4	1327	c.940G>A	c.(940-942)GCC>ACC	p.A314T		NM_000428	NP_000419	Q14767	LTBP2_HUMAN	latent transforming growth factor beta binding	314					protein secretion|protein targeting|transforming growth factor beta receptor signaling pathway	extracellular space|proteinaceous extracellular matrix	calcium ion binding|growth factor binding			liver(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(234;0.00219)|READ - Rectum adenocarcinoma(1;0.0649)		GGGGGCAGGGCGTTGGAAGAG	0.652													18	74					0	0	0	0
NRXN3	9369	broad.mit.edu	37	14	79181141	79181141	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr14:79181141G>A	uc001xun.2	+	5	1075	c.584G>A	c.(583-585)AGT>AAT	p.S195N	NRXN3_uc001xum.1_RNA|NRXN3_uc010asv.1_Missense_Mutation_p.S329N	NM_004796	NP_004787	Q9Y4C0	NRX3A_HUMAN	neurexin 3 isoform 1 precursor	568	Extracellular (Potential).|Laminin G-like 3.				axon guidance|cell adhesion	integral to plasma membrane	metal ion binding|receptor activity			ovary(3)|upper_aerodigestive_tract(2)|pancreas(2)|central_nervous_system(1)|breast(1)|skin(1)	10		Renal(4;0.00876)		BRCA - Breast invasive adenocarcinoma(234;0.00544)|Kidney(3;0.029)|KIRC - Kidney renal clear cell carcinoma(182;0.223)		TTCACCGCCAGTGGGGAGAGC	0.572													80	89					0	0	0	0
KCNK10	54207	broad.mit.edu	37	14	88658719	88658719	+	Silent	SNP	G	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr14:88658719G>T	uc001xwo.2	-	5	1159	c.702C>A	c.(700-702)ATC>ATA	p.I234I	KCNK10_uc001xwm.2_Silent_p.I239I|KCNK10_uc001xwn.2_Silent_p.I239I	NM_021161	NP_066984	P57789	KCNKA_HUMAN	potassium channel, subfamily K, member 10	234	Helical; (Potential).				signal transduction	integral to membrane	potassium channel activity|voltage-gated ion channel activity			ovary(2)|skin(2)|pancreas(1)	5						GGATGGTTGAGATGACCCGGA	0.493													46	47					1.42923e-14	1.72118e-14	1	0
SERPINA10	51156	broad.mit.edu	37	14	94754646	94754646	+	Silent	SNP	T	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr14:94754646T>A	uc001yct.2	-	3	1435	c.969A>T	c.(967-969)ACA>ACT	p.T323T	SERPINA10_uc001ycu.3_Silent_p.T323T	NM_016186	NP_057270	Q9UK55	ZPI_HUMAN	serine (or cysteine) proteinase inhibitor, clade	323					regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)|skin(1)	3		all_cancers(154;0.105)		Epithelial(152;0.135)|COAD - Colon adenocarcinoma(157;0.207)|all cancers(159;0.221)		TTCTGAGCCATGTCTCCACCA	0.493													33	27					0	0	0	0
C14orf49	161176	broad.mit.edu	37	14	95918720	95918720	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr14:95918720C>T	uc001yei.3	-	6	1153	c.1138G>A	c.(1138-1140)GCA>ACA	p.A380T	C14orf49_uc010avi.2_Missense_Mutation_p.A380T|C14orf49_uc001yej.1_Missense_Mutation_p.A380T	NM_152592	NP_689805	Q6ZMZ3	SYNE3_HUMAN	nesprin-3	380	Cytoplasmic (Potential).				cytoskeletal anchoring at nuclear membrane	integral to membrane|nuclear outer membrane|SUN-KASH complex	actin binding			central_nervous_system(1)	1		all_cancers(154;0.0937)		COAD - Colon adenocarcinoma(157;0.245)		GCCCGTGTTGCCTGCAGCACA	0.652											OREG0022900	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	25	26					0	0	0	0
NF1P1	440225	broad.mit.edu	37	15	22145418	22145418	+	RNA	SNP	G	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr15:22145418G>A	uc010tzs.1	-	2		c.265C>T								Human NF1-related locus DNA in A9 mouse DNA background.												0						CATCACTATAGGGAGCTCTCC	0.408													18	42					0	0	0	0
OR4M2	390538	broad.mit.edu	37	15	22368660	22368660	+	Missense_Mutation	SNP	G	C	C			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr15:22368660G>C	uc010tzu.1	+	1	85	c.85G>C	c.(85-87)GTT>CTT	p.V29L	LOC727924_uc001yua.2_Intron|LOC727924_uc001yub.1_Intron|OR4N4_uc001yuc.1_Intron	NM_001004719	NP_001004719	Q8NGB6	OR4M2_HUMAN	olfactory receptor, family 4, subfamily M,	29	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		all_cancers(20;1.94e-20)|all_epithelial(15;3.94e-18)|Lung NSC(15;8.53e-15)|all_lung(15;2.87e-14)|Breast(32;0.00519)|Colorectal(260;0.101)	GBM - Glioblastoma multiforme(6;0.124)	all cancers(64;1.64e-11)|Epithelial(43;5.81e-10)|BRCA - Breast invasive adenocarcinoma(123;0.000255)|Kidney(6;0.00736)|KIRC - Kidney renal clear cell carcinoma(6;0.0135)|GBM - Glioblastoma multiforme(186;0.0963)		AGTCCTATTTGTTATATTTCT	0.393													95	296					0	0	0	0
MKRN3	7681	broad.mit.edu	37	15	23812141	23812141	+	Silent	SNP	G	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr15:23812141G>A	uc001ywh.3	+	1	1688	c.1212G>A	c.(1210-1212)GCG>GCA	p.A404A	MKRN3_uc001ywi.2_Intron|MKRN3_uc010ayi.1_Intron	NM_005664	NP_005655	Q13064	MKRN3_HUMAN	makorin ring finger protein 3	404	C3H1-type 3.					ribonucleoprotein complex	ligase activity|nucleic acid binding|zinc ion binding			lung(6)|large_intestine(2)|ovary(2)	10		all_cancers(20;8.44e-25)|all_epithelial(15;3.69e-22)|Lung NSC(15;2.96e-18)|all_lung(15;2.8e-17)|Breast(32;0.000353)|Colorectal(260;0.14)		all cancers(64;3.02e-06)|Epithelial(43;1.94e-05)|BRCA - Breast invasive adenocarcinoma(123;0.0012)		GGTATTTTGCGGAAGGCAGGG	0.522													33	116					0	0	0	0
C15orf2	23742	broad.mit.edu	37	15	24923265	24923265	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr15:24923265C>G	uc001ywo.2	+	1	2725	c.2251C>G	c.(2251-2253)CAG>GAG	p.Q751E		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	751					cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		TTTGCCTGCACAGTCAGTCAG	0.562													194	114					0	0	0	0
ATP10A	57194	broad.mit.edu	37	15	25947134	25947134	+	Missense_Mutation	SNP	C	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr15:25947134C>A	uc010ayu.2	-	13	2795	c.2689G>T	c.(2689-2691)GTC>TTC	p.V897F		NM_024490	NP_077816	O60312	AT10A_HUMAN	ATPase, class V, type 10A	897	Cytoplasmic (Potential).				ATP biosynthetic process|regulation of cell shape	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			pancreas(2)|ovary(1)|breast(1)|liver(1)	5		all_cancers(20;5.16e-25)|all_lung(180;1.51e-14)|Acute lymphoblastic leukemia(1;2.53e-05)|all_hematologic(1;0.000267)|Breast(32;0.00125)		all cancers(64;9.48e-07)|Epithelial(43;1.69e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0252)|Lung(196;0.244)		GCAATGTTGACAGCTGTTTCT	0.532													50	150					1.57914e-17	1.96714e-17	1	0
RYR3	6263	broad.mit.edu	37	15	33916022	33916022	+	Missense_Mutation	SNP	T	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr15:33916022T>A	uc001zhi.2	+	20	2442	c.2372T>A	c.(2371-2373)ATG>AAG	p.M791K	RYR3_uc010bar.2_Missense_Mutation_p.M791K	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	791	Cytoplasmic (By similarity).|B30.2/SPRY 1.				cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		CGTTTCCTGATGGGTGGACGT	0.423													34	33					0	0	0	0
RYR3	6263	broad.mit.edu	37	15	33926903	33926903	+	Silent	SNP	G	A	A	rs2291733		TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr15:33926903G>A	uc001zhi.2	+	25	3214	c.3144G>A	c.(3142-3144)GGG>GGA	p.G1048G	RYR3_uc010bar.2_Silent_p.G1048G	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	1048	2.|B30.2/SPRY 2.|Cytoplasmic (By similarity).|4 X approximate repeats.				cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		TTGGTTACGGGTATAACATTG	0.483													69	90					0	0	0	0
ZFP106	64397	broad.mit.edu	37	15	42742648	42742648	+	Missense_Mutation	SNP	C	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr15:42742648C>A	uc001zpw.2	-	2	2088	c.1753G>T	c.(1753-1755)GCA>TCA	p.A585S	ZFP106_uc001zpu.2_5'Flank|ZFP106_uc001zpv.2_Intron|ZFP106_uc001zpx.2_Intron|ZFP106_uc010udh.1_Missense_Mutation_p.A368S|ZFP106_uc001zpy.1_Missense_Mutation_p.A608S	NM_022473	NP_071918	Q9H2Y7	ZF106_HUMAN	zinc finger protein 106 homolog	585						nucleolus	zinc ion binding			central_nervous_system(2)|ovary(1)	3		all_cancers(109;1.63e-12)|all_epithelial(112;3.97e-11)|Lung NSC(122;2.04e-07)|all_lung(180;8.31e-07)|Melanoma(134;0.091)		GBM - Glioblastoma multiforme(94;8.6e-07)		TCTTCTAGTGCGTGCACTTGA	0.388													111	95					1.06059e-47	1.48541e-47	1	0
SHC4	399694	broad.mit.edu	37	15	49254847	49254847	+	Silent	SNP	G	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr15:49254847G>A	uc001zxb.1	-	1	795	c.366C>T	c.(364-366)AGC>AGT	p.S122S		NM_203349	NP_976224	Q6S5L8	SHC4_HUMAN	rai-like protein	122	CH2.				intracellular signal transduction	cell junction|postsynaptic membrane				ovary(3)|pancreas(2)	5		all_lung(180;0.00466)		all cancers(107;9.4e-08)|GBM - Glioblastoma multiforme(94;5.94e-07)		CTGGGTCCCGGCTTTCCTGGA	0.597													15	41					0	0	0	0
PRTG	283659	broad.mit.edu	37	15	55933315	55933315	+	Silent	SNP	G	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr15:55933315G>A	uc002adg.2	-	12	2181	c.2133C>T	c.(2131-2133)TGC>TGT	p.C711C		NM_173814	NP_776175	Q2VWP7	PRTG_HUMAN	protogenin precursor	711					multicellular organismal development	integral to membrane				large_intestine(1)|ovary(1)|skin(1)	3				all cancers(107;0.00891)|GBM - Glioblastoma multiforme(80;0.135)		ACTTACACACGCATCCTGGAG	0.448													7	17					0	0	0	0
MYO1E	4643	broad.mit.edu	37	15	59553688	59553688	+	Silent	SNP	T	C	C			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr15:59553688T>C	uc002aga.2	-	3	540	c.168A>G	c.(166-168)TTA>TTG	p.L56L		NM_004998	NP_004989	Q12965	MYO1E_HUMAN	myosin IE	56	Myosin head-like.				actin filament-based movement	myosin complex	actin binding|ATP binding|ATPase activity, coupled|calmodulin binding|microfilament motor activity			central_nervous_system(3)	3				all cancers(107;0.207)		TGACTGAGATTAATACAGATC	0.338													53	33					0	0	0	0
GABARAPL3	23766	broad.mit.edu	37	15	90892293	90892293	+	RNA	SNP	C	T	T	rs2589973	by1000genomes	TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr15:90892293C>T	uc010uqf.1	-	1		c.387G>A				NR_028287				Homo sapiens GABA-A receptor-associated protein mRNA, complete cds.												0						GTACTTCCTCCTGTCCAGATC	0.493													6	17					0	0	0	0
IGF1R	3480	broad.mit.edu	37	15	99460071	99460071	+	Missense_Mutation	SNP	G	C	C			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr15:99460071G>C	uc002bul.2	+	10	2217	c.2167G>C	c.(2167-2169)GAG>CAG	p.E723Q	IGF1R_uc010urq.1_Missense_Mutation_p.E723Q|IGF1R_uc010bon.2_Missense_Mutation_p.E723Q|IGF1R_uc010urr.1_Missense_Mutation_p.E173Q	NM_000875	NP_000866	P08069	IGF1R_HUMAN	insulin-like growth factor 1 receptor precursor	723					anti-apoptosis|immune response|insulin receptor signaling pathway|phosphatidylinositol-mediated signaling|positive regulation of cell migration|positive regulation of cell proliferation|positive regulation of DNA replication|protein autophosphorylation|protein tetramerization	microsome	ATP binding|identical protein binding|insulin binding|insulin receptor binding|insulin receptor substrate binding|insulin-like growth factor I binding|insulin-like growth factor receptor activity|metal ion binding|phosphatidylinositol 3-kinase binding			lung(3)|kidney(3)|ovary(1)|central_nervous_system(1)	8	all_cancers(4;4.17e-14)|all_epithelial(3;4.34e-15)|Lung NSC(78;0.00175)|all_lung(78;0.00351)|Melanoma(26;0.00505)|Medulloblastoma(229;0.163)		Epithelial(2;1.94e-12)|all cancers(5;6.83e-11)|BRCA - Breast invasive adenocarcinoma(2;2.88e-09)|OV - Ovarian serous cystadenocarcinoma(32;0.00261)		Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Mecasermin(DB01277)	CAAAGTCTTTGAGAATTTCCT	0.542													21	27					0	0	0	0
Unknown	0	broad.mit.edu	37	15	102296140	102296140	+	5'Flank	SNP	C	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr15:102296140C>T	uc002bxr.2	-						uc010usk.1_5'Flank|uc002bxs.2_5'Flank|uc002bxu.1_5'Flank|uc002bxv.1_5'Flank|uc002bxw.1_5'Flank|uc002bxy.1_5'Flank|uc002byb.1_5'Flank|uc002byc.2_5'Flank|uc002byh.2_5'Flank|uc002byj.2_5'Flank|uc002byl.1_5'Flank|uc010usl.1_5'Flank|uc010usn.1_5'Flank|uc002byq.2_5'Flank|uc002byu.2_RNA|uc002byv.2_RNA|uc002byx.3_5'Flank|uc002bza.2_5'Flank|uc002bzb.2_5'Flank|uc002bzc.1_5'Flank|uc002bzd.2_5'Flank|uc002bze.2_5'Flank|uc002bzg.2_5'Flank|uc002bzi.1_5'Flank|uc002bzj.2_5'Flank|uc002bzl.2_5'Flank|uc002bzm.2_5'Flank|uc002bzo.2_5'Flank|uc002bzp.2_5'Flank|uc002bzq.2_5'Flank|uc002bzr.2_5'Flank|uc002bzt.2_5'Flank|uc010usp.1_5'Flank|uc002bzu.2_5'Flank|uc002bzv.3_5'Flank|uc010usq.1_5'Flank|uc010usr.1_5'Flank|uc010uss.1_5'Flank|uc002bzz.2_5'Flank|uc002cab.2_5'Flank|uc002cac.2_5'Flank|uc010ust.1_5'Flank|uc002cad.2_5'Flank|uc010usu.1_5'Flank|uc002cae.2_5'Flank|uc002caf.2_5'Flank					DQ598276																		GTCCAACCTGCACTCGCGTGG	0.602													7	6					0	0	0	0
TELO2	9894	broad.mit.edu	37	16	1544453	1544453	+	Silent	SNP	C	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr16:1544453C>T	uc002cly.2	+	2	462	c.171C>T	c.(169-171)GCC>GCT	p.A57A	TELO2_uc010uvg.1_Silent_p.A57A	NM_016111	NP_057195	Q9Y4R8	TELO2_HUMAN	TEL2, telomere maintenance 2, homolog	57						chromosome, telomeric region|cytoplasm|membrane|nucleus	protein binding				0		Hepatocellular(780;0.219)				TTGCCTCGGCCCACTTCTCGC	0.647											OREG0023547	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	94	170					0	0	0	0
A2BP1	54715	broad.mit.edu	37	16	7568151	7568151	+	Silent	SNP	T	C	C			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr16:7568151T>C	uc002cys.2	+	5	1018	c.30T>C	c.(28-30)GGT>GGC	p.G10G	A2BP1_uc010buf.1_Silent_p.G10G|A2BP1_uc002cyr.1_Silent_p.G10G|A2BP1_uc002cyt.2_Silent_p.G10G|A2BP1_uc010uxz.1_Silent_p.G53G|A2BP1_uc010uya.1_Silent_p.G46G|A2BP1_uc002cyv.1_Silent_p.G10G|A2BP1_uc010uyb.1_Silent_p.G10G|A2BP1_uc002cyw.2_Silent_p.G30G|A2BP1_uc002cyy.2_Silent_p.G30G|A2BP1_uc002cyx.2_Silent_p.G30G|A2BP1_uc010uyc.1_Silent_p.G30G	NM_018723	NP_061193	Q9NWB1	RFOX1_HUMAN	ataxin 2-binding protein 1 isoform 4	10					mRNA processing|RNA splicing|RNA transport	nucleus|trans-Golgi network	nucleotide binding|protein C-terminus binding|RNA binding				0		all_cancers(2;4.54e-52)|Colorectal(2;6.95e-44)|all_epithelial(2;1.15e-37)|Lung NSC(2;0.000289)|all_lung(2;0.00148)|Myeloproliferative disorder(2;0.0122)|Medulloblastoma(2;0.0354)|all_neural(2;0.0381)|all_hematologic(2;0.0749)|Renal(2;0.0758)|Melanoma(2;0.211)		Colorectal(1;3.55e-51)|COAD - Colon adenocarcinoma(2;1.92e-46)|all cancers(1;5.36e-16)|Epithelial(1;3.98e-15)|READ - Rectum adenocarcinoma(2;3.71e-05)|GBM - Glioblastoma multiforme(1;0.0499)		TTTTTCAGGGTAATCAGGAAG	0.587													101	224					0	0	0	0
ZC3H7A	29066	broad.mit.edu	37	16	11862237	11862237	+	Missense_Mutation	SNP	G	A	A	rs147099217		TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr16:11862237G>A	uc002dbk.2	-	11	1492	c.1294C>T	c.(1294-1296)CCA>TCA	p.P432S	ZC3H7A_uc002dbj.2_5'Flank|ZC3H7A_uc002dbl.2_Missense_Mutation_p.P432S|ZC3H7A_uc002dbm.1_Missense_Mutation_p.P342S	NM_014153	NP_054872	Q8IWR0	Z3H7A_HUMAN	zinc finger CCCH-type containing 7A	432						nucleus	nucleic acid binding|zinc ion binding			ovary(2)|pancreas(1)|skin(1)	4						GGATGTCTTGGAGTCACTGAT	0.413													41	95					0	0	0	0
NOMO1	23420	broad.mit.edu	37	16	14976452	14976452	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr16:14976452C>T	uc002dcv.2	+	26	3095	c.3029C>T	c.(3028-3030)CCG>CTG	p.P1010L		NM_014287	NP_055102	Q15155	NOMO1_HUMAN	nodal modulator 1 precursor	1010	Extracellular (Potential).					integral to membrane	carbohydrate binding|carboxypeptidase activity|protein binding			ovary(1)	1						TTTTTGCAGCCGGGATGTGTG	0.547													66	141					0	0	0	0
GPRC5B	51704	broad.mit.edu	37	16	19883697	19883697	+	Silent	SNP	G	T	T	rs144341472		TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr16:19883697G>T	uc002dgt.2	-	2	579	c.471C>A	c.(469-471)CCC>CCA	p.P157P	GPRC5B_uc010vav.1_Silent_p.P183P	NM_016235	NP_057319	Q9NZH0	GPC5B_HUMAN	G protein-coupled receptor, family C, group 5,	157	Cytoplasmic (Potential).									lung(1)|breast(1)|skin(1)	3						GCCAGCCCGCGGGGCCCGTGC	0.687													18	60					8.28177e-16	1.01667e-15	1	0
ACSM2A	123876	broad.mit.edu	37	16	20497919	20497919	+	Silent	SNP	C	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr16:20497919C>A	uc010bwe.2	+	15	1892	c.1653C>A	c.(1651-1653)CCC>CCA	p.P551P	ACSM2A_uc002dhf.3_Silent_p.P551P|ACSM2A_uc002dhg.3_Silent_p.P551P|ACSM2A_uc010vay.1_Silent_p.P472P|ACSM2A_uc002dhh.3_Silent_p.P181P|uc002dhi.1_5'Flank	NM_001010845	NP_001010845	Q08AH3	ACS2A_HUMAN	acyl-CoA synthetase medium-chain family member	551					fatty acid metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|metal ion binding			skin(2)|breast(1)	3						TGAACCTGCCCAAGACTGTCA	0.478													77	168					1.42074e-37	1.96271e-37	1	0
TAOK2	9344	broad.mit.edu	37	16	29990342	29990342	+	Missense_Mutation	SNP	G	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr16:29990342G>T	uc002dva.1	+	6	1183	c.400G>T	c.(400-402)GGG>TGG	p.G134W	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|TAOK2_uc002dvb.1_Missense_Mutation_p.G134W|TAOK2_uc002dvc.1_Missense_Mutation_p.G134W|TAOK2_uc010bzm.1_Missense_Mutation_p.G134W|TAOK2_uc002dvd.1_5'Flank	NM_016151	NP_057235	Q9UL54	TAOK2_HUMAN	TAO kinase 2 isoform 2	134	Protein kinase.				actin cytoskeleton organization|activation of MAPKK activity|apoptosis|cell migration|focal adhesion assembly|positive regulation of JNK cascade|protein targeting to membrane|regulation of cell growth|regulation of cell shape|response to stress	cytoplasmic vesicle membrane|cytoskeleton|dendrite|integral to membrane|nucleolus	ATP binding|protein serine/threonine kinase activity			ovary(1)	1						TGTGACCCACGGGGCGCTTCA	0.587													63	176					3.82405e-32	5.17012e-32	1	0
SRCAP	10847	broad.mit.edu	37	16	30748559	30748559	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr16:30748559C>G	uc002dze.1	+	34	7583	c.7198C>G	c.(7198-7200)CGT>GGT	p.R2400G	SRCAP_uc002dzf.2_RNA|SRCAP_uc002dzg.1_Missense_Mutation_p.R2195G	NM_006662	NP_006653	Q6ZRS2	SRCAP_HUMAN	Snf2-related CBP activator protein	2400					interspecies interaction between organisms|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	Golgi apparatus|nucleus|protein complex	ATP binding|DNA binding|helicase activity|histone acetyltransferase activity|transcription coactivator activity			ovary(3)|skin(1)	4			Colorectal(24;0.198)			TGAGCGTCTTCGTGGAGCCCG	0.627													36	62					0	0	0	0
HPR	3250	broad.mit.edu	37	16	72108244	72108244	+	Nonsense_Mutation	SNP	C	G	G			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr16:72108244C>G	uc002fby.2	+	3	183	c.153C>G	c.(151-153)TAC>TAG	p.Y51*	TXNL4B_uc010cgl.2_Intron	NM_020995	NP_066275	P00739	HPTR_HUMAN	haptoglobin-related protein precursor	51	Sushi.				proteolysis	spherical high-density lipoprotein particle	hemoglobin binding|serine-type endopeptidase activity			central_nervous_system(1)	1		Ovarian(137;0.125)				TGTTTCGCTACCAGTGTAAGA	0.488													31	28					0	0	0	0
OR3A3	8392	broad.mit.edu	37	17	3324532	3324532	+	Missense_Mutation	SNP	G	T	T	rs143627345	by1000genomes	TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr17:3324532G>T	uc010vrd.1	+	1	671	c.671G>T	c.(670-672)AGT>ATT	p.S224I		NM_012373	NP_036505	P47888	OR3A3_HUMAN	olfactory receptor, family 3, subfamily A,	224	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						GTCTTCATCAGTGTGTCCTAT	0.567													27	15					7.76418e-22	1.00164e-21	1	0
TRPV1	7442	broad.mit.edu	37	17	3495362	3495362	+	Missense_Mutation	SNP	T	C	C	rs56016548		TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr17:3495362T>C	uc010vrr.1	-	1	810	c.283A>G	c.(283-285)AGG>GGG	p.R95G	TRPV1_uc010vro.1_Missense_Mutation_p.R95G|TRPV1_uc010vrp.1_Missense_Mutation_p.R95G|TRPV1_uc010vrq.1_Silent_p.P69P|TRPV1_uc010vrs.1_Missense_Mutation_p.R95G|TRPV1_uc010vrt.1_Missense_Mutation_p.R95G|TRPV1_uc010vru.1_Missense_Mutation_p.R95G	NM_080706	NP_542437	Q8NER1	TRPV1_HUMAN	transient receptor potential cation channel,	95	Cytoplasmic (Potential).				cell surface receptor linked signaling pathway|chemosensory behavior|thermoception	cell junction|dendritic spine membrane|integral to plasma membrane|postsynaptic membrane	ATP binding|calcium channel activity|calmodulin binding			ovary(1)	1				Lung(1;0.055)|COAD - Colon adenocarcinoma(5;0.0896)|LUAD - Lung adenocarcinoma(1115;0.131)	Alpha-Linolenic Acid(DB00132)|Aspartame(DB00168)|Icosapent(DB00159)	CGGACTTACCTGGCACCGGTG	0.632													6	16					0	0	0	0
ALOX15	246	broad.mit.edu	37	17	4542794	4542794	+	Missense_Mutation	SNP	C	G	G	rs11568142	byFrequency	TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr17:4542794C>G	uc002fyh.2	-	2	282	c.268G>C	c.(268-270)GAC>CAC	p.D90H	ALOX15_uc010vsd.1_Missense_Mutation_p.D51H|ALOX15_uc010vse.1_Missense_Mutation_p.D112H	NM_001140	NP_001131	P16050	LOX15_HUMAN	arachidonate 15-lipoxygenase	90	PLAT.				inflammatory response|leukotriene biosynthetic process	nucleus	arachidonate 15-lipoxygenase activity|iron ion binding|lipoxygenase activity			skin(3)|ovary(1)|lung(1)	5				READ - Rectum adenocarcinoma(115;0.0327)	Ciclopirox(DB01188)|Masoprocol(DB00179)|Zileuton(DB00744)	CTGACCTCGTCCCCGGCTCCG	0.652													6	22					0	0	0	0
TP53	7157	broad.mit.edu	37	17	7578461	7578461	+	Missense_Mutation	SNP	C	A	A	rs121912654		TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr17:7578461C>A	uc002gim.2	-	5	663	c.469G>T	c.(469-471)GTC>TTC	p.V157F	TP53_uc002gig.1_Missense_Mutation_p.V157F|TP53_uc002gih.2_Missense_Mutation_p.V157F|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Missense_Mutation_p.V25F|TP53_uc010cng.1_Missense_Mutation_p.V25F|TP53_uc002gii.1_Missense_Mutation_p.V25F|TP53_uc010cnh.1_Missense_Mutation_p.V157F|TP53_uc010cni.1_Missense_Mutation_p.V157F|TP53_uc002gij.2_Missense_Mutation_p.V157F|TP53_uc010cnj.1_RNA|TP53_uc002gin.2_Missense_Mutation_p.V64F|TP53_uc002gio.2_Missense_Mutation_p.V25F|TP53_uc010vug.1_Missense_Mutation_p.V118F	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a	157	Required for interaction with FBXO42.||Interaction with HIPK1 (By similarity).|Interaction with AXIN1 (By similarity).		V -> I (in sporadic cancers; somatic mutation).|V -> G (in sporadic cancers; somatic mutation).|V -> A (in sporadic cancers; somatic mutation).|V -> L (in sporadic cancers; somatic mutation).|V -> F (in sporadic cancers; somatic mutation).|V -> D (in sporadic cancers; somatic mutation).		activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.V157F(139)|p.V157I(10)|p.V157D(8)|p.V157G(7)|p.0?(7)|p.V157L(6)|p.V157V(5)|p.V157fs*13(3)|p.R156_I162delRVRAMAI(2)|p.T155fs*23(2)|p.V157del(2)|p.V157fs*9(2)|p.P153fs*22(2)|p.V157fs*22(2)|p.V157fs*24(2)|p.V157_C176del20(1)|p.R156_A161delRVRAMA(1)|p.P151_V173del23(1)|p.V157A(1)|p.R156_R158delRVR(1)|p.R156fs*12(1)|p.R156fs*18(1)|p.R156_A161del(1)|p.V157_M160delVRAM(1)|p.D148fs*23(1)|p.V157_R158delVR(1)|p.S149fs*72(1)|p.T155_A161delTRVRAMA(1)|p.G154fs*22(1)|p.R156fs*20(1)|p.V157_I162delVRAMAI(1)|p.V157fs*23(1)|p.V157fs*21(1)|p.V157fs*25(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		ATGGCGCGGACGCGGGTGCCG	0.617		111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumeni_syndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			37	37					1.04594e-18	1.31586e-18	1	0
Unknown	0	broad.mit.edu	37	17	18344511	18344511	+	RNA	SNP	G	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr17:18344511G>A	uc010vya.1	+	3		c.717G>A								Homo sapiens cDNA FLJ56791 complete cds, highly similar to Keratin, type I cytoskeletal 16.																		CTGGCCCTGCGGCTGACTGTG	0.637													4	7					0	0	0	0
SLC13A2	9058	broad.mit.edu	37	17	26821423	26821423	+	Missense_Mutation	SNP	C	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr17:26821423C>A	uc002hbh.2	+	9	1268	c.1201C>A	c.(1201-1203)CTG>ATG	p.L401M	SLC13A2_uc010wam.1_Missense_Mutation_p.L357M|SLC13A2_uc010wan.1_Missense_Mutation_p.L450M|SLC13A2_uc010wao.1_Missense_Mutation_p.L358M|SLC13A2_uc002hbi.2_Missense_Mutation_p.L330M	NM_003984	NP_003975	Q13183	S13A2_HUMAN	solute carrier family 13, member 2 isoform b	401						integral to plasma membrane|membrane fraction	low affinity sodium:dicarboxylate symporter activity				0	all_lung(13;0.000871)|Lung NSC(42;0.0027)			UCEC - Uterine corpus endometrioid carcinoma (53;0.154)	Succinic acid(DB00139)	CCCAGGGAAGCTGAAGGCCCC	0.567											OREG0024276	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	24	56					1.66031e-10	1.88739e-10	1	0
SUPT6H	6830	broad.mit.edu	37	17	27013800	27013800	+	Missense_Mutation	SNP	A	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr17:27013800A>T	uc002hby.2	+	21	2783	c.2693A>T	c.(2692-2694)AAG>ATG	p.K898M	SUPT6H_uc010crt.2_Missense_Mutation_p.K898M|SUPT6H_uc002hbz.1_5'Flank	NM_003170	NP_003161	Q7KZ85	SPT6H_HUMAN	suppressor of Ty 6 homolog	898					chromatin remodeling|regulation of transcription elongation, DNA-dependent|regulation of transcription from RNA polymerase II promoter	nucleus	hydrolase activity, acting on ester bonds|RNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)|skin(1)	3	Lung NSC(42;0.00431)					AACAGCAAGAAGTCAGAGGTA	0.488													16	24					0	0	0	0
KRT31	3881	broad.mit.edu	37	17	39551868	39551868	+	Missense_Mutation	SNP	T	C	C			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr17:39551868T>C	uc002hwn.2	-	4	649	c.596A>G	c.(595-597)AAT>AGT	p.N199S	KRT31_uc010cxn.2_Missense_Mutation_p.N199S	NM_002277	NP_002268	Q15323	K1H1_HUMAN	keratin 31	199	Rod.|Coil 1B.				epidermis development	intermediate filament	protein binding|structural constituent of cytoskeleton				0		Breast(137;0.000496)				GCGCAGGGTATTGACCTCCTA	0.483													26	39					0	0	0	0
KAT2A	2648	broad.mit.edu	37	17	40269097	40269097	+	Missense_Mutation	SNP	T	C	C			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr17:40269097T>C	uc002hyx.2	-	11	1780	c.1720A>G	c.(1720-1722)ACG>GCG	p.T574A		NM_021078	NP_066564	Q92830	KAT2A_HUMAN	general control of amino acid synthesis 5-like	574	N-acetyltransferase.				chromatin remodeling|histone deubiquitination|interspecies interaction between organisms|regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	Ada2/Gcn5/Ada3 transcription activator complex|STAGA complex|transcription factor TFTC complex	H3 histone acetyltransferase activity|histone deacetylase binding|protein binding|transcription coactivator activity			upper_aerodigestive_tract(1)|lung(1)	2						ACAATCTCCGTGAAGCCCTGG	0.617											OREG0024419	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	53	83					0	0	0	0
RAMP2	10266	broad.mit.edu	37	17	40914628	40914628	+	Silent	SNP	C	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr17:40914628C>T	uc002ibg.2	+	4	354	c.286C>T	c.(286-288)CTG>TTG	p.L96L	LOC100190938_uc002ibd.1_5'Flank|LOC100190938_uc002ibe.3_5'Flank|LOC100190938_uc002ibf.3_5'Flank|RAMP2_uc010cyt.2_Silent_p.L101L|RAMP2_uc002ibh.2_Silent_p.P59P	NM_005854	NP_005845	O60895	RAMP2_HUMAN	receptor activity modifying protein 2 precursor	96	Extracellular (Potential).				intracellular protein transport|receptor-mediated endocytosis|regulation of G-protein coupled receptor protein signaling pathway	coated pit|integral to plasma membrane|lysosome	protein transporter activity				0		Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.0741)	Pramlintide(DB01278)	TTATAGCACCCTGCGAGATTG	0.552													43	64					0	0	0	0
ACBD4	79777	broad.mit.edu	37	17	43216410	43216411	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr17:43216410_43216411GG>TT	uc002iid.2	+	9	1006_1007	c.662_663GG>TT	c.(661-663)CGG>CTT	p.R221L	ACBD4_uc010wjj.1_Missense_Mutation_p.R237L|ACBD4_uc002iie.2_Missense_Mutation_p.R237L|ACBD4_uc002iif.2_Missense_Mutation_p.G225W|ACBD4_uc002iic.2_Missense_Mutation_p.G225W|ACBD4_uc010dae.2_Missense_Mutation_p.R159L	NM_001135707	NP_001129179	Q8NC06	ACBD4_HUMAN	acyl-Coenzyme A binding domain containing 4	221							fatty-acyl-CoA binding			ovary(1)|kidney(1)	2						GCAGCCCGCCGGGGCCCCAGGA	0.678													40	70					0	0	0	0
MRPL10	124995	broad.mit.edu	37	17	45906032	45906032	+	Silent	SNP	C	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr17:45906032C>A	uc002ilz.2	-	2	83	c.57G>T	c.(55-57)CGG>CGT	p.R19R	MRPL10_uc010wky.1_5'UTR|MRPL10_uc002ily.2_Silent_p.R29R	NM_145255	NP_660298	Q7Z7H8	RM10_HUMAN	mitochondrial ribosomal protein L10 precursor	19					ribosome biogenesis|translation	mitochondrial large ribosomal subunit	structural constituent of ribosome			ovary(1)	1						GGGTAGGCAGCCGGCCTGGGA	0.547													16	39					5.35267e-07	5.77405e-07	1	0
HOXB5	3215	broad.mit.edu	37	17	46669598	46669598	+	Silent	SNP	A	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr17:46669598A>T	uc002inr.2	-	2	842	c.783T>A	c.(781-783)GCT>GCA	p.A261A	HOXB3_uc010wlm.1_5'Flank|HOXB3_uc010dbf.2_5'Flank|HOXB3_uc010dbg.2_5'Flank	NM_002147	NP_002138	P09067	HXB5_HUMAN	homeobox B5	261						nucleus	sequence-specific DNA binding				0						TGCCAGCTGTAGCCAGGCTCA	0.637													44	69					0	0	0	0
CACNA1G	8913	broad.mit.edu	37	17	48653642	48653642	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr17:48653642G>A	uc002irk.1	+	8	2251	c.1879G>A	c.(1879-1881)GGG>AGG	p.G627R	CACNA1G_uc002iri.1_Missense_Mutation_p.G627R|CACNA1G_uc002irj.1_Missense_Mutation_p.G627R|CACNA1G_uc002irl.1_Missense_Mutation_p.G627R|CACNA1G_uc002irm.1_Missense_Mutation_p.G627R|CACNA1G_uc002irn.1_Missense_Mutation_p.G627R|CACNA1G_uc002iro.1_Missense_Mutation_p.G627R|CACNA1G_uc002irp.1_Missense_Mutation_p.G627R|CACNA1G_uc002irq.1_Missense_Mutation_p.G627R|CACNA1G_uc002irr.1_Missense_Mutation_p.G627R|CACNA1G_uc002irs.1_Missense_Mutation_p.G627R|CACNA1G_uc002irt.1_Missense_Mutation_p.G627R|CACNA1G_uc002irv.1_Missense_Mutation_p.G627R|CACNA1G_uc002irw.1_Missense_Mutation_p.G627R|CACNA1G_uc002iru.1_Missense_Mutation_p.G627R|CACNA1G_uc002irx.1_Missense_Mutation_p.G540R|CACNA1G_uc002iry.1_Missense_Mutation_p.G540R|CACNA1G_uc002irz.1_Missense_Mutation_p.G540R|CACNA1G_uc002isa.1_Missense_Mutation_p.G540R|CACNA1G_uc002isb.1_Missense_Mutation_p.G540R|CACNA1G_uc002isc.1_Missense_Mutation_p.G540R|CACNA1G_uc002isd.1_Missense_Mutation_p.G540R|CACNA1G_uc002ise.1_Missense_Mutation_p.G540R|CACNA1G_uc002isf.1_Missense_Mutation_p.G540R|CACNA1G_uc002isg.1_Missense_Mutation_p.G540R|CACNA1G_uc002ish.1_Missense_Mutation_p.G540R|CACNA1G_uc002isi.1_Missense_Mutation_p.G540R	NM_018896	NP_061496	O43497	CAC1G_HUMAN	voltage-dependent calcium channel alpha 1G	627	Cytoplasmic (Potential).				axon guidance	voltage-gated calcium channel complex	low voltage-gated calcium channel activity			breast(1)	1	Breast(11;6.7e-17)		BRCA - Breast invasive adenocarcinoma(22;7.52e-09)		Ethosuximide(DB00593)|Flunarizine(DB04841)|Levetiracetam(DB01202)|Mibefradil(DB01388)|Pimozide(DB01100)|Trimethadione(DB00347)|Verapamil(DB00661)|Zonisamide(DB00909)	CATCCCACCCGGGCCCTACAG	0.582													4	12					0	0	0	0
ANKFN1	162282	broad.mit.edu	37	17	54428145	54428145	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr17:54428145G>A	uc002iun.1	+	4	251	c.216G>A	c.(214-216)ATG>ATA	p.M72I		NM_153228	NP_694960	Q8N957	ANKF1_HUMAN	ankyrin-repeat and fibronectin type III domain	72										large_intestine(1)|ovary(1)	2						GTGTGAAAATGACGCAACAAA	0.388													57	62					0	0	0	0
