Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
AGRN	375790	broad.mit.edu	37	1	983033	983033	+	Silent	SNP	C	T	T			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr1:983033C>T	uc001ack.1	+	21	3647	c.3597C>T	c.(3595-3597)TCC>TCT	p.S1199S		NM_198576	NP_940978	O00468	AGRIN_HUMAN	agrin precursor	1199	SEA.				axon guidance|clustering of voltage-gated sodium channels|muscarinic acetylcholine receptor signaling pathway|receptor clustering	basal lamina	laminin binding|structural constituent of cytoskeleton			central_nervous_system(2)|breast(1)	3	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		UCEC - Uterine corpus endometrioid carcinoma (11;0.00462)|Epithelial(90;5.98e-38)|OV - Ovarian serous cystadenocarcinoma(86;5.43e-23)|Colorectal(212;5.97e-05)|COAD - Colon adenocarcinoma(227;0.000201)|Kidney(185;0.0024)|BRCA - Breast invasive adenocarcinoma(365;0.00246)|STAD - Stomach adenocarcinoma(132;0.00645)|KIRC - Kidney renal clear cell carcinoma(229;0.0354)|Lung(427;0.201)		CCGGCAAATCCGTCCGCGCCA	0.617													52	70					0	0	0.139131	0	0
KIAA2013	90231	broad.mit.edu	37	1	11983339	11983339	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr1:11983339G>A	uc001atk.2	-	2	1435	c.1241C>T	c.(1240-1242)CCG>CTG	p.P414L	KIAA2013_uc001atl.1_Missense_Mutation_p.P414L	NM_138346	NP_612355	Q8IYS2	K2013_HUMAN	hypothetical protein LOC90231 precursor	414	Extracellular (Potential).					integral to membrane				ovary(1)	1	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00149)|all_lung(284;0.00189)|Breast(348;0.00586)|Colorectal(325;0.0062)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0556)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;4.88e-06)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|Kidney(185;0.000722)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		CAGCCGCCCCGGCCACAGGTT	0.642													17	26					0	0	0.062417	0	0
PRAMEF11	440560	broad.mit.edu	37	1	12885059	12885059	+	Missense_Mutation	SNP	C	G	G	rs143004725	by1000genomes	TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr1:12885059C>G	uc001auk.2	-	4	1248	c.1052G>C	c.(1051-1053)TGC>TCC	p.C351S		NM_001146344	NP_001139816	O60813	PRA11_HUMAN	PRAME family member 11	351	LRR 6.										0						GGTGGCCATGCAGATGGGATT	0.532													3	181					0	0	0.009096	0	0
CELA2A	63036	broad.mit.edu	37	1	15793996	15793996	+	Missense_Mutation	SNP	T	G	G			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr1:15793996T>G	uc001awk.2	+	7	781	c.755T>G	c.(754-756)TTC>TGC	p.F252C		NM_033440	NP_254275	P08217	CEL2A_HUMAN	elastase 2A preproprotein	252	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			ovary(2)	2						CCCTCCGTCTTCACGCGGGTC	0.622													47	63					0	0	0.139131	0	0
NBPF1	55672	broad.mit.edu	37	1	16902873	16902873	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr1:16902873G>A	uc009vos.1	-	19	2896	c.2008C>T	c.(2008-2010)CAG>TAG	p.Q670*	NBPF1_uc009vot.1_Intron|NBPF1_uc001ayz.1_Nonsense_Mutation_p.Q128*|NBPF1_uc010oce.1_Nonsense_Mutation_p.Q399*	NM_017940	NP_060410	Q3BBV0	NBPF1_HUMAN	hypothetical protein LOC55672	670	Potential.					cytoplasm					0				UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;7.52e-06)|COAD - Colon adenocarcinoma(227;1.05e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.179)		AGGAGGGCCTGGAGATGCTGA	0.547													18	596					0	0	0.124865	0	0
C1QB	713	broad.mit.edu	37	1	22987842	22987842	+	Missense_Mutation	SNP	T	C	C			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr1:22987842T>C	uc001bgd.2	+	3	857	c.725T>C	c.(724-726)TTT>TCT	p.F242S		NM_000491	NP_000482	P02746	C1QB_HUMAN	complement component 1, q subcomponent, B chain	242	C1q.				complement activation, classical pathway|innate immune response	collagen|complement component C1 complex				breast(1)	1		Colorectal(325;3.46e-05)|Lung NSC(340;6.55e-05)|all_lung(284;9.87e-05)|Renal(390;0.000219)|Breast(348;0.00262)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0227)|OV - Ovarian serous cystadenocarcinoma(117;7.06e-27)|Colorectal(126;1.58e-07)|GBM - Glioblastoma multiforme(114;6.72e-06)|COAD - Colon adenocarcinoma(152;1.13e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000551)|KIRC - Kidney renal clear cell carcinoma(1967;0.0027)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.198)	Abciximab(DB00054)|Adalimumab(DB00051)|Alefacept(DB00092)|Alemtuzumab(DB00087)|Basiliximab(DB00074)|Bevacizumab(DB00112)|Cetuximab(DB00002)|Daclizumab(DB00111)|Efalizumab(DB00095)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Natalizumab(DB00108)|Palivizumab(DB00110)|Rituximab(DB00073)|Tositumomab(DB00081)|Trastuzumab(DB00072)	AACAGCATCTTTTCCGGGTTC	0.607													75	88					0	0	0.139131	0	0
SCP2	6342	broad.mit.edu	37	1	53444004	53444004	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr1:53444004C>T	uc001cur.1	+	9	911	c.790C>T	c.(790-792)CCA>TCA	p.P264S	SCP2_uc001cus.1_RNA|SCP2_uc010ono.1_Missense_Mutation_p.P183S|SCP2_uc010onp.1_Missense_Mutation_p.P240S|SCP2_uc009vzi.1_Missense_Mutation_p.P220S|SCP2_uc001cuq.1_Missense_Mutation_p.P220S	NM_002979	NP_002970	P22307	NLTP_HUMAN	sterol carrier protein 2 isoform 1 proprotein	264					bile acid biosynthetic process|fatty acid beta-oxidation using acyl-CoA oxidase|lipid transport	mitochondrion|nucleus|peroxisomal matrix	propanoyl-CoA C-acyltransferase activity|propionyl-CoA C2-trimethyltridecanoyltransferase activity|protein binding|sterol binding			breast(1)	1						GACTGATTTGCCAAGCTCGTT	0.363													17	38					0	0	0.055883	0	0
CD53	963	broad.mit.edu	37	1	111440472	111440472	+	Silent	SNP	C	T	T			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr1:111440472C>T	uc001dzw.2	+	8	717	c.546C>T	c.(544-546)TTC>TTT	p.F182F	CD53_uc001dzx.2_Silent_p.F182F|CD53_uc010owa.1_Silent_p.F123F|CD53_uc001dzy.2_Intron	NM_001040033	NP_001035122	P19397	CD53_HUMAN	CD53 antigen	182	Helical; (Potential).				signal transduction	integral to membrane|plasma membrane					0		all_cancers(81;1.06e-05)|all_epithelial(167;1.95e-05)|all_lung(203;0.000199)|Lung NSC(277;0.000398)		Lung(183;0.0264)|Colorectal(144;0.0375)|all cancers(265;0.11)|Epithelial(280;0.114)|COAD - Colon adenocarcinoma(174;0.141)|LUSC - Lung squamous cell carcinoma(189;0.144)		ATTCCAATTTCCTGTATATCG	0.279													42	58					0	0	0.139131	0	0
SPAG17	200162	broad.mit.edu	37	1	118581996	118581996	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr1:118581996C>T	uc001ehk.2	-	23	3306	c.3238G>A	c.(3238-3240)GAA>AAA	p.E1080K		NM_206996	NP_996879	Q6Q759	SPG17_HUMAN	sperm associated antigen 17	1080						cilium|flagellar axoneme|microtubule				upper_aerodigestive_tract(2)|ovary(2)|large_intestine(1)|skin(1)	6	Esophageal squamous(2;0.0106)	all_cancers(81;0.0204)|all_lung(203;9.46e-05)|Lung NSC(69;0.000675)|all_epithelial(167;0.01)		Lung(183;0.0858)		TTCACAATTTCCTTAGGGTCA	0.383													9	27					0	0	0.047766	0	0