C17orf47	284083	broad.mit.edu	37	17	56621330	56621330	+	Missense_Mutation	SNP	A	C	C			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr17:56621330A>C	uc002iwq.1	-	1	354	c.218T>G	c.(217-219)CTC>CGC	p.L73R		NM_001038704	NP_001033793	Q8NEP4	CQ047_HUMAN	hypothetical protein LOC284083	73										breast(1)	1	Medulloblastoma(34;0.127)|all_neural(34;0.237)					TCCTGACTGGAGGGAGACAGA	0.567													47	51					0	0	0	0
CACNG5	27091	broad.mit.edu	37	17	64873613	64873613	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr17:64873613C>T	uc010wqi.1	+	2	400	c.163C>T	c.(163-165)CAC>TAC	p.H55Y	CACNG5_uc002jfr.2_Missense_Mutation_p.H55Y|CACNG5_uc010wqj.1_Missense_Mutation_p.H55Y	NM_145811	NP_665810	Q9UF02	CCG5_HUMAN	voltage-dependent calcium channel gamma-5	55					regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|postsynaptic density|postsynaptic membrane	voltage-gated calcium channel activity			pancreas(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(6;1.61e-08)			GATGTCCCTGCACTCAGGCCT	0.637													60	69					0	0	0	0
ARSG	22901	broad.mit.edu	37	17	66366632	66366632	+	Missense_Mutation	SNP	G	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr17:66366632G>T	uc002jhc.2	+	8	1745	c.949G>T	c.(949-951)GGT>TGT	p.G317C	ARSG_uc002jhb.1_Missense_Mutation_p.G153C	NM_014960	NP_055775	Q96EG1	ARSG_HUMAN	Arylsulfatase G precursor	317					sulfur compound metabolic process	endoplasmic reticulum|extracellular space|lysosome	arylsulfatase activity|metal ion binding			ovary(1)	1			BRCA - Breast invasive adenocarcinoma(8;5.34e-07)|LUSC - Lung squamous cell carcinoma(166;0.24)			GGGCAGTGTGGGTCCCTTCAC	0.552													31	45					5.20837e-25	6.82337e-25	1	0
CDR2L	30850	broad.mit.edu	37	17	72997561	72997562	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr17:72997561_72997562GG>TT	uc002jml.3	+	3	730_731	c.318_319GG>TT	c.(316-321)AAGGCT>AATTCT	p.106_107KA>NS		NM_014603	NP_055418	Q86X02	CDR2L_HUMAN	cerebellar degeneration-related protein 2-like	106_107	Potential.										0	all_lung(278;0.226)					TGGAGAGTAAGGCTGCCCAGCA	0.658													9	12					0	0	0	0
UNK	85451	broad.mit.edu	37	17	73815859	73815859	+	Silent	SNP	C	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr17:73815859C>T	uc002jpm.2	+	13	1869	c.1869C>T	c.(1867-1869)ATC>ATT	p.I623I		NM_001080419	NP_001073888	Q9C0B0	UNK_HUMAN	zinc finger CCCH-type domain containing 5	547							nucleic acid binding|zinc ion binding				0			all cancers(21;2.61e-06)|Epithelial(20;7.39e-06)|BRCA - Breast invasive adenocarcinoma(9;0.00194)|LUSC - Lung squamous cell carcinoma(166;0.154)			CAGGAAGCATCACCATCGGTA	0.627													28	62					0	0	0	0
COLEC12	81035	broad.mit.edu	37	18	334986	334986	+	Silent	SNP	C	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr18:334986C>T	uc002kkm.2	-	6	1787	c.1572G>A	c.(1570-1572)GGG>GGA	p.G524G		NM_130386	NP_569057	Q5KU26	COL12_HUMAN	collectin sub-family member 12	524	Collagen-like 2.|Extracellular (Potential).				carbohydrate mediated signaling|innate immune response|phagocytosis, recognition|protein homooligomerization	collagen|integral to membrane	galactose binding|low-density lipoprotein particle binding|metal ion binding|pattern recognition receptor activity|scavenger receptor activity			ovary(1)|pancreas(1)	2		all_cancers(4;0.0442)|Myeloproliferative disorder(11;0.0426)				GGCCTGGGTCCCCACTGGAGC	0.721													7	10					0	0	0	0
LPIN2	9663	broad.mit.edu	37	18	2938026	2938026	+	Nonsense_Mutation	SNP	T	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr18:2938026T>A	uc002klo.2	-	7	1071	c.832A>T	c.(832-834)AGA>TGA	p.R278*		NM_014646	NP_055461	Q92539	LPIN2_HUMAN	lipin 2	278					fatty acid metabolic process|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent|triglyceride biosynthetic process	cytosol|endoplasmic reticulum membrane|nucleus	phosphatidate phosphatase activity|transcription coactivator activity			ovary(1)|skin(1)	2				READ - Rectum adenocarcinoma(2;0.0419)|Colorectal(6;0.156)		GATCGTTCTCTTTTGCTGACC	0.338													35	62					0	0	0	0
LOC727896	727896	broad.mit.edu	37	18	2946363	2946363	+	Missense_Mutation	SNP	C	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr18:2946363C>A	uc010wyu.1	-	1	259	c.172G>T	c.(172-174)GGC>TGC	p.G58C	LPIN2_uc002klo.2_Intron	NR_026659				Homo sapiens cDNA clone IMAGE:4614712, containing frame-shift errors.												0						TTTGTACAGCCTACAATGCTT	0.413													13	14					0.00498961	0.00503931	1	0
PTPRM	5797	broad.mit.edu	37	18	7955280	7955280	+	Missense_Mutation	SNP	G	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr18:7955280G>T	uc002knn.3	+	7	1503	c.1000G>T	c.(1000-1002)GAT>TAT	p.D334Y	PTPRM_uc010dkv.2_Missense_Mutation_p.D334Y|PTPRM_uc010wzl.1_Missense_Mutation_p.D121Y	NM_002845	NP_002836	P28827	PTPRM_HUMAN	protein tyrosine phosphatase, receptor type, M	334	Fibronectin type-III 1.|Extracellular (Potential).				homophilic cell adhesion|negative regulation of angiogenesis|negative regulation of endothelial cell migration|negative regulation of endothelial cell proliferation|response to drug|retina layer formation|retinal ganglion cell axon guidance	cell-cell adherens junction|integral to plasma membrane|lamellipodium|perinuclear region of cytoplasm	cadherin binding|transmembrane receptor protein tyrosine phosphatase activity			lung(3)|ovary(2)|central_nervous_system(1)	6		Colorectal(10;0.234)				GCAGCCAGTCGATTCCACGAG	0.572													11	25					4.68919e-08	5.12375e-08	1	0
KIAA0802	23255	broad.mit.edu	37	18	8819104	8819104	+	Silent	SNP	C	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr18:8819104C>A	uc002knr.2	+	13	3145	c.3003C>A	c.(3001-3003)ATC>ATA	p.I1001I	KIAA0802_uc002knq.2_Silent_p.I960I|KIAA0802_uc002kns.2_Silent_p.I341I	NM_015210	NP_056025	Q9Y4B5	CC165_HUMAN	hypothetical protein LOC23255	1311											0						CTGACTCCATCCCGTTTGAAG	0.602													12	45					4.36969e-10	4.9014e-10	1	0
CEP192	55125	broad.mit.edu	37	18	13087592	13087592	+	Silent	SNP	A	G	G			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr18:13087592A>G	uc010xac.1	+	32	6020	c.5940A>G	c.(5938-5940)CTA>CTG	p.L1980L	CEP192_uc010dlf.1_RNA|CEP192_uc010xad.1_Silent_p.L1505L|CEP192_uc002kru.2_RNA|CEP192_uc002krv.2_Silent_p.L402L|CEP192_uc002krw.2_Silent_p.L129L|CEP192_uc002krx.2_5'UTR|CEP192_uc002kry.2_5'Flank	NM_032142	NP_115518	E9PF99	E9PF99_HUMAN	centrosomal protein 192kDa	1980										ovary(4)|pancreas(1)	5						CAACAGAACTATCAACTGTAT	0.313													31	46					0	0	0	0
CXADRP3	440224	broad.mit.edu	37	18	14478627	14478627	+	RNA	SNP	T	C	C			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr18:14478627T>C	uc010xai.1	-	3		c.937A>G				NR_024076				Homo sapiens cDNA clone IMAGE:30390722, containing frame-shift errors.												0						GTTTCTGATGTACAGCTGTAT	0.423													4	8					0	0	0	0
ASXL3	80816	broad.mit.edu	37	18	31263416	31263416	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr18:31263416G>A	uc010dmg.1	+	8	818	c.763G>A	c.(763-765)GGA>AGA	p.G255R	ASXL3_uc002kxq.2_5'UTR	NM_030632	NP_085135	Q9C0F0	ASXL3_HUMAN	additional sex combs like 3	255					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding			ovary(2)|pancreas(1)	3						AGAAACCCCAGGATCTATTCT	0.418													14	6					0	0	0	0
ELAC1	55520	broad.mit.edu	37	18	48510848	48510848	+	Silent	SNP	C	G	G			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr18:48510848C>G	uc002lez.2	+	3	646	c.540C>G	c.(538-540)CTC>CTG	p.L180L	ELAC1_uc010dpe.2_Silent_p.L180L|SMAD4_uc010xdo.1_Intron	NM_018696	NP_061166	Q9H777	RNZ1_HUMAN	elaC homolog 1	180					tRNA 3'-trailer cleavage	nucleus	endoribonuclease activity, producing 5'-phosphomonoesters|metal ion binding				0		Colorectal(6;0.0269)|all_epithelial(6;0.0729)		Colorectal(21;0.000943)|COAD - Colon adenocarcinoma(17;0.0398)|READ - Rectum adenocarcinoma(32;0.0894)|STAD - Stomach adenocarcinoma(97;0.18)		CATTTCGCCTCTTTCACAGAA	0.388													13	9					0	0	0	0
C19orf21	126353	broad.mit.edu	37	19	757706	757706	+	Missense_Mutation	SNP	G	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr19:757706G>T	uc002lpo.2	+	2	843	c.760G>T	c.(760-762)GTG>TTG	p.V254L		NM_173481	NP_775752	Q8IVT2	CS021_HUMAN	hypothetical protein LOC126353	254										upper_aerodigestive_tract(1)	1		Acute lymphoblastic leukemia(61;4.36e-14)|all_hematologic(61;4.84e-09)|Lung NSC(49;0.000145)|all_lung(49;0.000236)|Breast(49;0.0014)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GGTGAAGGGGGTGGTCAGGGA	0.657													21	22					1.96292e-10	2.2264e-10	1	0
ATP8B3	148229	broad.mit.edu	37	19	1800001	1800001	+	Silent	SNP	C	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr19:1800001C>A	uc002ltw.2	-	14	1731	c.1497G>T	c.(1495-1497)ACG>ACT	p.T499T	ATP8B3_uc002ltv.2_Silent_p.T452T|ATP8B3_uc002ltx.2_RNA|ATP8B3_uc002lty.1_Silent_p.T247T|ATP8B3_uc002ltz.1_Silent_p.T446T	NM_138813	NP_620168	O60423	AT8B3_HUMAN	ATPase, class I, type 8B, member 3	499	Cytoplasmic (Potential).				ATP biosynthetic process		ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TCTGCGTGAGCGTGCCCGTCT	0.612													13	21					1.49906e-05	1.5703e-05	1	0
TIMM13	26517	broad.mit.edu	37	19	2426974	2426974	+	Missense_Mutation	SNP	C	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr19:2426974C>A	uc002lvx.1	-	3	604	c.260G>T	c.(259-261)CGG>CTG	p.R87L		NM_012458	NP_036590	Q9Y5L4	TIM13_HUMAN	translocase of inner mitochondrial membrane 13	87					protein import into mitochondrial inner membrane|sensory perception of sound|transmembrane transport	mitochondrial inner membrane presequence translocase complex|mitochondrial intermembrane space protein transporter complex	protein binding|zinc ion binding				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CCGCTGCAGCCGCGAGTTGTA	0.647													9	12					0.00829132	0.00835725	1	0
UHRF1	29128	broad.mit.edu	37	19	4910983	4910983	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr19:4910983G>A	uc002mbo.2	+	2	254	c.86G>A	c.(85-87)AGG>AAG	p.R29K	uc002mbn.1_5'Flank|UHRF1_uc010xik.1_Intron|UHRF1_uc010duf.2_RNA|UHRF1_uc002mbp.2_Missense_Mutation_p.R42K	NM_001048201	NP_001041666	Q96T88	UHRF1_HUMAN	ubiquitin-like with PHD and ring finger domains	29	Ubiquitin-like.				cell cycle|cell proliferation|DNA repair|regulation of transcription from RNA polymerase II promoter	nucleus	acid-amino acid ligase activity|methyl-CpG binding|methylated histone residue binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(2)	2				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0276)		GAGGAGCTGAGGCGGAAGATC	0.627											OREG0025176	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	60	127					0	0	0	0
MUC16	94025	broad.mit.edu	37	19	9002556	9002556	+	Silent	SNP	G	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr19:9002556G>A	uc002mkp.2	-	51	40464	c.40260C>T	c.(40258-40260)CAC>CAT	p.H13420H	MUC16_uc010dwi.2_RNA|MUC16_uc010dwj.2_Silent_p.H237H|MUC16_uc010xki.1_RNA	NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	13422	Extracellular (Potential).|SEA 9.				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CAGTGATGCCGTGGGTCAGCT	0.582													88	215					0	0	0	0
MUC16	94025	broad.mit.edu	37	19	9060524	9060524	+	Silent	SNP	G	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr19:9060524G>A	uc002mkp.2	-	3	27126	c.26922C>T	c.(26920-26922)ACC>ACT	p.T8974T		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	8976	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGTCTTTTATGGTGGAAGAGG	0.488													74	180					0	0	0	0
SMARCA4	6597	broad.mit.edu	37	19	11144071	11144071	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr19:11144071G>A	uc002mqf.3	+	26	3936	c.3652G>A	c.(3652-3654)GCC>ACC	p.A1218T	SMARCA4_uc010dxp.2_Missense_Mutation_p.A1218T|SMARCA4_uc010dxo.2_Missense_Mutation_p.A1218T|SMARCA4_uc010dxq.2_Missense_Mutation_p.A1218T|SMARCA4_uc010dxr.2_Missense_Mutation_p.A1218T|SMARCA4_uc002mqj.3_Missense_Mutation_p.A1218T|SMARCA4_uc010dxs.2_Missense_Mutation_p.A1218T|SMARCA4_uc010dxt.1_Missense_Mutation_p.A438T|SMARCA4_uc002mqh.3_Missense_Mutation_p.A341T|SMARCA4_uc002mqi.1_Missense_Mutation_p.A421T	NM_003072	NP_003063	P51532	SMCA4_HUMAN	SWI/SNF-related matrix-associated	1218	Helicase C-terminal.				chromatin remodeling|negative regulation of androgen receptor signaling pathway|negative regulation of cell growth|negative regulation of S phase of mitotic cell cycle|negative regulation of transcription from RNA polymerase II promoter|nervous system development|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nBAF complex|npBAF complex|nuclear chromatin|SWI/SNF complex|WINAC complex	androgen receptor binding|ATP binding|DNA binding|DNA-dependent ATPase activity|helicase activity|histone acetyl-lysine binding|identical protein binding|p53 binding|protein N-terminus binding|transcription corepressor activity			lung(29)|ovary(8)|pancreas(7)|large_intestine(5)|central_nervous_system(5)|skin(3)|prostate(3)|breast(2)|adrenal_gland(1)|stomach(1)|liver(1)|autonomic_ganglia(1)|kidney(1)	67		all_lung(6;0.0512)|Lung NSC(9;0.0568)				CCTAGCTGCAGCCAAGTACAA	0.632			F|N|Mis		NSCLC				Rhabdoid_Predisposition_syndrome				87	206					0	0	0	0
RAB3D	9545	broad.mit.edu	37	19	11436084	11436084	+	Missense_Mutation	SNP	C	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr19:11436084C>A	uc002mqy.2	-	5	888	c.650G>T	c.(649-651)TGC>TTC	p.C217F	TSPAN16_uc002mqv.1_Intron|RAB3D_uc002mqx.2_5'Flank	NM_004283	NP_004274	O95716	RAB3D_HUMAN	RAB3D, member RAS oncogene family	217					exocytosis|protein transport|small GTPase mediated signal transduction	plasma membrane	GTP binding|GTPase activity			ovary(2)	2						CTAGCAGCTGCAGCTGCTGGG	0.657													10	5					2.17888e-05	2.27771e-05	1	0
ECSIT	51295	broad.mit.edu	37	19	11624045	11624045	+	Silent	SNP	T	C	C			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr19:11624045T>C	uc002msb.2	-	4	698	c.564A>G	c.(562-564)GGA>GGG	p.G188G	ECSIT_uc002msa.1_RNA|ECSIT_uc010dyc.1_Silent_p.G188G|ECSIT_uc010dyd.2_Silent_p.G188G|ECSIT_uc010xma.1_Intron	NM_016581	NP_057665	Q9BQ95	ECSIT_HUMAN	evolutionarily conserved signaling intermediate	188					innate immune response|regulation of oxidoreductase activity	mitochondrion	oxidoreductase activity, acting on NADH or NADPH|protein binding			ovary(1)	1						AGCTTTTGCGTCCAAAGATCT	0.587													22	29					0	0	0	0
FBXW9	84261	broad.mit.edu	37	19	12800869	12800869	+	Silent	SNP	C	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr19:12800869C>T	uc010dyx.2	-	6	999	c.999G>A	c.(997-999)CTG>CTA	p.L333L	FBXW9_uc010xmp.1_RNA|uc002mul.1_3'UTR|FBXW9_uc002mum.1_Silent_p.L313L|FBXW9_uc002mun.1_Silent_p.L150L	NM_032301	NP_115677	Q5XUX1	FBXW9_HUMAN	F-box and WD-40 domain protein 9	343	WD 4.						protein binding			ovary(1)	1						CATCCGCCAGCAGGGTCAGCA	0.657													65	138					0	0	0	0
ILVBL	10994	broad.mit.edu	37	19	15234374	15234374	+	Missense_Mutation	SNP	C	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr19:15234374C>A	uc002nam.2	-	3	270	c.149G>T	c.(148-150)AGC>ATC	p.S50I	ILVBL_uc010dzw.2_5'UTR|ILVBL_uc010dzx.1_Missense_Mutation_p.S50I	NM_006844	NP_006835	A1L0T0	ILVBL_HUMAN	ilvB (bacterial acetolactate synthase)-like	50						integral to membrane	magnesium ion binding|thiamine pyrophosphate binding|transferase activity			ovary(2)	2						ATGCCGGACGCTTGCCTTGTC	0.632													26	71					2.4375e-19	3.08182e-19	1	0
NOTCH3	4854	broad.mit.edu	37	19	15290995	15290995	+	Missense_Mutation	SNP	C	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr19:15290995C>A	uc002nan.2	-	20	3291	c.3215G>T	c.(3214-3216)TGC>TTC	p.C1072F	NOTCH3_uc002nao.1_Missense_Mutation_p.C1020F	NM_000435	NP_000426	Q9UM47	NOTC3_HUMAN	Notch homolog 3 precursor	1072	Extracellular (Potential).|EGF-like 27.				Notch receptor processing|Notch signaling pathway|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to membrane|nucleoplasm|plasma membrane	calcium ion binding|protein binding|receptor activity			lung(8)|ovary(5)|skin(4)|prostate(2)|central_nervous_system(1)|breast(1)	21			OV - Ovarian serous cystadenocarcinoma(3;2.6e-20)|Epithelial(3;1.34e-16)|all cancers(3;5.13e-15)			GCCCTCTGGGCACACGCAGTA	0.652													54	106					7.77372e-23	1.01058e-22	1	0
WIZ	58525	broad.mit.edu	37	19	15547905	15547905	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr19:15547905G>A	uc002nbb.3	-	3	455	c.241C>T	c.(241-243)CGC>TGC	p.R81C		NM_021241	NP_067064	O95785	WIZ_HUMAN	widely-interspaced zinc finger motifs	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment						nucleus	zinc ion binding				0						AAGTCACAGCGCATCAGGCTG	0.657													5	16					0	0	0	0
KCNN1	3780	broad.mit.edu	37	19	18085010	18085010	+	Missense_Mutation	SNP	C	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr19:18085010C>A	uc002nht.2	+	3	623	c.313C>A	c.(313-315)CGC>AGC	p.R105S	KCNN1_uc010xqa.1_Missense_Mutation_p.R105S	NM_002248	NP_002239	Q92952	KCNN1_HUMAN	potassium intermediate/small conductance	105					synaptic transmission	voltage-gated potassium channel complex	calmodulin binding|small conductance calcium-activated potassium channel activity				0						GAAGCGGAAGCGCCTCAGCGA	0.627													13	20					9.31168e-06	9.77437e-06	1	0
GATAD2A	54815	broad.mit.edu	37	19	19606652	19606652	+	Silent	SNP	G	C	C			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr19:19606652G>C	uc010xqt.1	+	6	1026	c.714G>C	c.(712-714)GCG>GCC	p.A238A	GATAD2A_uc010xqu.1_Intron|GATAD2A_uc010xqv.1_Silent_p.A257A|GATAD2A_uc010xqw.1_Silent_p.A65A	NM_017660	NP_060130	Q86YP4	P66A_HUMAN	GATA zinc finger domain containing 2A	238					DNA methylation|negative regulation of transcription, DNA-dependent	nuclear speck|NuRD complex	protein binding, bridging|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						GGCCACAGGCGAGCTCACAGG	0.657													25	32					0	0	0	0
Unknown	0	broad.mit.edu	37	19	22785299	22785299	+	RNA	SNP	T	G	G	rs11670278	by1000genomes	TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr19:22785299T>G	uc002nqu.3	+	7		c.1475T>G								Homo sapiens cDNA FLJ60031 complete cds, moderately similar to Golgin subfamily A member 2.																		CCCTGCAGGGTGCCATGGAGA	0.632													4	14					0	0	0	0
GPATCH1	55094	broad.mit.edu	37	19	33585111	33585111	+	Missense_Mutation	SNP	G	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr19:33585111G>T	uc002nug.1	+	5	803	c.489G>T	c.(487-489)ATG>ATT	p.M163I		NM_018025	NP_060495	Q9BRR8	GPTC1_HUMAN	G patch domain containing 1	163	G-patch.					catalytic step 2 spliceosome	nucleic acid binding			skin(1)	1	Esophageal squamous(110;0.137)					TAAGAAAAATGGGTTGGAAAG	0.383													27	45					2.08457e-15	2.54057e-15	1	0
WTIP	126374	broad.mit.edu	37	19	34991064	34991064	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr19:34991064G>A	uc002nvm.2	+	8	1183	c.1183G>A	c.(1183-1185)GGA>AGA	p.G395R		NM_001080436	NP_001073905			Wilms tumor 1 interacting protein												0	all_lung(56;5.94e-07)|Lung NSC(56;9.35e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.211)			CGGGGAGGAGGGACGCCGTTG	0.672													15	35					0	0	0	0
FFAR2	2867	broad.mit.edu	37	19	35940898	35940898	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr19:35940898C>A	uc002nzg.2	+	2	362	c.282C>A	c.(280-282)TAC>TAA	p.Y94*	FFAR2_uc010eea.2_Nonsense_Mutation_p.Y94*	NM_005306	NP_005297	O15552	FFAR2_HUMAN	free fatty acid receptor 2	94	Helical; Name=3; (Potential).					integral to plasma membrane	G-protein coupled receptor activity|lipid binding			central_nervous_system(1)	1	all_lung(56;1.89e-08)|Lung NSC(56;2.9e-08)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0724)			GCAGCATCTACTGCAGCACGT	0.607													17	22					3.52763e-06	3.73384e-06	1	0
ZNF607	84775	broad.mit.edu	37	19	38189043	38189043	+	Silent	SNP	A	G	G			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr19:38189043A>G	uc002ohc.1	-	5	2585	c.1989T>C	c.(1987-1989)CAT>CAC	p.H663H	ZNF607_uc002ohb.1_Silent_p.H662H	NM_032689	NP_116078	Q96SK3	ZN607_HUMAN	zinc finger protein 607	663	C2H2-type 19.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0			UCEC - Uterine corpus endometrioid carcinoma (49;0.0775)			GAACTCTATGATGTATACTAA	0.363													50	73					0	0	0	0
CEACAM7	1087	broad.mit.edu	37	19	42181430	42181430	+	Nonsense_Mutation	SNP	A	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr19:42181430A>T	uc002ori.1	-	4	710	c.708T>A	c.(706-708)TAT>TAA	p.Y236*	CEACAM7_uc010ehx.2_Nonsense_Mutation_p.Y236*|CEACAM7_uc010ehy.1_Nonsense_Mutation_p.Y143*	NM_006890	NP_008821	Q14002	CEAM7_HUMAN	carcinoembryonic antigen-related cell adhesion	236						anchored to membrane|integral to membrane|plasma membrane				ovary(2)	2				OV - Ovarian serous cystadenocarcinoma(3;0.0027)|all cancers(3;0.00979)|Epithelial(262;0.0366)		GTACTGACTCATCTGCCATGG	0.473													42	21					0	0	0	0
CEACAM8	1088	broad.mit.edu	37	19	43093044	43093044	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr19:43093044G>A	uc002oud.2	-	4	952	c.850C>T	c.(850-852)CTC>TTC	p.L284F	uc010eif.1_Intron|uc010eig.1_Intron|uc010eih.1_Intron	NM_001816	NP_001807	P31997	CEAM8_HUMAN	carcinoembryonic antigen-related cell adhesion	284	Ig-like C2-type 2.				immune response	anchored to membrane|extracellular space|integral to plasma membrane				ovary(1)	1		Prostate(69;0.00899)				GGGATAAAGAGCTTTTGTGTG	0.507													24	20					0	0	0	0
MARK4	57787	broad.mit.edu	37	19	45790802	45790802	+	Silent	SNP	C	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr19:45790802C>T	uc002pbb.1	+	13	1379	c.1374C>T	c.(1372-1374)AGC>AGT	p.S458S	MARK4_uc002pba.1_Silent_p.S458S|MARK4_uc002pbc.1_Silent_p.S324S			Q96L34	MARK4_HUMAN	RecName: Full=MAP/microtubule affinity-regulating kinase 4;          EC=2.7.11.1; AltName: Full=MAP/microtubule affinity-regulating kinase-like 1;	458					microtubule bundle formation|nervous system development|positive regulation of programmed cell death	centrosome|neuron projection	ATP binding|gamma-tubulin binding|microtubule binding|protein serine/threonine kinase activity|tau-protein kinase activity|ubiquitin binding			central_nervous_system(2)|large_intestine(1)	3		all_neural(266;0.224)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.0102)		GGAAGGCGAGCTGCAGCACCG	0.716													6	6					0	0	0	0
SIX5	147912	broad.mit.edu	37	19	46269000	46269000	+	Missense_Mutation	SNP	G	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr19:46269000G>T	uc002pdb.2	-	3	2374	c.1979C>A	c.(1978-1980)GCG>GAG	p.A660E	SIX5_uc002pdc.2_3'UTR	NM_175875	NP_787071	Q8N196	SIX5_HUMAN	SIX homeobox 5	660						cytoplasm|nucleus	protein binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1		Ovarian(192;0.0308)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.00783)|GBM - Glioblastoma multiforme(486;0.0802)|Epithelial(262;0.235)		AGGCACGGCCGCGGGTGACAA	0.687													12	53					7.05477e-17	8.76658e-17	1	0
LILRB5	10990	broad.mit.edu	37	19	54760627	54760627	+	Missense_Mutation	SNP	G	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr19:54760627G>T	uc002qex.2	-	3	191	c.80C>A	c.(79-81)CCC>CAC	p.P27H	LILRA6_uc002qew.1_Intron|LILRB5_uc010yer.1_Missense_Mutation_p.P27H|LILRB5_uc002qey.2_Missense_Mutation_p.P27H|LILRB5_uc002qez.2_Missense_Mutation_p.P27H|LILRB5_uc002qfa.1_Missense_Mutation_p.P17H|LILRB5_uc010yes.1_RNA	NM_006840	NP_006831	O75023	LIRB5_HUMAN	leukocyte immunoglobulin-like receptor,	27	Ig-like C2-type 1.|Extracellular (Potential).				cell surface receptor linked signaling pathway|defense response	integral to membrane	transmembrane receptor activity			ovary(1)|pancreas(1)	2	all_cancers(19;0.00681)|all_epithelial(19;0.00368)|all_lung(19;0.016)|Lung NSC(19;0.0296)|Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		GGTGGGTTTGGGGAGGGTGCC	0.622													39	28					8.69298e-16	1.06457e-15	1	0
KIR3DL2	3812	broad.mit.edu	37	19	55363640	55363640	+	Silent	SNP	C	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr19:55363640C>A	uc002qho.3	+	3	291	c.258C>A	c.(256-258)ACC>ACA	p.T86T	KIR3DL1_uc002qhl.3_Intron|KIR2DS4_uc002qhn.1_Intron|KIR3DL2_uc010esh.2_Silent_p.T86T	NM_006737	NP_006728	P43630	KI3L2_HUMAN	killer cell immunoglobulin-like receptor, three	86	Extracellular (Potential).|Ig-like C2-type 1.				cellular defense response|regulation of immune response	integral to plasma membrane	receptor activity			ovary(1)|skin(1)	2				GBM - Glioblastoma multiforme(193;0.0192)		GCCCTGTGACCCCAGCACATG	0.557													26	9					3.54909e-21	4.55541e-21	1	0
ZNF548	147694	broad.mit.edu	37	19	57910317	57910317	+	Missense_Mutation	SNP	G	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr19:57910317G>T	uc002qom.2	+	3	912	c.662G>T	c.(661-663)GGA>GTA	p.G221V	ZNF547_uc002qpm.3_Intron|ZNF548_uc002qon.2_Missense_Mutation_p.G224V	NM_152909	NP_690873	Q8NEK5	ZN548_HUMAN	zinc finger protein 548	221					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(1)	1		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.221)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		ATCCACACAGGAGAAAGGTCT	0.383													23	28					1.75199e-13	2.06571e-13	1	0
GREB1	9687	broad.mit.edu	37	2	11728900	11728900	+	Silent	SNP	G	C	C			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr2:11728900G>C	uc002rbk.1	+	10	1488	c.1188G>C	c.(1186-1188)GGG>GGC	p.G396G	GREB1_uc002rbn.1_Silent_p.G396G|GREB1_uc002rbo.1_Silent_p.G30G	NM_014668	NP_055483	Q4ZG55	GREB1_HUMAN	growth regulation by estrogen in breast cancer 1	396						integral to membrane				ovary(1)	1	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.115)|OV - Ovarian serous cystadenocarcinoma(76;0.186)		ACCTCTGTGGGAACCTGAATG	0.572													24	65					0	0	0	0
IFT172	26160	broad.mit.edu	37	2	27670692	27670692	+	Missense_Mutation	SNP	A	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr2:27670692A>T	uc002rku.2	-	41	4577	c.4526T>A	c.(4525-4527)GTC>GAC	p.V1509D	IFT172_uc010ezb.2_RNA	NM_015662	NP_056477	Q9UG01	IF172_HUMAN	selective LIM binding factor homolog	1509					cilium assembly	cilium	binding			large_intestine(1)|ovary(1)	2	Acute lymphoblastic leukemia(172;0.155)					GTTGAAGAGGACATCTCGAAG	0.458													25	68					0	0	0	0
C2orf71	388939	broad.mit.edu	37	2	29296561	29296561	+	Silent	SNP	G	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr2:29296561G>T	uc002rmt.1	-	1	567	c.567C>A	c.(565-567)ACC>ACA	p.T189T		NM_001029883	NP_001025054	A6NGG8	CB071_HUMAN	hypothetical protein LOC388939	189					response to stimulus|visual perception	photoreceptor outer segment				skin(1)	1						AGTGTAGATAGGTGTAAGCCT	0.562													27	62					7.92952e-12	9.13697e-12	1	0
CAPN13	92291	broad.mit.edu	37	2	30986003	30986003	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr2:30986003G>A	uc002rnn.2	-	7	895	c.719C>T	c.(718-720)GCG>GTG	p.A240V	CAPN13_uc002rnp.1_Missense_Mutation_p.A240V	NM_144575	NP_653176	Q6MZZ7	CAN13_HUMAN	calpain 13	240	Calpain catalytic.				proteolysis	intracellular	calcium ion binding|calcium-dependent cysteine-type endopeptidase activity			large_intestine(1)|ovary(1)	2	all_hematologic(175;0.0487)|Acute lymphoblastic leukemia(172;0.155)					ATTCTCCATCGCCTGTGCTGT	0.522													16	22					0	0	0	0
EPAS1	2034	broad.mit.edu	37	2	46574193	46574193	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr2:46574193C>T	uc002ruv.2	+	2	696	c.208C>T	c.(208-210)CTC>TTC	p.L70F		NM_001430	NP_001421	Q99814	EPAS1_HUMAN	endothelial PAS domain protein 1	70					angiogenesis|myoblast cell fate commitment|positive regulation of transcription from RNA polymerase II promoter|response to hypoxia	transcription factor complex	histone acetyltransferase binding|protein heterodimerization activity|sequence-specific enhancer binding RNA polymerase II transcription factor activity|signal transducer activity|transcription coactivator activity|transcription factor binding			ovary(1)|skin(1)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.18)	LUSC - Lung squamous cell carcinoma(58;0.151)			ACACAAGCTCCTCTCCTCAGG	0.602													25	66					0	0	0	0
DYSF	8291	broad.mit.edu	37	2	71797013	71797013	+	Silent	SNP	C	A	A	rs148531939		TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr2:71797013C>A	uc002sie.2	+	27	3250	c.2874C>A	c.(2872-2874)ACC>ACA	p.T958T	DYSF_uc010feg.2_Silent_p.T989T|DYSF_uc010feh.2_Silent_p.T944T|DYSF_uc002sig.3_Silent_p.T944T|DYSF_uc010yqx.1_RNA|DYSF_uc010fee.2_Silent_p.T958T|DYSF_uc010fef.2_Silent_p.T975T|DYSF_uc010fei.2_Silent_p.T975T|DYSF_uc010fek.2_Silent_p.T976T|DYSF_uc010fej.2_Silent_p.T945T|DYSF_uc010fel.2_Silent_p.T945T|DYSF_uc010feo.2_Silent_p.T990T|DYSF_uc010fem.2_Silent_p.T959T|DYSF_uc010fen.2_Silent_p.T976T|DYSF_uc002sif.2_Silent_p.T959T	NM_003494	NP_003485	O75923	DYSF_HUMAN	dysferlin isoform 8	958	Cytoplasmic (Potential).					cytoplasmic vesicle membrane|integral to membrane|sarcolemma	calcium-dependent phospholipid binding			ovary(3)|breast(2)|pancreas(1)|skin(1)	7						AGAACCAGACCCGGCTTCCCG	0.577													15	42					1.28384e-07	1.3938e-07	1	0
LRRTM4	80059	broad.mit.edu	37	2	77746670	77746670	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr2:77746670G>A	uc002snr.2	-	3	740	c.325C>T	c.(325-327)CGT>TGT	p.R109C	LRRTM4_uc002snq.2_Missense_Mutation_p.R109C|LRRTM4_uc002sns.2_Missense_Mutation_p.R109C|LRRTM4_uc002snt.2_Missense_Mutation_p.R110C	NM_001134745	NP_001128217	Q86VH4	LRRT4_HUMAN	leucine rich repeat transmembrane neuronal 4	109	Extracellular (Potential).					integral to membrane				pancreas(3)|ovary(1)	4				Colorectal(11;0.059)		TTCAGTCTACGGATCCCTTGA	0.398													9	34					0	0	0	0
CTNNA2	1496	broad.mit.edu	37	2	80801322	80801322	+	Silent	SNP	C	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr2:80801322C>A	uc010ysh.1	+	12	1781	c.1776C>A	c.(1774-1776)GCC>GCA	p.A592A	CTNNA2_uc010yse.1_Silent_p.A592A|CTNNA2_uc010ysf.1_Silent_p.A592A|CTNNA2_uc010ysg.1_Silent_p.A592A|CTNNA2_uc010ysi.1_Silent_p.A224A	NM_004389	NP_004380	P26232	CTNA2_HUMAN	catenin, alpha 2 isoform 1	592					axonogenesis|brain morphogenesis|cell-cell adhesion|dendrite morphogenesis|muscle cell differentiation|positive regulation of muscle cell differentiation|prepulse inhibition|radial glia guided migration of Purkinje cell|regulation of synapse structural plasticity	actin cytoskeleton|axon|cytosol	cadherin binding|structural constituent of cytoskeleton			pancreas(4)|lung(3)|breast(1)|skin(1)	9						TAGAGGTTGCCATTGAAGCCC	0.478													27	75					3.73988e-18	4.68178e-18	1	0
Unknown	0	broad.mit.edu	37	2	89495619	89495619	+	RNA	SNP	C	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr2:89495619C>T	uc010ytr.1	-	25		c.3242G>A			uc002stl.2_Intron					Parts of antibodies, mostly variable regions.																		TCAGCCTCCACCCGGCTGATT	0.517													18	60					0	0	0	0