LINGO4	339398	broad.mit.edu	37	1	151774425	151774425	+	Silent	SNP	G	A	A			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr1:151774425G>A	uc001ezf.1	-	2	946	c.756C>T	c.(754-756)CTC>CTT	p.L252L		NM_001004432	NP_001004432	Q6UY18	LIGO4_HUMAN	leucine rich repeat and Ig domain containing 4	252	Extracellular (Potential).					integral to membrane				large_intestine(1)	1	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.14)		LUSC - Lung squamous cell carcinoma(543;0.181)			TGCTGAGATTGAGCCCAACCA	0.637													28	42					0	0	0.125774	0	0
FLG	2312	broad.mit.edu	37	1	152283903	152283903	+	Silent	SNP	G	A	A			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr1:152283903G>A	uc001ezu.1	-	3	3495	c.3459C>T	c.(3457-3459)TCC>TCT	p.S1153S	uc001ezv.2_5'Flank	NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	1153	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CTGAGTGCCTGGAGCTGTCTC	0.597									Ichthyosis				218	400					0	0	0.139131	0	0
S100A7L2	645922	broad.mit.edu	37	1	153410684	153410684	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr1:153410684G>A	uc010pdx.1	-	2	233	c.155C>T	c.(154-156)CCC>CTC	p.P52L		NM_001045479	NP_001038944			S100 calcium binding protein A7-like 2											ovary(1)	1	all_lung(78;2.4e-33)|Lung NSC(65;8.13e-32)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.171)			GAGGAAGTTGGGGAAGTTCTC	0.512													23	59					0	0	0.108266	0	0
NUP210L	91181	broad.mit.edu	37	1	154027298	154027298	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr1:154027298G>A	uc001fdw.2	-	24	3323	c.3251C>T	c.(3250-3252)CCA>CTA	p.P1084L	NUP210L_uc009woq.2_Intron|NUP210L_uc010peh.1_Missense_Mutation_p.P1084L	NM_207308	NP_997191	Q5VU65	P210L_HUMAN	nucleoporin 210kDa-like isoform 1	1084						integral to membrane				skin(5)|ovary(4)|large_intestine(1)|central_nervous_system(1)	11	all_lung(78;9.35e-31)|Lung NSC(65;1.33e-28)|Hepatocellular(266;0.0877)|Melanoma(130;0.128)		LUSC - Lung squamous cell carcinoma(543;0.151)|Colorectal(543;0.198)			AAGTCTGAATGGAGGAAACAC	0.318													19	28					0	0	0.062417	0	0
CRABP2	1382	broad.mit.edu	37	1	156670351	156670351	+	Missense_Mutation	SNP	C	T	T	rs146571038	byFrequency	TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr1:156670351C>T	uc001fpr.2	-	3	486	c.349G>A	c.(349-351)GAT>AAT	p.D117N		NM_001878	NP_001869	P29373	RABP2_HUMAN	cellular retinoic acid binding protein 2	117					epidermis development|regulation of transcription, DNA-dependent|signal transduction	cytoplasm|nucleus	retinal binding|retinol binding|transporter activity			upper_aerodigestive_tract(1)	1	all_hematologic(923;0.088)|Hepatocellular(266;0.158)				Alitretinoin(DB00523)	AGTTCCCCATCGTTGGTCAGT	0.547													34	59					0	0	0.050027	0	0
DARC	2532	broad.mit.edu	37	1	159175671	159175671	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr1:159175671G>A	uc001fto.2	+	2	682	c.442G>A	c.(442-444)GGG>AGG	p.G148R	DARC_uc001ftp.3_Missense_Mutation_p.G150R	NM_002036	NP_002027	Q16570	DUFFY_HUMAN	Duffy blood group antigen isoform b	148	Helical; Name=3; (Potential).				defense response	integral to membrane|plasma membrane	C-C chemokine binding|chemokine receptor activity			ovary(1)|lung(1)	2	all_hematologic(112;0.0429)					TTTGCTGCTAGGGTGCCATGC	0.642													9	21					0	0	0.047766	0	0
FCGR2A	2212	broad.mit.edu	37	1	161479832	161479832	+	Missense_Mutation	SNP	T	A	A	rs141094947		TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr1:161479832T>A	uc001gan.2	+	4	640	c.587T>A	c.(586-588)TTC>TAC	p.F196Y	FCGR2A_uc001gam.2_Missense_Mutation_p.F195Y|FCGR2A_uc001gao.2_RNA	NM_001136219	NP_001129691	P12318	FCG2A_HUMAN	Fc fragment of IgG, low affinity IIa, receptor	196	Extracellular (Potential).|Ig-like C2-type 2.					integral to membrane|plasma membrane	IgG binding|receptor activity			ovary(1)	1	all_cancers(52;4.89e-16)|all_hematologic(112;0.0207)		BRCA - Breast invasive adenocarcinoma(70;0.00376)		Abciximab(DB00054)|Adalimumab(DB00051)|Alefacept(DB00092)|Alemtuzumab(DB00087)|Basiliximab(DB00074)|Bevacizumab(DB00112)|Cetuximab(DB00002)|Daclizumab(DB00111)|Efalizumab(DB00095)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Natalizumab(DB00108)|Palivizumab(DB00110)|Rituximab(DB00073)|Tositumomab(DB00081)|Trastuzumab(DB00072)	TACACGCTGTTCTCATCCAAG	0.527													5	89					0	0	0.014758	0	0
ILDR2	387597	broad.mit.edu	37	1	166927264	166927264	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr1:166927264G>A	uc001gdx.1	-	2	177	c.121C>T	c.(121-123)CGC>TGC	p.R41C		NM_199351	NP_955383	Q71H61	ILDR2_HUMAN	immunoglobulin-like domain containing receptor	41	Ig-like V-type.|Extracellular (Potential).					integral to membrane				ovary(1)	1						AAGTGGCAGCGAAGCACAGTG	0.542													81	112					0	0	0.139131	0	0
IKBKE	9641	broad.mit.edu	37	1	206647678	206647678	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr1:206647678C>T	uc001hdz.1	+	4	460	c.92C>T	c.(91-93)TCC>TTC	p.S31F	IKBKE_uc009xbu.1_Missense_Mutation_p.S31F|IKBKE_uc009xbv.1_Missense_Mutation_p.S31F|IKBKE_uc001hea.1_5'UTR	NM_014002	NP_054721	Q14164	IKKE_HUMAN	IKK-related kinase epsilon	31	Protein kinase.				DNA damage response, signal transduction resulting in induction of apoptosis|innate immune response|MyD88-independent toll-like receptor signaling pathway|negative regulation of type I interferon production|positive regulation of I-kappaB kinase/NF-kappaB cascade|Toll signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|endosome membrane|plasma membrane|PML body	ATP binding|IkappaB kinase activity|NF-kappaB-inducing kinase activity|protein binding			ovary(3)|lung(3)|central_nervous_system(1)|skin(1)	8	Breast(84;0.137)					TGGCAGAAATCCGGAGAGCTG	0.602													40	69					0	0	0.139131	0	0
LEFTY1	10637	broad.mit.edu	37	1	226075168	226075168	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr1:226075168G>A	uc001hpo.2	-	3	738	c.668C>T	c.(667-669)TCG>TTG	p.S223L	LEFTY1_uc010pvj.1_Silent_p.L331L	NM_020997	NP_066277	O75610	LFTY1_HUMAN	left-right determination, factor B	223					cell growth|multicellular organismal development|transforming growth factor beta receptor signaling pathway	extracellular space	cytokine activity|growth factor activity|transforming growth factor beta receptor binding				0	Breast(184;0.197)					CGCCCCCTGCGAGGCAAAGCG	0.701													22	39					0	0	0.091800	0	0
SIPA1L2	57568	broad.mit.edu	37	1	232561550	232561550	+	Missense_Mutation	SNP	G	A	A	rs150962063		TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr1:232561550G>A	uc001hvg.2	-	16	4573	c.4415C>T	c.(4414-4416)TCG>TTG	p.S1472L	SIPA1L2_uc001hvf.2_Missense_Mutation_p.S546L	NM_020808	NP_065859	Q9P2F8	SI1L2_HUMAN	signal-induced proliferation-associated 1 like	1472					regulation of small GTPase mediated signal transduction	intracellular	GTPase activator activity	p.S1472L(1)		ovary(2)|central_nervous_system(2)|pancreas(1)|skin(1)	6		all_cancers(173;0.00605)|Prostate(94;0.128)|all_epithelial(177;0.186)				CCCATAGAACGAAAACTAGGG	0.507													13	35					0	0	0.093190	0	0
OR2M3	127062	broad.mit.edu	37	1	248367272	248367272	+	Silent	SNP	C	T	T			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr1:248367272C>T	uc010pzg.1	+	1	903	c.903C>T	c.(901-903)TTC>TTT	p.F301F		NM_001004689	NP_001004689	Q8NG83	OR2M3_HUMAN	olfactory receptor, family 2, subfamily M,	301	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0245)			CCAGAGCATTCATGAAGATCT	0.428													41	73					0	0	0.139131	0	0