CNGA3	1261	broad.mit.edu	37	2	99013556	99013556	+	Missense_Mutation	SNP	G	C	C			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr2:99013556G>C	uc002syt.2	+	8	2340	c.1923G>C	c.(1921-1923)CAG>CAC	p.Q641H	CNGA3_uc002syu.2_Missense_Mutation_p.Q623H|CNGA3_uc010fij.2_Missense_Mutation_p.Q645H	NM_001298	NP_001289	Q16281	CNGA3_HUMAN	cyclic nucleotide gated channel alpha 3 isoform	641					signal transduction|visual perception	integral to membrane	cGMP binding			ovary(5)|upper_aerodigestive_tract(1)	6						ACACCCTGCAGACCAGGTTTG	0.612													9	21					0	0	0	0
AFF3	3899	broad.mit.edu	37	2	100209870	100209870	+	Missense_Mutation	SNP	G	C	C			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr2:100209870G>C	uc002tag.2	-	14	2489	c.2253C>G	c.(2251-2253)AAC>AAG	p.N751K	AFF3_uc002taf.2_Missense_Mutation_p.N776K|AFF3_uc010fiq.1_Missense_Mutation_p.N751K|AFF3_uc010yvr.1_Missense_Mutation_p.N904K|AFF3_uc002tah.1_Missense_Mutation_p.N776K	NM_002285	NP_002276	P51826	AFF3_HUMAN	AF4/FMR2 family, member 3 isoform 1	751					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(2)|pancreas(1)|lung(1)|kidney(1)|skin(1)	6						AGAGAAGTTCGTTCCGGCCAA	0.582													16	56					0	0	0	0
RANBP2	5903	broad.mit.edu	37	2	109381511	109381511	+	Missense_Mutation	SNP	A	G	G			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr2:109381511A>G	uc002tem.3	+	20	4642	c.4516A>G	c.(4516-4518)AGA>GGA	p.R1506G		NM_006267	NP_006258	P49792	RBP2_HUMAN	RAN binding protein 2	1506	RanBP2-type 3.				carbohydrate metabolic process|glucose transport|mitotic prometaphase|mRNA transport|protein folding|protein import into nucleus|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|nuclear pore	peptidyl-prolyl cis-trans isomerase activity|Ran GTPase binding|zinc ion binding		RANBP2/ALK(16)	soft_tissue(16)|lung(1)|pancreas(1)	18						TCAGAATCCGAGAAAACAGAG	0.403													25	72					0	0	0	0
MERTK	10461	broad.mit.edu	37	2	112758861	112758861	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr2:112758861C>G	uc002thk.1	+	11	1810	c.1688C>G	c.(1687-1689)ACC>AGC	p.T563S	MERTK_uc002thl.1_Missense_Mutation_p.T387S	NM_006343	NP_006334	Q12866	MERTK_HUMAN	MER receptor tyrosine kinase precursor	563	Cytoplasmic (Potential).				cell surface receptor linked signaling pathway|cell-cell signaling|leukocyte migration	integral to plasma membrane|soluble fraction	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(6)|upper_aerodigestive_tract(1)|stomach(1)|kidney(1)	9						ATTGAACTTACCTGTAAGTTG	0.368													20	39					0	0	0	0
PCDP1	200373	broad.mit.edu	37	2	120395992	120395992	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr2:120395992C>T	uc002tmb.2	+	21	2366	c.1274C>T	c.(1273-1275)ACG>ATG	p.T425M		NM_001029996	NP_001025167	Q4G0U5	PCDP1_HUMAN	primary ciliary dyskinesia protein 1	711						cilium	calmodulin binding				0	Colorectal(110;0.196)					CTCCATCACACGGTAATGTCA	0.537													30	77					0	0	0	0
LOC401010	401010	broad.mit.edu	37	2	132200724	132200724	+	Missense_Mutation	SNP	G	C	C			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr2:132200724G>C	uc002tst.2	-	1	1744	c.1278C>G	c.(1276-1278)AAC>AAG	p.N426K		NR_002826				SubName: Full=cDNA FLJ12694 fis, clone NT2RP1000358, highly similar to Homo sapiens mRNA; cDNA DKFZp564C186 (from clone DKFZp564C186);												0						TGTGTTCCGAGTTCTCCTGAA	0.637													10	10					0	0	0	0
THSD7B	80731	broad.mit.edu	37	2	138414380	138414380	+	Missense_Mutation	SNP	A	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr2:138414380A>T	uc002tva.1	+	22	4033	c.4033A>T	c.(4033-4035)ACA>TCA	p.T1345S	THSD7B_uc010zbj.1_Intron	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		CTGCCATTTAACAGAATGGTC	0.468													11	13					0	0	0	0
LRP1B	53353	broad.mit.edu	37	2	141108534	141108534	+	Missense_Mutation	SNP	A	C	C			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr2:141108534A>C	uc002tvj.1	-	77	12696	c.11724T>G	c.(11722-11724)AGT>AGG	p.S3908R		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	3908	Extracellular (Potential).				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		GATGATCGCCACTGTAGTTGA	0.303										TSP Lung(27;0.18)			37	94					0	0	0	0
PABPC1P2	728773	broad.mit.edu	37	2	147346027	147346027	+	Missense_Mutation	SNP	C	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr2:147346027C>A	uc002twf.3	+	1	1403	c.487C>A	c.(487-489)CCA>ACA	p.P163T		NR_026904				RecName: Full=Putative protein PABPC1-like; AltName: Full=Polyadenylate-binding protein pseudogene 2;												0						TTTCTCCTCCCCAGAAGAAGT	0.433													8	10					0.00448238	0.00453606	1	0
ACVR1	90	broad.mit.edu	37	2	158617405	158617405	+	Silent	SNP	C	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr2:158617405C>T	uc002tzm.3	-	10	1590	c.1251G>A	c.(1249-1251)CGG>CGA	p.R417R	ACVR1_uc002tzn.3_Silent_p.R417R|ACVR1_uc010fog.2_Silent_p.R417R	NM_001111067	NP_001104537	Q04771	ACVR1_HUMAN	activin A receptor, type I precursor	417	Cytoplasmic (Potential).|Protein kinase.				BMP signaling pathway|G1/S transition of mitotic cell cycle|negative regulation of activin receptor signaling pathway|negative regulation of apoptosis|positive regulation of bone mineralization|positive regulation of osteoblast differentiation|positive regulation of transcription, DNA-dependent|transforming growth factor beta receptor signaling pathway	activin receptor complex	activin binding|ATP binding|follistatin binding|metal ion binding|protein homodimerization activity|SMAD binding|transforming growth factor beta binding			ovary(2)|skin(1)	3				BRCA - Breast invasive adenocarcinoma(221;0.104)	Adenosine triphosphate(DB00171)	TGCTCACCATCCGCCTGGCCA	0.408													17	27					0	0	0	0
PSMD14	10213	broad.mit.edu	37	2	162224019	162224019	+	Missense_Mutation	SNP	A	G	G			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr2:162224019A>G	uc002ubu.2	+	4	546	c.79A>G	c.(79-81)ACA>GCA	p.T27A		NM_005805	NP_005796	O00487	PSDE_HUMAN	proteasome 26S subunit, non-ATPase 14	27	MPN.				anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein K63-linked deubiquitination|regulation of apoptosis|regulation of cellular amino acid metabolic process|regulation of proteasomal protein catabolic process|S phase of mitotic cell cycle|viral reproduction	proteasome complex	endopeptidase activator activity|metal ion binding|metallopeptidase activity|proteasome binding|ubiquitin thiolesterase activity			breast(1)	1						TGCAGTGGACACAGCAGAACA	0.358													6	8					0	0	0	0
TBR1	10716	broad.mit.edu	37	2	162280128	162280128	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr2:162280128C>T	uc002ubw.1	+	6	1741	c.1439C>T	c.(1438-1440)TCG>TTG	p.S480L	TBR1_uc010foy.2_Missense_Mutation_p.S193L	NM_006593	NP_006584	Q16650	TBR1_HUMAN	T-box, brain, 1	480						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|central_nervous_system(1)	2						GGCGCGCCCTCGCCGCAACGC	0.622													2	4					0	0	0	0
SCN3A	6328	broad.mit.edu	37	2	165946938	165946938	+	Missense_Mutation	SNP	G	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr2:165946938G>T	uc002ucx.2	-	28	6217	c.5725C>A	c.(5725-5727)CGT>AGT	p.R1909S	SCN3A_uc010zcy.1_Missense_Mutation_p.R392S|SCN3A_uc002ucy.2_Missense_Mutation_p.R1860S|SCN3A_uc002ucz.2_Missense_Mutation_p.R1860S	NM_006922	NP_008853	Q9NY46	SCN3A_HUMAN	sodium channel, voltage-gated, type III, alpha	1909	IQ.					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10					Lamotrigine(DB00555)	CTGAAATTACGCTGAATGATA	0.358													16	31					6.31663e-08	6.88716e-08	1	0
SCN7A	6332	broad.mit.edu	37	2	167330398	167330398	+	Silent	SNP	G	C	C			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr2:167330398G>C	uc002udu.1	-	4	481	c.354C>G	c.(352-354)CCC>CCG	p.P118P	SCN7A_uc010fpm.1_RNA	NM_002976	NP_002967	Q01118	SCN7A_HUMAN	sodium channel, voltage-gated, type VII, alpha	118	Helical; Name=S1 of repeat I; (By similarity).				muscle contraction	voltage-gated sodium channel complex	voltage-gated sodium channel activity			large_intestine(1)	1						GTTGGAAAAAGGTAGCTTATA	0.244													28	45					0	0	0	0
ABCB11	8647	broad.mit.edu	37	2	169814479	169814479	+	Missense_Mutation	SNP	G	C	C			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr2:169814479G>C	uc002ueo.1	-	19	2464	c.2338C>G	c.(2338-2340)CTT>GTT	p.L780V	ABCB11_uc010zda.1_Missense_Mutation_p.L222V|ABCB11_uc010zdb.1_Missense_Mutation_p.L256V	NM_003742	NP_003733	O95342	ABCBB_HUMAN	ATP-binding cassette, sub-family B (MDR/TAP),	780	Extracellular (Potential).|ABC transmembrane type-1 2.				bile acid biosynthetic process	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus|membrane fraction	ATP binding|bile acid-exporting ATPase activity|canalicular bile acid transmembrane transporter activity|sodium-exporting ATPase activity, phosphorylative mechanism			ovary(2)|large_intestine(2)|breast(1)	5					Adenosine triphosphate(DB00171)|Bosentan(DB00559)|Glibenclamide(DB01016)	CTTACCCCAAGAATCTGGCTG	0.423													14	24					0	0	0	0
LRP2	4036	broad.mit.edu	37	2	170030530	170030530	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr2:170030530C>T	uc002ues.2	-	56	11126	c.10913G>A	c.(10912-10914)GGC>GAC	p.G3638D		NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	3638	LDL-receptor class A 29.|Extracellular (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	CCGAAACTGGCCCGGCCGGCA	0.547													25	62					0	0	0	0
HOXD12	3238	broad.mit.edu	37	2	176964836	176964836	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr2:176964836C>T	uc010zev.1	+	1	307	c.307C>T	c.(307-309)CCC>TCC	p.P103S	HOXD12_uc010zew.1_Missense_Mutation_p.P103S	NM_021193	NP_067016	P35452	HXD12_HUMAN	homeobox D12	103						nuclear chromosome	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0			OV - Ovarian serous cystadenocarcinoma(117;0.0207)|Epithelial(96;0.18)	Colorectal(32;0.0521)|READ - Rectum adenocarcinoma(9;0.0678)		GTTCTATGCGCCCGAAGCGGC	0.692													7	14					0	0	0	0
AGPS	8540	broad.mit.edu	37	2	178364423	178364423	+	Missense_Mutation	SNP	T	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr2:178364423T>A	uc002ull.2	+	14	1487	c.1440T>A	c.(1438-1440)CAT>CAA	p.H480Q	AGPS_uc010zfb.1_Missense_Mutation_p.H390Q	NM_003659	NP_003650	O00116	ADAS_HUMAN	alkyldihydroxyacetone phosphate synthase	480					ether lipid biosynthetic process	peroxisomal matrix|peroxisomal membrane|plasma membrane	alkylglycerone-phosphate synthase activity|flavin adenine dinucleotide binding|oxidoreductase activity			ovary(2)|central_nervous_system(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.0018)|Epithelial(96;0.00919)|all cancers(119;0.0358)			TTCTTCAACATGAAAAACAAG	0.279													34	79					0	0	0	0
TTN	7273	broad.mit.edu	37	2	179472265	179472265	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr2:179472265C>T	uc010zfg.1	-	226	45670	c.45446G>A	c.(45445-45447)CGT>CAT	p.R15149H	uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.R8844H|TTN_uc010zfi.1_Missense_Mutation_p.R8777H|TTN_uc010zfj.1_Missense_Mutation_p.R8652H	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	16076							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TATTACAACACGGTCTTTATC	0.433													123	254					0	0	0	0
TTN	7273	broad.mit.edu	37	2	179497260	179497260	+	Silent	SNP	G	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr2:179497260G>A	uc010zfg.1	-	184	35993	c.35769C>T	c.(35767-35769)ATC>ATT	p.I11923I	TTN_uc010zfh.1_Silent_p.I5618I|TTN_uc010zfi.1_Silent_p.I5551I|TTN_uc010zfj.1_Silent_p.I5426I	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	12850							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TACCTTCAATGATCAGTTTGC	0.323													14	37					0	0	0	0
CCDC141	285025	broad.mit.edu	37	2	179702443	179702443	+	Missense_Mutation	SNP	C	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr2:179702443C>A	uc002unf.1	-	13	1835	c.1778G>T	c.(1777-1779)GGC>GTC	p.G593V	CCDC141_uc002une.1_Missense_Mutation_p.G43V	NM_173648	NP_775919	Q6ZP82	CC141_HUMAN	coiled-coil domain containing 141	593							protein binding			ovary(7)|pancreas(2)|skin(1)	10			OV - Ovarian serous cystadenocarcinoma(117;0.0274)|Epithelial(96;0.0531)|all cancers(119;0.147)			TCCATTGATGCCCAAAAGATC	0.468													34	69					1.49673e-21	1.926e-21	1	0
NRP2	8828	broad.mit.edu	37	2	206659496	206659496	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr2:206659496G>A	uc002vaw.2	+	17	3301	c.2510G>A	c.(2509-2511)TGG>TAG	p.W837*	NRP2_uc002vax.2_Nonsense_Mutation_p.W832*|NRP2_uc002vay.2_Nonsense_Mutation_p.W815*	NM_201266	NP_957718	O60462	NRP2_HUMAN	neuropilin 2 isoform 1 precursor	837	Extracellular (Potential).				angiogenesis|axon guidance|cell adhesion	integral to membrane|membrane fraction|plasma membrane	heparin binding|metal ion binding|semaphorin receptor activity|vascular endothelial growth factor receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4						GAGGTGGACTGGAGCAATTCT	0.532													36	67					0	0	0	0
C2orf67	151050	broad.mit.edu	37	2	210968871	210968871	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr2:210968871G>A	uc002vds.2	-	4	1593	c.1385C>T	c.(1384-1386)TCA>TTA	p.S462L	C2orf67_uc002vdt.2_Missense_Mutation_p.S462L|C2orf67_uc002vdw.2_Missense_Mutation_p.S462L|C2orf67_uc002vdv.2_Missense_Mutation_p.S462L|C2orf67_uc002vdx.1_Missense_Mutation_p.S462L	NM_152519	NP_689732	A0AUZ9	CB067_HUMAN	hypothetical protein LOC151050	462										ovary(3)	3		Renal(323;0.202)		Epithelial(149;0.00435)|Lung(261;0.0529)|LUSC - Lung squamous cell carcinoma(261;0.0551)|all cancers(144;0.0696)		GCTGCTTGGTGACATTTCAAA	0.393													17	36					0	0	0	0
ABCB6	10058	broad.mit.edu	37	2	220079138	220079138	+	Silent	SNP	T	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr2:220079138T>A	uc002vkc.1	-	7	1636	c.1359A>T	c.(1357-1359)GCA>GCT	p.A453A	ABCB6_uc010fwe.1_Silent_p.A407A|ABCB6_uc010zku.1_RNA	NM_005689	NP_005680	Q9NP58	ABCB6_HUMAN	ATP-binding cassette, sub-family B, member 6	453	ABC transmembrane type-1.				cadmium ion transmembrane transport|cellular iron ion homeostasis|detoxification of cadmium ion|porphyrin biosynthetic process	ATP-binding cassette (ABC) transporter complex|Golgi apparatus|integral to mitochondrial outer membrane|plasma membrane|vacuolar membrane	ATP binding|efflux transmembrane transporter activity|heme binding|heme-transporting ATPase activity			breast(1)|central_nervous_system(1)	2		Renal(207;0.0474)		Epithelial(149;1.22e-06)|all cancers(144;0.000201)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		GAGAGTCCACTGCTCGTGCCC	0.577													33	82					0	0	0	0
PTPRN	5798	broad.mit.edu	37	2	220161532	220161532	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr2:220161532C>G	uc002vkz.2	-	16	2338	c.2249G>C	c.(2248-2250)CGC>CCC	p.R750P	PTPRN_uc010zlc.1_Missense_Mutation_p.R660P|PTPRN_uc002vla.2_Missense_Mutation_p.R721P|uc010zld.1_5'Flank|MIR153-1_hsa-mir-153-1|MI0000463_5'Flank	NM_002846	NP_002837	Q16849	PTPRN_HUMAN	protein tyrosine phosphatase, receptor type, N	750	Cytoplasmic (Potential).|Tyrosine-protein phosphatase.				response to reactive oxygen species	integral to plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			ovary(2)|lung(1)|skin(1)	4		Renal(207;0.0474)		Epithelial(149;4.22e-07)|all cancers(144;8.82e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)|STAD - Stomach adenocarcinoma(1183;0.0875)		CAGTTTTATGCGGGCATGGTC	0.617													14	41					0	0	0	0
FARSB	10056	broad.mit.edu	37	2	223464699	223464699	+	Silent	SNP	G	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr2:223464699G>T	uc002vne.1	-	16	1601	c.1566C>A	c.(1564-1566)CTC>CTA	p.L522L	FARSB_uc010zlq.1_Silent_p.L542L|FARSB_uc002vnf.1_Silent_p.L423L	NM_005687	NP_005678	Q9NSD9	SYFB_HUMAN	phenylalanyl-tRNA synthetase, beta subunit	522					phenylalanyl-tRNA aminoacylation	cytosol|soluble fraction	ATP binding|magnesium ion binding|phenylalanine-tRNA ligase activity|RNA binding			ovary(1)	1		Renal(207;0.0183)		Epithelial(121;3.47e-10)|all cancers(144;1.86e-07)|LUSC - Lung squamous cell carcinoma(224;0.00871)|Lung(261;0.011)	L-Phenylalanine(DB00120)	GAGGCACATCGAGCAACTGCA	0.453													49	119					2.53126e-37	3.48736e-37	1	0
SCG2	7857	broad.mit.edu	37	2	224463478	224463478	+	Missense_Mutation	SNP	T	C	C			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr2:224463478T>C	uc002vnm.2	-	2	656	c.523A>G	c.(523-525)AGG>GGG	p.R175G		NM_003469	NP_003460	P13521	SCG2_HUMAN	secretogranin II precursor	175					angiogenesis|endothelial cell migration|eosinophil chemotaxis|induction of positive chemotaxis|inflammatory response|MAPKKK cascade|negative regulation of apoptosis|negative regulation of endothelial cell proliferation|positive regulation of endothelial cell proliferation|protein secretion	extracellular space|stored secretory granule	chemoattractant activity|cytokine activity			ovary(1)	1		Renal(207;0.0112)|Lung NSC(271;0.0185)|all_lung(227;0.0271)		Epithelial(121;8.16e-11)|all cancers(144;4.66e-08)|Lung(261;0.00714)|LUSC - Lung squamous cell carcinoma(224;0.008)		GGGTTATCCCTGGAATTCTCT	0.423													60	91					0	0	0	0
CAPN10	11132	broad.mit.edu	37	2	241534667	241534667	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr2:241534667C>G	uc002vzk.1	+	7	1408	c.1224C>G	c.(1222-1224)AGC>AGG	p.S408R	CAPN10_uc010zoh.1_Missense_Mutation_p.S408R|CAPN10_uc002vzl.1_Missense_Mutation_p.S408R|CAPN10_uc002vzm.1_Intron|CAPN10_uc002vzn.1_Missense_Mutation_p.S280R|CAPN10_uc002vzo.1_RNA|CAPN10_uc010fzg.1_RNA|CAPN10_uc002vzp.1_RNA|CAPN10_uc002vzq.1_Intron	NM_023083	NP_075571	Q9HC96	CAN10_HUMAN	calpain 10 isoform a	408	Domain III 1.				actin cytoskeleton reorganization|cellular response to insulin stimulus|positive regulation of apoptosis|positive regulation of glucose import|positive regulation of insulin secretion|positive regulation of intracellular transport|proteolysis	cytosol|plasma membrane	calcium-dependent cysteine-type endopeptidase activity|cytoskeletal protein binding|SNARE binding			ovary(3)|large_intestine(2)|lung(1)	6		all_epithelial(40;1.72e-15)|Breast(86;2.14e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0294)|all_neural(83;0.0459)|Lung NSC(271;0.094)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;1.13e-31)|all cancers(36;3.24e-29)|OV - Ovarian serous cystadenocarcinoma(60;2.82e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;5.1e-06)|Lung(119;0.00168)|Colorectal(34;0.00495)|LUSC - Lung squamous cell carcinoma(224;0.00813)|COAD - Colon adenocarcinoma(134;0.032)		CTTCGTGGAGCCCAGCGAGCA	0.652													35	65					0	0	0	0
PLCB4	5332	broad.mit.edu	37	20	9434014	9434014	+	Silent	SNP	G	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr20:9434014G>A	uc002wnf.2	+	31	3001	c.2865G>A	c.(2863-2865)AAG>AAA	p.K955K	PLCB4_uc010gbw.1_Silent_p.K955K|PLCB4_uc010gbx.2_Silent_p.K967K|PLCB4_uc002wne.2_Silent_p.K955K|PLCB4_uc002wnh.2_Silent_p.K802K	NM_182797	NP_877949	Q15147	PLCB4_HUMAN	phospholipase C beta 4 isoform b	955					intracellular signal transduction|lipid catabolic process	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			skin(11)|ovary(3)|pancreas(1)	15						CCATGCAGAAGTTACACTGCA	0.428													41	58					0	0	0	0
GDAP1L1	78997	broad.mit.edu	37	20	42885925	42885925	+	Missense_Mutation	SNP	G	A	A	rs149151812		TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr20:42885925G>A	uc002xlq.2	+	2	380	c.313G>A	c.(313-315)GAC>AAC	p.D105N	GDAP1L1_uc002xlp.1_Missense_Mutation_p.D105N|GDAP1L1_uc010zwl.1_Missense_Mutation_p.D105N|GDAP1L1_uc010zwm.1_Missense_Mutation_p.D105N|GDAP1L1_uc010zwn.1_Intron	NM_024034	NP_076939	Q96MZ0	GD1L1_HUMAN	ganglioside-induced differentiation-associated	105	GST N-terminal.									large_intestine(1)	1		Myeloproliferative disorder(115;0.0122)	COAD - Colon adenocarcinoma(18;0.00189)			CATCCACCGCGACAACATCAT	0.617													18	48					0	0	0	0
MMP9	4318	broad.mit.edu	37	20	44641955	44641955	+	Silent	SNP	C	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr20:44641955C>A	uc002xqz.2	+	9	1411	c.1392C>A	c.(1390-1392)CCC>CCA	p.P464P		NM_004994	NP_004985	P14780	MMP9_HUMAN	matrix metalloproteinase 9 preproprotein	464					collagen catabolic process|macrophage differentiation|positive regulation of keratinocyte migration|proteolysis	extracellular space|proteinaceous extracellular matrix	collagen binding|metalloendopeptidase activity|zinc ion binding			ovary(1)|pancreas(1)	2		Myeloproliferative disorder(115;0.0122)			Glucosamine(DB01296)|Marimastat(DB00786)|Minocycline(DB01017)|Simvastatin(DB00641)	CCACGGCTCCCCCGACGGTCT	0.483											OREG0025990	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	76	147					6.11987e-43	8.50075e-43	1	0
PREX1	57580	broad.mit.edu	37	20	47248859	47248859	+	Missense_Mutation	SNP	G	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr20:47248859G>T	uc002xtw.1	-	35	4505	c.4482C>A	c.(4480-4482)AAC>AAA	p.N1494K	PREX1_uc002xtv.1_Missense_Mutation_p.N791K	NM_020820	NP_065871	Q8TCU6	PREX1_HUMAN	phosphatidylinositol-3,4,	1494					actin filament polymerization|apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|neutrophil activation|small GTPase mediated signal transduction|superoxide metabolic process	cytosol|plasma membrane	enzyme binding|phospholipid binding|Rho GTPase activator activity|Rho guanyl-nucleotide exchange factor activity			lung(3)|ovary(2)|pancreas(1)	6			BRCA - Breast invasive adenocarcinoma(12;0.0135)|Colorectal(8;0.198)			GGGACTGCGCGTTGATGTCCT	0.637													102	212					2.3733e-33	3.22591e-33	1	0
TMEM189-UBE2V1	387522	broad.mit.edu	37	20	48713232	48713232	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr20:48713232C>T	uc002xvf.2	-	6	978	c.817G>A	c.(817-819)GGG>AGG	p.G273R	UBE2V1_uc002xvb.2_Intron|UBE2V1_uc002xva.2_Missense_Mutation_p.G50R|UBE2V1_uc002xvc.2_Intron|UBE2V1_uc002xvd.2_Missense_Mutation_p.G73R|UBE2V1_uc002xve.2_Missense_Mutation_p.G73R	NM_199203	NP_954673	Q13404	UB2V1_HUMAN	TMEM189-UBE2V1 readthrough transcript	50					cell differentiation|innate immune response|MyD88-dependent toll-like receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of transcription, DNA-dependent|protein K63-linked ubiquitination|regulation of DNA repair|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleus|UBC13-UEV1A complex|ubiquitin ligase complex	acid-amino acid ligase activity|protein binding				0			BRCA - Breast invasive adenocarcinoma(9;8.29e-07)			ATTATCATCCCTGTCCATCTT	0.433													59	108					0	0	0	0
ATP9A	10079	broad.mit.edu	37	20	50346510	50346510	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr20:50346510C>A	uc002xwg.1	-	2	76	c.76G>T	c.(76-78)GAG>TAG	p.E26*	ATP9A_uc010gih.1_Nonsense_Mutation_p.E11*	NM_006045	NP_006036	O75110	ATP9A_HUMAN	ATPase, class II, type 9A	26	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(4)	4						CTCAGCCACTCGCAGCACCTG	0.602													37	128					7.05121e-23	9.19014e-23	1	0
OGFR	11054	broad.mit.edu	37	20	61438939	61438939	+	Missense_Mutation	SNP	G	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr20:61438939G>T	uc002ydj.2	+	2	257	c.222G>T	c.(220-222)AGG>AGT	p.R74S	OGFR_uc002ydk.2_Missense_Mutation_p.R57S|OGFR_uc002ydl.2_5'UTR	NM_007346	NP_031372	Q9NZT2	OGFR_HUMAN	opioid growth factor receptor	74				DAGDEDEESEEPRAARPSSFQSRMTGSRNWRATRDMCRYRH NYP -> GARRALGVLGQPGGLQMRLPERHGGPQGSLCLMD PCCPLSLALQ (in Ref. 5).	regulation of cell growth	cytoplasm|membrane|nucleus	opioid receptor activity				0	Breast(26;3.65e-08)					ACATGTGTAGGTATCGGCACA	0.582													17	32					1.10923e-09	1.23872e-09	1	0
DIDO1	11083	broad.mit.edu	37	20	61528097	61528097	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr20:61528097C>T	uc002ydr.1	-	7	2104	c.1840G>A	c.(1840-1842)GCC>ACC	p.A614T	DIDO1_uc002yds.1_Missense_Mutation_p.A614T|DIDO1_uc002ydt.1_Missense_Mutation_p.A614T|DIDO1_uc002ydu.1_Missense_Mutation_p.A614T	NM_033081	NP_149072	Q9BTC0	DIDO1_HUMAN	death inducer-obliterator 1 isoform c	614					apoptosis|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(3)|skin(3)	6	Breast(26;5.68e-08)					GCCGGTCCGGCCTGCCTGGCA	0.617													24	90					0	0	0	0
HSPA13	6782	broad.mit.edu	37	21	15753648	15753648	+	Missense_Mutation	SNP	C	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr21:15753648C>A	uc002yjt.2	-	2	311	c.242G>T	c.(241-243)GGA>GTA	p.G81V	HSPA13_uc011abx.1_5'UTR	NM_006948	NP_008879	P48723	HSP13_HUMAN	heat shock protein 70kDa family member 13	81						endoplasmic reticulum|microsome	ATP binding			kidney(1)	1						GCTTTCATATCCCACATATAC	0.398													43	30					6.33695e-27	8.36675e-27	1	0
COL18A1	80781	broad.mit.edu	37	21	46912604	46912604	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr21:46912604C>G	uc011afs.1	+	23	3457	c.3436C>G	c.(3436-3438)CGG>GGG	p.R1146G	COL18A1_uc002zhg.2_Missense_Mutation_p.R731G|COL18A1_uc002zhi.2_Missense_Mutation_p.R911G	NM_130444	NP_569711	P39060	COIA1_HUMAN	alpha 1 type XVIII collagen isoform 3 precursor	1146	Triple-helical region 5 (COL5).				cell adhesion|negative regulation of cell proliferation|organ morphogenesis|visual perception	collagen|extracellular space	extracellular matrix structural constituent|metal ion binding|protein binding			central_nervous_system(1)	1				Colorectal(79;0.0157)|READ - Rectum adenocarcinoma(84;0.0929)		TCCCCAGGGCCGGCCGGGTTT	0.701													32	39					0	0	0	0
P2RX6	9127	broad.mit.edu	37	22	21372348	21372348	+	Missense_Mutation	SNP	A	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr22:21372348A>T	uc010gsu.1	+	3	386	c.386A>T	c.(385-387)GAG>GTG	p.E129V	P2RX6_uc002ztz.2_Missense_Mutation_p.E103V|P2RX6_uc010gst.1_3'UTR|P2RX6_uc002zua.2_Intron|P2RX6_uc002zuc.1_RNA	NM_005446	NP_005437	O15547	P2RX6_HUMAN	purinergic receptor P2X6 isoform 1	129	Extracellular (Potential).				muscle contraction|protein homooligomerization	cell junction|cytoplasm|integral to plasma membrane	ATP binding|extracellular ATP-gated cation channel activity|identical protein binding|purinergic nucleotide receptor activity				0						AGATGCCCAGAGGTGAGTTTA	0.602													8	17					0	0	0	0
CCDC116	164592	broad.mit.edu	37	22	21991274	21991274	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr22:21991274G>A	uc002zve.2	+	5	1850	c.1757G>A	c.(1756-1758)CGT>CAT	p.R586H		NM_152612	NP_689825	Q8IYX3	CC116_HUMAN	coiled-coil domain containing 116	Error:Variant_position_missing_in_Q8IYX3_after_alignment										ovary(1)|skin(1)	2	Colorectal(54;0.105)					AATGAGGGCCGTGATAAAGCC	0.443													45	57					0	0	0	0
LOC96610	96610	broad.mit.edu	37	22	23040462	23040462	+	RNA	SNP	T	C	C	rs1312	by1000genomes	TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr22:23040462T>C	uc011aim.1	+	136		c.8482T>C								Parts of antibodies, mostly variable regions.												0						TGCTCCTCACTCTCCTCACTC	0.657													3	8					0	0	0	0
LOC96610	96610	broad.mit.edu	37	22	23199153	23199153	+	RNA	SNP	G	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr22:23199153G>A	uc011aim.1	+	316		c.13822G>A								Parts of antibodies, mostly variable regions.												0						CTGGCAATACGGCCTCCATGA	0.522													50	108					0	0	0	0
AP1B1	162	broad.mit.edu	37	22	29754923	29754923	+	Missense_Mutation	SNP	G	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr22:29754923G>T	uc003afj.2	-	5	501	c.317C>A	c.(316-318)GCA>GAA	p.A106E	AP1B1_uc003afi.2_Missense_Mutation_p.A106E|AP1B1_uc003afk.2_Missense_Mutation_p.A106E|AP1B1_uc003afl.2_Missense_Mutation_p.A106E	NM_001127	NP_001118	Q10567	AP1B1_HUMAN	adaptor-related protein complex 1 beta 1 subunit	106					endocytosis|intracellular protein transport|post-Golgi vesicle-mediated transport|regulation of defense response to virus by virus|viral reproduction	clathrin adaptor complex|clathrin coated vesicle membrane|cytosol|Golgi membrane|lysosomal membrane	protein binding|protein transporter activity			ovary(1)|skin(1)	2						GGTCCGCACTGCCAGGGCTCG	0.612													18	17					1.55795e-14	1.87175e-14	1	0
DEPDC5	9681	broad.mit.edu	37	22	32241081	32241081	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr22:32241081C>T	uc003als.2	+	30	2994	c.2852C>T	c.(2851-2853)ACG>ATG	p.T951M	DEPDC5_uc011als.1_Missense_Mutation_p.T882M|DEPDC5_uc011alu.1_Missense_Mutation_p.T960M|DEPDC5_uc011alv.1_RNA|DEPDC5_uc003alt.2_Missense_Mutation_p.T951M|DEPDC5_uc003alu.2_Missense_Mutation_p.T400M|DEPDC5_uc003alv.2_RNA|DEPDC5_uc011alw.1_Missense_Mutation_p.T281M|DEPDC5_uc003alw.2_Missense_Mutation_p.T249M|DEPDC5_uc011alx.1_Intron|DEPDC5_uc010gwk.2_Translation_Start_Site	NM_014662	NP_055477	O75140	DEPD5_HUMAN	DEP domain containing 5 isoform 1	951					intracellular signal transduction					ovary(4)|central_nervous_system(3)|pancreas(1)	8						AAGCGCATCACGGAGGGGGAG	0.602													38	86					0	0	0	0
SCN10A	6336	broad.mit.edu	37	3	38781085	38781085	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr3:38781085C>G	uc003ciq.2	-	14	2201	c.2201G>C	c.(2200-2202)TGC>TCC	p.C734S		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	734	Helical; Name=S3 of repeat II; (Potential).|II.				sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	GACGATGATGCAGTCAAAGAT	0.448													21	15					0	0	0	0
PBRM1	55193	broad.mit.edu	37	3	52613197	52613197	+	Missense_Mutation	SNP	C	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr3:52613197C>A	uc003des.2	-	21	3418	c.3406G>T	c.(3406-3408)GTG>TTG	p.V1136L	PBRM1_uc003dex.2_RNA|PBRM1_uc003deq.2_Missense_Mutation_p.V1136L|PBRM1_uc003der.2_Missense_Mutation_p.V1104L|PBRM1_uc003det.2_Missense_Mutation_p.V1151L|PBRM1_uc003deu.2_Missense_Mutation_p.V1151L|PBRM1_uc003dev.2_RNA|PBRM1_uc003dew.2_Missense_Mutation_p.V1136L|PBRM1_uc010hmk.1_Missense_Mutation_p.V1111L|PBRM1_uc003dey.2_Missense_Mutation_p.V1111L|PBRM1_uc003dez.1_Missense_Mutation_p.V1135L	NM_181042	NP_060635	Q86U86	PB1_HUMAN	polybromo 1 isoform 4	1136					chromatin remodeling|mitosis|negative regulation of cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear chromosome	chromatin binding|DNA binding|protein binding			kidney(136)|breast(4)	140				BRCA - Breast invasive adenocarcinoma(193;1.8e-05)|Kidney(197;0.00105)|KIRC - Kidney renal clear cell carcinoma(197;0.00122)|OV - Ovarian serous cystadenocarcinoma(275;0.0613)		GACATTTCCACAGGGACATCT	0.423			Mis|N|F|S|D|O		clear cell renal carcinoma|breast								25	24					8.4185e-14	9.97239e-14	1	0
MAGI1	9223	broad.mit.edu	37	3	65428515	65428515	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr3:65428515G>A	uc003dmn.2	-	8	1614	c.1088C>T	c.(1087-1089)GCT>GTT	p.A363V	MAGI1_uc003dmm.2_Missense_Mutation_p.A363V|MAGI1_uc003dmo.2_Missense_Mutation_p.A363V|MAGI1_uc003dmp.2_Missense_Mutation_p.A363V|MAGI1_uc010hny.2_Missense_Mutation_p.A248V	NM_001033057	NP_001028229	Q96QZ7	MAGI1_HUMAN	membrane associated guanylate kinase, WW and PDZ	363	WW 2.				cell adhesion|cell surface receptor linked signaling pathway|protein complex assembly	tight junction	ATP binding|protein C-terminus binding			lung(2)|skin(1)|breast(1)|kidney(1)|pancreas(1)	6		Lung NSC(201;0.0016)		BRCA - Breast invasive adenocarcinoma(55;0.00138)|KIRC - Kidney renal clear cell carcinoma(15;0.0988)|Kidney(15;0.133)		TTCCCAACCAGCAGGCAGTTC	0.378													32	26					0	0	0	0