NEBL	10529	broad.mit.edu	37	10	21106623	21106623	+	Splice_Site	SNP	T	A	A			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr10:21106623T>A	uc001iqi.2	-	21	2453	c.2056_splice	c.e21-1	p.V686_splice	NEBL_uc001iqj.2_Splice_Site|NEBL_uc001iqk.2_Intron|NEBL_uc001iql.1_Splice_Site	NM_006393	NP_006384	O76041	NEBL_HUMAN	nebulette sarcomeric isoform						regulation of actin filament length		actin binding|structural constituent of muscle			ovary(2)	2						ATATTTTACCTAAGAAGGATA	0.383													24	35					0	0	0.076483	0	0
APBB1IP	54518	broad.mit.edu	37	10	26849057	26849057	+	Silent	SNP	C	T	T			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr10:26849057C>T	uc001iss.2	+	12	1500	c.1179C>T	c.(1177-1179)TCC>TCT	p.S393S		NM_019043	NP_061916	Q7Z5R6	AB1IP_HUMAN	amyloid beta (A4) precursor protein-binding,	393	PH.				blood coagulation|signal transduction	cytoskeleton|cytosol|focal adhesion|lamellipodium				lung(4)|skin(2)|central_nervous_system(1)	7						AGAAGGAGTCCCAGTATATCA	0.453													45	81					0	0	0.139131	0	0
HSD17B7P2	158160	broad.mit.edu	37	10	38654432	38654432	+	Missense_Mutation	SNP	A	G	G	rs2257765		TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr10:38654432A>G	uc010qex.1	+	5	599	c.524A>G	c.(523-525)AAT>AGT	p.N175S	HSD17B7P2_uc001izq.2_RNA|HSD17B7P2_uc001izo.1_RNA|HSD17B7P2_uc001izp.1_Missense_Mutation_p.N173S					SubName: Full=cDNA FLJ60462, highly similar to 3-keto-steroid reductase (EC 1.1.1.270);												0						TCATCTCGCAATGCAAGGAAA	0.453													3	62					0	0	0.115264	0	0
PSAP	5660	broad.mit.edu	37	10	73590984	73590984	+	Nonsense_Mutation	SNP	T	A	A			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr10:73590984T>A	uc001jsm.2	-	4	378	c.274A>T	c.(274-276)AAG>TAG	p.K92*		NM_002778	NP_002769	P07602	SAP_HUMAN	prosaposin isoform a preproprotein	92	Saposin B-type 1.				glycosphingolipid metabolic process|lipid transport|platelet activation|platelet degranulation	extracellular space|Golgi apparatus|integral to membrane|lysosomal lumen	enzyme activator activity|lipid binding			ovary(1)	1						TCACAGGTCTTCTCCAAGTAA	0.498													22	9					0	0	0.069288	0	0
NRG3	10718	broad.mit.edu	37	10	84744883	84744883	+	Missense_Mutation	SNP	G	A	A	rs117241349		TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr10:84744883G>A	uc001kco.2	+	9	1640	c.1613G>A	c.(1612-1614)CGA>CAA	p.R538Q	NRG3_uc010qlz.1_Missense_Mutation_p.R537Q|NRG3_uc001kcp.2_Missense_Mutation_p.R341Q|NRG3_uc001kcq.2_Missense_Mutation_p.R188Q|NRG3_uc001kcr.2_Missense_Mutation_p.R212Q	NM_001010848	NP_001010848	P56975	NRG3_HUMAN	neuregulin 3 isoform 1	562	Cytoplasmic (Potential).				regulation of cell growth	extracellular region|integral to plasma membrane	growth factor activity|receptor tyrosine kinase binding|transmembrane receptor protein tyrosine kinase activator activity			lung(5)|breast(1)	6				GBM - Glioblastoma multiforme(1;2.5e-18)|all cancers(1;2.85e-09)		AAAACCCAACGAAATACATCA	0.363													83	53					0	0	0.139131	0	0
MMRN2	79812	broad.mit.edu	37	10	88703091	88703091	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr10:88703091C>T	uc001kea.2	-	6	1577	c.1450G>A	c.(1450-1452)GAC>AAC	p.D484N	MMRN2_uc010qmn.1_Missense_Mutation_p.D127N|MMRN2_uc009xtb.2_Missense_Mutation_p.D441N	NM_024756	NP_079032	Q9H8L6	MMRN2_HUMAN	multimerin 2 precursor	484	Potential.					extracellular space				large_intestine(1)	1						TTGATGAGGTCGGCATGGCCA	0.597													36	14					0	0	0.064281	0	0
CYP2C19	1557	broad.mit.edu	37	10	96580369	96580369	+	Silent	SNP	C	T	T			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr10:96580369C>T	uc010qnz.1	+	6	936	c.936C>T	c.(934-936)CTC>CTT	p.L312L	CYP2C19_uc010qny.1_Silent_p.L290L	NM_000769	NP_000760	P33261	CP2CJ_HUMAN	cytochrome P450, family 2, subfamily C,	312					exogenous drug catabolic process|heterocycle metabolic process|monoterpenoid metabolic process|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	(S)-limonene 6-monooxygenase activity|(S)-limonene 7-monooxygenase activity|4-hydroxyacetophenone monooxygenase activity|electron carrier activity|enzyme binding|heme binding|oxygen binding|steroid hydroxylase activity			ovary(4)|central_nervous_system(1)|skin(1)	6		Colorectal(252;0.09)		all cancers(201;6.02e-07)|KIRC - Kidney renal clear cell carcinoma(50;0.0672)|Kidney(138;0.0838)	Adinazolam(DB00546)|Aminophenazone(DB01424)|Amitriptyline(DB00321)|Amoxicillin(DB01060)|Arformoterol(DB01274)|Bortezomib(DB00188)|Carisoprodol(DB00395)|Chlorzoxazone(DB00356)|Cilostazol(DB01166)|Citalopram(DB00215)|Clarithromycin(DB01211)|Clobazam(DB00349)|Desipramine(DB01151)|Desloratadine(DB00967)|Diclofenac(DB00586)|Diltiazem(DB00343)|Efavirenz(DB00625)|Esomeprazole(DB00736)|Famotidine(DB00927)|Felbamate(DB00949)|Finasteride(DB01216)|Flunitrazepam(DB01544)|Fluvoxamine(DB00176)|Formoterol(DB00983)|Fosphenytoin(DB01320)|Guanfacine(DB01018)|Imipramine(DB00458)|Indomethacin(DB00328)|Ketoconazole(DB01026)|Lansoprazole(DB00448)|Lapatinib(DB01259)|Loratadine(DB00455)|Melatonin(DB01065)|Mephenytoin(DB00532)|Methadone(DB00333)|Methylphenobarbital(DB00849)|Moclobemide(DB01171)|Modafinil(DB00745)|Nelfinavir(DB00220)|Nicardipine(DB00622)|Nilutamide(DB00665)|Norgestrel(DB00506)|Omeprazole(DB00338)|Oxcarbazepine(DB00776)|Pantoprazole(DB00213)|Pentamidine(DB00738)|Phenobarbital(DB01174)|Phenytoin(DB00252)|Primidone(DB00794)|Progesterone(DB00396)|Proguanil(DB01131)|Promazine(DB00420)|Quinidine(DB00908)|Rabeprazole(DB01129)|Ranitidine(DB00863)|Ritonavir(DB00503)|Selegiline(DB01037)|Sertraline(DB01104)|Temazepam(DB00231)|Teniposide(DB00444)|Terfenadine(DB00342)|Thalidomide(DB01041)|Thioridazine(DB00679)|Ticlopidine(DB00208)|Tolbutamide(DB01124)|Topiramate(DB00273)|Tranylcypromine(DB00752)|Troglitazone(DB00197)|Troleandomycin(DB01361)|Voriconazole(DB00582)	CTCTCCTTCTCCTGCTGAAGC	0.453													48	24					0	0	0.139131	0	0
BTRC	8945	broad.mit.edu	37	10	103310477	103310477	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr10:103310477C>T	uc001kta.2	+	14	1791	c.1678C>T	c.(1678-1680)CGA>TGA	p.R560*	BTRC_uc001ktb.2_Nonsense_Mutation_p.R524*|BTRC_uc001ktc.2_Nonsense_Mutation_p.R534*	NM_033637	NP_378663	Q9Y297	FBW1A_HUMAN	beta-transducin repeat containing protein	560	WD 7.				anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|interspecies interaction between organisms|negative regulation of transcription, DNA-dependent|positive regulation of proteolysis|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein destabilization|viral reproduction|Wnt receptor signaling pathway	cytosol|nucleus|SCF ubiquitin ligase complex				ovary(1)	1		Colorectal(252;0.234)		Epithelial(162;1.05e-08)|all cancers(201;6.59e-07)		AAGAGTTTTTCGACTACAGTT	0.408													33	25					0	0	0.086207	0	0
MMP26	56547	broad.mit.edu	37	11	5013332	5013332	+	Missense_Mutation	SNP	T	G	G			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr11:5013332T>G	uc001lzv.2	+	5	752	c.734T>G	c.(733-735)ATC>AGC	p.I245S		NM_021801	NP_068573	Q9NRE1	MMP26_HUMAN	matrix metalloproteinase 26 preproprotein	245					collagen catabolic process|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0		Medulloblastoma(188;0.0025)|Breast(177;0.0204)|all_neural(188;0.0227)		Epithelial(150;1.33e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0287)|LUSC - Lung squamous cell carcinoma(625;0.191)		GCCGATGATATCCAAAGGATC	0.453													13	38					0	0	0.093190	0	0
GALNTL4	374378	broad.mit.edu	37	11	11470319	11470319	+	Silent	SNP	G	T	T			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr11:11470319G>T	uc001mjo.2	-	2	821	c.400C>A	c.(400-402)CGG>AGG	p.R134R		NM_198516	NP_940918	Q6P9A2	GLTL4_HUMAN	UDP-N-acetyl-alpha-D-galactosamine:polypeptide	134	Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding				0				all cancers(16;3.67e-05)|Epithelial(150;0.000184)		GGCAGGGGCCGGTCCAGGGGC	0.622													8	38					6.40141e-05	6.58173e-05	0.080935	1	0
FAR1	84188	broad.mit.edu	37	11	13733493	13733493	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr11:13733493C>T	uc001mld.2	+	7	942	c.787C>T	c.(787-789)CGA>TGA	p.R263*	FAR1_uc009ygp.2_Nonsense_Mutation_p.R263*	NM_032228	NP_115604	Q8WVX9	FACR1_HUMAN	fatty acyl CoA reductase 1	263					ether lipid biosynthetic process	integral to membrane|peroxisomal matrix|peroxisomal membrane	protein binding			ovary(1)|skin(1)	2						AGGAATTCTTCGAACAATACG	0.368													16	26					0	0	0.038395	0	0
RAG1	5896	broad.mit.edu	37	11	36594863	36594863	+	Silent	SNP	C	T	T			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr11:36594863C>T	uc001mwu.3	+	2	133	c.9C>T	c.(7-9)GCC>GCT	p.A3A	RAG1_uc001mwt.2_RNA	NM_000448	NP_000439	P15918	RAG1_HUMAN	recombination activating gene 1	3	Interaction with importin alpha-1.				histone monoubiquitination|immune response|pre-B cell allelic exclusion|protein autoubiquitination|T cell differentiation in thymus|V(D)J recombination	nucleus	endonuclease activity|histone binding|protein homodimerization activity|sequence-specific DNA binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|pancreas(1)|lung(1)|kidney(1)|skin(1)	5	all_lung(20;0.226)	all_hematologic(20;0.107)				GCATGGCAGCCTCTTTCCCAC	0.388									Familial_Hemophagocytic_Lymphohistiocytosis				46	75					0	0	0.139131	0	0
LRP4	4038	broad.mit.edu	37	11	46914607	46914607	+	Silent	SNP	G	A	A			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr11:46914607G>A	uc001ndn.3	-	13	1760	c.1614C>T	c.(1612-1614)GCC>GCT	p.A538A		NM_002334	NP_002325	O75096	LRP4_HUMAN	low density lipoprotein receptor-related protein	538	Extracellular (Potential).|LDL-receptor class B 2.				endocytosis|negative regulation of canonical Wnt receptor signaling pathway|Wnt receptor signaling pathway	integral to membrane	calcium ion binding|receptor activity			skin(2)|upper_aerodigestive_tract(1)|ovary(1)	4				Lung(87;0.159)		CATCCAGATTGGCCACCTCAA	0.572													9	30					0	0	0.119110	0	0
OR4C6	219432	broad.mit.edu	37	11	55433488	55433488	+	Silent	SNP	C	T	T			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr11:55433488C>T	uc001nht.3	+	3	1111	c.846C>T	c.(844-846)CCC>CCT	p.P282P	OR4C6_uc010rik.1_Silent_p.P282P	NM_001004704	NP_001004704	Q8NH72	OR4C6_HUMAN	olfactory receptor, family 4, subfamily C,	282	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2						TGTTAAATCCCTTGATCTATA	0.458													31	49					0	0	0.059317	0	0
OR8J3	81168	broad.mit.edu	37	11	55904316	55904316	+	Silent	SNP	C	T	T			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr11:55904316C>T	uc010riz.1	-	1	879	c.879G>A	c.(877-879)AGG>AGA	p.R293R		NM_001004064	NP_001004064	Q8NGG0	OR8J3_HUMAN	olfactory receptor, family 8, subfamily J,	293	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	Esophageal squamous(21;0.00693)					CATCATTATTCCTCAGGCTGT	0.358													23	51					0	0	0.099896	0	0
OR5AP2	338675	broad.mit.edu	37	11	56409572	56409572	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr11:56409572C>T	uc001njb.1	-	1	344	c.344G>A	c.(343-345)GGG>GAG	p.G115E		NM_001002925	NP_001002925	Q8NGF4	O5AP2_HUMAN	olfactory receptor, family 5, subfamily AP,	115	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4						GCACTCAGTCCCCAGGAAGGA	0.512													8	45					0	0	0.047766	0	0
APLNR	187	broad.mit.edu	37	11	57003456	57003456	+	Silent	SNP	C	T	T			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr11:57003456C>T	uc001njo.2	-	1	1472	c.1023G>A	c.(1021-1023)GAG>GAA	p.E341E	APLNR_uc001njn.3_RNA	NM_005161	NP_005152	P35414	APJ_HUMAN	apelin receptor	341	Cytoplasmic (Potential).					integral to plasma membrane	G-protein coupled receptor activity			lung(5)|ovary(1)	6						TGGCTGACTTCTCCCCACTGC	0.637													29	43					0	0	0.125774	0	0
MPEG1	219972	broad.mit.edu	37	11	58980174	58980174	+	Silent	SNP	C	T	T			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr11:58980174C>T	uc001nnu.3	-	1	321	c.165G>A	c.(163-165)CGG>CGA	p.R55R		NM_001039396	NP_001034485	Q2M385	MPEG1_HUMAN	macrophage expressed gene 1 precursor	55	MACPF.|Extracellular (Potential).					integral to membrane				ovary(1)|skin(1)	2		all_epithelial(135;0.125)				TGTCCACATTCCGCAGATTGT	0.488													101	156					0	0	0.139131	0	0
SLC22A10	387775	broad.mit.edu	37	11	63072257	63072257	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr11:63072257G>A	uc009yor.2	+	9	1702	c.1494G>A	c.(1492-1494)TGG>TGA	p.W498*	SLC22A10_uc010rmo.1_Intron|SLC22A10_uc001nwu.3_RNA|SLC22A10_uc010rmp.1_3'UTR	NM_001039752	NP_001034841	Q63ZE4	S22AA_HUMAN	solute carrier family 22, member 10	498	Helical; (Potential).					integral to membrane	transmembrane transporter activity			ovary(2)	2						CTTTGCCATGGATCATTTATG	0.458													29	64					0	0	0.134883	0	0
DRD2	1813	broad.mit.edu	37	11	113286216	113286216	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr11:113286216C>T	uc001pnz.2	-	4	971	c.650G>A	c.(649-651)CGC>CAC	p.R217H	DRD2_uc010rwv.1_Missense_Mutation_p.R216H|DRD2_uc001poa.3_Missense_Mutation_p.R217H|DRD2_uc001pob.3_Missense_Mutation_p.R217H|DRD2_uc009yyr.1_Missense_Mutation_p.R217H	NM_000795	NP_000786	P14416	DRD2_HUMAN	dopamine receptor D2 isoform long	217	Cytoplasmic (By similarity).|Interaction with PPP1R9B (By similarity).				