TMF1	7110	broad.mit.edu	37	3	69073259	69073259	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr3:69073259C>T	uc003dnn.2	-	16	3332	c.3085G>A	c.(3085-3087)GAT>AAT	p.D1029N	TMF1_uc011bfx.1_Missense_Mutation_p.D1032N	NM_007114	NP_009045	P82094	TMF1_HUMAN	TATA element modulatory factor 1	1029	Potential.				regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	Golgi membrane|nucleus	DNA binding|protein binding|transcription cofactor activity				0		Lung NSC(201;0.0193)|Prostate(884;0.174)		BRCA - Breast invasive adenocarcinoma(55;4.48e-05)|Epithelial(33;0.000274)|LUSC - Lung squamous cell carcinoma(21;0.0123)|KIRC - Kidney renal clear cell carcinoma(39;0.211)|Kidney(39;0.247)		TCAAGTTCATCATTTTGATTT	0.323													28	14					0	0	0	0
CADM2	253559	broad.mit.edu	37	3	86010637	86010637	+	Missense_Mutation	SNP	G	C	C			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr3:86010637G>C	uc003dqj.2	+	7	1409	c.783G>C	c.(781-783)TGG>TGC	p.W261C	CADM2_uc003dqk.2_Missense_Mutation_p.W270C|CADM2_uc003dql.2_Missense_Mutation_p.W263C	NM_153184	NP_694854	Q8N3J6	CADM2_HUMAN	immunoglobulin superfamily, member 4D	261	Ig-like C2-type 2.|Extracellular (Potential).				adherens junction organization|cell junction assembly	integral to membrane|plasma membrane				ovary(1)|lung(1)|kidney(1)|skin(1)	4		Lung NSC(201;0.0148)		LUSC - Lung squamous cell carcinoma(29;0.000815)|Lung(72;0.00304)|BRCA - Breast invasive adenocarcinoma(55;0.156)|Epithelial(33;0.157)		CTGTTTTGTGGACAAAGGATG	0.348													40	45					0	0	0	0
Unknown	0	broad.mit.edu	37	3	95374211	95374211	+	RNA	SNP	C	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr3:95374211C>T	uc003dro.1	-	5		c.1651G>A								Homo sapiens cDNA FLJ34909 fis, clone NT2RI2009301, moderately similar to BIFUNCTIONAL METHYLENETETRAHYDROFOLATE DEHYDROGENASE/CYCLOHYDROLASE, MITOCHONDRIAL PRECURSOR.																		TTCATGCACCCCACGTATGTG	0.418													14	23					0	0	0	0
BBX	56987	broad.mit.edu	37	3	107492462	107492462	+	Missense_Mutation	SNP	C	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr3:107492462C>A	uc010hpr.2	+	11	2221	c.1894C>A	c.(1894-1896)CTG>ATG	p.L632M	BBX_uc003dwk.3_Missense_Mutation_p.L632M|BBX_uc003dwl.3_Intron|BBX_uc010hps.1_Missense_Mutation_p.L653M|BBX_uc003dwm.3_Missense_Mutation_p.L632M|BBX_uc003dwo.3_5'Flank	NM_001142568	NP_001136040	Q8WY36	BBX_HUMAN	HMG-BOX transcription factor BBX isoform 1	632					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(3)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(3;0.112)			GCTCACCTCTCTGCGAGCTAA	0.413													9	22					1.58986e-06	1.68986e-06	1	0
GUCA1C	9626	broad.mit.edu	37	3	108635029	108635029	+	Silent	SNP	C	G	G			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr3:108635029C>G	uc003dxj.2	-	3	455	c.387G>C	c.(385-387)CTG>CTC	p.L129L	GUCA1C_uc003dxk.2_Silent_p.L129L	NM_005459	NP_005450	O95843	GUC1C_HUMAN	guanylate cyclase activator 1C	129					signal transduction|visual perception		calcium ion binding|calcium sensitive guanylate cyclase activator activity				0						CTTCAGGACTCAGAGTTTGCT	0.398													38	74					0	0	0	0
DPPA2	151871	broad.mit.edu	37	3	109023501	109023501	+	Silent	SNP	C	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr3:109023501C>A	uc003dxo.2	-	7	922	c.675G>T	c.(673-675)GTG>GTT	p.V225V		NM_138815	NP_620170	Q7Z7J5	DPPA2_HUMAN	developmental pluripotency associated 2	225						nucleus	nucleic acid binding			ovary(2)|upper_aerodigestive_tract(1)	3						TGCCATGGACCACACACCACC	0.498													14	53					0.00244969	0.00249898	1	0
LSAMP	4045	broad.mit.edu	37	3	115805400	115805400	+	Silent	SNP	G	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr3:115805400G>A	uc003ebt.2	-	2	659	c.159C>T	c.(157-159)TGC>TGT	p.C53C	LSAMP_uc011bis.1_Silent_p.C53C	NM_002338	NP_002329	Q13449	LSAMP_HUMAN	limbic system-associated membrane protein	53	Ig-like C2-type 1.				cell adhesion|nervous system development	anchored to membrane|plasma membrane					0		all_cancers(1;0.00189)|all_epithelial(1;0.0366)|Myeloproliferative disorder(1037;0.17)|all_neural(597;0.208)|Lung NSC(201;0.215)		GBM - Glioblastoma multiforme(114;0.00117)|LUSC - Lung squamous cell carcinoma(41;0.0407)|Lung(219;0.152)		CTTCTACAACGCACCTGACAG	0.448													13	32					0	0	0	0
PLXNA1	5361	broad.mit.edu	37	3	126751566	126751566	+	Missense_Mutation	SNP	G	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr3:126751566G>T	uc003ejg.2	+	30	5417	c.5413G>T	c.(5413-5415)GAC>TAC	p.D1805Y	PLXNA1_uc003ejh.2_Missense_Mutation_p.D473Y	NM_032242	NP_115618	Q9UIW2	PLXA1_HUMAN	plexin A1	1828	Cytoplasmic (Potential).				axon guidance	integral to membrane|intracellular|plasma membrane	semaphorin receptor activity			ovary(1)|pancreas(1)|skin(1)	3				GBM - Glioblastoma multiforme(114;0.155)		AGCCATCAGCGACCAGGACAT	0.612													38	77					7.61001e-30	1.01534e-29	1	0
EEFSEC	60678	broad.mit.edu	37	3	128060317	128060317	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr3:128060317C>T	uc003eki.2	+	5	1066	c.1028C>T	c.(1027-1029)ACA>ATA	p.T343I	EEFSEC_uc003ekj.2_Missense_Mutation_p.T288I	NM_021937	NP_068756	P57772	SELB_HUMAN	eukaryotic elongation factor,	343						cytoplasm|nucleus	GTP binding|GTPase activity|translation elongation factor activity			ovary(1)	1						GGCCATGAAACAGTCATGGGC	0.502													19	35					0	0	0	0
CPNE4	131034	broad.mit.edu	37	3	131293958	131293958	+	Missense_Mutation	SNP	G	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr3:131293958G>T	uc003eok.2	-	10	1319	c.884C>A	c.(883-885)TCT>TAT	p.S295Y	CPNE4_uc011blq.1_Missense_Mutation_p.S313Y|CPNE4_uc003eol.2_Missense_Mutation_p.S313Y|CPNE4_uc003eom.2_Missense_Mutation_p.S295Y	NM_130808	NP_570720	Q96A23	CPNE4_HUMAN	copine IV	295										upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3						GTCCAAGAAAGAATGCATCTT	0.418													29	74					6.02846e-25	7.87739e-25	1	0
CLSTN2	64084	broad.mit.edu	37	3	140178481	140178481	+	Silent	SNP	C	G	G			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr3:140178481C>G	uc003etn.2	+	7	1282	c.1092C>G	c.(1090-1092)GCC>GCG	p.A364A	CLSTN2_uc003etm.2_Silent_p.A364A	NM_022131	NP_071414	Q9H4D0	CSTN2_HUMAN	calsyntenin 2 precursor	364	Extracellular (Potential).				homophilic cell adhesion	endoplasmic reticulum membrane|Golgi membrane|integral to membrane|plasma membrane	calcium ion binding			skin(3)|large_intestine(2)|pancreas(1)|central_nervous_system(1)	7						GGCAGGGTGCCAAAGTCCCCG	0.577										HNSCC(16;0.037)			16	36					0	0	0	0
CLSTN2	64084	broad.mit.edu	37	3	140277487	140277487	+	Missense_Mutation	SNP	T	C	C			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr3:140277487T>C	uc003etn.2	+	12	2019	c.1829T>C	c.(1828-1830)TTT>TCT	p.F610S		NM_022131	NP_071414	Q9H4D0	CSTN2_HUMAN	calsyntenin 2 precursor	610	Extracellular (Potential).				homophilic cell adhesion	endoplasmic reticulum membrane|Golgi membrane|integral to membrane|plasma membrane	calcium ion binding			skin(3)|large_intestine(2)|pancreas(1)|central_nervous_system(1)	7						CCCAGGTGCTTTGGGGAAGAC	0.527										HNSCC(16;0.037)			18	55					0	0	0	0
HLTF	6596	broad.mit.edu	37	3	148793756	148793756	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr3:148793756C>T	uc003ewq.1	-	3	525	c.307G>A	c.(307-309)GTG>ATG	p.V103M	HLTF_uc003ewr.1_Missense_Mutation_p.V103M|HLTF_uc003ews.1_Missense_Mutation_p.V103M|HLTF_uc010hve.1_Missense_Mutation_p.V103M	NM_139048	NP_620636	Q14527	HLTF_HUMAN	helicase-like transcription factor	103					chromatin modification|transcription, DNA-dependent	nucleus	ATP binding|DNA binding|helicase activity|ligase activity|zinc ion binding			ovary(1)	1			LUSC - Lung squamous cell carcinoma(72;0.0473)|Lung(72;0.0607)			TTTCCATTCACATTGTTTACT	0.318													19	30					0	0	0	0
GPR171	29909	broad.mit.edu	37	3	150916479	150916479	+	Missense_Mutation	SNP	T	C	C			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr3:150916479T>C	uc003eyq.3	-	3	935	c.695A>G	c.(694-696)TAC>TGC	p.Y232C	MED12L_uc011bnz.1_Intron|MED12L_uc003eyp.2_Intron	NM_013308	NP_037440	O14626	GP171_HUMAN	G protein-coupled receptor 171	232	Helical; Name=6; (Potential).					integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled				0			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			GCATATGATGTAGCCCGTGGT	0.398													24	51					0	0	0	0
P2RY13	53829	broad.mit.edu	37	3	151046055	151046055	+	Silent	SNP	G	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr3:151046055G>A	uc003eyv.2	-	2	810	c.789C>T	c.(787-789)GTC>GTT	p.V263V	MED12L_uc011bnz.1_Intron|MED12L_uc003eyp.2_Intron	NM_176894	NP_795713	Q9BPV8	P2Y13_HUMAN	purinergic receptor P2Y, G-protein coupled, 13	263	Helical; Name=6; (Potential).					integral to membrane|plasma membrane				ovary(3)|lung(1)	4			LUSC - Lung squamous cell carcinoma(72;0.0189)|Lung(72;0.0278)			ACACAAAGAAGACAGCCACGA	0.343													17	45					0	0	0	0
SI	6476	broad.mit.edu	37	3	164735803	164735803	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr3:164735803C>T	uc003fei.2	-	29	3537	c.3475G>A	c.(3475-3477)GAG>AAG	p.E1159K		NM_001041	NP_001032	P14410	SUIS_HUMAN	sucrase-isomaltase	1159	Sucrase.|Lumenal.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|brush border|Golgi apparatus|integral to membrane	carbohydrate binding|oligo-1,6-glucosidase activity|sucrose alpha-glucosidase activity			ovary(7)|upper_aerodigestive_tract(4)|skin(2)|pancreas(1)	14		Prostate(884;0.00314)|Melanoma(1037;0.0153)|all_neural(597;0.0199)			Acarbose(DB00284)	GCATTGCCCTCCTCTTCCAGA	0.323										HNSCC(35;0.089)			27	52					0	0	0	0
SERPINI1	5274	broad.mit.edu	37	3	167508197	167508197	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr3:167508197G>A	uc003ffa.3	+	3	486	c.288G>A	c.(286-288)ATG>ATA	p.M96I	SERPINI1_uc003ffb.3_Missense_Mutation_p.M96I	NM_001122752	NP_001116224	Q99574	NEUS_HUMAN	neuroserpin precursor	96					central nervous system development|peripheral nervous system development|regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			skin(1)	1						TTTCAAACATGGTAACTGCTA	0.343													19	51					0	0	0	0
TBL1XR1	79718	broad.mit.edu	37	3	176744174	176744174	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr3:176744174G>A	uc003fiw.3	-	15	1765	c.1505C>T	c.(1504-1506)GCA>GTA	p.A502V	TBL1XR1_uc003fix.3_Missense_Mutation_p.A502V|TBL1XR1_uc011bpz.1_Missense_Mutation_p.A174V	NM_024665	NP_078941	Q9BZK7	TBL1R_HUMAN	transducin (beta)-like 1 X-linked receptor 1	502	WD 8.				canonical Wnt receptor signaling pathway|cellular lipid metabolic process|chromatin modification|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|proteasomal ubiquitin-dependent protein catabolic process|transcription, DNA-dependent	spindle microtubule|transcriptional repressor complex	beta-catenin binding|histone binding|protein N-terminus binding|transcription corepressor activity|transcription regulatory region DNA binding			ovary(1)	1	all_cancers(143;1.44e-17)|Ovarian(172;0.00163)|Breast(254;0.214)	Acute lymphoblastic leukemia(1;0.00599)|all_hematologic(1;0.0632)|Prostate(884;0.215)	OV - Ovarian serous cystadenocarcinoma(80;9.83e-31)			ACCATCTGATGCACTGGCTCC	0.418													21	41					0	0	0	0
FXR1	8087	broad.mit.edu	37	3	180630488	180630488	+	Silent	SNP	G	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr3:180630488G>T	uc003fkq.2	+	1	37	c.15G>T	c.(13-15)ACG>ACT	p.T5T	FXR1_uc003fkp.2_5'UTR|FXR1_uc003fkr.2_Silent_p.T5T|FXR1_uc011bqj.1_5'UTR|FXR1_uc003fks.2_5'UTR|FXR1_uc011bqk.1_Silent_p.T5T|FXR1_uc011bql.1_5'Flank	NM_005087	NP_005078	P51114	FXR1_HUMAN	fragile X mental retardation-related protein 1	5					apoptosis|cell differentiation|muscle organ development	nucleolus|polysome				breast(1)	1	all_cancers(143;6.07e-14)|Ovarian(172;0.0212)		Epithelial(37;3.05e-35)|OV - Ovarian serous cystadenocarcinoma(80;2.4e-22)			CGGAGCTGACGGTGGAGGTTC	0.458											OREG0015934	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	113	223					4.55767e-64	6.47265e-64	1	0
CPN2	1370	broad.mit.edu	37	3	194062679	194062679	+	Silent	SNP	G	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr3:194062679G>A	uc003fts.2	-	2	843	c.753C>T	c.(751-753)AAC>AAT	p.N251N		NM_001080513	NP_001073982	P22792	CPN2_HUMAN	carboxypeptidase N, polypeptide 2	251	LRR 7.				protein stabilization	extracellular region	enzyme regulator activity			ovary(5)	5	all_cancers(143;5.31e-09)|Ovarian(172;0.0634)		OV - Ovarian serous cystadenocarcinoma(49;2.2e-17)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;4.65e-05)		GCGTGATGGCGTTGCGTTGCA	0.602													28	76					0	0	0	0
LRRC15	131578	broad.mit.edu	37	3	194080603	194080603	+	Silent	SNP	G	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr3:194080603G>T	uc003ftu.2	-	2	1256	c.1170C>A	c.(1168-1170)GGC>GGA	p.G390G	LRRC15_uc003ftt.2_Silent_p.G396G	NM_130830	NP_570843	Q8TF66	LRC15_HUMAN	leucine rich repeat containing 15 isoform b	390	LRR 15.|Extracellular (Potential).					integral to membrane				ovary(3)	3	all_cancers(143;5.31e-09)|Ovarian(172;0.0634)		OV - Ovarian serous cystadenocarcinoma(49;2.2e-17)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;4.94e-05)		TGGCCATGAGGCCATTGACGT	0.562													17	21					2.48551e-13	2.91702e-13	1	0
ZNF721	170960	broad.mit.edu	37	4	435690	435690	+	Missense_Mutation	SNP	T	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr4:435690T>A	uc003gag.2	-	3	3257	c.2566A>T	c.(2566-2568)AGG>TGG	p.R856W	ABCA11P_uc003gac.2_Intron|ABCA11P_uc003gad.2_Intron|ABCA11P_uc011buv.1_Intron|ABCA11P_uc003gae.2_Intron|ABCA11P_uc010ibd.1_Intron|ZNF721_uc003gaf.3_Missense_Mutation_p.R888W|ZNF721_uc010ibe.2_Missense_Mutation_p.R844W	NM_133474	NP_597731	D9N162	D9N162_HUMAN	zinc finger protein 721	856						intracellular	nucleic acid binding|zinc ion binding			ovary(1)	1						TGAATTCTCCTATGTACATAA	0.393													16	35					0	0	0	0
MFSD7	84179	broad.mit.edu	37	4	680330	680330	+	Silent	SNP	G	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr4:680330G>A	uc003gay.2	-	2	342	c.285C>T	c.(283-285)CTC>CTT	p.L95L	MFSD7_uc003gaw.2_5'Flank|MFSD7_uc003gax.2_Silent_p.L95L|MFSD7_uc003gaz.2_Silent_p.L73L|MFSD7_uc003gba.2_Silent_p.L95L|MFSD7_uc003gbb.1_Silent_p.L31L	NM_032219	NP_115595	Q6UXD7	MFSD7_HUMAN	major facilitator superfamily domain containing	95					transmembrane transport	integral to membrane					0						CCGCCGCACGGAGCCCGACGG	0.657													48	91					0	0	0	0
RGS12	6002	broad.mit.edu	37	4	3419261	3419261	+	Silent	SNP	C	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr4:3419261C>T	uc003ggw.2	+	9	3658	c.2754C>T	c.(2752-2754)CAC>CAT	p.H918H	RGS12_uc010ics.1_Silent_p.H117H|RGS12_uc003ggv.2_Silent_p.H918H|RGS12_uc003ggy.1_Silent_p.H316H|RGS12_uc010ict.1_Silent_p.H270H|RGS12_uc003ggz.2_Silent_p.H270H|RGS12_uc010icu.1_Silent_p.H117H|RGS12_uc011bvs.1_Silent_p.H260H|RGS12_uc003gha.2_Silent_p.H260H|RGS12_uc010icv.2_Silent_p.H117H|RGS12_uc003ghb.2_Silent_p.H117H	NM_198229	NP_937872	O14924	RGS12_HUMAN	regulator of G-protein signalling 12 isoform 1	918						condensed nuclear chromosome|cytoplasm|plasma membrane	GTPase activator activity|receptor signaling protein activity			skin(1)	1				UCEC - Uterine corpus endometrioid carcinoma (64;0.168)		ACGGGGACCACGCAGACGGTT	0.667													15	36					0	0	0	0
MSX1	4487	broad.mit.edu	37	4	4864566	4864566	+	Missense_Mutation	SNP	C	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr4:4864566C>A	uc003gif.2	+	2	843	c.608C>A	c.(607-609)GCG>GAG	p.A203E		NM_002448	NP_002439	P28360	MSX1_HUMAN	msh homeobox 1	197	Homeobox.				apoptotic nuclear change|face morphogenesis|negative regulation of cell growth|odontogenesis of dentine-containing tooth|positive regulation of apoptosis|protein localization to nucleus|protein stabilization	nucleus	p53 binding|sequence-specific DNA binding transcription factor activity				0				UCEC - Uterine corpus endometrioid carcinoma (64;0.163)		GCCGAGCGCGCGGAGTTCTCC	0.627													29	37					2.08457e-15	2.54057e-15	1	0
EVC2	132884	broad.mit.edu	37	4	5696066	5696066	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr4:5696066C>T	uc003gij.2	-	3	500	c.446G>A	c.(445-447)CGC>CAC	p.R149H	EVC2_uc011bwb.1_5'UTR|EVC2_uc003gik.2_Missense_Mutation_p.R69H	NM_147127	NP_667338	Q86UK5	LBN_HUMAN	limbin	149						integral to membrane				large_intestine(3)|ovary(2)	5						ACTTACCAGGCGGTGTGTTAT	0.393													21	24					0	0	0	0
TLR6	10333	broad.mit.edu	37	4	38829447	38829447	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr4:38829447C>A	uc003gtm.2	-	1	1714	c.1648G>T	c.(1648-1650)GAA>TAA	p.E550*	TLR6_uc010ifg.1_Nonsense_Mutation_p.E550*	NM_006068	NP_006059	Q9Y2C9	TLR6_HUMAN	toll-like receptor 6 precursor	550	LRRCT.|Extracellular (Potential).				activation of NF-kappaB-inducing kinase activity|cellular response to diacyl bacterial lipopeptide|defense response to bacterium|detection of diacyl bacterial lipopeptide|inflammatory response|innate immune response|MyD88-dependent toll-like receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interleukin-6 biosynthetic process|positive regulation of JUN kinase activity|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	integral to plasma membrane|phagocytic vesicle membrane	lipopeptide binding|transmembrane receptor activity			ovary(2)	2						TCTAACACTTCACTTGATACT	0.413													94	211					1.54295e-31	2.075e-31	1	0
GRXCR1	389207	broad.mit.edu	37	4	43022383	43022383	+	Missense_Mutation	SNP	A	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr4:43022383A>T	uc003gwt.2	+	3	640	c.640A>T	c.(640-642)ATT>TTT	p.I214F		NM_001080476	NP_001073945	A8MXD5	GRCR1_HUMAN	glutaredoxin, cysteine rich 1	214	Glutaredoxin.				cell redox homeostasis|inner ear receptor stereocilium organization|sensory perception of sound|vestibular receptor cell development	kinocilium|stereocilium	electron carrier activity|protein disulfide oxidoreductase activity			ovary(1)	1						TGCTGAGAAAATTTTGTCAAT	0.323													13	33					0	0	0	0
YIPF7	285525	broad.mit.edu	37	4	44638095	44638095	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr4:44638095C>T	uc010ifx.1	-	3	213	c.196G>A	c.(196-198)GCT>ACT	p.A66T	YIPF7_uc010ify.1_Missense_Mutation_p.A66T	NM_182592	NP_872398	Q8N8F6	YIPF7_HUMAN	Yip1 domain family, member 7	66						endoplasmic reticulum membrane|integral to membrane					0						TGCTCACCAGCTTGTTGTCTA	0.383													11	18					0	0	0	0
GABRA2	2555	broad.mit.edu	37	4	46312211	46312211	+	Missense_Mutation	SNP	A	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr4:46312211A>T	uc003gxc.3	-	5	1211	c.538T>A	c.(538-540)TGT>AGT	p.C180S	GABRA2_uc010igc.2_Missense_Mutation_p.C180S|GABRA2_uc011bzc.1_Missense_Mutation_p.C125S|GABRA2_uc003gxe.2_Missense_Mutation_p.C180S	NM_001114175	NP_001107647	P47869	GBRA2_HUMAN	gamma-aminobutyric acid A receptor, alpha 2	180	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway|neurotransmitter transport|regulation of neurotransmitter levels	cell junction|chloride channel complex|integral to synaptic vesicle membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)|skin(2)	4					Alprazolam(DB00404)|Bromazepam(DB01558)|Diazepam(DB00829)|Ethchlorvynol(DB00189)|Fludiazepam(DB01567)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	TTCAGAGGACATGAATGAGCA	0.388													40	84					0	0	0	0
TMPRSS11B	132724	broad.mit.edu	37	4	69095162	69095162	+	Silent	SNP	G	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr4:69095162G>T	uc003hdw.3	-	8	895	c.759C>A	c.(757-759)GTC>GTA	p.V253V		NM_182502	NP_872308	Q86T26	TM11B_HUMAN	transmembrane protease, serine 11B	253	Peptidase S1.|Extracellular (Potential).				proteolysis	extracellular region|integral to plasma membrane	serine-type endopeptidase activity			ovary(1)	1						TAATGTTTTGGACTTTCCGTG	0.333													21	33					3.8784e-16	4.79598e-16	1	0
Unknown	0	broad.mit.edu	37	4	69433850	69433850	+	IGR	SNP	C	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr4:69433850C>A								YTHDC1 (218026 upstream) : UGT2B15 (78466 downstream)																							AGAATATTCCCAACACAATTC	0.294													42	68					2.40228e-13	2.82588e-13	1	0
C4orf35	85438	broad.mit.edu	37	4	71201383	71201383	+	Missense_Mutation	SNP	T	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr4:71201383T>A	uc003hff.2	+	1	713	c.627T>A	c.(625-627)GAT>GAA	p.D209E		NM_033122	NP_149113	Q96KC9	CABS1_HUMAN	testis development protein NYD-SP26	209						flagellum	calcium ion binding				0		all_hematologic(202;0.196)				AGGTCACTGATTCCACTATTC	0.438													14	24					0	0	0	0
ALB	213	broad.mit.edu	37	4	74280805	74280805	+	Missense_Mutation	SNP	T	G	G			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr4:74280805T>G	uc003hgs.3	+	9	1185	c.1112T>G	c.(1111-1113)CTG>CGG	p.L371R	ALB_uc003hgw.3_Missense_Mutation_p.L179R|ALB_uc011cbe.1_Missense_Mutation_p.L50R|ALB_uc003hgt.3_Missense_Mutation_p.L371R|ALB_uc010iii.2_Missense_Mutation_p.L256R|ALB_uc003hgu.3_Missense_Mutation_p.L221R|ALB_uc003hgv.3_Missense_Mutation_p.L50R|ALB_uc011cbf.1_Missense_Mutation_p.L261R|ALB_uc010iij.2_RNA|ALB_uc003hgx.3_Missense_Mutation_p.L50R	NM_000477	NP_000468	P02768	ALBU_HUMAN	albumin preproprotein	371	Albumin 2.				bile acid and bile salt transport|bile acid metabolic process|cellular response to starvation|hemolysis by symbiont of host erythrocytes|lipoprotein metabolic process|maintenance of mitochondrion location|negative regulation of apoptosis|platelet activation|platelet degranulation|sodium-independent organic anion transport|transmembrane transport	extracellular space|platelet alpha granule lumen|protein complex	antioxidant activity|chaperone binding|copper ion binding|DNA binding|drug binding|fatty acid binding|pyridoxal phosphate binding|toxin binding			ovary(3)|skin(3)	6	Breast(15;0.00102)		Epithelial(6;4.8e-05)|OV - Ovarian serous cystadenocarcinoma(6;0.000263)|all cancers(17;0.000472)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)		Acenocoumarol(DB01418)|Acitretin(DB00459)|Alfentanil(DB00802)|Aluminium(DB01370)|Auranofin(DB00995)|Bismuth(DB01402)|Captopril(DB01197)|Carboplatin(DB00958)|Cefalotin(DB00456)|Cefazolin(DB01327)|Cefonicid(DB01328)|Cefoperazone(DB01329)|Chlorpheniramine(DB01114)|Chlorpromazine(DB00477)|Ciprofloxacin(DB00537)|Clonazepam(DB01068)|Cloxacillin(DB01147)|Cytarabine(DB00987)|Dantrolene(DB01219)|Diclofenac(DB00586)|Diflunisal(DB00861)|Digitoxin(DB01396)|Estrone(DB00655)|Ethacrynic acid(DB00903)|Etodolac(DB00749)|Flurbiprofen(DB00712)|Gadobenate Dimeglumine(DB00743)|Gatifloxacin(DB01044)|Gliclazide(DB01120)|Halothane(DB01159)|Human Serum Albumin(DB00062)|Hyaluronidase(DB00070)|Ibuprofen(DB01050)|Insulin-detemir(DB01307)|Insulin-glargine(DB01308)|Iodipamide(DB04711)|Ketoprofen(DB01009)|Levamisole(DB00848)|Levothyroxine(DB00451)|Liothyronine(DB00279)|Mefenamic acid(DB00784)|Mephenytoin(DB00532)|Methotrexate(DB00563)|Nortriptyline(DB00540)|Oxazepam(DB00842)|Paclitaxel(DB01229)|Phenprocoumon(DB00946)|Probenecid(DB01032)|Propofol(DB00818)|Pyridoxine(DB00165)|Salicyclic acid(DB00936)|Saquinavir(DB01232)|Serum albumin(DB00096)|Serum albumin iodonated(DB00064)|Sodium lauryl sulfate(DB00815)|Sucralfate(DB00364)|Sulfamethizole(DB00576)|Sulindac(DB00605)|Suprofen(DB00870)|Testosterone(DB00624)|Xanthophyll(DB00137)	GTGCTGCTGCTGAGACTTGCC	0.398													37	74					0	0	0	0
HELQ	113510	broad.mit.edu	37	4	84328640	84328640	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr4:84328640G>A	uc003hom.2	-	18	3451	c.3272C>T	c.(3271-3273)CCT>CTT	p.P1091L	HELQ_uc010ikb.2_Missense_Mutation_p.P1024L|HELQ_uc003hol.3_RNA|HELQ_uc010ikc.2_RNA	NM_133636	NP_598375	Q8TDG4	HELQ_HUMAN	DNA helicase HEL308	1091							ATP binding|ATP-dependent helicase activity|nucleic acid binding			ovary(1)|breast(1)|skin(1)	3						CACAGCACCAGGGAAATCAGA	0.363								Direct_reversal_of_damage|Other_identified_genes_with_known_or_suspected_DNA_repair_function					11	33					0	0	0	0
UNC5C	8633	broad.mit.edu	37	4	96166251	96166251	+	Missense_Mutation	SNP	T	C	C			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr4:96166251T>C	uc003htp.1	-	6	974	c.820A>G	c.(820-822)AGC>GGC	p.S274G	UNC5C_uc010ilc.1_Missense_Mutation_p.S274G|UNC5C_uc003htq.2_Missense_Mutation_p.S274G	NM_003728	NP_003719	O95185	UNC5C_HUMAN	unc5C precursor	274	Extracellular (Potential).|TSP type-1 1.				apoptosis|axon guidance|brain development	integral to membrane	netrin receptor activity			ovary(3)|pancreas(1)	4		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;8.72e-10)		CCACAGCGGCTGTTACACACA	0.517													23	37					0	0	0	0
ANK2	287	broad.mit.edu	37	4	114275822	114275822	+	Silent	SNP	A	G	G			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr4:114275822A>G	uc003ibe.3	+	38	6148	c.6048A>G	c.(6046-6048)GCA>GCG	p.A2016A	ANK2_uc003ibd.3_Intron|ANK2_uc003ibf.3_Intron|ANK2_uc011cgc.1_Intron|ANK2_uc003ibg.3_Intron|ANK2_uc003ibh.3_Intron|ANK2_uc011cgd.1_5'Flank|ANK2_uc011cgb.1_Silent_p.A2031A	NM_001148	NP_001139	Q01484	ANK2_HUMAN	ankyrin 2 isoform 1	1983					axon guidance|signal transduction	apical plasma membrane|basolateral plasma membrane|cytoskeleton|cytosol|sarcomere	protein binding|protein binding			central_nervous_system(7)|ovary(3)|large_intestine(2)|breast(1)|skin(1)	14		Ovarian(17;0.0448)|Hepatocellular(203;0.218)		OV - Ovarian serous cystadenocarcinoma(123;4.92e-05)		ACAAATCAGCAAAACAAAAGC	0.443													14	32					0	0	0	0
ANK2	287	broad.mit.edu	37	4	114279247	114279247	+	Missense_Mutation	SNP	C	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr4:114279247C>A	uc003ibe.3	+	38	9573	c.9473C>A	c.(9472-9474)CCG>CAG	p.P3158Q	ANK2_uc003ibd.3_Intron|ANK2_uc003ibf.3_Intron|ANK2_uc011cgc.1_Intron|ANK2_uc003ibg.3_Intron|ANK2_uc003ibh.3_Intron|ANK2_uc011cgd.1_Missense_Mutation_p.P460Q|ANK2_uc011cgb.1_Missense_Mutation_p.P3173Q	NM_001148	NP_001139	Q01484	ANK2_HUMAN	ankyrin 2 isoform 1	3125					axon guidance|signal transduction	apical plasma membrane|basolateral plasma membrane|cytoskeleton|cytosol|sarcomere	protein binding|protein binding			central_nervous_system(7)|ovary(3)|large_intestine(2)|breast(1)|skin(1)	14		Ovarian(17;0.0448)|Hepatocellular(203;0.218)		OV - Ovarian serous cystadenocarcinoma(123;4.92e-05)		GATCCCCTACCGCTGGAGACA	0.458													18	35					3.99206e-14	4.75111e-14	1	0
C4orf31	79625	broad.mit.edu	37	4	121957973	121957973	+	Missense_Mutation	SNP	C	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr4:121957973C>A	uc003idq.1	-	4	1680	c.1153G>T	c.(1153-1155)GTC>TTC	p.V385F		NM_024574	NP_078850	Q8TB73	CD031_HUMAN	hypothetical protein LOC79625 precursor	385											0						TGGATTTGGACAGCATCCAGA	0.408													27	61					7.26314e-15	8.78857e-15	1	0
TRPC3	7222	broad.mit.edu	37	4	122825631	122825631	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr4:122825631C>G	uc003ieg.2	-	8	2173	c.2099G>C	c.(2098-2100)GGG>GCG	p.G700A	TRPC3_uc010inr.2_Missense_Mutation_p.G572A|TRPC3_uc003ief.2_Missense_Mutation_p.G627A|TRPC3_uc011cgl.1_Missense_Mutation_p.G364A	NM_001130698	NP_001124170	Q13507	TRPC3_HUMAN	transient receptor potential cation channel,	615	Helical; (Potential).				axon guidance|phototransduction|platelet activation	integral to plasma membrane	protein binding|store-operated calcium channel activity			ovary(2)	2						TTCAGACAACCCAAATATTGA	0.303													7	23					0	0	0	0
TRPC3	7222	broad.mit.edu	37	4	122828721	122828721	+	Silent	SNP	A	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr4:122828721A>T	uc003ieg.2	-	7	1868	c.1794T>A	c.(1792-1794)GCT>GCA	p.A598A	TRPC3_uc010inr.2_Silent_p.A470A|TRPC3_uc003ief.2_Silent_p.A525A|TRPC3_uc011cgl.1_Silent_p.A262A	NM_001130698	NP_001124170	Q13507	TRPC3_HUMAN	transient receptor potential cation channel,	513	Cytoplasmic (Potential).				axon guidance|phototransduction|platelet activation	integral to plasma membrane	protein binding|store-operated calcium channel activity			ovary(2)	2						ATTTATCTCTAGCTAGAAAAA	0.413													14	27					0	0	0	0
KIAA1109	84162	broad.mit.edu	37	4	123274986	123274986	+	Missense_Mutation	SNP	A	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr4:123274986A>T	uc003ieh.2	+	80	14164	c.14119A>T	c.(14119-14121)ACA>TCA	p.T4707S	KIAA1109_uc003iem.2_Missense_Mutation_p.T1063S	NM_015312	NP_056127	Q2LD37	K1109_HUMAN	fragile site-associated protein	4707					regulation of cell growth|regulation of epithelial cell differentiation	integral to membrane|nucleus				ovary(8)|skin(2)|pancreas(1)|central_nervous_system(1)	12						TGATCATTCTACATATATTGT	0.323													15	34					0	0	0	0
FAT4	79633	broad.mit.edu	37	4	126237812	126237812	+	Silent	SNP	C	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr4:126237812C>T	uc003ifj.3	+	1	246	c.246C>T	c.(244-246)GCC>GCT	p.A82A		NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	82	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						CCCTGTTTGCCATAAACAGTA	0.622											OREG0016317	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	21	57					0	0	0	0
USP38	84640	broad.mit.edu	37	4	144119035	144119035	+	Missense_Mutation	SNP	C	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr4:144119035C>A	uc003ijb.2	+	4	1542	c.1008C>A	c.(1006-1008)CAC>CAA	p.H336Q	USP38_uc003ija.3_Missense_Mutation_p.H336Q|USP38_uc003ijc.2_RNA	NM_032557	NP_115946	Q8NB14	UBP38_HUMAN	ubiquitin specific peptidase 38	336					ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|ubiquitin thiolesterase activity			lung(2)|ovary(1)|breast(1)|pancreas(1)	5	all_hematologic(180;0.158)					TTCTTTCTCACATGCTGCTTA	0.373													21	58					4.87955e-14	5.79376e-14	1	0
LRBA	987	broad.mit.edu	37	4	151392833	151392833	+	Missense_Mutation	SNP	A	G	G			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr4:151392833A>G	uc010ipj.2	-	44	7117	c.6643T>C	c.(6643-6645)TGG>CGG	p.W2215R	LRBA_uc003ils.3_Missense_Mutation_p.W105R|LRBA_uc003ilt.3_Missense_Mutation_p.W863R|LRBA_uc003ilu.3_Missense_Mutation_p.W2204R	NM_006726	NP_006717	P50851	LRBA_HUMAN	LPS-responsive vesicle trafficking, beach and	2215	BEACH.					endoplasmic reticulum|Golgi apparatus|integral to membrane|lysosome|plasma membrane	protein binding	p.W2215R(1)		ovary(3)|breast(3)|skin(1)	7	all_hematologic(180;0.151)					CTGTGTTGCCATCGCTGGGTC	0.323													36	78					0	0	0	0
LRBA	987	broad.mit.edu	37	4	151682970	151682970	+	Silent	SNP	T	G	G			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr4:151682970T>G	uc010ipj.2	-	35	6084	c.5610A>C	c.(5608-5610)GCA>GCC	p.A1870A	LRBA_uc003ilt.3_Silent_p.A529A|LRBA_uc003ilu.3_Silent_p.A1870A	NM_006726	NP_006717	P50851	LRBA_HUMAN	LPS-responsive vesicle trafficking, beach and	1870						endoplasmic reticulum|Golgi apparatus|integral to membrane|lysosome|plasma membrane	protein binding			ovary(3)|breast(3)|skin(1)	7	all_hematologic(180;0.151)					AAGCAAGGCCTGCATTCTTCT	0.264													28	41					0	0	0	0