activation of phospholipase C activity by dopamine receptor signaling pathway|adenohypophysis development|adult walking behavior|arachidonic acid secretion|axonogenesis|behavioral response to cocaine|behavioral response to ethanol|branching morphogenesis of a nerve|cerebral cortex GABAergic interneuron migration|circadian regulation of gene expression|elevation of cytosolic calcium ion concentration involved in G-protein signaling coupled to IP3 second messenger|inhibition of adenylate cyclase activity by dopamine receptor signaling pathway|intracellular protein kinase cascade|negative regulation of blood pressure|negative regulation of calcium ion transport via voltage-gated calcium channel activity|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of dopamine receptor signaling pathway|negative regulation of protein kinase B signaling cascade|negative regulation of protein secretion|negative regulation of synaptic transmission, glutamatergic|neurological system process involved in regulation of systemic arterial blood pressure|peristalsis|phosphatidylinositol metabolic process|positive regulation of dopamine uptake|positive regulation of growth hormone secretion|positive regulation of neuroblast proliferation|prepulse inhibition|protein localization|regulation of heart rate|regulation of long-term neuronal synaptic plasticity|regulation of potassium ion transport|regulation of sodium ion transport|regulation of synaptic transmission, GABAergic|release of sequestered calcium ion into cytosol|response to amphetamine|response to drug|response to histamine|response to morphine|sensory perception of smell|synapse assembly|temperature homeostasis|visual learning	integral to plasma membrane	dopamine D2 receptor activity|dopamine receptor activity, coupled via Gi/Go|drug binding|potassium channel regulator activity|protein binding			pancreas(1)|skin(1)	2		all_cancers(61;3.91e-16)|all_epithelial(67;2.95e-09)|Melanoma(852;1.46e-05)|all_hematologic(158;0.00014)|Acute lymphoblastic leukemia(157;0.000977)|Breast(348;0.0101)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)|Prostate(24;0.0494)		BRCA - Breast invasive adenocarcinoma(274;5.77e-06)|Epithelial(105;6.66e-05)|all cancers(92;0.000307)|OV - Ovarian serous cystadenocarcinoma(223;0.216)	Acetophenazine(DB01063)|Amantadine(DB00915)|Apomorphine(DB00714)|Aripiprazole(DB01238)|Bromocriptine(DB01200)|Buspirone(DB00490)|Cabergoline(DB00248)|Carphenazine(DB01038)|Chlorpromazine(DB00477)|Chlorprothixene(DB01239)|Cinnarizine(DB00568)|Clozapine(DB00363)|Domperidone(DB01184)|Droperidol(DB00450)|Ergotamine(DB00696)|Flupenthixol(DB00875)|Fluphenazine(DB00623)|Fluspirilene(DB04842)|Haloperidol(DB00502)|Levodopa(DB01235)|Lisuride(DB00589)|Loxapine(DB00408)|Mesoridazine(DB00933)|Metoclopramide(DB01233)|Minaprine(DB00805)|Molindone(DB01618)|Olanzapine(DB00334)|Paliperidone(DB01267)|Pergolide(DB01186)|Perphenazine(DB00850)|Pimozide(DB01100)|Pramipexole(DB00413)|Prochlorperazine(DB00433)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Quetiapine(DB01224)|Remoxipride(DB00409)|Risperidone(DB00734)|Ropinirole(DB00268)|Sertindole(DB06144)|Sulpiride(DB00391)|Thiethylperazine(DB00372)|Thioridazine(DB00679)|Tranylcypromine(DB00752)|Trifluoperazine(DB00831)|Triflupromazine(DB00508)|Ziprasidone(DB00246)|Zuclopenthixol(DB01624)	GCGGCGTCTGCGGAGGACAAT	0.572													52	101					0	0	0.139131	0	0
MIR125B1	406911	broad.mit.edu	37	11	121970470	121970470	+	RNA	SNP	G	A	A			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr11:121970470G>A	hsa-mir-125b-1|MI0000446	-			c.83G>A			LOC399959_uc009zba.2_Intron|uc001pxz.1_Intron|LOC399959_uc001pya.3_Intron|LOC399959_uc001pyc.1_Intron|LOC399959_uc001pyd.1_Intron|uc001pye.1_5'Flank|uc010rzr.1_RNA																	0						GCAAAAGCACGACTCGCAGCT	0.413													6	17					0	0	0.029380	0	0
B4GALNT3	283358	broad.mit.edu	37	12	665929	665929	+	Silent	SNP	C	T	T			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr12:665929C>T	uc001qii.1	+	15	2277	c.2277C>T	c.(2275-2277)AAC>AAT	p.N759N	B4GALNT3_uc001qik.1_Silent_p.N308N	NM_173593	NP_775864	Q6L9W6	B4GN3_HUMAN	beta	759	Lumenal (Potential).					Golgi cisterna membrane|integral to membrane	N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase activity			ovary(1)|skin(1)	2	all_cancers(10;0.0158)|all_epithelial(11;0.0274)|Ovarian(42;0.0512)|all_lung(10;0.154)|Lung NSC(10;0.215)		OV - Ovarian serous cystadenocarcinoma(31;0.00018)|BRCA - Breast invasive adenocarcinoma(9;0.0262)			ACCCACACAACCGTAGGAGAC	0.642													17	29					0	0	0.049695	0	0
FOXJ2	55810	broad.mit.edu	37	12	8196560	8196560	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr12:8196560C>T	uc001qtu.2	+	5	1576	c.491C>T	c.(490-492)TCA>TTA	p.S164L	FOXJ2_uc001qtt.1_Missense_Mutation_p.S164L	NM_018416	NP_060886	Q9P0K8	FOXJ2_HUMAN	forkhead box J2	164					embryo development|organ development|pattern specification process|positive regulation of transcription, DNA-dependent|regulation of sequence-specific DNA binding transcription factor activity|tissue development	nucleolus|transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|protein domain specific binding|sequence-specific DNA binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription factor binding			upper_aerodigestive_tract(2)|ovary(2)|skin(1)	5				Kidney(36;0.0944)		TCCCAAGACTCACCAGAACAG	0.542													44	79					0	0	0.117977	0	0
A2ML1	144568	broad.mit.edu	37	12	8995765	8995765	+	Silent	SNP	G	A	A			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr12:8995765G>A	uc001quz.3	+	12	1382	c.1284G>A	c.(1282-1284)CCG>CCA	p.P428P	A2ML1_uc001qva.1_Silent_p.P8P|A2ML1_uc010sgm.1_5'Flank	NM_144670	NP_653271	A8K2U0	A2ML1_HUMAN	alpha-2-macroglobulin-like 1 precursor	272						extracellular space	endopeptidase inhibitor activity			ovary(2)|skin(1)	3						TATATAATCCGGAACAAGTGC	0.488													44	83					0	0	0.139131	0	0
SLCO1C1	53919	broad.mit.edu	37	12	20870068	20870068	+	Missense_Mutation	SNP	T	G	G			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr12:20870068T>G	uc001rej.3	+	8	1034	c.679T>G	c.(679-681)TGT>GGT	p.C227G	SLCO1C1_uc010sii.1_Missense_Mutation_p.C227G|SLCO1C1_uc010sij.1_Missense_Mutation_p.C178G|SLCO1C1_uc009zip.2_Missense_Mutation_p.C61G|SLCO1C1_uc001rei.2_Missense_Mutation_p.C227G|SLCO1C1_uc010sik.1_Missense_Mutation_p.C109G	NM_017435	NP_059131	Q9NYB5	SO1C1_HUMAN	solute carrier organic anion transporter family,	227	Cytoplasmic (Potential).				sodium-independent organic anion transport	integral to membrane|plasma membrane	thyroid hormone transmembrane transporter activity			ovary(5)|pancreas(1)|skin(1)	7	Esophageal squamous(101;0.149)					TGGTGCAGGGTGTGTGCAGAC	0.343													12	32					0	0	0.119110	0	0
KCNJ8	3764	broad.mit.edu	37	12	21919470	21919470	+	Silent	SNP	C	T	T			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr12:21919470C>T	uc001rff.2	-	3	800	c.462G>A	c.(460-462)TTG>TTA	p.L154L		NM_004982	NP_004973	Q15842	IRK8_HUMAN	potassium inwardly-rectifying channel J8	154	Extracellular (By similarity).					voltage-gated potassium channel complex					0					Levosimendan(DB00922)	CCGTGATGGCCAAAGGGCATT	0.443													24	36					0	0	0.108266	0	0
TM7SF3	51768	broad.mit.edu	37	12	27133557	27133557	+	Silent	SNP	G	A	A			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr12:27133557G>A	uc010sjl.1	-	8	1216	c.978C>T	c.(976-978)ATC>ATT	p.I326I		NM_016551	NP_057635	Q9NS93	TM7S3_HUMAN	transmembrane 7 superfamily member 3 precursor	326	Phe-rich.|Helical; (Potential).					integral to membrane|plasma membrane				upper_aerodigestive_tract(2)	2	Colorectal(261;0.0847)					ATCCCATGATGATAAAGCCTA	0.338													19	32					0	0	0.049695	0	0
ADAMTS20	80070	broad.mit.edu	37	12	43824155	43824155	+	Silent	SNP	C	T	T			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr12:43824155C>T	uc010skx.1	-	23	3381	c.3381G>A	c.(3379-3381)CAG>CAA	p.Q1127Q	ADAMTS20_uc001rno.1_Silent_p.Q281Q|ADAMTS20_uc001rnp.1_Silent_p.Q281Q	NM_025003	NP_079279	P59510	ATS20_HUMAN	a disintegrin-like and metalloprotease with	1127	TSP type-1 6.					proteinaceous extracellular matrix	zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|large_intestine(2)|skin(2)|urinary_tract(1)|kidney(1)|pancreas(1)	19	all_cancers(12;2.6e-05)|Lung SC(27;0.184)	Lung NSC(34;0.0569)|all_lung(34;0.129)		GBM - Glioblastoma multiforme(48;0.0473)		TTCTTTTTACCTGTCTGTCAC	0.348													10	18					0	0	0.093190	0	0
ARID2	196528	broad.mit.edu	37	12	46244079	46244079	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr12:46244079C>T	uc001ros.1	+	15	2173	c.2173C>T	c.(2173-2175)CAG>TAG	p.Q725*	ARID2_uc001ror.2_Nonsense_Mutation_p.Q725*|ARID2_uc009zkg.1_Nonsense_Mutation_p.Q181*|ARID2_uc009zkh.1_Nonsense_Mutation_p.Q352*|ARID2_uc001rou.1_Nonsense_Mutation_p.Q59*	NM_152641	NP_689854	Q68CP9	ARID2_HUMAN	AT rich interactive domain 2 (ARID, RFX-like)	725					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(6)|skin(3)|upper_aerodigestive_tract(1)	10	Lung SC(27;0.192)|Renal(347;0.236)	Lung NSC(34;0.106)|all_lung(34;0.22)	OV - Ovarian serous cystadenocarcinoma(5;0.00691)	GBM - Glioblastoma multiforme(48;0.0153)		TTCCATACCCCAGACAGGAGT	0.443													39	61					0	0	0.104719	0	0
OR6C70	390327	broad.mit.edu	37	12	55863874	55863874	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr12:55863874C>T	uc010spn.1	-	1	49	c.49G>A	c.(49-51)GAT>AAT	p.D17N		NM_001005499	NP_001005499	A6NIJ9	O6C70_HUMAN	olfactory receptor, family 6, subfamily C,	17	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						TGAGAATTATCCGTCAGTCCC	0.353													21	28					0	0	0.108266	0	0
CCDC62	84660	broad.mit.edu	37	12	123282714	123282714	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr12:123282714C>T	uc001udc.2	+	8	1089	c.944C>T	c.(943-945)TCA>TTA	p.S315L	CCDC62_uc010tah.1_RNA|CCDC62_uc001udf.2_Missense_Mutation_p.S315L|CCDC62_uc001ude.2_Missense_Mutation_p.S76L	NM_201435	NP_958843	Q6P9F0	CCD62_HUMAN	coiled-coil domain containing 62 isoform b	315	Potential.					cytoplasm|nucleus				ovary(2)|large_intestine(1)|pancreas(1)|skin(1)	5	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;6.51e-06)|Epithelial(86;2.65e-05)|BRCA - Breast invasive adenocarcinoma(302;0.206)		ATGTATGACTCAAAGATGGAG	0.284													10	10					0	0	0.069234	0	0
NCOR2	9612	broad.mit.edu	37	12	124887093	124887093	+	Silent	SNP	C	T	T			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr12:124887093C>T	uc010tba.1	-	14	1614	c.1497G>A	c.(1495-1497)CAG>CAA	p.Q499Q	NCOR2_uc010tay.1_Silent_p.Q499Q|NCOR2_uc010taz.1_Silent_p.Q499Q|NCOR2_uc010tbb.1_Silent_p.Q499Q|NCOR2_uc010tbc.1_Silent_p.Q498Q|NCOR2_uc001ugj.1_Silent_p.Q499Q	NM_001077261	NP_001070729	Q9Y618	NCOR2_HUMAN	nuclear receptor co-repressor 2 isoform 2	499	Poly-Gln.				cellular lipid metabolic process|negative regulation of transcription from RNA polymerase II promoter|regulation of cellular ketone metabolic process by negative regulation of transcription from an RNA polymerase II promoter|transcription, DNA-dependent	nuclear body|nucleus|transcriptional repressor complex	DNA binding|histone deacetylase binding|Notch binding|protein N-terminus binding|transcription corepressor activity			skin(3)|ovary(1)	4	all_neural(191;0.0804)|Medulloblastoma(191;0.163)			Epithelial(86;3.99e-05)|OV - Ovarian serous cystadenocarcinoma(86;9.14e-05)|all cancers(50;0.000402)|BRCA - Breast invasive adenocarcinoma(302;0.0764)		gctgctgctgctgttgttgct	0.328													3	14					0	0	0.009096	0	0
NYNRIN	57523	broad.mit.edu	37	14	24884562	24884562	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr14:24884562C>T	uc001wpf.3	+	9	3925	c.3607C>T	c.(3607-3609)CAG>TAG	p.Q1203*		NM_025081	NP_079357	Q9P2P1	NYNRI_HUMAN	hypothetical protein LOC57523	1203					DNA integration	integral to membrane	DNA binding			ovary(2)|central_nervous_system(1)	3						CCAGGGCCCCCAGTCAGGGGG	0.622													48	31					0	0	0.139131	0	0
SLC8A3	6547	broad.mit.edu	37	14	70512851	70512851	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr14:70512851G>A	uc001xly.2	-	8	3351	c.2597C>T	c.(2596-2598)ACC>ATC	p.T866I	SLC8A3_uc001xlu.2_Missense_Mutation_p.T223I|SLC8A3_uc001xlv.2_Missense_Mutation_p.T237I|SLC8A3_uc001xlw.2_Missense_Mutation_p.T863I|SLC8A3_uc001xlx.2_Missense_Mutation_p.T864I|SLC8A3_uc001xlz.2_Missense_Mutation_p.T860I|SLC8A3_uc010ara.2_RNA|SLC8A3_uc001xma.2_3'UTR	NM_183002	NP_892114	P57103	NAC3_HUMAN	solute carrier family 8 (sodium/calcium	866	Helical; (Potential).				cell communication|platelet activation	integral to membrane|plasma membrane	calcium:sodium antiporter activity|calmodulin binding			skin(3)|ovary(2)|breast(2)	7				BRCA - Breast invasive adenocarcinoma(234;0.0079)|all cancers(60;0.0102)|OV - Ovarian serous cystadenocarcinoma(108;0.0555)		GGTGAAGAGGGTGACGGAGAA	0.647											OREG0022773	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	25	11					0	0	0.091800	0	0
YLPM1	56252	broad.mit.edu	37	14	75265550	75265550	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr14:75265550C>T	uc001xqj.3	+	5	3674	c.3550C>T	c.(3550-3552)CAC>TAC	p.H1184Y	YLPM1_uc001xql.3_RNA	NM_019589	NP_062535	P49750	YLPM1_HUMAN	YLP motif containing 1	989	Arg-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear speck				ovary(2)|pancreas(1)	3			KIRC - Kidney renal clear cell carcinoma(43;0.238)	BRCA - Breast invasive adenocarcinoma(234;0.00162)		GTATCCATATCACCGGGATGA	0.493													28	10					0	0	0.134883	0	0
TCL6	27004	broad.mit.edu	37	14	96136820	96136820	+	Silent	SNP	C	A	A			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr14:96136820C>A	uc001yeq.2	+	6	1769	c.300C>A	c.(298-300)GCC>GCA	p.A100A	TCL6_uc001yep.1_RNA|TCL6_uc001yes.2_3'UTR|TCL6_uc001yet.1_Silent_p.A42A|TCL6_uc001yeu.2_3'UTR|TCL6_uc001yev.2_Intron|TCL1B_uc001yew.2_RNA|TCL1B_uc001yex.2_RNA|TCL1B_uc010avj.2_RNA|TCL6_uc010avk.1_RNA	NM_020554	NP_065579			SubName: Full=T-cell leukemia/lymphoma 6 ORF163;												0		all_cancers(154;0.103)		Epithelial(152;0.0655)|all cancers(159;0.149)|BRCA - Breast invasive adenocarcinoma(234;0.206)|COAD - Colon adenocarcinoma(157;0.207)		CACACTGGGCCAAGAGCAGCT	0.453			T	TRA@	T-ALL								19	16					6.44725e-10	6.6917e-10	0.069288	1	0
FBN1	2200	broad.mit.edu	37	15	48729974	48729975	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr15:48729974_48729975CC>TT	uc001zwx.1	-	51	6631_6632	c.6303_6304GG>AA	c.(6301-6306)ACGGAA>ACAAAA	p.E2102K	FBN1_uc010beo.1_RNA	NM_000138	NP_000129	P35555	FBN1_HUMAN	fibrillin 1 precursor	2102	TB 8.				heart development|negative regulation of BMP signaling pathway by extracellular sequestering of BMP|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|skeletal system development	basement membrane|extracellular space|microfibril	calcium ion binding|extracellular matrix structural constituent|protein binding			ovary(2)|large_intestine(1)	3		all_lung(180;0.00279)		all cancers(107;4.24e-07)|GBM - Glioblastoma multiforme(94;1.41e-05)		CCATCAGGTTCCGTGGGGCAGA	0.52													22	43					0	0	0.115264	0	0