RXFP1	59350	broad.mit.edu	37	4	159572918	159572918	+	Missense_Mutation	SNP	C	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr4:159572918C>A	uc003ipz.2	+	18	2067	c.1985C>A	c.(1984-1986)ACC>AAC	p.T662N	RXFP1_uc011cja.1_Missense_Mutation_p.T557N|RXFP1_uc010iqo.2_Missense_Mutation_p.T614N|RXFP1_uc011cjb.1_Missense_Mutation_p.T560N|RXFP1_uc010iqk.2_Missense_Mutation_p.T530N|RXFP1_uc011cjc.1_Missense_Mutation_p.T581N|RXFP1_uc011cjd.1_Missense_Mutation_p.T581N|RXFP1_uc010iql.2_Missense_Mutation_p.T506N|RXFP1_uc011cje.1_Missense_Mutation_p.T689N|RXFP1_uc010iqm.2_Missense_Mutation_p.T629N|RXFP1_uc011cjf.1_Missense_Mutation_p.T531N|RXFP1_uc010iqn.2_Missense_Mutation_p.T607N	NM_021634	NP_067647	Q9HBX9	RXFP1_HUMAN	relaxin/insulin-like family peptide receptor 1	662	Helical; Name=7; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity|metal ion binding				0	all_hematologic(180;0.24)	Renal(120;0.0854)		COAD - Colon adenocarcinoma(41;0.0219)		GGTACCATAACCTCTTGGGTA	0.343													9	32					2.74318e-10	3.10445e-10	1	0
NPY1R	4886	broad.mit.edu	37	4	164247135	164247135	+	Missense_Mutation	SNP	G	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr4:164247135G>T	uc003iqm.1	-	2	838	c.572C>A	c.(571-573)GCG>GAG	p.A191E	NPY1R_uc011cjj.1_Intron	NM_000909	NP_000900	P25929	NPY1R_HUMAN	neuropeptide Y receptor Y1	191	Extracellular (Potential).				inhibition of adenylate cyclase activity by G-protein signaling pathway|outflow tract morphogenesis	integral to plasma membrane	protein binding			lung(1)|pancreas(1)	2	all_hematologic(180;0.166)	Prostate(90;0.0959)|all_neural(102;0.223)				GTCTTTGTACGCATCAAGTGT	0.433													13	54					4.36969e-10	4.9014e-10	1	0
TLL1	7092	broad.mit.edu	37	4	166986968	166986968	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr4:166986968C>T	uc003irh.1	+	16	2788	c.2141C>T	c.(2140-2142)TCT>TTT	p.S714F	TLL1_uc011cjn.1_Missense_Mutation_p.S737F|TLL1_uc011cjo.1_Missense_Mutation_p.S538F	NM_012464	NP_036596	O43897	TLL1_HUMAN	tolloid-like 1 precursor	714	CUB 3.				cell differentiation|proteolysis|skeletal system development	extracellular region	calcium ion binding|metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7	all_hematologic(180;0.221)	Melanoma(52;0.0315)|Prostate(90;0.0405)		GBM - Glioblastoma multiforme(119;0.103)		GAATTCAAATCTGACAATACT	0.388													43	85					0	0	0	0
GLRA3	8001	broad.mit.edu	37	4	175649783	175649783	+	Missense_Mutation	SNP	G	C	C			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr4:175649783G>C	uc003ity.1	-	4	837	c.334C>G	c.(334-336)CCT>GCT	p.P112A	GLRA3_uc003itz.1_Missense_Mutation_p.P112A	NM_006529	NP_006520	O75311	GLRA3_HUMAN	glycine receptor, alpha 3 isoform a	112	Extracellular (Probable).				synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	extracellular-glycine-gated chloride channel activity|glycine binding|receptor activity|transmitter-gated ion channel activity			ovary(3)	3		Prostate(90;0.00601)|Breast(14;0.0091)|Melanoma(52;0.00959)|Renal(120;0.0183)|all_neural(102;0.0891)|all_hematologic(60;0.107)		all cancers(43;4.99e-18)|Epithelial(43;1.18e-16)|OV - Ovarian serous cystadenocarcinoma(60;5.88e-09)|STAD - Stomach adenocarcinoma(60;0.00442)|GBM - Glioblastoma multiforme(59;0.0102)|LUSC - Lung squamous cell carcinoma(193;0.0421)	Glycine(DB00145)	GAGTCGTCAGGATATTCACTG	0.398													26	51					0	0	0	0
ADAM29	11086	broad.mit.edu	37	4	175898234	175898234	+	Missense_Mutation	SNP	T	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr4:175898234T>A	uc003iuc.2	+	5	2228	c.1558T>A	c.(1558-1560)TGC>AGC	p.C520S	ADAM29_uc003iud.2_Missense_Mutation_p.C520S|ADAM29_uc010irr.2_Missense_Mutation_p.C520S|ADAM29_uc011cki.1_Missense_Mutation_p.C520S	NM_014269	NP_055084	Q9UKF5	ADA29_HUMAN	ADAM metallopeptidase domain 29 preproprotein	520	Cys-rich.|Extracellular (Potential).				proteolysis|spermatogenesis	integral to plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(5)|central_nervous_system(3)|ovary(3)|large_intestine(2)|lung(2)|pancreas(1)	16		Breast(14;0.00908)|Melanoma(52;0.00951)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;3.08e-19)|Epithelial(43;6.24e-18)|OV - Ovarian serous cystadenocarcinoma(60;1.78e-09)|STAD - Stomach adenocarcinoma(60;0.00303)|GBM - Glioblastoma multiforme(59;0.0106)|LUSC - Lung squamous cell carcinoma(193;0.0286)		AAGTGAGACTTGCTACAAAGA	0.433													21	53					0	0	0	0
WDR17	116966	broad.mit.edu	37	4	177072972	177072972	+	Missense_Mutation	SNP	C	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr4:177072972C>A	uc003iuj.2	+	18	2542	c.2386C>A	c.(2386-2388)CAA>AAA	p.Q796K	WDR17_uc003iuk.2_Missense_Mutation_p.Q772K|WDR17_uc003ium.3_Missense_Mutation_p.Q772K|WDR17_uc003iul.1_Intron|WDR17_uc003iun.2_Missense_Mutation_p.Q15K	NM_170710	NP_733828	Q8IZU2	WDR17_HUMAN	WD repeat domain 17 isoform 1	796										ovary(2)|skin(2)|pancreas(1)|central_nervous_system(1)	6		Breast(14;0.00015)|Melanoma(52;0.00886)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;2.21e-20)|Epithelial(43;9.71e-18)|OV - Ovarian serous cystadenocarcinoma(60;2.38e-09)|GBM - Glioblastoma multiforme(59;0.000295)|STAD - Stomach adenocarcinoma(60;0.000703)|LUSC - Lung squamous cell carcinoma(193;0.0232)		GTCTGAAGCTCAAGAACTAAC	0.284													16	36					1.33834e-09	1.49129e-09	1	0
CDKN2AIP	55602	broad.mit.edu	37	4	184366134	184366134	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr4:184366134G>A	uc003ivp.1	+	1	346	c.184G>A	c.(184-186)GAC>AAC	p.D62N	CDKN2AIP_uc003ivq.1_5'UTR	NM_017632	NP_060102	Q9NXV6	CARF_HUMAN	CDKN2A interacting protein	62					negative regulation of cell growth|positive regulation of signal transduction|regulation of protein stability	granular component|nucleoplasm	double-stranded RNA binding|p53 binding				0		all_lung(41;6.9e-12)|Lung NSC(41;1.28e-11)|Colorectal(36;0.00435)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_hematologic(60;0.0749)		all cancers(43;1.15e-26)|Epithelial(43;2.98e-22)|OV - Ovarian serous cystadenocarcinoma(60;7.64e-10)|GBM - Glioblastoma multiforme(59;4.22e-06)|Colorectal(24;5.87e-06)|STAD - Stomach adenocarcinoma(60;2.09e-05)|COAD - Colon adenocarcinoma(29;5.15e-05)|LUSC - Lung squamous cell carcinoma(40;0.00902)|READ - Rectum adenocarcinoma(43;0.155)		TGAAGCTGCCGACGCCGAGAG	0.667													23	39					0	0	0	0
IRX4	50805	broad.mit.edu	37	5	1880913	1880913	+	Silent	SNP	C	G	G			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr5:1880913C>G	uc003jcz.2	-	3	452	c.333G>C	c.(331-333)GCG>GCC	p.A111A	IRX4_uc011cmf.1_5'UTR	NM_016358	NP_057442	P78413	IRX4_HUMAN	iroquois homeobox 4	111					heart development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0				GBM - Glioblastoma multiforme(108;0.242)		GGCCCCCATGCGCAGATCCCG	0.622													32	91					0	0	0	0
IRX1	79192	broad.mit.edu	37	5	3599605	3599605	+	Silent	SNP	G	C	C			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr5:3599605G>C	uc003jde.2	+	2	595	c.543G>C	c.(541-543)GCG>GCC	p.A181A		NM_024337	NP_077313	P78414	IRX1_HUMAN	iroquois homeobox protein 1	181	Homeobox; TALE-type.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|pancreas(1)	2						TCGCCAACGCGCGCCGGCGCC	0.632													24	79					0	0	0	0
KIAA0947	23379	broad.mit.edu	37	5	5465077	5465077	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr5:5465077C>T	uc003jdm.3	+	13	5852	c.5630C>T	c.(5629-5631)CCA>CTA	p.P1877L		NM_015325	NP_056140	Q9Y2F5	K0947_HUMAN	hypothetical protein LOC23379	1877										ovary(1)|central_nervous_system(1)	2						AACCTCCCTCCAGCTGAAGTT	0.507													7	20					0	0	0	0
CDH12	1010	broad.mit.edu	37	5	21783484	21783484	+	Missense_Mutation	SNP	A	G	G			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr5:21783484A>G	uc010iuc.2	-	8	1834	c.1376T>C	c.(1375-1377)ATA>ACA	p.I459T	CDH12_uc011cno.1_Missense_Mutation_p.I419T|CDH12_uc003jgk.2_Missense_Mutation_p.I459T	NM_004061	NP_004052	P55289	CAD12_HUMAN	cadherin 12, type 2 preproprotein	459	Extracellular (Potential).|Cadherin 4.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)	2						ACTCGCAATTATGGAGAAATT	0.383										HNSCC(59;0.17)			35	69					0	0	0	0
C5orf22	55322	broad.mit.edu	37	5	31552888	31552888	+	Missense_Mutation	SNP	T	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr5:31552888T>A	uc003jhj.3	+	9	1335	c.1208T>A	c.(1207-1209)CTG>CAG	p.L403Q	C5orf22_uc003jhk.3_Missense_Mutation_p.L138Q|C5orf22_uc010iuj.2_Missense_Mutation_p.L138Q	NM_018356	NP_060826	Q49AR2	CE022_HUMAN	hypothetical protein LOC55322	403										ovary(2)	2						AGGTCAAGTCTGGATGATTAC	0.383													23	39					0	0	0	0
C1QTNF3	114899	broad.mit.edu	37	5	34035786	34035786	+	Silent	SNP	G	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr5:34035786G>T	uc003jin.2	-	2	249	c.162C>A	c.(160-162)GGC>GGA	p.G54G	C1QTNF3_uc003jio.2_Silent_p.G127G	NM_030945	NP_112207	Q9BXJ4	C1QT3_HUMAN	C1q and tumor necrosis factor related protein 3	54	Collagen-like.					collagen					0	all_lung(31;0.0207)					GCCCAGGGGGGCCTTGGTAGC	0.522													10	36					2.27111e-07	2.45512e-07	1	0
EGFLAM	133584	broad.mit.edu	37	5	38448428	38448428	+	Silent	SNP	G	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr5:38448428G>A	uc003jlc.1	+	19	2838	c.2514G>A	c.(2512-2514)CCG>CCA	p.P838P	EGFLAM_uc003jlb.1_Silent_p.P830P|EGFLAM_uc003jle.1_Silent_p.P596P|EGFLAM_uc003jlf.1_Silent_p.P196P|EGFLAM_uc003jlg.1_5'UTR	NM_152403	NP_689616	Q63HQ2	EGFLA_HUMAN	EGF-like, fibronectin type III and laminin G	838	Laminin G-like 3.					cell junction|proteinaceous extracellular matrix|synapse				pancreas(3)|skin(3)|ovary(1)	7	all_lung(31;0.000385)					TTGAGATCCCGCAGTTTATCG	0.473													48	134					0	0	0	0
OXCT1	5019	broad.mit.edu	37	5	41853618	41853618	+	Missense_Mutation	SNP	T	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr5:41853618T>A	uc003jmn.2	-	4	648	c.317A>T	c.(316-318)AAG>ATG	p.K106M		NM_000436	NP_000427	P55809	SCOT1_HUMAN	3-oxoacid CoA transferase 1 precursor	106					cellular lipid metabolic process|ketone body catabolic process	mitochondrial matrix	3-oxoacid CoA-transferase activity|protein homodimerization activity			ovary(2)|large_intestine(1)	3					Succinic acid(DB00139)	TTTTATCTGCTTGGACCGAAG	0.418													13	41					0	0	0	0
IL31RA	133396	broad.mit.edu	37	5	55192206	55192206	+	Silent	SNP	C	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr5:55192206C>T	uc003jql.2	+	7	866	c.801C>T	c.(799-801)GTC>GTT	p.V267V	IL31RA_uc003jqk.2_Silent_p.V267V|IL31RA_uc011cqj.1_Silent_p.V125V|IL31RA_uc003jqm.2_Silent_p.V235V|IL31RA_uc003jqn.2_Silent_p.V267V|IL31RA_uc010iwa.1_Silent_p.V235V|IL31RA_uc003jqo.2_Silent_p.V125V	NM_139017	NP_620586	Q8NI17	IL31R_HUMAN	gp130-like monocyte receptor	235	Extracellular (Potential).|Fibronectin type-III 3.				anti-apoptosis|defense response|homeostatic process|JAK-STAT cascade|macrophage differentiation|MAPKKK cascade|monocyte differentiation|negative regulation of macrophage activation|positive regulation of cell proliferation|positive regulation of transcription, DNA-dependent|positive regulation of tyrosine phosphorylation of Stat3 protein|positive regulation of tyrosine phosphorylation of Stat5 protein|transmembrane receptor protein tyrosine kinase signaling pathway	integral to membrane|plasma membrane	cytokine receptor activity|protein kinase binding|transcription coactivator activity			ovary(1)	1		Lung NSC(810;6.93e-05)|Prostate(74;0.00741)|Breast(144;0.0544)|Ovarian(174;0.223)				TGTGGAGAGTCCTGAAACCAG	0.443													41	62					0	0	0	0
GAPT	202309	broad.mit.edu	37	5	57790833	57790833	+	Missense_Mutation	SNP	A	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr5:57790833A>T	uc003jro.1	+	3	864	c.470A>T	c.(469-471)TAT>TTT	p.Y157F		NM_152687	NP_689900	Q8N292	GAPT_HUMAN	GRB2-binding adaptor protein, transmembrane	157					B cell activation	integral to membrane|plasma membrane					0						CCAGATTCATATTAGCTTTTC	0.224													8	19					0	0	0	0
FAM169A	26049	broad.mit.edu	37	5	74109689	74109689	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr5:74109689G>A	uc003kdm.2	-	6	689	c.646C>T	c.(646-648)CCA>TCA	p.P216S	FAM169A_uc010izm.2_Intron|FAM169A_uc003kdl.2_Missense_Mutation_p.P34S	NM_015566	NP_056381	Q9Y6X4	F169A_HUMAN	hypothetical protein LOC26049	216											0						GAAGACAGTGGATACCGCAAG	0.363													36	50					0	0	0	0
CMYA5	202333	broad.mit.edu	37	5	79028981	79028981	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr5:79028981G>A	uc003kgc.2	+	2	4465	c.4393G>A	c.(4393-4395)GCC>ACC	p.A1465T		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	1465						perinuclear region of cytoplasm				ovary(6)|pancreas(2)|lung(1)	9		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		AGAAGTAGAAGCCAAAGAAGT	0.378													21	37					0	0	0	0
DHFR	1719	broad.mit.edu	37	5	79924954	79924954	+	Missense_Mutation	SNP	C	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr5:79924954C>A	uc003kgy.1	-	6	1008	c.516G>T	c.(514-516)GAG>GAT	p.E172D	DHFR_uc011ctl.1_3'UTR|DHFR_uc011ctm.1_Missense_Mutation_p.E120D|DHFR_uc010jap.1_RNA|DHFR_uc003kgx.1_Missense_Mutation_p.E321D	NM_000791	NP_000782	P00374	DYR_HUMAN	dihydrofolate reductase	172	DHFR.				folic acid metabolic process|glycine biosynthetic process|nucleotide biosynthetic process|one-carbon metabolic process|regulation of transcription involved in G1/S phase of mitotic cell cycle|response to methotrexate|tetrahydrofolate metabolic process	cytosol	dihydrofolate reductase activity|drug binding|folate reductase activity|NADP binding				0		Lung NSC(167;0.00475)|all_lung(232;0.00502)|Ovarian(174;0.0261)		OV - Ovarian serous cystadenocarcinoma(54;2.69e-46)|Epithelial(54;7.49e-41)|all cancers(79;1.54e-35)	Dapsone(DB00250)|Dimethyl sulfoxide(DB01093)|Lamotrigine(DB00555)|Methotrexate(DB00563)|NADH(DB00157)|Pemetrexed(DB00642)|Proguanil(DB01131)|Pyrimethamine(DB00205)|Trimethoprim(DB00440)|Trimetrexate(DB01157)	TGCCTTTCTCCTCCTGGACAT	0.328													9	20					5.50884e-06	5.80661e-06	1	0
GPR98	84059	broad.mit.edu	37	5	89923209	89923209	+	Missense_Mutation	SNP	G	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr5:89923209G>T	uc003kju.2	+	7	950	c.854G>T	c.(853-855)CGT>CTT	p.R285L	GPR98_uc003kjt.2_5'UTR	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	285	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		CCAGTAGTTCGTGGAAAGGAC	0.393													50	119					8.24881e-48	1.15849e-47	1	0
PCSK1	5122	broad.mit.edu	37	5	95743993	95743993	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr5:95743993G>A	uc003kls.1	-	9	1336	c.1130C>T	c.(1129-1131)ACG>ATG	p.T377M	PCSK1_uc010jbi.1_Missense_Mutation_p.T67M	NM_000439	NP_000430	P29120	NEC1_HUMAN	proprotein convertase subtilisin/kexin type 1	377	Catalytic.				cell-cell signaling|cellular nitrogen compound metabolic process|energy reserve metabolic process|hormone biosynthetic process|peptide biosynthetic process|peptide hormone processing|regulation of insulin secretion	extracellular space|stored secretory granule|transport vesicle	serine-type endopeptidase activity			ovary(2)	2		all_cancers(142;2.67e-06)|all_epithelial(76;6.92e-09)|all_lung(232;0.00307)|Lung NSC(167;0.00452)|Ovarian(225;0.0112)|Colorectal(57;0.0341)|Breast(839;0.244)		all cancers(79;3.44e-16)	Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	GCCTGTGTGCGTCTCCGTGCA	0.577													18	31					0	0	0	0
ST8SIA4	7903	broad.mit.edu	37	5	100147576	100147576	+	Missense_Mutation	SNP	G	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr5:100147576G>T	uc003knk.2	-	5	1383	c.1055C>A	c.(1054-1056)ACA>AAA	p.T352K		NM_005668	NP_005659	Q92187	SIA8D_HUMAN	ST8 alpha-N-acetyl-neuraminide	352	Lumenal (Potential).				axon guidance|N-glycan processing	integral to Golgi membrane	alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity			large_intestine(1)|central_nervous_system(1)	2		all_cancers(142;1.5e-07)|all_epithelial(76;1.43e-10)|Prostate(80;0.000644)|Lung NSC(167;0.0059)|all_lung(232;0.00914)|Ovarian(225;0.024)|Colorectal(57;0.09)|Breast(839;0.203)		COAD - Colon adenocarcinoma(37;0.00402)		CTTTCCTGTTGTCAGTTTTAG	0.338													13	34					9.31168e-06	9.77437e-06	1	0
SLCO6A1	133482	broad.mit.edu	37	5	101834371	101834371	+	Missense_Mutation	SNP	T	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr5:101834371T>A	uc003knn.2	-	1	350	c.178A>T	c.(178-180)AGG>TGG	p.R60W	SLCO6A1_uc003kno.2_Missense_Mutation_p.R60W|SLCO6A1_uc003knp.2_Missense_Mutation_p.R60W|SLCO6A1_uc003knq.2_Missense_Mutation_p.R60W	NM_173488	NP_775759	Q86UG4	SO6A1_HUMAN	solute carrier organic anion transporter family,	60	Cytoplasmic (Potential).					integral to membrane|plasma membrane	transporter activity	p.R60S(1)		ovary(3)|skin(3)|central_nervous_system(1)	7		all_cancers(142;8e-09)|all_epithelial(76;2.83e-12)|Prostate(80;0.00125)|Colorectal(57;0.00342)|Ovarian(225;0.024)|Lung NSC(167;0.0259)|all_lung(232;0.0323)		Epithelial(69;1.47e-15)|COAD - Colon adenocarcinoma(37;0.0113)		CCGCCGAACCTTATCAAGGCC	0.552													74	183					0	0	0	0
FAM170A	340069	broad.mit.edu	37	5	118970235	118970235	+	Missense_Mutation	SNP	G	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr5:118970235G>T	uc003ksm.2	+	3	1002	c.792G>T	c.(790-792)ATG>ATT	p.M264I	FAM170A_uc003ksl.2_Intron|FAM170A_uc003ksn.2_Missense_Mutation_p.M264I|FAM170A_uc003kso.2_Missense_Mutation_p.M217I	NM_182761	NP_877438	A1A519	F170A_HUMAN	family with sequence similarity 170, member A	264						intracellular	zinc ion binding			skin(1)	1						ATCTCACCATGGCTCAGCTGA	0.398													78	156					8.16569e-41	1.13115e-40	1	0
FTMT	94033	broad.mit.edu	37	5	121187935	121187935	+	Missense_Mutation	SNP	G	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr5:121187935G>T	uc003kss.2	+	1	286	c.277G>T	c.(277-279)GTG>TTG	p.V93L		NM_177478	NP_803431	Q8N4E7	FTMT_HUMAN	ferritin mitochondrial precursor	93	Ferritin-like diiron.				cellular iron ion homeostasis|iron ion transport|positive regulation of cell proliferation|positive regulation of lyase activity|positive regulation of oxidoreductase activity|positive regulation of transferase activity	mitochondrion	ferric iron binding|ferroxidase activity			ovary(1)	1		all_cancers(142;0.0124)|Prostate(80;0.0322)	KIRC - Kidney renal clear cell carcinoma(527;0.206)	Epithelial(69;0.000171)|OV - Ovarian serous cystadenocarcinoma(64;0.000188)|all cancers(49;0.0027)		TGCGTCCTACGTGTACTTGTC	0.622													21	49					1.10513e-12	1.28216e-12	1	0
ACSL6	23305	broad.mit.edu	37	5	131302194	131302194	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr5:131302194C>T	uc010jdo.1	-	17	1636	c.1553G>A	c.(1552-1554)GGC>GAC	p.G518D	ACSL6_uc003kvv.1_RNA|ACSL6_uc003kvx.1_Missense_Mutation_p.G543D|ACSL6_uc003kvy.1_Missense_Mutation_p.G543D|ACSL6_uc003kwb.2_Missense_Mutation_p.G508D|ACSL6_uc003kvz.1_Missense_Mutation_p.G443D|ACSL6_uc003kwa.1_Missense_Mutation_p.G529D|ACSL6_uc003kvw.1_Missense_Mutation_p.G164D|ACSL6_uc010jdn.1_Missense_Mutation_p.G533D	NM_015256	NP_056071	Q9UKU0	ACSL6_HUMAN	acyl-CoA synthetase long-chain family member 6	518	Cytoplasmic (Potential).				fatty acid metabolic process|long-chain fatty-acyl-CoA biosynthetic process|triglyceride biosynthetic process	endoplasmic reticulum membrane|integral to membrane|microsome|mitochondrial outer membrane|peroxisomal membrane|plasma membrane	ATP binding|long-chain fatty acid-CoA ligase activity			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3		all_cancers(142;0.107)|Breast(839;0.198)|Lung NSC(810;0.216)|all_lung(232;0.248)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			TTTCAAGTAGCCTTTGAACAC	0.502													36	92					0	0	0	0
SEC24A	10802	broad.mit.edu	37	5	134032863	134032863	+	Missense_Mutation	SNP	G	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr5:134032863G>T	uc003kzs.2	+	14	2322	c.2034G>T	c.(2032-2034)TTG>TTT	p.L678F	SEC24A_uc011cxu.1_Missense_Mutation_p.L442F	NM_021982	NP_068817	O95486	SC24A_HUMAN	SEC24 related gene family, member A	678					COPII vesicle coating|intracellular protein transport|post-translational protein modification|protein N-linked glycosylation via asparagine	COPII vesicle coat|cytosol|endoplasmic reticulum membrane|Golgi membrane|perinuclear region of cytoplasm	zinc ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			AATTAGCCTTGGACTGTTCTG	0.323													56	83					4.10029e-35	5.6185e-35	1	0
KDM3B	51780	broad.mit.edu	37	5	137727661	137727661	+	Silent	SNP	G	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr5:137727661G>A	uc003lcy.1	+	8	2540	c.2340G>A	c.(2338-2340)CCG>CCA	p.P780P	KDM3B_uc010jew.1_Silent_p.P436P|KDM3B_uc011cys.1_Intron	NM_016604	NP_057688	Q7LBC6	KDM3B_HUMAN	jumonji domain containing 1B	780					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			ovary(3)|upper_aerodigestive_tract(2)|lung(2)|kidney(2)|central_nervous_system(1)|skin(1)	11						TGTCCTCCCCGGCAGATTTTT	0.532													157	306					0	0	0	0
ANKHD1-EIF4EBP3	404734	broad.mit.edu	37	5	139909127	139909127	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr5:139909127C>G	uc003lfs.1	+	29	6720	c.6596C>G	c.(6595-6597)TCT>TGT	p.S2199C	ANKHD1_uc003lfr.2_Missense_Mutation_p.S2199C|ANKHD1-EIF4EBP3_uc011czh.1_Missense_Mutation_p.S938C|ANKHD1_uc003lfw.2_Missense_Mutation_p.S837C|ANKHD1_uc010jfl.2_Missense_Mutation_p.S634C|ANKHD1-EIF4EBP3_uc003lfx.1_Missense_Mutation_p.S336C	NM_020690	NP_065741	Q8IWZ2	Q8IWZ2_HUMAN	ANKHD1-EIF4EBP3 protein	2199						cytoplasm|nucleus	RNA binding			ovary(6)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCAAATAAGTCTTTGCCACCT	0.478													58	83					0	0	0	0
ZMAT2	153527	broad.mit.edu	37	5	140080472	140080472	+	Silent	SNP	C	G	G			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr5:140080472C>G	uc003lgy.1	+	2	101	c.87C>G	c.(85-87)CTC>CTG	p.L29L		NM_144723	NP_653324	Q96NC0	ZMAT2_HUMAN	zinc finger, matrin type 2	29						nucleus	DNA binding|zinc ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGAAGAGGCTCACGGAAGAGA	0.498													10	23					0	0	0	0
PCDHA8	56140	broad.mit.edu	37	5	140222189	140222189	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr5:140222189G>A	uc003lhs.2	+	1	1283	c.1283G>A	c.(1282-1284)CGG>CAG	p.R428Q	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhr.1_Missense_Mutation_p.R428Q	NM_018911	NP_061734	Q9Y5H6	PCDA8_HUMAN	protocadherin alpha 8 isoform 1 precursor	428	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			upper_aerodigestive_tract(1)|ovary(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GTAACCGCGCGGGACGGGGGC	0.632													100	135					0	0	0	0
PCDHB17	54661	broad.mit.edu	37	5	140537262	140537262	+	Silent	SNP	G	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr5:140537262G>T	uc003lis.2	+	1	1683	c.1683G>T	c.(1681-1683)TCG>TCT	p.S561S		NR_001280				SubName: Full=Protocadherin-psi1;												0						CTCGCCCTTCGTGCTGTACCC	0.711													31	53					2.51541e-25	3.30392e-25	1	0
PCDHB16	57717	broad.mit.edu	37	5	140563029	140563029	+	Missense_Mutation	SNP	G	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr5:140563029G>T	uc003liv.2	+	1	2050	c.895G>T	c.(895-897)GGG>TGG	p.G299W	PCDHB16_uc010jfw.1_Intron	NM_020957	NP_066008	Q9NRJ7	PCDBG_HUMAN	protocadherin beta 16 precursor	299	Extracellular (Potential).|Cadherin 3.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TCCTATGACAGGGGAAGTTCG	0.453													33	56					7.83172e-31	1.04767e-30	1	0
PCDHGB1	56104	broad.mit.edu	37	5	140730296	140730296	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr5:140730296G>A	uc003ljo.1	+	1	469	c.469G>A	c.(469-471)GCA>ACA	p.A157T	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc011daq.1_Missense_Mutation_p.A157T	NM_018922	NP_061745	Q9Y5G3	PCDGD_HUMAN	protocadherin gamma subfamily B, 1 isoform 1	157	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGCTCAAGATGCAGATGTGGA	0.423													105	181					0	0	0	0
PCDHGB1	56104	broad.mit.edu	37	5	140731764	140731764	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr5:140731764G>A	uc003ljo.1	+	1	1937	c.1937G>A	c.(1936-1938)GGA>GAA	p.G646E	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc011daq.1_Missense_Mutation_p.G646E	NM_018922	NP_061745	Q9Y5G3	PCDGD_HUMAN	protocadherin gamma subfamily B, 1 isoform 1	646	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CGTGATGGAGGACAGCCGCCA	0.682													29	44					0	0	0	0
PCDHGA6	56109	broad.mit.edu	37	5	140754340	140754340	+	Silent	SNP	A	G	G			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr5:140754340A>G	uc003ljy.1	+	1	690	c.690A>G	c.(688-690)GTA>GTG	p.V230V	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc011dau.1_Silent_p.V230V	NM_018919	NP_061742	Q9Y5G7	PCDG6_HUMAN	protocadherin gamma subfamily A, 6 isoform 1	230	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AAATTCTGGTAACAGTTCTAG	0.542													9	26					0	0	0	0
PCDHGB6	56100	broad.mit.edu	37	5	140789910	140789910	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr5:140789910G>A	uc003lkj.1	+	1	2141	c.2141G>A	c.(2140-2142)CGC>CAC	p.R714H	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lki.1_Missense_Mutation_p.R714H|PCDHGA10_uc011day.1_5'Flank|PCDHGA10_uc003lkl.1_5'Flank	NM_018926	NP_061749	Q9Y5F9	PCDGI_HUMAN	protocadherin gamma subfamily B, 6 isoform 1	714	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ATTGCCTTGCGCCTGCGACGC	0.577													64	101					0	0	0	0
RBM27	54439	broad.mit.edu	37	5	145610481	145610481	+	Splice_Site	SNP	G	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr5:145610481G>A	uc003lnz.3	+	6	1016	c.850_splice	c.e6+1	p.E284_splice	RBM27_uc003lny.2_Splice_Site_p.E284_splice	NM_018989	NP_061862	Q9P2N5	RBM27_HUMAN	RNA binding motif protein 27						mRNA processing	cytoplasm|nuclear speck	nucleotide binding|RNA binding|zinc ion binding			central_nervous_system(2)|pancreas(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			GATTATGATGGTAAAAATCAC	0.348													47	33					0	0	0	0
ANXA6	309	broad.mit.edu	37	5	150503912	150503912	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr5:150503912C>T	uc003ltl.1	-	15	1225	c.1073G>A	c.(1072-1074)CGC>CAC	p.R358H	ANXA6_uc011dcp.1_Missense_Mutation_p.R326H|ANXA6_uc003ltm.1_Missense_Mutation_p.R358H|ANXA6_uc003ltn.1_Missense_Mutation_p.R151H|ANXA6_uc003lto.1_Intron	NM_001155	NP_001146	P08133	ANXA6_HUMAN	annexin VI isoform 1	358						melanosome	calcium ion binding|calcium-dependent phospholipid binding|protein binding				0		Medulloblastoma(196;0.0912)|all_hematologic(541;0.208)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			ATTGGCTGGGCGCACAGTTCC	0.597													8	5					0	0	0	0
CYFIP2	26999	broad.mit.edu	37	5	156723752	156723752	+	Silent	SNP	C	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr5:156723752C>A	uc003lwq.2	+	7	495	c.357C>A	c.(355-357)GTC>GTA	p.V119V	CYFIP2_uc011ddn.1_Silent_p.V93V|CYFIP2_uc011ddo.1_Intron|CYFIP2_uc003lwr.2_Silent_p.V119V|CYFIP2_uc003lws.2_Silent_p.V119V|CYFIP2_uc003lwt.2_5'UTR|CYFIP2_uc011ddp.1_5'UTR|CYFIP2_uc003lwp.2_5'UTR	NM_001037333	NP_001032410	Q96F07	CYFP2_HUMAN	cytoplasmic FMR1 interacting protein 2	119					apoptosis|cell-cell adhesion	cell junction|perinuclear region of cytoplasm|synapse|synaptosome	protein binding				0	Renal(175;0.00212)	Medulloblastoma(196;0.0306)|all_neural(177;0.0897)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			AGCCGGAGGTCACCAAGCTCA	0.517													59	47					1.84395e-34	2.5199e-34	1	0
IL12B	3593	broad.mit.edu	37	5	158749420	158749420	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr5:158749420C>T	uc003lxr.1	-	4	506	c.464G>A	c.(463-465)AGT>AAT	p.S155N		NM_002187	NP_002178	P29460	IL12B_HUMAN	interleukin 12B precursor	155					cell cycle arrest|cell migration|defense response to Gram-negative bacterium|interferon-gamma biosynthetic process|natural killer cell activation|negative regulation of interleukin-10 production|negative regulation of interleukin-17 production|negative regulation of smooth muscle cell proliferation|positive regulation of activated T cell proliferation|positive regulation of activation of JAK2 kinase activity|positive regulation of cell adhesion|positive regulation of defense response to virus by host|positive regulation of granulocyte macrophage colony-stimulating factor production|positive regulation of interferon-gamma biosynthetic process|positive regulation of interferon-gamma production|positive regulation of interleukin-10 production|positive regulation of interleukin-12 production|positive regulation of interleukin-17 production|positive regulation of memory T cell differentiation|positive regulation of natural killer cell mediated cytotoxicity directed against tumor cell target|positive regulation of natural killer cell proliferation|positive regulation of NF-kappaB import into nucleus|positive regulation of NK T cell activation|positive regulation of NK T cell proliferation|positive regulation of osteoclast differentiation|positive regulation of smooth muscle cell apoptosis|positive regulation of T cell mediated cytotoxicity|positive regulation of T-helper 1 type immune response|positive regulation of T-helper 17 cell lineage commitment|positive regulation of T-helper 17 type immune response|positive regulation of tumor necrosis factor production|positive regulation of tyrosine phosphorylation of Stat3 protein|positive regulation of tyrosine phosphorylation of Stat4 protein|positive regulation of tyrosine phosphorylation of Stat5 protein|regulation of tyrosine phosphorylation of Stat1 protein|response to UV-B|sexual reproduction|T-helper 1 type immune response|T-helper cell differentiation	interleukin-12 complex|interleukin-23 complex|membrane	cytokine activity|cytokine receptor activity|interleukin-12 receptor binding|protein heterodimerization activity				0	Renal(175;0.00196)	Medulloblastoma(196;0.0354)|all_neural(177;0.138)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			GCTTTTGACACTGAATGTCAA	0.418													31	22					0	0	0	0
C1QTNF2	114898	broad.mit.edu	37	5	159781811	159781811	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr5:159781811C>A	uc003lyd.2	-	2	347	c.343G>T	c.(343-345)GGA>TGA	p.G115*		NM_031908	NP_114114	Q9BXJ5	C1QT2_HUMAN	C1q and tumor necrosis factor related protein 2	70	Collagen-like.					collagen				skin(1)	1	Renal(175;0.00196)	Medulloblastoma(196;0.0354)|all_neural(177;0.116)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			CCGTCGTGTCCATCTTGGCCG	0.677													14	20					5.03518e-11	5.76261e-11	1	0
SNRNP48	154007	broad.mit.edu	37	6	7609064	7609064	+	Silent	SNP	G	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr6:7609064G>A	uc003mxr.2	+	9	1037	c.978G>A	c.(976-978)GGG>GGA	p.G326G	SNRNP48_uc003mxs.2_RNA	NM_152551	NP_689764	Q6IEG0	SNR48_HUMAN	U11/U12 snRNP 48K	326	Arg-rich.				mRNA processing	cytoplasm|U12-type spliceosomal complex	metal ion binding				0						TCAGGGATGGGGAAAGACACC	0.279													4	4					0	0	0	0
CD83	9308	broad.mit.edu	37	6	14133945	14133945	+	Missense_Mutation	SNP	G	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr6:14133945G>T	uc003nbi.2	+	4	626	c.448G>T	c.(448-450)GCT>TCT	p.A150S	CD83_uc003nbh.2_Missense_Mutation_p.A150S	NM_004233	NP_004224	Q01151	CD83_HUMAN	CD83 antigen isoform a	150	Helical; (Potential).				defense response|humoral immune response|signal transduction	integral to plasma membrane					0	Breast(50;0.00245)|Ovarian(93;0.137)	all_hematologic(90;0.117)				CCTGCTGCTGGCTCTGGTTAT	0.378													25	14					1.62565e-12	1.88174e-12	1	0
TRIM26	7726	broad.mit.edu	37	6	30166632	30166632	+	Silent	SNP	C	T	T	rs143331737	byFrequency	TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr6:30166632C>T	uc003npr.2	-	3	458	c.249G>A	c.(247-249)GTG>GTA	p.V83V	TRIM26_uc003nps.2_Silent_p.V83V|TRIM26_uc010jry.2_5'UTR|TRIM26_uc003npt.2_Silent_p.V83V|TRIM26_uc003npu.1_Silent_p.V83V	NM_003449	NP_003440	Q12899	TRI26_HUMAN	tripartite motif-containing 26	83							DNA binding|zinc ion binding			ovary(2)|lung(1)	3						TGCCCTTGTCCACCTTCAGCC	0.602													18	71					0	0	0	0
DDR1	780	broad.mit.edu	37	6	30861116	30861116	+	Silent	SNP	C	G	G			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr6:30861116C>G	uc003nrr.2	+	11	1522	c.1263C>G	c.(1261-1263)GGC>GGG	p.G421G	DDR1_uc010jse.2_Silent_p.G421G|DDR1_uc003nrq.2_Silent_p.G421G|DDR1_uc003nrs.2_Silent_p.G421G|DDR1_uc003nrt.2_Silent_p.G421G|DDR1_uc011dms.1_Silent_p.G439G|DDR1_uc003nru.2_Silent_p.G421G|DDR1_uc003nrv.2_Silent_p.G421G|DDR1_uc003nrw.1_Silent_p.G220G|DDR1_uc003nry.1_RNA|DDR1_uc003nrx.1_RNA	NM_013993	NP_054699	Q08345	DDR1_HUMAN	discoidin domain receptor family, member 1	421	Helical; (Potential).				cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	extracellular region|integral to plasma membrane	ATP binding|protein binding|protein binding|transmembrane receptor protein tyrosine kinase activity			lung(4)|central_nervous_system(3)|large_intestine(1)|ovary(1)	9					Imatinib(DB00619)	TCCTCATCGGCTGCCTGGTGG	0.682													12	14					0	0	0	0
LYPLA2P1	653639	broad.mit.edu	37	6	33333446	33333446	+	Missense_Mutation	SNP	C	T	T	rs115420448	by1000genomes	TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr6:33333446C>T	uc003shx.2	-	1	694	c.560G>A	c.(559-561)CGG>CAG	p.R187Q		NR_001444				SubName: Full=Lysophospholipase II; Flags: Fragment;												0						GACAACAGACCGGAGCTTCTC	0.592													5	18					0	0	0	0
LYPLA2P1	653639	broad.mit.edu	37	6	33333916	33333916	+	Missense_Mutation	SNP	G	T	T	rs211449		TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr6:33333916G>T	uc003shx.2	-	1	224	c.90C>A	c.(88-90)GAC>GAA	p.D30E		NR_001444				SubName: Full=Lysophospholipase II; Flags: Fragment;												0						TGTGCCCTGTGTCTCCAAGTC	0.562													10	42					1.58986e-06	1.68986e-06	1	0
DNAH8	1769	broad.mit.edu	37	6	38863890	38863890	+	Silent	SNP	G	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr6:38863890G>A	uc003ooe.1	+	58	8778	c.8178G>A	c.(8176-8178)GCG>GCA	p.A2726A		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						CTGATGCAGCGTCGTGTATTC	0.403													46	27					0	0	0	0
TFAP2D	83741	broad.mit.edu	37	6	50696657	50696657	+	Silent	SNP	G	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr6:50696657G>A	uc003paf.2	+	4	1199	c.687G>A	c.(685-687)GTG>GTA	p.V229V	TFAP2D_uc011dwt.1_RNA	NM_172238	NP_758438	Q7Z6R9	AP2D_HUMAN	transcription factor AP-2 beta-like 1	229							DNA binding|sequence-specific DNA binding transcription factor activity			ovary(6)|breast(1)	7	Lung NSC(77;0.0334)					AATACAAGGTGACCATTGCTG	0.493													30	33					0	0	0	0
TFAP2B	7021	broad.mit.edu	37	6	50803977	50803977	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr6:50803977G>A	uc003pag.2	+	4	971	c.805G>A	c.(805-807)GGC>AGC	p.G269S		NM_003221	NP_003212	Q92481	AP2B_HUMAN	transcription factor AP-2 beta	269					nervous system development|positive regulation of transcription from RNA polymerase II promoter		protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity				0	Lung NSC(77;0.156)					ATCTCTCCTCGGCGGAGTCCT	0.418													9	6					0	0	0	0
PKHD1	5314	broad.mit.edu	37	6	51893046	51893046	+	Silent	SNP	C	G	G			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr6:51893046C>G	uc003pah.1	-	30	3744	c.3468G>C	c.(3466-3468)TCG>TCC	p.S1156S	PKHD1_uc003pai.2_Silent_p.S1156S	NM_138694	NP_619639	P08F94	PKHD1_HUMAN	fibrocystin isoform 1	1156	Extracellular (Potential).|IPT/TIG 6; atypical.				cell-cell adhesion|cilium assembly|homeostatic process|kidney development|negative regulation of cellular component movement	anchored to external side of plasma membrane|apical plasma membrane|integral to membrane|microtubule basal body	protein binding|receptor activity			lung(15)|ovary(15)|large_intestine(5)|central_nervous_system(3)|skin(3)|breast(2)|upper_aerodigestive_tract(1)	44	Lung NSC(77;0.0605)					GGCCCCAAGCCGACTGTGTGT	0.572													95	76					0	0	0	0
LCA5	167691	broad.mit.edu	37	6	80202314	80202314	+	Silent	SNP	T	G	G			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr6:80202314T>G	uc003pix.2	-	5	1344	c.909A>C	c.(907-909)CCA>CCC	p.P303P	LCA5_uc003piy.2_Silent_p.P303P|LCA5_uc011dyq.1_RNA	NM_001122769	NP_001116241	Q86VQ0	LCA5_HUMAN	Leber congenital amaurosis 5	303					protein transport	cilium axoneme|microtubule basal body	protein binding				0		all_cancers(76;3.32e-05)|Acute lymphoblastic leukemia(125;1.1e-05)|all_hematologic(105;0.00117)|all_epithelial(107;0.0176)		BRCA - Breast invasive adenocarcinoma(397;0.0657)		GAGAGGACTTTGGCAGACGAT	0.299													7	5					0	0	0	0
SYNCRIP	10492	broad.mit.edu	37	6	86324617	86324617	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr6:86324617G>A	uc003pla.2	-	11	2270	c.1729C>T	c.(1729-1731)CGG>TGG	p.R577W	SYNCRIP_uc003pku.2_Intron|SYNCRIP_uc003pkw.2_Intron|SYNCRIP_uc003pky.2_Intron|SYNCRIP_uc003pkv.2_Intron|SYNCRIP_uc003pkx.2_Intron|SYNCRIP_uc003pkz.2_Missense_Mutation_p.R542W	NM_006372	NP_006363	O60506	HNRPQ_HUMAN	synaptotagmin binding, cytoplasmic RNA	577	Bipartite nuclear localization signal (Potential).				CRD-mediated mRNA stabilization|interspecies interaction between organisms	catalytic step 2 spliceosome|CRD-mediated mRNA stability complex|endoplasmic reticulum|histone pre-mRNA 3'end processing complex|microsome|nucleoplasm	nucleotide binding|protein binding			ovary(2)	2		all_cancers(76;0.000137)|Acute lymphoblastic leukemia(125;3.66e-08)|Prostate(29;8.2e-07)|all_hematologic(105;8.61e-05)|all_epithelial(107;0.0297)		BRCA - Breast invasive adenocarcinoma(108;0.0389)		GTCTGGCGCCGCTTGGAATCT	0.542													68	191					0	0	0	0
MCHR2	84539	broad.mit.edu	37	6	100390887	100390887	+	Missense_Mutation	SNP	G	C	C			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr6:100390887G>C	uc003pqh.1	-	4	840	c.525C>G	c.(523-525)ATC>ATG	p.I175M	MCHR2_uc003pqi.1_Missense_Mutation_p.I175M	NM_001040179	NP_001035269	Q969V1	MCHR2_HUMAN	melanin-concentrating hormone receptor 2	175	Helical; Name=4; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(3)|ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	8		all_cancers(76;4.87e-05)|Acute lymphoblastic leukemia(125;4.99e-11)|all_hematologic(75;5.82e-08)|all_epithelial(107;0.0309)|Colorectal(196;0.069)		BRCA - Breast invasive adenocarcinoma(108;0.0429)		CTTTAAATTTGATGACCTTCG	0.433													42	143					0	0	0	0
SIM1	6492	broad.mit.edu	37	6	100841606	100841606	+	Missense_Mutation	SNP	T	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr6:100841606T>A	uc003pqj.3	-	10	1534	c.1327A>T	c.(1327-1329)AGC>TGC	p.S443C	SIM1_uc010kcu.2_Missense_Mutation_p.S443C	NM_005068	NP_005059	P81133	SIM1_HUMAN	single-minded homolog 1	443	Single-minded C-terminal.				cell differentiation|nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			ovary(4)	4		all_cancers(76;9.88e-06)|Acute lymphoblastic leukemia(125;4.99e-11)|all_hematologic(75;5.82e-08)|all_epithelial(107;0.0248)|Colorectal(196;0.13)		BRCA - Breast invasive adenocarcinoma(108;0.0774)		CAGAGAGAGCTGCGGTCCGAA	0.622													92	66					0	0	0	0
TRAF3IP2	10758	broad.mit.edu	37	6	111912698	111912698	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr6:111912698C>T	uc011ebc.1	-	3	1207	c.592G>A	c.(592-594)GGA>AGA	p.G198R	TRAF3IP2_uc003pvg.2_Missense_Mutation_p.G198R|TRAF3IP2_uc003pvf.2_Missense_Mutation_p.G198R|TRAF3IP2_uc010kdw.2_Missense_Mutation_p.G198R|TRAF3IP2_uc010kdx.2_Missense_Mutation_p.G198R	NM_147686	NP_679211	O43734	CIKS_HUMAN	TRAF3 interacting protein 2 isoform 2	207					intracellular signal transduction|positive regulation of I-kappaB kinase/NF-kappaB cascade	intracellular				ovary(2)|central_nervous_system(1)	3		all_cancers(87;7.87e-06)|Acute lymphoblastic leukemia(125;3.61e-09)|all_hematologic(75;2.63e-07)|all_epithelial(87;0.0024)|Colorectal(196;0.021)		OV - Ovarian serous cystadenocarcinoma(136;0.033)|all cancers(137;0.0412)|Epithelial(106;0.0732)		GAATCATATCCCGTGTCTATG	0.622													39	96					0	0	0	0
ROS1	6098	broad.mit.edu	37	6	117710680	117710681	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr6:117710680_117710681CC>AA	uc003pxp.1	-	12	1790_1791	c.1591_1592GG>TT	c.(1591-1593)GGA>TTA	p.G531L	ROS1_uc011ebi.1_Intron|GOPC_uc003pxq.1_Intron	NM_002944	NP_002935	P08922	ROS_HUMAN	proto-oncogene c-ros-1 protein precursor	531	Extracellular (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	membrane fraction|sodium:potassium-exchanging ATPase complex	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(8)|ovary(6)|central_nervous_system(3)|skin(3)|stomach(2)|breast(2)|large_intestine(1)	25		all_cancers(87;0.00846)|all_epithelial(87;0.0242)		GBM - Glioblastoma multiforme(226;0.0387)|OV - Ovarian serous cystadenocarcinoma(136;0.0954)|all cancers(137;0.137)		CAGGTCACATCCCACGATGAAT	0.455			T	GOPC|ROS1	glioblastoma|NSCLC								16	46					0	0	0	0
LAMA2	3908	broad.mit.edu	37	6	129714237	129714237	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr6:129714237C>T	uc003qbn.2	+	37	5387	c.5282C>T	c.(5281-5283)TCC>TTC	p.S1761F	LAMA2_uc003qbo.2_Missense_Mutation_p.S1761F	NM_000426	NP_000417	P24043	LAMA2_HUMAN	laminin alpha 2 subunit isoform a precursor	1761	Domain II and I.|Potential.				cell adhesion|muscle organ development|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|breast(1)|skin(1)	10				OV - Ovarian serous cystadenocarcinoma(136;0.178)|all cancers(137;0.245)		TTTGGAGAGTCCCGGGGGGAA	0.468													22	34					0	0	0	0
AKAP7	9465	broad.mit.edu	37	6	131520611	131520611	+	Silent	SNP	T	C	C			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr6:131520611T>C	uc003qck.2	+	6	633	c.600T>C	c.(598-600)AAT>AAC	p.N200N	AKAP7_uc011ebz.1_Silent_p.N178N|AKAP7_uc003qcl.1_Silent_p.N81N	NM_016377	NP_057461	O43687	AKA7A_HUMAN	A-kinase anchor protein 7 isoform gamma	Error:Variant_position_missing_in_O43687_after_alignment					intracellular signal transduction|ion transport	apical plasma membrane|intracellular|lateral plasma membrane	protein kinase A binding			ovary(2)	2	Breast(56;0.152)			GBM - Glioblastoma multiforme(226;0.0184)|OV - Ovarian serous cystadenocarcinoma(155;0.0345)		AGACTGCAAATAGGACATTTC	0.348													10	25					0	0	0	0
GRM1	2911	broad.mit.edu	37	6	146755255	146755256	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr6:146755255_146755256CC>AA	uc010khw.1	+	9	3378_3379	c.2908_2909CC>AA	c.(2908-2910)CCG>AAG	p.P970K	GRM1_uc010khv.1_3'UTR|GRM1_uc003qll.2_3'UTR|GRM1_uc011edz.1_3'UTR|GRM1_uc011eea.1_3'UTR	NM_000838	NP_000829	Q13255	GRM1_HUMAN	glutamate receptor, metabotropic 1 isoform alpha	970	Cytoplasmic (Potential).				synaptic transmission	integral to plasma membrane	G-protein coupled receptor activity|glutamate receptor activity			lung(8)|ovary(4)|central_nervous_system(3)|large_intestine(2)|breast(2)	19		Ovarian(120;0.0387)		OV - Ovarian serous cystadenocarcinoma(155;5.35e-08)|GBM - Glioblastoma multiforme(68;0.00762)	Acamprosate(DB00659)|L-Glutamic Acid(DB00142)	TCGCTTTAGCCCGCCTGGTAGC	0.619													72	111					0	0	0	0
C6orf97	80129	broad.mit.edu	37	6	151894603	151894603	+	Missense_Mutation	SNP	A	G	G			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr6:151894603A>G	uc003qol.2	+	6	1158	c.1069A>G	c.(1069-1071)AGC>GGC	p.S357G		NM_025059	NP_079335	Q8IYT3	CF097_HUMAN	hypothetical protein LOC80129	357											0		Ovarian(120;0.126)	BRCA - Breast invasive adenocarcinoma(37;0.111)	OV - Ovarian serous cystadenocarcinoma(155;1.48e-10)		AGAAATGGACAGCCGGGAAGA	0.478													31	42					0	0	0	0
SYNE1	23345	broad.mit.edu	37	6	152772324	152772324	+	Missense_Mutation	SNP	G	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr6:152772324G>T	uc010kiw.2	-	26	3646	c.3044C>A	c.(3043-3045)GCC>GAC	p.A1015D	SYNE1_uc003qot.3_Missense_Mutation_p.A1022D|SYNE1_uc003qou.3_Missense_Mutation_p.A1015D|SYNE1_uc010kjb.1_Missense_Mutation_p.A998D|SYNE1_uc003qow.2_Missense_Mutation_p.A310D|SYNE1_uc003qox.1_Missense_Mutation_p.A531D	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	1015	Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		ATGATAAGGGGCTTCTCCTTG	0.393										HNSCC(10;0.0054)			18	35					1.40151e-16	1.73732e-16	1	0
SYNE1	23345	broad.mit.edu	37	6	152792750	152792750	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr6:152792750C>G	uc010kiw.2	-	16	2216	c.1614G>C	c.(1612-1614)CAG>CAC	p.Q538H	SYNE1_uc003qot.3_Missense_Mutation_p.Q545H|SYNE1_uc003qou.3_Missense_Mutation_p.Q538H|SYNE1_uc010kjb.1_Missense_Mutation_p.Q521H|SYNE1_uc003qpa.1_Missense_Mutation_p.Q538H|SYNE1_uc003qox.1_Missense_Mutation_p.Q54H|SYNE1_uc003qoz.2_5'UTR|SYNE1_uc003qoy.2_Missense_Mutation_p.Q105H	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	538	Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		TTTGTAGAAGCTGCTCCACTG	0.433										HNSCC(10;0.0054)			61	122					0	0	0	0
SYNJ2	8871	broad.mit.edu	37	6	158510920	158510920	+	Missense_Mutation	SNP	A	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr6:158510920A>T	uc003qqx.1	+	25	3581	c.3506A>T	c.(3505-3507)AAA>ATA	p.K1169I	SYNJ2_uc003qqw.1_Missense_Mutation_p.K1169I|SYNJ2_uc003qqy.1_Missense_Mutation_p.K882I|SYNJ2_uc003qqz.1_Missense_Mutation_p.K786I|SYNJ2_uc003qra.1_Missense_Mutation_p.K512I|SYNJ2_uc010kjp.1_Missense_Mutation_p.K52I	NM_003898	NP_003889	O15056	SYNJ2_HUMAN	synaptojanin 2	1169	Catalytic (By similarity).						nucleotide binding|phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity|RNA binding			skin(1)	1				OV - Ovarian serous cystadenocarcinoma(65;4.42e-18)|BRCA - Breast invasive adenocarcinoma(81;4.23e-05)		AAGCAGATCAAAACCACCAAT	0.522													17	14					0	0	0	0
FNDC1	84624	broad.mit.edu	37	6	159654497	159654497	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr6:159654497C>T	uc010kjv.2	+	11	3153	c.2953C>T	c.(2953-2955)CGG>TGG	p.R985W	FNDC1_uc010kjw.1_Missense_Mutation_p.R870W	NM_032532	NP_115921	Q4ZHG4	FNDC1_HUMAN	fibronectin type III domain containing 1	985						extracellular region				large_intestine(4)|ovary(3)|central_nervous_system(1)	8		Breast(66;0.000781)|Ovarian(120;0.0308)|Prostate(117;0.195)		OV - Ovarian serous cystadenocarcinoma(65;2.6e-16)|BRCA - Breast invasive adenocarcinoma(81;1.06e-05)		GCCCGCAGCACGGTCACAGCA	0.677													8	10					0	0	0	0
PDE10A	10846	broad.mit.edu	37	6	165792847	165792847	+	Silent	SNP	C	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr6:165792847C>T	uc003qun.2	-	19	2032	c.1791G>A	c.(1789-1791)GGG>GGA	p.G597G	PDE10A_uc011egj.1_RNA|PDE10A_uc011egk.1_Silent_p.G527G|PDE10A_uc003quo.2_Silent_p.G607G	NM_006661	NP_006652	Q9Y233	PDE10_HUMAN	phosphodiesterase 10A isoform 2	597					platelet activation|signal transduction	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|cAMP binding|cGMP binding|metal ion binding			ovary(3)|skin(2)	5		Breast(66;0.000425)|Prostate(117;0.104)|Ovarian(120;0.221)		OV - Ovarian serous cystadenocarcinoma(33;1.5e-17)|BRCA - Breast invasive adenocarcinoma(81;1.8e-06)|GBM - Glioblastoma multiforme(31;1.92e-05)	Dipyridamole(DB00975)	AGATATTGTGCCCTTCCAACT	0.378													13	27					0	0	0	0
EIF2AK1	27102	broad.mit.edu	37	7	6080705	6080705	+	Missense_Mutation	SNP	T	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr7:6080705T>A	uc003spp.2	-	9	1083	c.937A>T	c.(937-939)ATA>TTA	p.I313L	EIF2AK1_uc003spq.2_Missense_Mutation_p.I312L|EIF2AK1_uc011jwm.1_Missense_Mutation_p.I189L|EIF2AK1_uc003spr.1_Missense_Mutation_p.I105L	NM_014413	NP_055228	Q9BQI3	E2AK1_HUMAN	eukaryotic translation initiation factor 2-alpha	313	Protein kinase.				negative regulation of hemoglobin biosynthetic process|negative regulation of translational initiation by iron|protein autophosphorylation|response to external stimulus|response to stress	cytoplasm	ATP binding|eukaryotic translation initiation factor 2alpha kinase activity|heme binding|protein homodimerization activity			upper_aerodigestive_tract(1)|stomach(1)|lung(1)|central_nervous_system(1)	4		Ovarian(82;0.0423)		UCEC - Uterine corpus endometrioid carcinoma (126;0.106)|OV - Ovarian serous cystadenocarcinoma(56;5.22e-14)		GATTCTCTTATGACTAAATTG	0.458													77	142					0	0	0	0
THSD7A	221981	broad.mit.edu	37	7	11450926	11450926	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr7:11450926C>A	uc003ssf.3	-	18	3958	c.3706G>T	c.(3706-3708)GAG>TAG	p.E1236*		NM_015204	NP_056019	Q9UPZ6	THS7A_HUMAN	thrombospondin, type I, domain containing 7A	1236	TSP type-1 12.|Extracellular (Potential).					integral to membrane				ovary(3)	3				UCEC - Uterine corpus endometrioid carcinoma (126;0.163)		ACTGCCTTCTCACTCAGCTGA	0.413										HNSCC(18;0.044)			14	27					7.93312e-07	8.52138e-07	1	0
THSD7A	221981	broad.mit.edu	37	7	11500374	11500374	+	Missense_Mutation	SNP	C	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr7:11500374C>A	uc003ssf.3	-	11	2772	c.2520G>T	c.(2518-2520)TGG>TGT	p.W840C		NM_015204	NP_056019	Q9UPZ6	THS7A_HUMAN	thrombospondin, type I, domain containing 7A	840	Extracellular (Potential).					integral to membrane				ovary(3)	3				UCEC - Uterine corpus endometrioid carcinoma (126;0.163)		GGCATCTGCGCCATTTGTGAG	0.547										HNSCC(18;0.044)			6	22					3.59834e-05	3.74611e-05	1	0
HDAC9	9734	broad.mit.edu	37	7	18788696	18788696	+	Missense_Mutation	SNP	C	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr7:18788696C>A	uc003suh.2	+	13	2010	c.1969C>A	c.(1969-1971)CAT>AAT	p.H657N	HDAC9_uc003sue.2_Missense_Mutation_p.H657N|HDAC9_uc011jyd.1_Missense_Mutation_p.H657N|HDAC9_uc003sui.2_Missense_Mutation_p.H660N|HDAC9_uc003suj.2_Missense_Mutation_p.H616N|HDAC9_uc003sua.1_Missense_Mutation_p.H635N|HDAC9_uc010kue.1_Missense_Mutation_p.H312N	NM_058176	NP_478056	Q9UKV0	HDAC9_HUMAN	histone deacetylase 9 isoform 1	657	Histone deacetylase.				B cell differentiation|cellular response to insulin stimulus|heart development|histone H3 deacetylation|histone H4 deacetylation|inflammatory response|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|peptidyl-lysine deacetylation|positive regulation of cell migration involved in sprouting angiogenesis|regulation of skeletal muscle fiber development|transcription, DNA-dependent	cytoplasm|histone deacetylase complex|histone methyltransferase complex|transcription factor complex	histone deacetylase activity (H3-K16 specific)|histone deacetylase binding|histone deacetylase binding|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|protein binding|protein kinase C binding|repressing transcription factor binding|transcription corepressor activity			lung(2)|central_nervous_system(2)|kidney(1)	5	all_lung(11;0.187)				Valproic Acid(DB00313)	CCACCCTGAGCATGCTGGACG	0.448													14	30					0.000219431	0.000225663	1	0
DNAH11	8701	broad.mit.edu	37	7	21654860	21654860	+	Silent	SNP	G	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr7:21654860G>A	uc003svc.2	+	21	4012	c.3981G>A	c.(3979-3981)AAG>AAA	p.K1327K		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	1327	Potential.|Stem (By similarity).				microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						AATTGCTCAAGGGACTGTGGG	0.353									Kartagener_syndrome				25	38					0	0	0	0
AMPH	273	broad.mit.edu	37	7	38574590	38574590	+	Missense_Mutation	SNP	C	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr7:38574590C>A	uc003tgu.2	-	2	160	c.91G>T	c.(91-93)GCT>TCT	p.A31S	AMPH_uc003tgv.2_Missense_Mutation_p.A31S	NM_001635	NP_001626	P49418	AMPH_HUMAN	amphiphysin isoform 1	31	BAR.|Potential.				endocytosis|synaptic transmission	actin cytoskeleton|cell junction|synaptic vesicle membrane				ovary(3)|liver(1)|skin(1)	5						GTCTCATCAGCTTTCCCCAGC	0.348													16	28					3.62473e-10	4.08386e-10	1	0
ZNF716	441234	broad.mit.edu	37	7	57529304	57529304	+	Silent	SNP	C	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr7:57529304C>T	uc011kdi.1	+	4	1249	c.1137C>T	c.(1135-1137)CCC>CCT	p.P379P		NM_001159279	NP_001152751			zinc finger protein 716											ovary(2)	2						GAGAGAAACCCTACACTTGTG	0.413													3	6					0	0	0	0
NSUN5	55695	broad.mit.edu	37	7	72717963	72717963	+	Silent	SNP	T	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr7:72717963T>A	uc003txw.2	-	8	1041	c.1005A>T	c.(1003-1005)GCA>GCT	p.A335A	FKBP6_uc003twz.2_Intron|NSUN5_uc003txv.2_Silent_p.A335A|NSUN5_uc003txx.2_Silent_p.A297A|NSUN5_uc011kev.1_Silent_p.A335A	NM_018044	NP_060514	Q96P11	NSUN5_HUMAN	NOL1/NOP2/Sun domain family, member 5 isoform 2	335							methyltransferase activity				0		Lung NSC(55;0.163)				GCTGGAACCCTGCCAGGGCAT	0.622													21	53					0	0	0	0
GRM3	2913	broad.mit.edu	37	7	86415998	86415998	+	Missense_Mutation	SNP	G	C	C			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr7:86415998G>C	uc003uid.2	+	3	1989	c.890G>C	c.(889-891)TGG>TCG	p.W297S	GRM3_uc010lef.2_Missense_Mutation_p.W295S|GRM3_uc010leg.2_Missense_Mutation_p.W169S|GRM3_uc010leh.2_Intron	NM_000840	NP_000831	Q14832	GRM3_HUMAN	glutamate receptor, metabotropic 3 precursor	297	Extracellular (Potential).				synaptic transmission	integral to plasma membrane				lung(4)|ovary(3)|central_nervous_system(2)|skin(2)|haematopoietic_and_lymphoid_tissue(1)|prostate(1)	13	Esophageal squamous(14;0.0058)|all_lung(186;0.132)|Lung NSC(181;0.142)				Acamprosate(DB00659)|Nicotine(DB00184)	TCCTTCACCTGGGTGGCCAGC	0.682													31	54					0	0	0	0
PON1	5444	broad.mit.edu	37	7	94940875	94940875	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr7:94940875G>A	uc003uns.2	-	5	482	c.385C>T	c.(385-387)CTC>TTC	p.L129F	PON1_uc011kih.1_Missense_Mutation_p.L129F	NM_000446	NP_000437	P27169	PON1_HUMAN	paraoxonase 1 precursor	129					aromatic compound catabolic process|carboxylic acid catabolic process|organophosphate catabolic process|phosphatidylcholine metabolic process|positive regulation of binding|positive regulation of cholesterol efflux|positive regulation of transporter activity|response to external stimulus	spherical high-density lipoprotein particle	aryldialkylphosphatase activity|arylesterase activity|calcium ion binding|phospholipid binding|protein homodimerization activity			pancreas(1)	1	all_cancers(62;1.04e-10)|all_epithelial(64;3.67e-09)|Lung NSC(181;0.239)		STAD - Stomach adenocarcinoma(171;0.0031)		Atorvastatin(DB01076)|Cefazolin(DB01327)	ACCACCAGGAGGTACATGGCA	0.393													17	41					0	0	0	0
PON1	5444	broad.mit.edu	37	7	94944689	94944689	+	Missense_Mutation	SNP	A	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr7:94944689A>T	uc003uns.2	-	4	412	c.315T>A	c.(313-315)AGT>AGA	p.S105R	PON1_uc011kih.1_Missense_Mutation_p.S105R	NM_000446	NP_000437	P27169	PON1_HUMAN	paraoxonase 1 precursor	105					aromatic compound catabolic process|carboxylic acid catabolic process|organophosphate catabolic process|phosphatidylcholine metabolic process|positive regulation of binding|positive regulation of cholesterol efflux|positive regulation of transporter activity|response to external stimulus	spherical high-density lipoprotein particle	aryldialkylphosphatase activity|arylesterase activity|calcium ion binding|phospholipid binding|protein homodimerization activity			pancreas(1)	1	all_cancers(62;1.04e-10)|all_epithelial(64;3.67e-09)|Lung NSC(181;0.239)		STAD - Stomach adenocarcinoma(171;0.0031)		Atorvastatin(DB01076)|Cefazolin(DB01327)	CATCAAATTTACTTCCAGTGA	0.358													16	48					0	0	0	0
CYP3A4	1576	broad.mit.edu	37	7	99367466	99367466	+	Missense_Mutation	SNP	A	G	G			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr7:99367466A>G	uc003urv.1	-	6	550	c.446T>C	c.(445-447)ATT>ACT	p.I149T	CYP3A4_uc003urw.1_Missense_Mutation_p.I149T|CYP3A4_uc011kiz.1_Intron|CYP3A4_uc011kja.1_Missense_Mutation_p.I100T|CYP3A4_uc011kjb.1_Intron	NM_017460	NP_059488	P08684	CP3A4_HUMAN	cytochrome P450, family 3, subfamily A,	149					alkaloid catabolic process|androgen metabolic process|exogenous drug catabolic process|heterocycle metabolic process|monoterpenoid metabolic process|oxidative demethylation|steroid catabolic process|xenobiotic metabolic process	cell surface|endoplasmic reticulum membrane|integral to membrane|microsome	albendazole monooxygenase activity|caffeine oxidase activity|electron carrier activity|enzyme binding|heme binding|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen|oxygen binding|quinine 3-monooxygenase activity|steroid binding|taurochenodeoxycholate 6alpha-hydroxylase activity|testosterone 6-beta-hydroxylase activity|vitamin D 24-hydroxylase activity|vitamin D3 25-hydroxylase activity			central_nervous_system(3)|ovary(1)	4	Lung NSC(181;0.0144)|Esophageal squamous(72;0.0166)|all_lung(186;0.0228)				Albendazole(DB00518)|Alclometasone(DB00240)|Alfentanil(DB00802)|Alfuzosin(DB00346)|Aliskiren(DB01258)|Almotriptan(DB00918)|Alosetron(DB00969)|Alprazolam(DB00404)|Amlodipine(DB00381)|Amprenavir(DB00701)|Aprepitant(DB00673)|Aripiprazole(DB01238)|Astemizole(DB00637)|Atazanavir(DB01072)|Atorvastatin(DB01076)|Benazepril(DB00542)|Bepridil(DB01244)|Betamethasone(DB00443)|Bexarotene(DB00307)|Bortezomib(DB00188)|Bosentan(DB00559)|Bromocriptine(DB01200)|Budesonide(DB01222)|Bupivacaine(DB00297)|Buprenorphine(DB00921)|Buspirone(DB00490)|Busulfan(DB01008)|Carbamazepine(DB00564)|Cevimeline(DB00185)|Chlorpheniramine(DB01114)|Ciclesonide(DB01410)|Cilostazol(DB01166)|Cinacalcet(DB01012)|Cisapride(DB00604)|Clarithromycin(DB01211)|Clindamycin(DB01190)|Clofibrate(DB00636)|Clonazepam(DB01068)|Clopidogrel(DB00758)|Cocaine(DB00907)|Conivaptan(DB00872)|Conjugated Estrogens(DB00286)|Cyproterone(DB04839)|Darifenacin(DB00496)|Darunavir(DB01264)|Dasatinib(DB01254)|Delavirdine(DB00705)|Desogestrel(DB00304)|Dexamethasone(DB01234)|Diazepam(DB00829)|Dihydroergotamine(DB00320)|Diltiazem(DB00343)|Diphenhydramine(DB01075)|Disopyramide(DB00280)|Dofetilide(DB00204)|Dolasetron(DB00757)|Domperidone(DB01184)|Donepezil(DB00843)|Doxorubicin(DB00997)|Drospirenone(DB01395)|Dutasteride(DB01126)|Efavirenz(DB00625)|Eletriptan(DB00216)|Enalapril(DB00584)|Epirubicin(DB00445)|Eplerenone(DB00700)|Ergotamine(DB00696)|Erlotinib(DB00530)|Erythromycin(DB00199)|Escitalopram(DB01175)|Esomeprazole(DB00736)|Estazolam(DB01215)|Eszopiclone(DB00402)|Ethinyl Estradiol(DB00977)|Ethosuximide(DB00593)|Etonogestrel(DB00294)|Etoposide(DB00773)|Etoricoxib(DB01628)|Exemestane(DB00990)|Felodipine(DB01023)|Fentanyl(DB00813)|Fexofenadine(DB00950)|Finasteride(DB01216)|Fluconazole(DB00196)|Flumethasone Pivalate(DB00663)|Flunisolide(DB00180)|Fluocinolone Acetonide(DB00591)|Fluocinonide(DB01047)|Fluorometholone(DB00324)|Flurandrenolide(DB00846)|Fluticasone Propionate(DB00588)|Fosamprenavir(DB01319)|Fulvestrant(DB00947)|Galantamine(DB00674)|Gefitinib(DB00317)|Gemfibrozil(DB01241)|Granisetron(DB00889)|Grepafloxacin(DB00365)|Halofantrine(DB01218)|Hydrocodone(DB00956)|Hydrocortamate(DB00769)|Hydrocortisone(DB00741)|Hydromorphone(DB00327)|Imatinib(DB00619)|Indinavir(DB00224)|Ipratropium(DB00332)|Irinotecan(DB00762)|Isosorbide Dinitrate(DB00883)|Isosorbide Mononitrate(DB01020)|Isradipine(DB00270)|Itraconazole(DB01167)|Ketoconazole(DB01026)|Lapatinib(DB01259)|Lercanidipine(DB00528)|Letrozole(DB01006)|Levobupivacaine(DB01002)|Levomethadyl Acetate(DB01227)|Levothyroxine(DB00451)|Lomustine(DB01206)|Loperamide(DB00836)|Lopinavir(DB01601)|Loratadine(DB00455)|Losartan(DB00678)|Lovastatin(DB00227)|Maraviroc(DB04835)|Marinol(DB00470)|Mebendazole(DB00643)|Medroxyprogesterone(DB00603)|Methadone(DB00333)|Methylprednisolone(DB00959)|Metyrapone(DB01011)|Mibefradil(DB01388)|Midazolam(DB00683)|Mifepristone(DB00834)|Mirtazapine(DB00370)|Modafinil(DB00745)|Mometasone(DB00764)|Montelukast(DB00471)|Nateglinide(DB00731)|Nefazodone(DB01149)|Nelfinavir(DB00220)|Nevirapine(DB00238)|Nicardipine(DB00622)|Nifedipine(DB01115)|Nimodipine(DB00393)|Nisoldipine(DB00401)|Nitrendipine(DB01054)|Norethindrone(DB00717)|Norgestrel(DB00506)|Nystatin(DB00646)|Ondansetron(DB00904)|Oxybutynin(DB01062)|Paclitaxel(DB01229)|Paliperidone(DB01267)|Palonosetron(DB00377)|Pantoprazole(DB00213)|Paricalcitol(DB00910)|Phenmetrazine(DB00830)|Pimecrolimus(DB00337)|Pimozide(DB01100)|Pioglitazone(DB01132)|Posaconazole(DB01263)|Pranlukast(DB01411)|Prednisolone(DB00860)|Prednisone(DB00635)|Prochlorperazine(DB00433)|Quetiapine(DB01224)|Quinapril(DB00881)|Quinine(DB00468)|Rabeprazole(DB01129)|Ranolazine(DB00243)|Reboxetine(DB00234)|Retapamulin(DB01256)|Rifabutin(DB00615)|Rifampin(DB01045)|Rimonabant(DB06155)|Ritonavir(DB00503)|Rofecoxib(DB00533)|Roxithromycin(DB00778)|Salmeterol(DB00938)|Saquinavir(DB01232)|Sertindole(DB06144)|Sibutramine(DB01105)|Simvastatin(DB00641)|Sirolimus(DB00877)|Sitagliptin(DB01261)|Solifenacin(DB01591)|Sorafenib(DB00398)|Sunitinib(DB01268)|Tacrolimus(DB00864)|Tadalafil(DB00820)|Tamoxifen(DB00675)|Telithromycin(DB00976)|Terconazole(DB00251)|Terfenadine(DB00342)|Testosterone(DB00624)|Tiagabine(DB00906)|Ticlopidine(DB00208)|Tinidazole(DB00911)|Tiotropium(DB01409)|Tipranavir(DB00932)|Toremifene(DB00539)|Triazolam(DB00897)|Trimetrexate(DB01157)|Troglitazone(DB00197)|Valdecoxib(DB00580)|Vardenafil(DB00862)|Vinblastine(DB00570)|Vincristine(DB00541)|Vindesine(DB00309)|Vinorelbine(DB00361)|Voriconazole(DB00582)|Zaleplon(DB00962)|Zileuton(DB00744)|Ziprasidone(DB00246)|Zolpidem(DB00425)|Zonisamide(DB00909)	ATACTGGGCAATGATAGGGAC	0.498													37	69					0	0	0	0