SLC27A2	11001	broad.mit.edu	37	15	50494781	50494781	+	Silent	SNP	C	T	T			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr15:50494781C>T	uc001zxw.2	+	3	1018	c.786C>T	c.(784-786)ATC>ATT	p.I262I	SLC27A2_uc010bes.2_Intron|SLC27A2_uc001zxx.2_Silent_p.I27I	NM_003645	NP_003636	O14975	S27A2_HUMAN	solute carrier family 27 (fatty acid	262	Helical; (Potential).				bile acid biosynthetic process|fatty acid alpha-oxidation	endoplasmic reticulum membrane|integral to membrane|peroxisomal matrix|peroxisomal membrane	ATP binding|long-chain fatty acid-CoA ligase activity|phytanate-CoA ligase activity|pristanate-CoA ligase activity			ovary(1)|skin(1)	2		all_lung(180;0.00177)		all cancers(107;1.16e-06)|GBM - Glioblastoma multiforme(94;0.000113)		TCATCTATATCACTCTGCCCT	0.453													50	86					0	0	0.139131	0	0
MYO5C	55930	broad.mit.edu	37	15	52538156	52538156	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr15:52538156G>A	uc010bff.2	-	17	2200	c.2063C>T	c.(2062-2064)TCC>TTC	p.S688F	MYO5C_uc010uga.1_RNA|MYO5C_uc010ugb.1_RNA	NM_018728	NP_061198	Q9NQX4	MYO5C_HUMAN	myosin VC	688	Myosin head-like.					myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(7)|central_nervous_system(3)|large_intestine(2)|skin(2)	14				all cancers(107;0.0137)		AACATACCTGGAAGGGTAGCT	0.448													24	52					0	0	0.125774	0	0
SIN3A	25942	broad.mit.edu	37	15	75722644	75722644	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr15:75722644C>T	uc002bai.2	-	2	332	c.73G>A	c.(73-75)GAG>AAG	p.E25K	SIN3A_uc002baj.2_Missense_Mutation_p.E25K|SIN3A_uc010uml.1_Missense_Mutation_p.E25K|SIN3A_uc002bak.3_Missense_Mutation_p.E25K	NM_015477	NP_056292	Q96ST3	SIN3A_HUMAN	transcriptional co-repressor Sin3A	25					blood coagulation|cellular lipid metabolic process|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleolus|Sin3 complex	protein binding			skin(3)|ovary(1)|lung(1)	5						GGAAAAGCCTCTGTGCTGCCA	0.577													23	47					0	0	0.076483	0	0
Unknown	0	broad.mit.edu	37	15	76072993	76072993	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr15:76072993G>A	uc010umm.1	+	5	382	c.305G>A	c.(304-306)AGT>AAT	p.S102N	uc002bba.1_5'Flank					SubName: Full=cDNA FLJ59077, highly similar to Golgin subfamily A member 6;																		AAAACCAACAGTGAAATACAC	0.483													32	50					0	0	0.050027	0	0
ABCA17P	650655	broad.mit.edu	37	16	2474681	2474681	+	RNA	SNP	G	A	A			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr16:2474681G>A	uc002cqc.1	+	15		c.2850G>A				NR_003574				Homo sapiens cDNA FLJ37881 fis, clone BRSTN2000367.												0						GTTCAGCAGTGGCTACTCCCT	0.642													12	14					0	0	0.105934	0	0
ZNF174	7727	broad.mit.edu	37	16	3458476	3458476	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr16:3458476C>T	uc002cvc.2	+	3	1596	c.781C>T	c.(781-783)CGG>TGG	p.R261W		NM_003450	NP_003441	Q15697	ZN174_HUMAN	zinc finger protein 174 isoform a	261					negative regulation of transcription from RNA polymerase II promoter|viral reproduction	actin cytoskeleton|cytoplasm|nucleus	protein homodimerization activity|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|zinc ion binding				0						TCGGTTGTCACGGAGGCAGGT	0.522													36	65					0	0	0.074837	0	0
ACSM5	54988	broad.mit.edu	37	16	20435364	20435364	+	Silent	SNP	C	T	T			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr16:20435364C>T	uc002dhe.2	+	6	1041	c.894C>T	c.(892-894)CCC>CCT	p.P298P		NM_017888	NP_060358	Q6NUN0	ACSM5_HUMAN	acyl-CoA synthetase medium-chain family member 5	298					fatty acid metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|GTP binding|metal ion binding			ovary(2)	2						ATGAGCTGCCCCGAGTTGATG	0.463													18	67					0	0	0.038395	0	0
CDR2	1039	broad.mit.edu	37	16	22358417	22358417	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr16:22358417G>A	uc002dkn.2	-	5	1542	c.1234C>T	c.(1234-1236)CCC>TCC	p.P412S		NM_001802	NP_001793	Q01850	CDR2_HUMAN	cerebellar degeneration-related protein 2	412						nucleus	protein binding			skin(1)	1				GBM - Glioblastoma multiforme(48;0.0188)		GAACTCACGGGCTCTGGGTTG	0.522													3	46					0	0	0.115264	0	0
RRN3P3	100131998	broad.mit.edu	37	16	22441236	22441236	+	RNA	SNP	G	A	A	rs114681793	by1000genomes	TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr16:22441236G>A	uc002dkp.2	-	5		c.1170C>T			RRN3P3_uc010vbu.1_RNA	NR_027460				Homo sapiens cDNA FLJ31180 fis, clone KIDNE2000266.												0						TGTTCCTCTCGATGATGGTGT	0.507													7	71					0	0	0.029380	0	0
Unknown	0	broad.mit.edu	37	16	32192640	32192640	+	RNA	SNP	G	A	A			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr16:32192640G>A	uc010vfv.1	-	5		c.706C>T								Homo sapiens cDNA FLJ60890 complete cds, moderately similar to HECT domain and RCC1-like domain-containing protein 2.																		TGGTCCTGCAGGGGCATGCTT	0.572													7	46					0	0	0.058154	0	0
GINS3	64785	broad.mit.edu	37	16	58437029	58437029	+	Silent	SNP	C	T	T			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr16:58437029C>T	uc002enh.3	+	2	422	c.214C>T	c.(214-216)CTG>TTG	p.L72L	GINS3_uc010cdj.2_Silent_p.L111L|GINS3_uc002enj.3_Intron|GINS3_uc002eni.3_Silent_p.L72L	NM_022770	NP_073607	Q9BRX5	PSF3_HUMAN	GINS complex subunit 3 isoform b	72					DNA replication	nucleus					0						ACCCTTGTGGCTGGCAAAAGG	0.448													33	49					0	0	0.086207	0	0
HPR	3250	broad.mit.edu	37	16	72107867	72107867	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr16:72107867G>A	uc002fby.2	+	2	112	c.82G>A	c.(82-84)GAT>AAT	p.D28N	TXNL4B_uc010cgl.2_Intron	NM_020995	NP_066275	P00739	HPTR_HUMAN	haptoglobin-related protein precursor	28					proteolysis	spherical high-density lipoprotein particle	hemoglobin binding|serine-type endopeptidase activity			central_nervous_system(1)	1		Ovarian(137;0.125)				TGATGTCACGGATATTTCAGG	0.507													40	70					0	0	0.124865	0	0
BCL6B	255877	broad.mit.edu	37	17	6929856	6929856	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr17:6929856G>A	uc002geg.2	+	6	1027	c.970G>A	c.(970-972)GAA>AAA	p.E324K	BCL6B_uc010clt.1_Missense_Mutation_p.E325K	NM_181844	NP_862827	Q8N143	BCL6B_HUMAN	B-cell CLL/lymphoma 6, member B (zinc finger	324						nucleus	zinc ion binding			skin(1)	1						TCCTGGGGACGAAGACAAACC	0.562													73	102					0	0	0.139131	0	0
MPRIP	23164	broad.mit.edu	37	17	17034973	17034973	+	Silent	SNP	G	A	A			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr17:17034973G>A	uc002gqu.1	+	5	518	c.462G>A	c.(460-462)CAG>CAA	p.Q154Q	MPRIP_uc002gqv.1_Silent_p.Q154Q	NM_201274	NP_958431	Q6WCQ1	MPRIP_HUMAN	myosin phosphatase-Rho interacting protein	154	Interaction with F-actin (By similarity).					cytoplasm|cytoskeleton	actin binding				0						CCAACAAGCAGAATCAGAAGA	0.567													30	45					0	0	0.050027	0	0
FBXW10	10517	broad.mit.edu	37	17	18671873	18671873	+	Silent	SNP	G	A	A			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr17:18671873G>A	uc002guk.2	+	10	1963	c.1731G>A	c.(1729-1731)GTG>GTA	p.V577V	FBXW10_uc002guj.2_Silent_p.V577V|FBXW10_uc002gul.2_Silent_p.V606V|FBXW10_uc010cqh.1_Silent_p.V577V	NM_031456	NP_113644	Q5XX13	FBW10_HUMAN	F-box and WD-40 domain protein 10	577	WD 6.									ovary(1)	1						AGGGAGCCGTGAAATGCCTGT	0.532													21	45					0	0	0.076483	0	0