SERPINE1	5054	broad.mit.edu	37	7	100776987	100776987	+	Missense_Mutation	SNP	A	G	G			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr7:100776987A>G	uc003uxt.2	+	5	860	c.712A>G	c.(712-714)ACG>GCG	p.T238A	SERPINE1_uc011kkj.1_Missense_Mutation_p.T223A|SERPINE1_uc003uxu.1_Missense_Mutation_p.T69A	NM_000602	NP_000593	P05121	PAI1_HUMAN	plasminogen activator inhibitor-1 isoform 1	238					angiogenesis|cellular response to chemical stimulus|cellular response to lipopolysaccharide|chronological cell aging|defense response to Gram-negative bacterium|fibrinolysis|negative regulation of apoptosis|negative regulation of cell adhesion mediated by integrin|negative regulation of fibrinolysis|negative regulation of plasminogen activation|negative regulation of smooth muscle cell migration|negative regulation of smooth muscle cell-matrix adhesion|negative regulation of vascular wound healing|platelet activation|platelet degranulation|positive regulation of angiogenesis|positive regulation of interleukin-8 production|positive regulation of leukotriene production involved in inflammatory response|positive regulation of monocyte chemotaxis|positive regulation of receptor-mediated endocytosis|regulation of receptor activity	extracellular matrix|extracellular space|plasma membrane|platelet alpha granule lumen	protease binding|serine-type endopeptidase inhibitor activity			ovary(1)|lung(1)|central_nervous_system(1)	3	Lung NSC(181;0.136)|all_lung(186;0.182)				Atorvastatin(DB01076)|Dimethyl sulfoxide(DB01093)|Drotrecogin alfa(DB00055)|Simvastatin(DB00641)|Tenecteplase(DB00031)|Troglitazone(DB00197)|Urokinase(DB00013)	TGAGTTCACCACGCCCGATGG	0.547													41	73					0	0	0	0
TMEM168	64418	broad.mit.edu	37	7	112423756	112423756	+	Missense_Mutation	SNP	C	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr7:112423756C>A	uc003vgn.2	-	2	1517	c.1125G>T	c.(1123-1125)TGG>TGT	p.W375C	TMEM168_uc010lju.2_Missense_Mutation_p.W375C|TMEM168_uc011kmr.1_Intron	NM_022484	NP_071929	Q9H0V1	TM168_HUMAN	transmembrane protein 168	375						integral to membrane|transport vesicle				ovary(1)|central_nervous_system(1)	2						AGCTTACCTGCCAGGAAACTG	0.398													30	57					3.03874e-20	3.86126e-20	1	0
SLC35B4	84912	broad.mit.edu	37	7	133979788	133979788	+	Missense_Mutation	SNP	C	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr7:133979788C>A	uc003vrn.2	-	10	1117	c.793G>T	c.(793-795)GCC>TCC	p.A265S	SLC35B4_uc010lmk.2_Missense_Mutation_p.A129S|SLC35B4_uc010lml.1_Intron	NM_032826	NP_116215	Q969S0	S35B4_HUMAN	solute carrier family 35, member B4	265	Helical; (Potential).					Golgi membrane|integral to membrane	UDP-N-acetylglucosamine transmembrane transporter activity|UDP-xylose transmembrane transporter activity			skin(1)	1						GTGAGGGAGGCGCATTCTGTG	0.532													133	263					1.86983e-63	2.64806e-63	1	0
SLC13A4	26266	broad.mit.edu	37	7	135378956	135378956	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr7:135378956C>G	uc003vta.2	-	10	1736	c.1047G>C	c.(1045-1047)AAG>AAC	p.K349N	SLC13A4_uc003vtb.2_Missense_Mutation_p.K350N	NM_012450	NP_036582	Q9UKG4	S13A4_HUMAN	solute carrier family 13 (sodium/sulfate	349						integral to plasma membrane	sodium:sulfate symporter activity				0						TGGTCTTCTTCTTCTTGCTCA	0.403													30	58					0	0	0	0
TMEM176B	28959	broad.mit.edu	37	7	150490256	150490256	+	Missense_Mutation	SNP	T	C	C			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr7:150490256T>C	uc003wht.3	-	5	686	c.520A>G	c.(520-522)ACT>GCT	p.T174A	TMEM176B_uc003whu.3_Missense_Mutation_p.T174A|TMEM176B_uc003whv.3_Missense_Mutation_p.T137A|TMEM176B_uc003whw.3_Missense_Mutation_p.T174A	NM_001101313	NP_001094783	Q3YBM2	T176B_HUMAN	transmembrane protein 176B isoform a	174					cell differentiation|organ morphogenesis	integral to membrane|nuclear membrane				ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		CTGTACCCAGTGGTAGGGAAG	0.512													27	56					0	0	0	0
RNF32	140545	broad.mit.edu	37	7	156450872	156450872	+	Silent	SNP	C	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr7:156450872C>T	uc003wmo.2	+	6	683	c.501C>T	c.(499-501)CTC>CTT	p.L167L	RNF32_uc010lql.1_RNA|RNF32_uc010lqm.2_Silent_p.L167L|RNF32_uc003wmq.2_Silent_p.L167L|RNF32_uc003wmr.2_Silent_p.L167L|RNF32_uc003wms.2_Silent_p.L167L|RNF32_uc003wmu.2_RNA|RNF32_uc003wmt.2_Silent_p.L167L	NM_030936	NP_112198	Q9H0A6	RNF32_HUMAN	ring finger protein 32	167	RING-type 1; atypical.					aggresome|endosome	protein binding|zinc ion binding				0	Ovarian(565;0.218)	all_hematologic(28;0.0592)	OV - Ovarian serous cystadenocarcinoma(82;0.00291)	UCEC - Uterine corpus endometrioid carcinoma (81;0.169)		CCTGTCCTCTCTGTAGAAAGA	0.428													9	27					0	0	0	0
BNIP3L	665	broad.mit.edu	37	8	26238681	26238681	+	5'Flank	SNP	A	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr8:26238681A>T	uc003xex.1	+						uc003xew.2_RNA|BNIP3L_uc010luh.1_5'Flank|BNIP3L_uc010lui.1_5'Flank	NM_004331	NP_004322	O60238	BNI3L_HUMAN	BCL2/adenovirus E1B 19kD-interacting protein						apoptosis|defense response to virus|induction of apoptosis|interspecies interaction between organisms|mitochondrial protein catabolic process|negative regulation of survival gene product expression	endoplasmic reticulum|integral to membrane|mitochondrial outer membrane|nuclear envelope	lamin binding|protein heterodimerization activity|protein homodimerization activity				0		all_cancers(63;0.086)|Ovarian(32;2.61e-05)|all_epithelial(46;0.0514)|Prostate(55;0.157)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0019)|Epithelial(17;1.59e-12)|all cancers(2;3.75e-11)|OV - Ovarian serous cystadenocarcinoma(2;2.57e-08)|Colorectal(74;0.135)		GAAGATCTGGATCCAATACAG	0.373													20	15					0	0	0	0
RAB11FIP1	80223	broad.mit.edu	37	8	37729787	37729787	+	Missense_Mutation	SNP	C	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr8:37729787C>A	uc003xkm.1	-	4	2577	c.2533G>T	c.(2533-2535)GCT>TCT	p.A845S	RAB11FIP1_uc010lvz.1_Intron|RAB11FIP1_uc003xkn.1_Intron|RAB11FIP1_uc003xkl.1_Missense_Mutation_p.A174S|RAB11FIP1_uc003xko.1_Missense_Mutation_p.A174S|RAB11FIP1_uc003xkp.1_Intron	NM_001002814	NP_001002814	Q6WKZ4	RFIP1_HUMAN	RAB11 family interacting protein 1 isoform 3	845					protein transport	centrosome|phagocytic vesicle membrane|recycling endosome	protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3		Lung NSC(58;0.118)|all_lung(54;0.195)	LUSC - Lung squamous cell carcinoma(8;3.62e-11)			GCGTTTCCAGCAACAGACCAT	0.622													83	44					1.61229e-46	2.25187e-46	1	0
RAB11FIP1	80223	broad.mit.edu	37	8	37756684	37756684	+	Silent	SNP	C	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr8:37756684C>T	uc003xkm.1	-	1	320	c.276G>A	c.(274-276)GTG>GTA	p.V92V	RAB11FIP1_uc010lvz.1_Intron|RAB11FIP1_uc003xkn.1_Silent_p.V92V	NM_001002814	NP_001002814	Q6WKZ4	RFIP1_HUMAN	RAB11 family interacting protein 1 isoform 3	92	C2.				protein transport	centrosome|phagocytic vesicle membrane|recycling endosome	protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3		Lung NSC(58;0.118)|all_lung(54;0.195)	LUSC - Lung squamous cell carcinoma(8;3.62e-11)			CGCGGTGCAGCACGGTGAGCT	0.741													11	10					0	0	0	0
NPBWR1	2831	broad.mit.edu	37	8	53853443	53853443	+	Missense_Mutation	SNP	G	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr8:53853443G>T	uc011ldu.1	+	1	976	c.976G>T	c.(976-978)GCG>TCG	p.A326S		NM_005285	NP_005276	P48145	NPBW1_HUMAN	G protein-coupled receptor 7	326	Cytoplasmic (Potential).				synaptic transmission	plasma membrane	opioid receptor activity|protein binding			ovary(2)|breast(1)	3		Lung NSC(129;0.0222)|all_epithelial(80;0.0301)|all_lung(136;0.0431)				AACTTGCCGCGCGGCAGCCTG	0.697													9	24					0.000442599	0.000453329	1	0
RP1	6101	broad.mit.edu	37	8	55539327	55539327	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr8:55539327G>A	uc003xsd.1	+	4	3033	c.2885G>A	c.(2884-2886)GGA>GAA	p.G962E	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	962					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			ACAAATTCTGGAAAAATAAGT	0.313													20	38					0	0	0	0
EYA1	2138	broad.mit.edu	37	8	72246403	72246403	+	Missense_Mutation	SNP	G	C	C			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr8:72246403G>C	uc003xys.3	-	3	418	c.131C>G	c.(130-132)ACA>AGA	p.T44R	EYA1_uc003xyr.3_Missense_Mutation_p.T44R|EYA1_uc003xyt.3_Missense_Mutation_p.T11R|EYA1_uc010lzf.2_5'UTR|EYA1_uc003xyu.2_Missense_Mutation_p.T44R|EYA1_uc011lfe.1_Missense_Mutation_p.T44R|EYA1_uc003xyv.2_5'UTR	NM_172058	NP_742055	Q99502	EYA1_HUMAN	eyes absent 1 isoform b	44					double-strand break repair|histone dephosphorylation|positive regulation of DNA repair|protein sumoylation|regulation of transcription, DNA-dependent|response to ionizing radiation|sensory perception of sound|transcription, DNA-dependent	cytoplasm|nucleus	metal ion binding|protein tyrosine phosphatase activity			ovary(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	5	Breast(64;0.046)		Epithelial(68;0.0837)|all cancers(69;0.247)			CATTGGCTCTGTTTTAACTAC	0.328													25	52					0	0	0	0
ZFHX4	79776	broad.mit.edu	37	8	77763218	77763218	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr8:77763218C>G	uc003yav.2	+	10	4313	c.3926C>G	c.(3925-3927)CCC>CGC	p.P1309R	ZFHX4_uc003yau.1_Missense_Mutation_p.P1354R|ZFHX4_uc003yaw.1_Missense_Mutation_p.P1309R	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	1309						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			ACTAAAGAACCCTTGGAAGTC	0.418										HNSCC(33;0.089)			9	16					0	0	0	0
MMP16	4325	broad.mit.edu	37	8	89068480	89068480	+	Missense_Mutation	SNP	T	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr8:89068480T>A	uc003yeb.3	-	8	1531	c.1249A>T	c.(1249-1251)ACA>TCA	p.T417S		NM_005941	NP_005932	P51512	MMP16_HUMAN	matrix metalloproteinase 16 isoform 1	417	Hemopexin-like 2.|Extracellular (Potential).				collagen catabolic process|proteolysis	cell surface|integral to plasma membrane|proteinaceous extracellular matrix	calcium ion binding|enzyme activator activity|metalloendopeptidase activity|zinc ion binding			upper_aerodigestive_tract(2)|ovary(2)|central_nervous_system(1)|urinary_tract(1)|skin(1)|kidney(1)	8						TGAAGAGTTGTATCCTTGAAC	0.328													36	49					0	0	0	0
CSMD3	114788	broad.mit.edu	37	8	113529397	113529397	+	Missense_Mutation	SNP	C	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr8:113529397C>A	uc003ynu.2	-	28	4781	c.4622G>T	c.(4621-4623)GGG>GTG	p.G1541V	CSMD3_uc003yns.2_Missense_Mutation_p.G813V|CSMD3_uc003ynt.2_Missense_Mutation_p.G1501V|CSMD3_uc011lhx.1_Missense_Mutation_p.G1437V	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	1541	Extracellular (Potential).|Sushi 8.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						TCTTCCATCCCCATTTCGAGT	0.448										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			20	35					2.89027e-11	3.31531e-11	1	0
CSMD3	114788	broad.mit.edu	37	8	114186129	114186129	+	Silent	SNP	A	G	G			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr8:114186129A>G	uc003ynu.2	-	4	690	c.531T>C	c.(529-531)TCT>TCC	p.S177S	CSMD3_uc003ynt.2_Silent_p.S137S|CSMD3_uc011lhx.1_Silent_p.S177S|CSMD3_uc010mcx.1_Silent_p.S177S	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	177	Extracellular (Potential).|Sushi 1.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						GATTTCCACAAGAGCTACTCT	0.373										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			21	31					0	0	0	0
KANK1	23189	broad.mit.edu	37	9	730159	730159	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr9:730159C>T	uc003zgl.1	+	8	3456	c.2807C>T	c.(2806-2808)CCA>CTA	p.P936L	KANK1_uc003zgm.2_Missense_Mutation_p.P936L|KANK1_uc003zgn.1_Missense_Mutation_p.P936L|KANK1_uc003zgs.1_Missense_Mutation_p.P778L|KANK1_uc010mgx.1_5'Flank|KANK1_uc010mgy.1_5'Flank	NM_015158	NP_055973	Q14678	KANK1_HUMAN	KN motif and ankyrin repeat domains 1 isoform a	936					negative regulation of actin filament polymerization	cytoplasm				ovary(2)|central_nervous_system(1)|pancreas(1)	4		Lung NSC(10;9.84e-12)|all_lung(10;1.02e-11)|Breast(48;0.128)		Epithelial(6;0.000153)|OV - Ovarian serous cystadenocarcinoma(1;0.000358)|Lung(218;0.0222)		GAAGGAAAGCCAATCAGCAGC	0.547													25	15					0	0	0	0
GLDC	2731	broad.mit.edu	37	9	6602195	6602195	+	Missense_Mutation	SNP	C	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr9:6602195C>A	uc003zkc.2	-	8	1262	c.1069G>T	c.(1069-1071)GGG>TGG	p.G357W		NM_000170	NP_000161	P23378	GCSP_HUMAN	glycine dehydrogenase (decarboxylating)	357					glycine catabolic process	mitochondrion	electron carrier activity|glycine dehydrogenase (decarboxylating) activity|lyase activity|pyridoxal phosphate binding			ovary(2)	2		Acute lymphoblastic leukemia(23;0.161)		GBM - Glioblastoma multiforme(50;0.0421)|Lung(218;0.134)	Glycine(DB00145)|Pyridoxal Phosphate(DB00114)	ACTTCTTTCCCAGTGGCATCT	0.453													14	16					9.16793e-09	1.00827e-08	1	0
CDKN2A	1029	broad.mit.edu	37	9	21971017	21971017	+	Missense_Mutation	SNP	G	T	T	rs121913386		TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr9:21971017G>T	uc003zpk.2	-	2	553	c.341C>A	c.(340-342)CCC>CAC	p.P114H	MTAP_uc003zpi.1_Intron|CDKN2A_uc003zpj.2_3'UTR|CDKN2A_uc010miu.2_RNA|CDKN2A_uc003zpl.2_Silent_p.A169A	NM_000077	NP_000068	P42771	CD2A1_HUMAN	cyclin-dependent kinase inhibitor 2A isoform 1	114	ANK 4.		P -> L (in non-small cell lung carcinoma).|P -> S (found in some patients with melanoma; loss of CDK4 binding).		cell cycle arrest|cell cycle checkpoint|G1 phase of mitotic cell cycle|G1/S transition of mitotic cell cycle|induction of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of cell-matrix adhesion|negative regulation of cyclin-dependent protein kinase activity|negative regulation of NF-kappaB transcription factor activity|positive regulation of macrophage apoptosis|positive regulation of smooth muscle cell apoptosis|Ras protein signal transduction|replicative senescence	cytosol|nucleus	cyclin-dependent protein kinase inhibitor activity|NF-kappaB binding|protein binding|protein binding|protein kinase binding	p.0?(1112)|p.P114L(21)|p.?(13)|p.P114H(3)|p.H83fs*2(2)|p.P114S(2)|p.A68fs*3(1)|p.P114P(1)|p.V115fs*11(1)		haematopoietic_and_lymphoid_tissue(647)|skin(419)|upper_aerodigestive_tract(414)|central_nervous_system(381)|lung(325)|pancreas(244)|oesophagus(230)|urinary_tract(225)|pleura(94)|liver(91)|soft_tissue(79)|bone(77)|ovary(76)|biliary_tract(71)|stomach(46)|breast(46)|kidney(39)|NS(28)|thyroid(24)|cervix(23)|meninges(18)|genital_tract(15)|endometrium(13)|prostate(11)|autonomic_ganglia(10)|salivary_gland(10)|large_intestine(9)|adrenal_gland(6)|eye(4)|vulva(2)|small_intestine(1)	3678		all_cancers(5;0)|Acute lymphoblastic leukemia(3;0)|all_hematologic(3;0)|all_epithelial(2;2.37e-290)|Lung NSC(2;1.26e-139)|all_lung(2;4.48e-131)|Glioma(2;3.26e-60)|all_neural(2;2.1e-52)|Renal(3;1.07e-46)|Esophageal squamous(3;3.83e-46)|Melanoma(2;2.74e-34)|Breast(3;1.14e-11)|Ovarian(3;0.000128)|Hepatocellular(5;0.00162)|Colorectal(97;0.172)		all cancers(2;0)|GBM - Glioblastoma multiforme(3;0)|Lung(2;4.07e-74)|Epithelial(2;1.08e-61)|LUSC - Lung squamous cell carcinoma(2;3.82e-48)|LUAD - Lung adenocarcinoma(2;4.56e-26)|OV - Ovarian serous cystadenocarcinoma(39;7.64e-10)|BRCA - Breast invasive adenocarcinoma(2;5.01e-09)|STAD - Stomach adenocarcinoma(4;4.63e-07)|Kidney(2;5.79e-07)|KIRC - Kidney renal clear cell carcinoma(2;7.27e-07)|COAD - Colon adenocarcinoma(8;5.15e-05)		CAGGTCCACGGGCAGACGGCC	0.731	P114L(SKMEL30_SKIN)|P114L(WM983B_SKIN)	17							Uveal_Melanoma_Familial|Familial_Malignant_Melanoma_and_Tumors_of_the_Nervous_System|Hereditary_Melanoma	HNSCC(2;<9.43e_08)|TSP Lung(5;3.83e-07)			22	29					7.33628e-21	9.369e-21	1	0
TOPORS	10210	broad.mit.edu	37	9	32541632	32541632	+	Missense_Mutation	SNP	T	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr9:32541632T>A	uc003zrb.2	-	3	3058	c.2891A>T	c.(2890-2892)AAG>ATG	p.K964M	TOPORS_uc003zrc.2_Missense_Mutation_p.K897M	NM_005802	NP_005793	Q9NS56	TOPRS_HUMAN	topoisomerase I binding, arginine/serine-rich	964					DNA damage response, signal transduction resulting in induction of apoptosis|maintenance of protein location in nucleus|proteasomal ubiquitin-dependent protein catabolic process|protein sumoylation|transcription, DNA-dependent	nuclear speck|PML body	antigen binding|DNA binding|DNA topoisomerase I binding|SUMO ligase activity|ubiquitin-protein ligase activity|zinc ion binding			ovary(3)|upper_aerodigestive_tract(1)|skin(1)	5			LUSC - Lung squamous cell carcinoma(29;0.0181)	GBM - Glioblastoma multiforme(74;0.0018)		ATCACATTCCTTGTCCAGCAC	0.388													68	38					0	0	0	0
TRPM6	140803	broad.mit.edu	37	9	77377127	77377127	+	Missense_Mutation	SNP	C	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr9:77377127C>A	uc004ajl.1	-	26	4698	c.4460G>T	c.(4459-4461)AGT>ATT	p.S1487I	TRPM6_uc004ajk.1_Missense_Mutation_p.S1482I|TRPM6_uc010mpb.1_RNA|TRPM6_uc010mpc.1_Intron|TRPM6_uc010mpd.1_Intron|TRPM6_uc010mpe.1_Intron|TRPM6_uc004ajj.1_Missense_Mutation_p.S443I	NM_017662	NP_060132	Q9BX84	TRPM6_HUMAN	transient receptor potential cation channel,	1487	Cytoplasmic (Potential).				response to toxin	integral to membrane	ATP binding|calcium channel activity|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)|stomach(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	8						GTGCTGTTCACTCCGAGAGGA	0.502													88	40					9.07295e-45	1.26373e-44	1	0
TLE1	7088	broad.mit.edu	37	9	84230971	84230971	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr9:84230971C>G	uc004aly.2	-	11	1285	c.844G>C	c.(844-846)GAT>CAT	p.D282H	TLE1_uc004alz.2_Missense_Mutation_p.D292H|TLE1_uc011lsr.1_Missense_Mutation_p.D282H|TLE1_uc004ama.1_Missense_Mutation_p.D282H|TLE1_uc011lss.1_Missense_Mutation_p.D208H	NM_005077	NP_005068	Q04724	TLE1_HUMAN	transducin-like enhancer protein 1	282	Pro/Ser-rich.				negative regulation of Wnt receptor signaling pathway|organ morphogenesis|transcription, DNA-dependent|Wnt receptor signaling pathway		transcription factor binding			ovary(1)|skin(1)	2						CTAGAAGCATCCTTCTTTAGC	0.493													51	114					0	0	0	0
LOC441454	441454	broad.mit.edu	37	9	99672489	99672489	+	RNA	SNP	G	C	C			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr9:99672489G>C	uc011luq.1	+	1		c.1133G>C				NR_028350				Homo sapiens prothymosin, alpha pseudogene (LOC441454), non-coding RNA.												0						AGGAAAATGGGGAGCAGGAGG	0.299													10	4					0	0	0	0
PTPN3	5774	broad.mit.edu	37	9	112144045	112144045	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr9:112144045C>T	uc004bed.2	-	25	2663	c.2551G>A	c.(2551-2553)GTG>ATG	p.V851M	PTPN3_uc004beb.2_Missense_Mutation_p.V720M|PTPN3_uc004bec.2_Missense_Mutation_p.V675M|PTPN3_uc010mtu.2_RNA|PTPN3_uc011lwg.1_Missense_Mutation_p.V806M|PTPN3_uc011lwh.1_Missense_Mutation_p.V697M|PTPN3_uc011lwd.1_Missense_Mutation_p.V319M|PTPN3_uc011lwe.1_Missense_Mutation_p.V564M|PTPN3_uc011lwf.1_Missense_Mutation_p.V519M	NM_002829	NP_002820	P26045	PTN3_HUMAN	protein tyrosine phosphatase, non-receptor type	851	Tyrosine-protein phosphatase.				negative regulation of membrane protein ectodomain proteolysis|negative regulation of mitotic cell cycle	cytoplasm|cytoskeleton|internal side of plasma membrane	ATPase binding|cytoskeletal protein binding|phosphotyrosine binding|protein tyrosine phosphatase activity			ovary(3)	3						GTGACCAACACACCGGTTCGA	0.537													37	64					0	0	0	0
SVEP1	79987	broad.mit.edu	37	9	113168502	113168502	+	Silent	SNP	C	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr9:113168502C>T	uc010mtz.2	-	38	9715	c.9378G>A	c.(9376-9378)CCG>CCA	p.P3126P	SVEP1_uc010mty.2_Silent_p.P1052P	NM_153366	NP_699197	Q4LDE5	SVEP1_HUMAN	polydom	3126	Sushi 29.				cell adhesion	cytoplasm|extracellular region|membrane	calcium ion binding			ovary(7)	7						TGGCGACAGACGGTGGGGACC	0.527													101	47					0	0	0	0
CDK5RAP2	55755	broad.mit.edu	37	9	123215784	123215784	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr9:123215784C>T	uc004bkf.2	-	21	2924	c.2743G>A	c.(2743-2745)GTG>ATG	p.V915M	CDK5RAP2_uc004bke.2_Missense_Mutation_p.V200M|CDK5RAP2_uc004bkg.2_Missense_Mutation_p.V915M|CDK5RAP2_uc011lxw.1_Missense_Mutation_p.V180M|CDK5RAP2_uc011lxx.1_RNA|CDK5RAP2_uc011lxy.1_RNA|CDK5RAP2_uc011lxz.1_Missense_Mutation_p.V180M|CDK5RAP2_uc011lya.1_Missense_Mutation_p.V180M|CDK5RAP2_uc004bkh.1_Intron|CDK5RAP2_uc004bki.2_Missense_Mutation_p.V682M	NM_018249	NP_060719	Q96SN8	CK5P2_HUMAN	CDK5 regulatory subunit associated protein 2	915					brain development|centrosome organization|chromosome segregation|G2/M transition of mitotic cell cycle|microtubule bundle formation|negative regulation of centriole replication|positive regulation of transcription, DNA-dependent|regulation of neuron differentiation|regulation of spindle checkpoint	cytosol|Golgi apparatus|microtubule|pericentriolar material|perinuclear region of cytoplasm|spindle pole	calmodulin binding|microtubule binding|neuronal Cdc2-like kinase binding|transcription regulatory region DNA binding			ovary(2)|lung(1)|skin(1)	4						CACCCAGGCACCCCGTGCAGG	0.483													46	139					0	0	0	0
PNPLA4	8228	broad.mit.edu	37	X	7870155	7870155	+	Missense_Mutation	SNP	C	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chrX:7870155C>A	uc011mhq.1	-	6	667	c.505G>T	c.(505-507)GCT>TCT	p.A169S	PNPLA4_uc011mhr.1_Missense_Mutation_p.A169S|PNPLA4_uc011mhs.1_Missense_Mutation_p.A82S	NM_004650	NP_004641	P41247	PLPL4_HUMAN	patatin-like phospholipase domain containing 4	169	Patatin.				lipid catabolic process		triglyceride lipase activity				0		Colorectal(8;0.0329)|Medulloblastoma(8;0.232)				ATGGGAAGAGCGTTGGTGAGG	0.537													24	8					1.42536e-11	1.63867e-11	1	0
EGFL6	25975	broad.mit.edu	37	X	13612977	13612977	+	Missense_Mutation	SNP	G	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chrX:13612977G>T	uc004cvi.2	+	3	450	c.210G>T	c.(208-210)AAG>AAT	p.K70N	EGFL6_uc004cvj.2_Missense_Mutation_p.K70N|EGFL6_uc011mik.1_5'UTR	NM_015507	NP_056322	Q8IUX8	EGFL6_HUMAN	epidermal growth factor-like protein 6	70	EGF-like 1.				cell adhesion|cell cycle|cell differentiation|multicellular organismal development	basement membrane|extracellular space|membrane	calcium ion binding|integrin binding			breast(2)	2						CTGGATGTAAGTTTGGTGAGT	0.458													22	17					1.75199e-13	2.06571e-13	1	0
KLHL34	257240	broad.mit.edu	37	X	21675294	21675294	+	Missense_Mutation	SNP	G	C	C			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chrX:21675294G>C	uc004czz.1	-	1	1155	c.613C>G	c.(613-615)CGG>GGG	p.R205G		NM_153270	NP_695002	Q8N239	KLH34_HUMAN	kelch-like 34	205	BACK.									ovary(1)	1						GGCTCCTGCCGCAACCAAGCT	0.672													6	3					0	0	0	0
FAM48B1	100130302	broad.mit.edu	37	X	24382859	24382859	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chrX:24382859G>A	uc011mjx.1	+	1	1982	c.1982G>A	c.(1981-1983)GGT>GAT	p.G661D		NM_001136234	NP_001129706			hypothetical protein LOC100130302											kidney(1)	1						GCAAGGCCCGGTGCAGTGCAG	0.617													35	15					0	0	0	0
Unknown	0	broad.mit.edu	37	X	26179699	26179699	+	IGR	SNP	G	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chrX:26179699G>A								MAGEB18 (20847 upstream) : MAGEB6 (30858 downstream)																							CTATGGGGATGCTCGGAAGAT	0.498													80	44					0	0	0	0
MAGEB6	158809	broad.mit.edu	37	X	26212046	26212047	+	Missense_Mutation	DNP	CC	AT	AT			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chrX:26212046_26212047CC>AT	uc004dbr.2	+	2	232_233	c.83_84CC>AT	c.(82-84)CCC>CAT	p.P28H	MAGEB6_uc010ngc.1_5'UTR	NM_173523	NP_775794	Q8N7X4	MAGB6_HUMAN	melanoma antigen family B, 6	28										ovary(3)	3						CTCACGGGTCCCCAGGCCACTG	0.569													17	9					0	0	0	0
FAM47C	442444	broad.mit.edu	37	X	37028613	37028613	+	Silent	SNP	G	C	C			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chrX:37028613G>C	uc004ddl.1	+	1	2144	c.2130G>C	c.(2128-2130)CGG>CGC	p.R710R		NM_001013736	NP_001013758	Q5HY64	FA47C_HUMAN	hypothetical protein LOC442444	710										ovary(3)	3						CCAAGACTCGGGTGTCCAGTC	0.637													38	22					0	0	0	0
USP9X	8239	broad.mit.edu	37	X	41026734	41026734	+	Splice_Site	SNP	G	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chrX:41026734G>A	uc004dfb.2	+	17	2962	c.2329_splice	c.e17-1	p.V777_splice	USP9X_uc004dfc.2_Splice_Site_p.V777_splice	NM_001039590	NP_001034679	Q93008	USP9X_HUMAN	ubiquitin specific protease 9, X-linked isoform						BMP signaling pathway|cell division|chromosome segregation|female gamete generation|mitosis|protein deubiquitination|transforming growth factor beta receptor signaling pathway|ubiquitin-dependent protein catabolic process	cytoplasm	co-SMAD binding|cysteine-type endopeptidase activity|ubiquitin thiolesterase activity			lung(3)|breast(2)|ovary(1)	6						TTTGAAACCAGGTCGTGATTC	0.353													16	8					0	0	0	0
GATA1	2623	broad.mit.edu	37	X	48649532	48649532	+	Missense_Mutation	SNP	C	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chrX:48649532C>A	uc004dkq.3	+	2	107	c.16C>A	c.(16-18)CTG>ATG	p.L6M		NM_002049	NP_002040	P15976	GATA1_HUMAN	GATA binding protein 1	6					basophil differentiation|eosinophil differentiation|erythrocyte development|megakaryocyte differentiation|platelet aggregation|platelet formation|positive regulation of anti-apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|regulation of glycoprotein biosynthetic process|transcription from RNA polymerase II promoter	nuclear membrane|nucleolus|nucleoplasm	C2H2 zinc finger domain binding|RNA polymerase II regulatory region sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding	p.M1fs(7)|p.E2fs*444(1)		haematopoietic_and_lymphoid_tissue(246)|lung(2)	248						GTTCCCTGGCCTGGGGTCCCT	0.567			Mis|F		megakaryoblastic leukemia of Downs Syndrome								10	8					1.08611e-07	1.18167e-07	1	0
FGD1	2245	broad.mit.edu	37	X	54475346	54475346	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chrX:54475346G>A	uc004dtg.2	-	16	3063	c.2329C>T	c.(2329-2331)CGC>TGC	p.R777C	FGD1_uc011moi.1_3'UTR	NM_004463	NP_004454	P98174	FGD1_HUMAN	faciogenital dysplasia protein	777	FYVE-type.				actin cytoskeleton organization|apoptosis|filopodium assembly|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|organ morphogenesis|regulation of Cdc42 GTPase activity|regulation of cell shape|small GTPase mediated signal transduction	cytoskeleton|cytosol|Golgi apparatus|lamellipodium|nucleus|plasma membrane|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(3)|skin(2)|central_nervous_system(1)	6						CGGTTGGAGCGGTTGTTGTCA	0.622													22	10					0	0	0	0
FOXR2	139628	broad.mit.edu	37	X	55650163	55650163	+	Missense_Mutation	SNP	G	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chrX:55650163G>T	uc004duo.2	+	1	331	c.19G>T	c.(19-21)GAC>TAC	p.D7Y		NM_198451	NP_940853	Q6PJQ5	FOXR2_HUMAN	forkhead box R2	7					embryo development|organ development|pattern specification process|regulation of sequence-specific DNA binding transcription factor activity|tissue development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			lung(2)|central_nervous_system(1)	3						AAAACTAAAAGACTGTGAATT	0.458													35	12					4.62619e-21	5.92292e-21	1	0
AR	367	broad.mit.edu	37	X	66905881	66905881	+	Missense_Mutation	SNP	A	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chrX:66905881A>T	uc004dwu.1	+	3	2913	c.1798A>T	c.(1798-1800)AAT>TAT	p.N600Y	AR_uc011mpd.1_Missense_Mutation_p.N600Y|AR_uc011mpe.1_RNA|AR_uc011mpf.1_Missense_Mutation_p.N600Y|AR_uc004dwv.1_Missense_Mutation_p.N68Y	NM_000044	NP_000035	P10275	ANDR_HUMAN	androgen receptor isoform 1	599	NR C4-type.|Interaction with HIPK3 (By similarity).|Nuclear receptor.				cell death|cell growth|cell proliferation|cell-cell signaling|negative regulation of apoptosis|negative regulation of integrin biosynthetic process|positive regulation of cell proliferation|positive regulation of integrin biosynthetic process|positive regulation of NF-kappaB transcription factor activity|positive regulation of phosphorylation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase III promoter|regulation of establishment of protein localization in plasma membrane|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|transport	cytoplasm|nuclear chromatin|nucleoplasm	androgen binding|androgen receptor activity|beta-catenin binding|enzyme binding|ligand-regulated transcription factor activity|protein dimerization activity|sequence-specific DNA binding transcription factor activity|transcription factor binding|transcription regulatory region DNA binding|zinc ion binding			ovary(3)|lung(2)|breast(2)|central_nervous_system(1)	8	all_cancers(1;0.173)|Prostate(1;2.27e-16)|all_epithelial(1;0.102)	all_lung(315;1.3e-11)			Bicalutamide(DB01128)|Cyproterone(DB04839)|Dromostanolone(DB00858)|Finasteride(DB01216)|Fluoxymesterone(DB01185)|Flutamide(DB00499)|Nandrolone(DB00984)|Nilutamide(DB00665)|Oxandrolone(DB00621)|Testosterone(DB00624)	CGCCAGCAGAAATGATTGCAC	0.403									Androgen_Insensitivity_Syndrome				32	7					0	0	0	0
EDA	1896	broad.mit.edu	37	X	68836326	68836326	+	Missense_Mutation	SNP	G	C	C			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chrX:68836326G>C	uc004dxs.2	+	1	416	c.174G>C	c.(172-174)TTG>TTC	p.L58F	EDA_uc004dxr.2_Missense_Mutation_p.L58F|EDA_uc011mpj.1_Missense_Mutation_p.L58F|EDA_uc004dxn.1_Missense_Mutation_p.L58F|EDA_uc004dxm.1_Missense_Mutation_p.L58F|EDA_uc004dxp.1_Missense_Mutation_p.L58F|EDA_uc004dxq.1_Missense_Mutation_p.L58F|EDA_uc004dxl.1_Missense_Mutation_p.L58F	NM_001399	NP_001390	Q92838	EDA_HUMAN	ectodysplasin A isoform EDA-A1	58	Helical; Signal-anchor for type II membrane protein; (Potential).				cell differentiation|ectoderm development|immune response|positive regulation of NF-kappaB transcription factor activity|signal transduction	collagen|cytoskeleton|membrane fraction	tumor necrosis factor receptor binding			ovary(2)|large_intestine(1)	3						TGCTGACGTTGTGCTGCTACC	0.692													45	12					0	0	0	0
ABCB7	22	broad.mit.edu	37	X	74289143	74289143	+	Silent	SNP	T	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chrX:74289143T>A	uc004eca.2	-	11	1537	c.1512A>T	c.(1510-1512)GTA>GTT	p.V504V	ABCB7_uc004ebz.2_Silent_p.V505V|ABCB7_uc011mqn.1_Silent_p.V478V|ABCB7_uc010nls.2_Silent_p.V465V|ABCB7_uc010nlt.2_Silent_p.V464V	NM_004299	NP_004290	O75027	ABCB7_HUMAN	ATP-binding cassette, sub-family B, member 7	504	ABC transporter.				cellular iron ion homeostasis	integral to membrane|mitochondrial inner membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances|heme transporter activity			ovary(1)	1						CACTACCTCCTACAATGGCCA	0.378													66	31					0	0	0	0
KLHL4	56062	broad.mit.edu	37	X	86919784	86919784	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chrX:86919784C>A	uc004efb.2	+	10	2128	c.1946C>A	c.(1945-1947)TCA>TAA	p.S649*	KLHL4_uc004efa.2_Nonsense_Mutation_p.S649*	NM_019117	NP_061990	Q9C0H6	KLHL4_HUMAN	kelch-like 4 isoform 1	649	Kelch 5.					cytoplasm|microtubule cytoskeleton|nucleolus	actin binding			ovary(2)|lung(1)|breast(1)|central_nervous_system(1)	5						AAAGGTGATTCATGGTCAACT	0.408													19	13					2.39556e-15	2.91259e-15	1	0
PABPC5	140886	broad.mit.edu	37	X	90690749	90690749	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chrX:90690749C>T	uc004efg.2	+	2	613	c.173C>T	c.(172-174)CCC>CTC	p.P58L	PABPC5_uc004eff.1_Intron	NM_080832	NP_543022	Q96DU9	PABP5_HUMAN	poly(A) binding protein, cytoplasmic 5	58	RRM 1.					cytoplasm	nucleotide binding|RNA binding			ovary(1)|lung(1)|pancreas(1)	3						ACCCGCAGCCCCCTGGGCTAT	0.532													13	7					0	0	0	0
Unknown	0	broad.mit.edu	37	X	100143140	100143140	+	RNA	SNP	C	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chrX:100143140C>A	uc010nnf.2	-	1		c.478G>T			uc004egm.2_RNA					full-length cDNA clone CS0DA010YB10 of Neuroblastoma of Homo sapiens (human).																		GTTACAAAGGCAAAGCCCCTT	0.408													20	7					1.9806e-07	2.14565e-07	1	0
GUCY2F	2986	broad.mit.edu	37	X	108696910	108696910	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chrX:108696910G>A	uc004eod.3	-	4	1487	c.1211C>T	c.(1210-1212)TCA>TTA	p.S404L	GUCY2F_uc011msq.1_RNA	NM_001522	NP_001513	P51841	GUC2F_HUMAN	guanylate cyclase 2F precursor	404	Extracellular (Potential).				intracellular signal transduction|receptor guanylyl cyclase signaling pathway|visual perception	integral to plasma membrane|nuclear outer membrane	ATP binding|GTP binding|guanylate cyclase activity|protein kinase activity|receptor activity			lung(4)|breast(3)|central_nervous_system(1)	8						TACATATTCTGAAATTCCATT	0.478													106	9					0	0	0	0
ZIC3	7547	broad.mit.edu	37	X	136649543	136649543	+	Silent	SNP	G	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chrX:136649543G>T	uc004fak.2	+	1	1198	c.693G>T	c.(691-693)GCG>GCT	p.A231A		NM_003413	NP_003404	O60481	ZIC3_HUMAN	zinc finger protein of the cerebellum 3	231					cell differentiation|positive regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|breast(1)	3	Acute lymphoblastic leukemia(192;0.000127)					TGAACGTGGCGGCCCACCACG	0.647													26	16					7.24521e-05	7.51191e-05	1	0
F9	2158	broad.mit.edu	37	X	138643014	138643014	+	Missense_Mutation	SNP	G	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chrX:138643014G>T	uc004fas.1	+	7	867	c.838G>T	c.(838-840)GGT>TGT	p.G280C	F9_uc004fat.1_Missense_Mutation_p.G242C	NM_000133	NP_000124	P00740	FA9_HUMAN	coagulation factor IX preproprotein	280	Peptidase S1.				blood coagulation, extrinsic pathway|blood coagulation, intrinsic pathway|peptidyl-glutamic acid carboxylation|post-translational protein modification|proteolysis	endoplasmic reticulum lumen|extracellular region|Golgi lumen|plasma membrane	calcium ion binding|serine-type endopeptidase activity			lung(2)|ovary(1)	3	Acute lymphoblastic leukemia(192;0.000127)				Antihemophilic Factor(DB00025)|Coagulation Factor IX(DB00100)|Heparin(DB01109)|Menadione(DB00170)	AGTTGTCGCAGGTAAATACAC	0.343													51	11					2.17126e-26	2.85929e-26	1	0
PRRG3	79057	broad.mit.edu	37	X	150869334	150869334	+	Silent	SNP	C	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chrX:150869334C>A	uc004few.1	+	4	915	c.525C>A	c.(523-525)CTC>CTA	p.L175L		NM_024082	NP_076987	Q9BZD7	TMG3_HUMAN	proline rich Gla (G-carboxyglutamic acid) 3	175	Cytoplasmic (Potential).					extracellular region|integral to membrane	calcium ion binding			ovary(3)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					AGAGCACCCTCTACCTCCCTG	0.672													22	16					1.85244e-09	2.05512e-09	1	0
PTCH2	8643	broad.mit.edu	37	1	45307563	45307563	+	Frame_Shift_Del	DEL	C	-	-			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr1:45307563delC	uc010olf.1	-	2	233	c.221delG	c.(220-222)CGCfs	p.R74fs	PTCH2_uc010olg.1_5'UTR	NM_003738	NP_003729	Q9Y6C5	PTC2_HUMAN	patched 2	74	Helical; (Potential).				protein complex assembly|spermatogenesis	integral to plasma membrane	hedgehog receptor activity			lung(6)|breast(6)|central_nervous_system(3)|skin(2)|ovary(1)	18	Acute lymphoblastic leukemia(166;0.155)					AATGGCCATGCGGAGACCTAA	0.537									Basal_Cell_Nevus_syndrome				---	---	---							
JAK1	3716	broad.mit.edu	37	1	65316496	65316497	+	Frame_Shift_Del	DEL	AT	-	-			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr1:65316496_65316497delAT	uc001dbu.1	-	12	1994_1995	c.1745_1746delAT	c.(1744-1746)GATfs	p.D582fs	JAK1_uc009wam.1_Frame_Shift_Del_p.D570fs	NM_002227	NP_002218	P23458	JAK1_HUMAN	janus kinase 1	582					interferon-gamma-mediated signaling pathway|regulation of interferon-gamma-mediated signaling pathway|regulation of type I interferon-mediated signaling pathway|response to antibiotic|type I interferon-mediated signaling pathway	cytoskeleton|cytosol|endomembrane system|membrane|nucleus	ATP binding|growth hormone receptor binding|non-membrane spanning protein tyrosine kinase activity			haematopoietic_and_lymphoid_tissue(34)|prostate(7)|soft_tissue(6)|lung(4)|breast(3)|central_nervous_system(2)|liver(2)|large_intestine(1)|stomach(1)|ovary(1)	61				BRCA - Breast invasive adenocarcinoma(111;0.0485)		CCTGCACCAGATCCTTCTTGAG	0.589			Mis		ALL								---	---	---							
Unknown	0	broad.mit.edu	37	1	194073624	194073626	+	IGR	DEL	GCA	-	-	rs113697132		TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr1:194073624_194073626delGCA								CDC73 (849684 upstream) : None (None downstream)																							tcctcttcttgcagcagcagcag	0.000													---	---	---							
CRB1	23418	broad.mit.edu	37	1	197390841	197390841	+	Frame_Shift_Del	DEL	T	-	-			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr1:197390841delT	uc001gtz.2	+	6	2018	c.1883delT	c.(1882-1884)CTTfs	p.L628fs	CRB1_uc010poz.1_Frame_Shift_Del_p.L559fs|CRB1_uc010ppa.1_Intron|CRB1_uc009wza.2_Frame_Shift_Del_p.L516fs|CRB1_uc010ppb.1_Frame_Shift_Del_p.L628fs|CRB1_uc010ppc.1_Intron|CRB1_uc010ppd.1_Frame_Shift_Del_p.L109fs|CRB1_uc001gub.1_Frame_Shift_Del_p.L277fs	NM_201253	NP_957705	P82279	CRUM1_HUMAN	crumbs homolog 1 precursor	628	Extracellular (Potential).|Laminin G-like 1.				cell-cell signaling|establishment or maintenance of cell polarity	apical plasma membrane|extracellular region|integral to membrane	calcium ion binding|protein binding			ovary(5)|skin(3)|large_intestine(1)	9						GTTGCTCTGCTTAACTTCTAT	0.428													---	---	---							
RGS7	6000	broad.mit.edu	37	1	241031928	241031929	+	Frame_Shift_Ins	INS	-	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr1:241031928_241031929insA	uc001hyv.2	-	9	897_898	c.567_568insT	c.(565-570)CTTGACfs	p.L189fs	RGS7_uc010pyh.1_Frame_Shift_Ins_p.L163fs|RGS7_uc010pyj.1_Frame_Shift_Ins_p.L105fs|RGS7_uc001hyu.2_Frame_Shift_Ins_p.L189fs|RGS7_uc009xgn.1_Frame_Shift_Ins_p.L136fs|RGS7_uc001hyw.2_Frame_Shift_Ins_p.L189fs|RGS7_uc001hyt.2_Frame_Shift_Ins_p.L21fs	NM_002924	NP_002915	P49802	RGS7_HUMAN	regulator of G-protein signaling 7	189_190					G-protein coupled receptor protein signaling pathway|intracellular signal transduction|negative regulation of signal transduction|regulation of G-protein coupled receptor protein signaling pathway	cytoplasm|heterotrimeric G-protein complex	GTPase activator activity|protein binding|signal transducer activity			ovary(4)|skin(2)|kidney(1)	7		all_cancers(173;0.0131)	OV - Ovarian serous cystadenocarcinoma(106;0.027)			TCTTGGCTGTCAAGGATCTTCC	0.465													---	---	---							
OR2M2	391194	broad.mit.edu	37	1	248343571	248343571	+	Frame_Shift_Del	DEL	C	-	-			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr1:248343571delC	uc010pzf.1	+	1	284	c.284delC	c.(283-285)GCTfs	p.A95fs		NM_001004688	NP_001004688	Q96R28	OR2M2_HUMAN	olfactory receptor, family 2, subfamily M,	95	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|skin(1)	4	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0245)			ATTTCTATGGCTGGTTGTGTC	0.463													---	---	---							
Unknown	0	broad.mit.edu	37	10	2140490	2140491	+	IGR	INS	-	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr10:2140490_2140491insA								ADARB2 (360772 upstream) : PFKP (969261 downstream)																							GGATTGCACGTAGGAGCTCTTT	0.361													---	---	---							
HPS1	3257	broad.mit.edu	37	10	100189563	100189563	+	Frame_Shift_Del	DEL	C	-	-			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr10:100189563delC	uc010qpf.1	-	9	1098	c.852delG	c.(850-852)GGGfs	p.G284fs	HPS1_uc001kpi.1_Frame_Shift_Del_p.G284fs|HPS1_uc001kpj.1_Intron|HPS1_uc001kpk.1_Intron|HPS1_uc009xwb.2_Intron|HPS1_uc010qph.1_Frame_Shift_Del_p.G284fs|HPS1_uc001kpl.2_Frame_Shift_Del_p.G284fs	NM_000195	NP_000186	Q92902	HPS1_HUMAN	Hermansky-Pudlak syndrome 1 protein isoform a	284					lysosome organization|response to stimulus|visual perception	cytoplasmic membrane-bounded vesicle|integral to plasma membrane|lysosome|membrane fraction|soluble fraction	protein dimerization activity			skin(1)	1		Colorectal(252;0.234)		Epithelial(162;3.87e-12)|all cancers(201;5.63e-10)		CTGCAGAGCTCCCCCCAGTTG	0.692									Hermansky-Pudlak_syndrome				---	---	---							
Unknown	0	broad.mit.edu	37	10	130262669	130262669	+	IGR	DEL	A	-	-			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr10:130262669delA								MKI67 (338201 upstream) : None (None downstream)																							ctcctcctccaccatcctccc	0.109													---	---	---							
WNK1	65125	broad.mit.edu	37	12	1005419	1005420	+	Frame_Shift_Del	DEL	AG	-	-			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr12:1005419_1005420delAG	uc001qio.3	+	24	6273_6274	c.5766_5767delAG	c.(5764-5769)CCAGAGfs	p.P1922fs	WNK1_uc001qip.3_Frame_Shift_Del_p.P1674fs|WNK1_uc001qir.3_Frame_Shift_Del_p.P1095fs	NM_018979	NP_061852	Q9H4A3	WNK1_HUMAN	WNK lysine deficient protein kinase 1	1922_1923					intracellular protein kinase cascade|ion transport|neuron development	cytoplasm	ATP binding|protein binding|protein kinase inhibitor activity|protein serine/threonine kinase activity			stomach(6)|breast(6)|ovary(5)|lung(4)|large_intestine(1)|central_nervous_system(1)	23	all_cancers(10;0.00611)|all_epithelial(11;0.00825)|all_lung(10;0.0331)|Ovarian(42;0.0512)|Lung NSC(10;0.0632)		Epithelial(1;1.74e-08)|all cancers(1;7.04e-08)|OV - Ovarian serous cystadenocarcinoma(31;0.000423)|BRCA - Breast invasive adenocarcinoma(9;0.0149)|Colorectal(1;0.0197)			CAGATGTGCCAGAGAGTGCCCA	0.505													---	---	---							
EMG1	10436	broad.mit.edu	37	12	7080212	7080213	+	Splice_Site	INS	-	C	C	rs17857448		TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr12:7080212_7080213insC	uc001qsh.3	+	2	272	c.129_splice	c.e2+1	p.L43_splice	PHB2_uc001qsd.2_5'Flank|PHB2_uc010sft.1_5'Flank|PHB2_uc010sfu.1_5'Flank|EMG1_uc009zfo.2_RNA|EMG1_uc010sfv.1_RNA	NM_006331	NP_006322	Q92979	NEP1_HUMAN	ribosome biogenesis protein NEP1						ribosomal small subunit biogenesis	cytoplasm|nucleolus	rRNA (pseudouridine) methyltransferase activity|rRNA binding				0						GAGGCCGTAGTTTATTGTGGTG	0.569													---	---	---							
PRB1	5542	broad.mit.edu	37	12	11506214	11506214	+	Frame_Shift_Del	DEL	G	-	-			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr12:11506214delG	uc001qzw.1	-	4	860	c.823delC	c.(823-825)CGAfs	p.R275fs	PRB1_uc001qzu.1_Frame_Shift_Del_p.R142fs|PRB1_uc001qzv.1_Frame_Shift_Del_p.R122fs	NM_005039	NP_005030	P04280	PRP1_HUMAN	proline-rich protein BstNI subfamily 1 isoform 1	336	15 X 20 AA approximate tandem repeats of P-P-G-K-P-Q-G-P-P-[PAQ]-Q-[GE]-[GD]- [NKS]-[KSQRN]-[PRQS]-[QS] [GPS]-[PQAR]- [PSR].|14.					extracellular region					0			OV - Ovarian serous cystadenocarcinoma(49;0.185)			GGAGGAGATCGGGCACTTTGG	0.607													---	---	---							
PRB2	653247	broad.mit.edu	37	12	11546856	11546858	+	In_Frame_Del	DEL	AGA	-	-			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr12:11546856_11546858delAGA	uc010shk.1	-	3	189_191	c.154_156delTCT	c.(154-156)TCTdel	p.S52del		NM_006248	NP_006239			proline-rich protein BstNI subfamily 2												0		all_cancers(2;0.00558)|Acute lymphoblastic leukemia(2;3.94e-11)|all_hematologic(2;3.6e-09)	OV - Ovarian serous cystadenocarcinoma(49;0.185)			TTCCTGGAGGAGATGGGGGACCT	0.557													---	---	---							
Unknown	0	broad.mit.edu	37	12	32101808	32101808	+	IGR	DEL	A	-	-			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr12:32101808delA								H3F3C (156633 upstream) : C12orf35 (10545 downstream)																							TGACAACTAGAAAAAAAAAAA	0.194													---	---	---							
MLL2	8085	broad.mit.edu	37	12	49421894	49421894	+	Frame_Shift_Del	DEL	C	-	-			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr12:49421894delC	uc001rta.3	-	46	14413	c.14413delG	c.(14413-14415)GAGfs	p.E4805fs		NM_003482	NP_003473	O14686	MLL2_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 2	4805					chromatin silencing|histone H3-K4 methylation|oocyte growth|positive regulation of cell proliferation|positive regulation of estrogen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|response to estrogen stimulus|transcription, DNA-dependent	histone methyltransferase complex	histone-lysine N-methyltransferase activity|protein binding|transcription regulatory region DNA binding|zinc ion binding			kidney(16)|central_nervous_system(12)|lung(4)|skin(4)|ovary(3)|pancreas(2)	41						CTCAGCAGCTCCGCCACTGCC	0.592			N|F|Mis		medulloblastoma|renal					HNSCC(34;0.089)			---	---	---							
KRT80	144501	broad.mit.edu	37	12	52566834	52566835	+	Frame_Shift_Del	DEL	AG	-	-			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr12:52566834_52566835delAG	uc001rzx.2	-	6	1042_1043	c.944_945delCT	c.(943-945)TCTfs	p.S315fs	KRT80_uc001rzw.2_Frame_Shift_Del_p.S350fs|KRT80_uc001rzy.2_Frame_Shift_Del_p.S315fs	NM_182507	NP_872313	Q6KB66	K2C80_HUMAN	keratin 80 isoform a	315	Rod.|Coil 2.					keratin filament	structural molecule activity				0				BRCA - Breast invasive adenocarcinoma(357;0.108)		GGCTCTTGACAGAGAGGATCTG	0.609													---	---	---							
ESYT1	23344	broad.mit.edu	37	12	56522379	56522379	+	Frame_Shift_Del	DEL	C	-	-			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr12:56522379delC	uc001sjq.2	+	1	326	c.276delC	c.(274-276)CGCfs	p.R92fs	ESYT1_uc001sjr.2_Frame_Shift_Del_p.R92fs	NM_015292	NP_056107	Q9BSJ8	ESYT1_HUMAN	extended synaptotagmin-like protein 1	92	Potential.					integral to membrane				ovary(4)|skin(1)	5						TGGGCTGGCGCCGGGTCCGCG	0.617													---	---	---							
GALNT4	8693	broad.mit.edu	37	12	89919631	89919632	+	5'Flank	DEL	CC	-	-	rs67346689		TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr12:89919631_89919632delCC	uc001tbd.2	-						POC1B_uc001tba.2_5'Flank|POC1B_uc001tbb.2_5'Flank|POC1B_uc001tbc.2_Intron|POC1B_uc010sun.1_Intron|GALNT4_uc001tbe.2_Intron|GALNT4_uc010suo.1_Intron	NM_003774	NP_003765	Q8N4A0	GALT4_HUMAN	polypeptide N-acetylgalactosaminyltransferase 4						carbohydrate metabolic process	Golgi membrane|integral to membrane|perinuclear region of cytoplasm	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding				0						CAGGGAGGGACCCCCCCCACCT	0.668													---	---	---							
C12orf63	374467	broad.mit.edu	37	12	97147651	97147651	+	Frame_Shift_Del	DEL	G	-	-			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr12:97147651delG	uc001tet.1	+	23	3168	c.3090delG	c.(3088-3090)GTGfs	p.V1030fs		NM_198520	NP_940922	Q6ZTY8	CL063_HUMAN	hypothetical protein LOC374467	1030										skin(6)|ovary(1)	7						AACATGAGGTGGAAGCTGAAA	0.403													---	---	---							
MTMR6	9107	broad.mit.edu	37	13	25840354	25840354	+	Frame_Shift_Del	DEL	C	-	-			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr13:25840354delC	uc001uqf.3	-	4	694	c.375delG	c.(373-375)TGGfs	p.W125fs	MTMR6_uc001uqe.1_Frame_Shift_Del_p.W125fs	NM_004685	NP_004676	Q9Y217	MTMR6_HUMAN	myotubularin related protein 6	125	Myotubularin phosphatase.			W -> R (in Ref. 4; CAD89918).		cytoplasm|nuclear envelope	calcium-activated potassium channel activity|protein serine/threonine phosphatase activity|protein tyrosine phosphatase activity			ovary(2)|skin(2)	4		Lung SC(185;0.0225)|Breast(139;0.0351)		all cancers(112;0.00927)|Epithelial(112;0.0474)|OV - Ovarian serous cystadenocarcinoma(117;0.164)		CAATGAGCTGCCAGCCTTGTA	0.393													---	---	---							
SNORD115-9	100033446	broad.mit.edu	37	15	25436459	25436459	+	5'Flank	DEL	G	-	-			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr15:25436459delG	uc001yzg.1	+						SNORD115-13_uc001yzf.1_RNA|SNORD115-13_uc001yzh.2_5'Flank	NR_003297				Homo sapiens small nucleolar RNA, C/D box 115-5 (SNORD115-5), non-coding RNA.												0						CTGAAGCTCAGGCCCTTCCTG	0.642													---	---	---							
SHC4	399694	broad.mit.edu	37	15	49143384	49143384	+	Splice_Site	DEL	C	-	-			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr15:49143384delC	uc001zxb.1	-	9	1732	c.1303_splice	c.e9+1	p.G435_splice	SHC4_uc010uey.1_Splice_Site_p.G192_splice|SHC4_uc010uez.1_Splice_Site_p.G149_splice	NM_203349	NP_976224	Q6S5L8	SHC4_HUMAN	rai-like protein						intracellular signal transduction	cell junction|postsynaptic membrane				ovary(3)|pancreas(2)	5		all_lung(180;0.00466)		all cancers(107;9.4e-08)|GBM - Glioblastoma multiforme(94;5.94e-07)		ATTGTACCTACCTATTGCCCT	0.413													---	---	---							
TNFRSF13B	23495	broad.mit.edu	37	17	16843706	16843708	+	In_Frame_Del	DEL	TCT	-	-	rs74811083	byFrequency	TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr17:16843706_16843708delTCT	uc002gqs.1	-	4	576_578	c.563_565delAGA	c.(562-567)AAGAGG>AGG	p.K188del	TNFRSF13B_uc010vwt.1_RNA|TNFRSF13B_uc002gqt.1_In_Frame_Del_p.K142del	NM_012452	NP_036584	O14836	TR13B_HUMAN	tumor necrosis factor receptor 13B	188	Cytoplasmic (Potential).				cell surface receptor linked signaling pathway	integral to plasma membrane	protein binding|receptor activity			kidney(2)	2						GGATCCCCCCTCTTCTTGAGGAA	0.645									IgA_Deficiency_Selective				---	---	---							
KRTAP4-1	85285	broad.mit.edu	37	17	39340796	39340852	+	Splice_Site	DEL	CGGCAGCAGCTGGACATACCACAGCTGGGGTGGCAGGTGGTCTGACAGCAGAGTGGG	-	-	rs71155126	by1000genomes	TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr17:39340796_39340852delCGGCAGCAGCTGGACATACCACAGCTGGGGTGGCAGGTGGTCTGACAGCAGAGTGGG	uc002hwe.3	-	2	287	c.246_splice	c.e2-1	p.S82_splice		NM_033060	NP_149049	Q9BYQ7	KRA41_HUMAN	keratin associated protein 4-1							keratin filament					0		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(17;0.000449)			ACAGAGTGGACGGCAGCAGCTGGACATACCACAGCTGGGGTGGCAGGTGGTCTGACAGCAGAGTGGGCGGCAGCAGC	0.646													---	---	---							
C17orf57	124989	broad.mit.edu	37	17	45456566	45456567	+	Frame_Shift_Ins	INS	-	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr17:45456566_45456567insA	uc002iln.2	+	14	1940_1941	c.1529_1530insA	c.(1528-1530)TTAfs	p.L510fs	C17orf57_uc002ilm.2_Frame_Shift_Ins_p.L414fs|C17orf57_uc010daz.1_Frame_Shift_Ins_p.L462fs	NM_152347	NP_689560	Q8IY85	CQ057_HUMAN	hypothetical protein LOC124989	510	EF-hand 1.						calcium ion binding			breast(1)|central_nervous_system(1)|skin(1)	3						ATGGTGGAGTTAGATGACTTTG	0.277													---	---	---							
GRIN3B	116444	broad.mit.edu	37	19	1009186	1009188	+	In_Frame_Del	DEL	AGC	-	-			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr19:1009186_1009188delAGC	uc002lqo.1	+	9	2717_2719	c.2717_2719delAGC	c.(2716-2721)GAGCAG>GAG	p.Q912del	uc002lqp.1_RNA	NM_138690	NP_619635	O60391	NMD3B_HUMAN	glutamate receptor, ionotropic,	912	Cytoplasmic (Potential).				ionotropic glutamate receptor signaling pathway|protein insertion into membrane|regulation of calcium ion transport	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|neuronal cell body|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|glycine binding|ionotropic glutamate receptor activity|neurotransmitter receptor activity				0		Acute lymphoblastic leukemia(61;4.36e-14)|all_hematologic(61;4.84e-09)|Lung NSC(49;0.000226)|all_lung(49;0.000353)|Breast(49;0.00066)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)	Glycine(DB00145)|L-Glutamic Acid(DB00142)|Orphenadrine(DB01173)	CCCGAGGTGGagcagcagcagca	0.680													---	---	---							
MAP4K3	8491	broad.mit.edu	37	2	39499427	39499427	+	Frame_Shift_Del	DEL	G	-	-			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr2:39499427delG	uc002rro.2	-	26	2061	c.1970delC	c.(1969-1971)CCAfs	p.P657fs	MAP4K3_uc002rrp.2_Frame_Shift_Del_p.P636fs|MAP4K3_uc010yns.1_Frame_Shift_Del_p.P210fs	NM_003618	NP_003609	Q8IVH8	M4K3_HUMAN	mitogen-activated protein kinase kinase kinase	657	CNH.				JNK cascade		ATP binding|protein binding|protein serine/threonine kinase activity|small GTPase regulator activity			ovary(3)|lung(3)|stomach(1)|pancreas(1)	8		all_hematologic(82;0.211)				CCCTTACCTTGGCAGTATTCT	0.358													---	---	---							
Unknown	0	broad.mit.edu	37	2	148081645	148081646	+	IGR	INS	-	A	A	rs76356018		TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr2:148081645_148081646insA								PABPC1P2 (733088 upstream) : ACVR2A (520440 downstream)																							catctgacctgaaaaaaaaaac	0.000													---	---	---							
Unknown	0	broad.mit.edu	37	21	14898958	14898959	+	IGR	INS	-	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr21:14898958_14898959insA								C21orf99 (408389 upstream) : POTED (83539 downstream)																							TGGAATGTCTGAAAAAAAAAAA	0.485													---	---	---							
CECR2	27443	broad.mit.edu	37	22	18022443	18022444	+	Frame_Shift_Ins	INS	-	G	G			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr22:18022443_18022444insG	uc010gqw.1	+	15	2671_2672	c.2545_2546insG	c.(2545-2547)CGGfs	p.R849fs	CECR2_uc010gqv.1_Frame_Shift_Ins_p.R708fs|CECR2_uc002zml.2_Frame_Shift_Ins_p.R708fs	NM_031413	NP_113601	Q9BXF3	CECR2_HUMAN	cat eye syndrome chromosome region, candidate 2	891					chromatin modification|cytokinesis|cytoskeleton organization|DNA fragmentation involved in apoptotic nuclear change|vesicle-mediated transport		protein binding			ovary(1)|skin(1)	2		all_epithelial(15;0.139)		Lung(27;0.146)		CCAGGCTCTTCGGGGGGTGCAG	0.634													---	---	---							
OR5H15	403274	broad.mit.edu	37	3	97887844	97887844	+	Frame_Shift_Del	DEL	T	-	-			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr3:97887844delT	uc011bgu.1	+	1	301	c.301delT	c.(301-303)TTTfs	p.F101fs		NM_001005515	NP_001005515	A6NDH6	O5H15_HUMAN	olfactory receptor, family 5, subfamily H,	101	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						CAAGATACAATTTTTTTCCAT	0.383													---	---	---							
Unknown	0	broad.mit.edu	37	3	137599615	137599615	+	IGR	DEL	C	-	-			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr3:137599615delC								SOX14 (115219 upstream) : CLDN18 (118043 downstream)																							TGTCAGGCTACCAAAGATGCT	0.423													---	---	---							
PROM1	8842	broad.mit.edu	37	4	15995680	15995680	+	Frame_Shift_Del	DEL	T	-	-			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr4:15995680delT	uc003goo.2	-	15	1909	c.1697delA	c.(1696-1698)AATfs	p.N566fs	PROM1_uc003gor.2_Frame_Shift_Del_p.N566fs|PROM1_uc003gos.2_Frame_Shift_Del_p.N557fs|PROM1_uc003got.2_Frame_Shift_Del_p.N566fs|PROM1_uc003gou.2_Frame_Shift_Del_p.N557fs|PROM1_uc003gop.2_Frame_Shift_Del_p.N557fs|PROM1_uc003goq.3_Frame_Shift_Del_p.N557fs	NM_006017	NP_006008	O43490	PROM1_HUMAN	prominin 1 isoform 1	566	Extracellular (Potential).				camera-type eye photoreceptor cell differentiation|photoreceptor cell maintenance|retina layer formation	apical plasma membrane|cell surface|integral to plasma membrane|microvillus membrane|photoreceptor outer segment membrane|plasma membrane	beta-actinin binding|cadherin binding			ovary(3)|upper_aerodigestive_tract(1)|lung(1)|kidney(1)|central_nervous_system(1)	7						AGTGCCTCTATTTTTTTTGCA	0.428													---	---	---							
GPRIN3	285513	broad.mit.edu	37	4	90169364	90169364	+	Frame_Shift_Del	DEL	C	-	-			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr4:90169364delC	uc003hsm.1	-	2	2417	c.1898delG	c.(1897-1899)CGCfs	p.R633fs		NM_198281	NP_938022	Q6ZVF9	GRIN3_HUMAN	G protein-regulated inducer of neurite outgrowth	633										ovary(3)	3		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;5.67e-05)		GCTGGGCCTGCGTGGGCTGGC	0.572													---	---	---							
GRID2	2895	broad.mit.edu	37	4	94411878	94411878	+	Frame_Shift_Del	DEL	G	-	-			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr4:94411878delG	uc011cdt.1	+	12	2205	c.1947delG	c.(1945-1947)ACGfs	p.T649fs	GRID2_uc011cdu.1_Frame_Shift_Del_p.T554fs	NM_001510	NP_001501	O43424	GRID2_HUMAN	glutamate receptor, ionotropic, delta 2	649	Helical; (Potential).				glutamate signaling pathway	cell junction|integral to plasma membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)	6		Hepatocellular(203;0.114)|all_hematologic(202;0.177)		OV - Ovarian serous cystadenocarcinoma(123;3.22e-06)|LUSC - Lung squamous cell carcinoma(81;0.185)|Lung(65;0.191)	L-Glutamic Acid(DB00142)	CATCTTACACGGCAAACCTCG	0.438													---	---	---							
Unknown	0	broad.mit.edu	37	4	111321027	111321027	+	IGR	DEL	G	-	-			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr4:111321027delG								ELOVL6 (201207 upstream) : ENPEP (76202 downstream)																							GTAGCATGATGGGCCACTGAG	0.512													---	---	---							
MAST4	375449	broad.mit.edu	37	5	66459668	66459668	+	Frame_Shift_Del	DEL	C	-	-			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr5:66459668delC	uc003jut.1	+	28	4162	c.4094delC	c.(4093-4095)TCCfs	p.S1365fs	MAST4_uc003juw.2_Frame_Shift_Del_p.S1293fs|MAST4_uc003jux.2_5'Flank	NM_015183	NP_055998	O15021	MAST4_HUMAN	microtubule associated serine/threonine kinase	1557						cytoplasm	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			lung(6)|ovary(2)|kidney(2)|breast(2)|central_nervous_system(1)	13		Lung NSC(167;8.56e-06)|Prostate(74;0.00637)|Ovarian(174;0.0563)|Breast(144;0.0586)|Colorectal(97;0.245)		Lung(70;0.011)		CACCAGAAATCCCATGGACCC	0.507													---	---	---							
MSH3	4437	broad.mit.edu	37	5	79950742	79950750	+	In_Frame_Del	DEL	CCCCCAGCT	-	-	rs3045983		TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr5:79950742_79950750delCCCCCAGCT	uc003kgz.2	+	1	449_457	c.196_204delCCCCCAGCT	c.(196-204)CCCCCAGCTdel	p.PPA66del	DHFR_uc011ctl.1_5'Flank|DHFR_uc011ctm.1_5'Flank|DHFR_uc010jap.1_5'Flank|DHFR_uc003kgx.1_In_Frame_Del_p.11_14GAGG>G|DHFR_uc003kgy.1_5'UTR	NM_002439	NP_002430	P20585	MSH3_HUMAN	mutS homolog 3	66_68					maintenance of DNA repeat elements|meiotic mismatch repair|negative regulation of DNA recombination|positive regulation of helicase activity|reciprocal meiotic recombination|somatic recombination of immunoglobulin gene segments	MutSbeta complex|nuclear chromosome	ATP binding|DNA-dependent ATPase activity|double-strand/single-strand DNA junction binding|enzyme binding|loop DNA binding|Y-form DNA binding			lung(2)|ovary(1)|breast(1)	4		Lung NSC(167;0.00479)|all_lung(232;0.00507)|Ovarian(174;0.0261)|Breast(144;0.244)		OV - Ovarian serous cystadenocarcinoma(54;2.38e-45)|Epithelial(54;1.58e-38)|all cancers(79;4.93e-33)		gCCCCCAGCGCCCCCAGCTCCCGCCTTCC	0.598								MMR					---	---	---							
PCDHB4	56131	broad.mit.edu	37	5	140502659	140502660	+	Frame_Shift_Del	DEL	CT	-	-			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr5:140502659_140502660delCT	uc003lip.1	+	1	1079_1080	c.1079_1080delCT	c.(1078-1080)CCTfs	p.P360fs		NM_018938	NP_061761	Q9Y5E5	PCDB4_HUMAN	protocadherin beta 4 precursor	360	Cadherin 4.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	cytoplasm|integral to plasma membrane|intermediate filament cytoskeleton	calcium ion binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GAAAATGCTCCTGAGACGGTAG	0.421													---	---	---							
DSP	1832	broad.mit.edu	37	6	7542148	7542149	+	Translation_Start_Site	INS	-	A	A	rs151331814	by1000genomes	TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr6:7542148_7542149insA	uc003mxp.1	+	1					DSP_uc003mxq.1_Translation_Start_Site	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I						cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		TGCCCGCCGACATGAGCTGCAA	0.718													---	---	---							
Unknown	0	broad.mit.edu	37	6	158195269	158195270	+	IGR	INS	-	G	G	rs150472202	by1000genomes	TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr6:158195269_158195270insG								ZDHHC14 (100293 upstream) : SNX9 (49024 downstream)																							gaggtggaggagtggaggaggt	0.322													---	---	---							
C6orf120	387263	broad.mit.edu	37	6	170102778	170102784	+	Frame_Shift_Del	DEL	GATGCGG	-	-			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr6:170102778_170102784delGATGCGG	uc003qxb.2	+	1	522_528	c.223_229delGATGCGG	c.(223-231)GATGCGGATfs	p.D75fs	WDR27_uc010kkw.1_5'Flank|WDR27_uc003qwx.2_5'Flank|WDR27_uc003qwy.2_5'Flank|WDR27_uc011egw.1_5'Flank|WDR27_uc010kkx.2_5'Flank|C6orf120_uc011egx.1_Frame_Shift_Del_p.D94fs	NM_001029863	NP_001025034	Q7Z4R8	CF120_HUMAN	hypothetical protein LOC387263 precursor	75_77						extracellular region					0		Breast(66;0.000338)		OV - Ovarian serous cystadenocarcinoma(33;9.65e-22)|BRCA - Breast invasive adenocarcinoma(81;1.29e-07)|GBM - Glioblastoma multiforme(31;0.0015)		CCTCAAGGGAGATGCGGATCTGTACGT	0.652													---	---	---							
OR6V1	346517	broad.mit.edu	37	7	142750181	142750181	+	Frame_Shift_Del	DEL	C	-	-			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr7:142750181delC	uc011ksv.1	+	1	744	c.744delC	c.(742-744)ATCfs	p.I248fs		NM_001001667	NP_001001667	Q8N148	OR6V1_HUMAN	olfactory receptor, family 6, subfamily V,	248	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	Melanoma(164;0.059)					TGGTCTTCATCGGCTACAGTA	0.552													---	---	---							
SLC26A7	115111	broad.mit.edu	37	8	92378866	92378867	+	Frame_Shift_Ins	INS	-	A	A			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr8:92378866_92378867insA	uc003yex.2	+	15	1825_1826	c.1547_1548insA	c.(1546-1548)GCAfs	p.A516fs	SLC26A7_uc003yey.2_RNA|SLC26A7_uc003yez.2_Frame_Shift_Ins_p.A516fs|SLC26A7_uc003yfa.2_Frame_Shift_Ins_p.A516fs	NM_052832	NP_439897	Q8TE54	S26A7_HUMAN	solute carrier family 26, member 7 isoform a	516	STAS.|Cytoplasmic (Potential).					basolateral plasma membrane|integral to membrane|recycling endosome membrane	anion:anion antiporter activity|bicarbonate transmembrane transporter activity|chloride channel activity|oxalate transmembrane transporter activity|sulfate transmembrane transporter activity			ovary(2)	2			BRCA - Breast invasive adenocarcinoma(11;0.00802)			TTCCTGAATGCAAAAAAATTTT	0.347													---	---	---							
CSMD3	114788	broad.mit.edu	37	8	113249444	113249445	+	Frame_Shift_Ins	INS	-	T	T			TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chr8:113249444_113249445insT	uc003ynu.2	-	67	10760_10761	c.10601_10602insA	c.(10600-10602)AATfs	p.N3534fs	CSMD3_uc003yns.2_Frame_Shift_Ins_p.N2736fs|CSMD3_uc003ynt.2_Frame_Shift_Ins_p.N3494fs|CSMD3_uc011lhx.1_Frame_Shift_Ins_p.N3365fs	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	3534	Extracellular (Potential).					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						CCATGTTGCTATTGCTCAGTGT	0.366										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			---	---	---							
Unknown	0	broad.mit.edu	37	Y	13601466	13601467	+	IGR	INS	-	T	T	rs112972965		TCGA-BB-7862-01A-21D-2229-08	TCGA-BB-7862-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	84c57a23-1428-488e-9275-9f2bc3673476	5aecc517-51d9-48af-ae2a-8eb82cc47df3	g.chrY:13601466_13601467insT								None (None upstream) : None (None downstream)																							AGAGCAGGCTCTTGCCCACATC	0.490													---	---	---							