CCDC103	388389	broad.mit.edu	37	17	42980074	42980074	+	Silent	SNP	C	T	T			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr17:42980074C>T	uc002iho.2	+	4	701	c.618C>T	c.(616-618)TCC>TCT	p.S206S	CCDC103_uc002ihp.1_5'Flank	NM_213607	NP_998772	Q8IW40	CC103_HUMAN	coiled-coil domain containing 103	206										kidney(1)	1		Prostate(33;0.109)				ACCCCAGATCCGTGAAGGAGG	0.632													13	22					0	0	0.105934	0	0
CSH2	1443	broad.mit.edu	37	17	61950700	61950700	+	Splice_Site	SNP	C	T	T			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr17:61950700C>T	uc002jch.2	-	2	126	c.11_splice	c.e2-1	p.G4_splice	CSH2_uc002jcg.2_Splice_Site_p.G4_splice|CSH2_uc002jci.2_Splice_Site_p.G4_splice|GH2_uc002jcj.2_Intron|CSH2_uc002jck.2_Splice_Site_p.G4_splice	NM_020991	NP_066271	P01243	CSH_HUMAN	chorionic somatomammotropin hormone 2 isoform 1						female pregnancy|signal transduction	extracellular region	hormone activity|metal ion binding				0						GTCCGGGAGCCTGGGGAGAAA	0.602													8	29					0	0	0.132662	0	0
ABCA9	10350	broad.mit.edu	37	17	67016572	67016572	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr17:67016572G>A	uc002jhu.2	-	19	2700	c.2557C>T	c.(2557-2559)CGC>TGC	p.R853C	ABCA9_uc010dez.2_Missense_Mutation_p.R853C	NM_080283	NP_525022	Q8IUA7	ABCA9_HUMAN	ATP-binding cassette, sub-family A, member 9	853					transport	integral to membrane	ATP binding|ATPase activity			ovary(4)|upper_aerodigestive_tract(1)|central_nervous_system(1)	6	Breast(10;1.47e-12)					TTTAGGAAGCGAACTTTTGCT	0.398													28	55					0	0	0.050027	0	0
LAMA1	284217	broad.mit.edu	37	18	6971869	6971869	+	Missense_Mutation	SNP	C	A	A			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr18:6971869C>A	uc002knm.2	-	48	6980	c.6886G>T	c.(6886-6888)GGG>TGG	p.G2296W	LAMA1_uc010wzj.1_Missense_Mutation_p.G1772W	NM_005559	NP_005550	P25391	LAMA1_HUMAN	laminin, alpha 1 precursor	2296	Laminin G-like 1.				axon guidance|cell adhesion|cell surface receptor linked signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	extracellular space|laminin-1 complex|laminin-3 complex	extracellular matrix structural constituent|receptor binding			ovary(8)|large_intestine(4)|upper_aerodigestive_tract(2)|breast(2)|skin(2)|pancreas(2)|central_nervous_system(1)	21		Colorectal(10;0.172)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	CCGAAGCACCCACGGCACTTG	0.433													37	36					6.4771e-29	6.85258e-29	0.117977	1	0
LAMA3	3909	broad.mit.edu	37	18	21487828	21487828	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr18:21487828G>A	uc002kuq.2	+	54	7030	c.6944G>A	c.(6943-6945)AGA>AAA	p.R2315K	LAMA3_uc002kur.2_Missense_Mutation_p.R2259K|LAMA3_uc002kus.3_Missense_Mutation_p.R706K|LAMA3_uc002kut.3_Missense_Mutation_p.R650K	NM_198129	NP_937762	Q16787	LAMA3_HUMAN	laminin alpha 3 subunit isoform 1	2315	Domain II and I.				cell adhesion|epidermis development|hemidesmosome assembly|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|skin(2)|central_nervous_system(1)	11	all_cancers(21;7.81e-05)|all_epithelial(16;4.45e-07)|Lung NSC(20;0.00156)|all_lung(20;0.00508)|Colorectal(14;0.0202)|Ovarian(20;0.17)				Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	GATGTGGAAAGAATTAAGGAC	0.488													62	66					0	0	0.139131	0	0
SS18	6760	broad.mit.edu	37	18	23615801	23615801	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr18:23615801C>T	uc002kvm.2	-	8	1045	c.967G>A	c.(967-969)GAA>AAA	p.E323K	SS18_uc002kvn.2_Intron|SS18_uc010xbf.1_Missense_Mutation_p.E241K|SS18_uc010xbg.1_Intron|SS18_uc010xbh.1_Intron|SS18_uc010xbi.1_Missense_Mutation_p.E300K|SS18_uc010dlz.1_Missense_Mutation_p.E271K	NM_001007559	NP_001007560	Q15532	SSXT_HUMAN	synovial sarcoma translocation, chromosome 18	323	Gln-rich.				positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleus	ligand-dependent nuclear receptor transcription coactivator activity|protein binding		SS18/SSX1(1169)|SS18/SSX2(702)|SS18/SSX4(12)	soft_tissue(1883)|ovary(1)	1884	all_cancers(21;0.000194)|Lung NSC(5;0.000413)|all_lung(6;0.00118)|Ovarian(20;0.124)					ATACCTCCTTCGTAGTAATGT	0.398			T	SSX1| SSX2	synovial sarcoma								4	10					0	0	0.014758	0	0
ASXL3	80816	broad.mit.edu	37	18	31323520	31323520	+	Silent	SNP	C	T	T			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr18:31323520C>T	uc010dmg.1	+	12	3763	c.3708C>T	c.(3706-3708)GTC>GTT	p.V1236V	ASXL3_uc002kxq.2_Silent_p.V943V	NM_030632	NP_085135	Q9C0F0	ASXL3_HUMAN	additional sex combs like 3	1236	Ser-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding			ovary(2)|pancreas(1)	3						AAAATTCTGTCCCTGTATCTG	0.378													21	54					0	0	0.062417	0	0
CCDC11	220136	broad.mit.edu	37	18	47788478	47788478	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr18:47788478G>A	uc002lee.2	-	2	272	c.181C>T	c.(181-183)CGC>TGC	p.R61C		NM_145020	NP_659457	Q96M91	CCD11_HUMAN	coiled-coil domain containing 11	61										ovary(1)|pancreas(1)|skin(1)	3				STAD - Stomach adenocarcinoma(97;2.66e-05)|Colorectal(21;7.57e-05)|Lung(128;0.00932)|READ - Rectum adenocarcinoma(32;0.164)		GCTTTCAAGCGATCCCGCTCA	0.468													51	100					0	0	0.139131	0	0
MALT1	10892	broad.mit.edu	37	18	56376664	56376664	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr18:56376664C>T	uc002lhm.1	+	5	962	c.704C>T	c.(703-705)TCC>TTC	p.S235F	MALT1_uc002lhn.1_Missense_Mutation_p.S235F	NM_006785	NP_006776	Q9UDY8	MALT1_HUMAN	mucosa associated lymphoid tissue lymphoma	235	Ig-like C2-type 2.				activation of NF-kappaB-inducing kinase activity|anti-apoptosis|nuclear export|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interleukin-2 production|positive regulation of NF-kappaB transcription factor activity|positive regulation of phosphorylation|positive regulation of protein ubiquitination|positive regulation of T cell cytokine production|protein oligomerization|proteolysis|T cell receptor signaling pathway	CBM complex|cytosol|nucleus|perinuclear region of cytoplasm	cysteine-type endopeptidase activity|protein self-association|signal transducer activity|ubiquitin-protein ligase activity			ovary(2)|lung(1)|central_nervous_system(1)	4						GAACCAACTTCCCAAAAGCTG	0.363			T	BIRC3	MALT								32	38					0	0	0.080422	0	0
SERPINB2	5055	broad.mit.edu	37	18	61569004	61569004	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr18:61569004C>T	uc010xeu.1	+	7	899	c.566C>T	c.(565-567)TCT>TTT	p.S189F	SERPINB2_uc002ljo.2_Missense_Mutation_p.S189F|SERPINB2_uc010dqh.2_Missense_Mutation_p.S119F|SERPINB2_uc002ljp.1_5'UTR|SERPINB2_uc002ljq.1_5'UTR	NM_001143818	NP_001137290	P05120	PAI2_HUMAN	serine (or cysteine) proteinase inhibitor, clade	189					anti-apoptosis|blood coagulation|fibrinolysis|regulation of proteolysis	extracellular space|Golgi apparatus|plasma membrane	serine-type endopeptidase inhibitor activity			lung(1)|skin(1)	2		Esophageal squamous(42;0.131)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)|Urokinase(DB00013)	CCTGAAGGTTCTGTAGATGGG	0.368													23	53					0	0	0.116897	0	0
EBI3	10148	broad.mit.edu	37	19	4231212	4231212	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr19:4231212C>T	uc002lzu.2	+	2	100	c.92C>T	c.(91-93)CCC>CTC	p.P31L		NM_005755	NP_005746	Q14213	IL27B_HUMAN	Epstein-Barr virus induced 3 precursor	31	Fibronectin type-III 1.				humoral immune response|positive regulation of alpha-beta T cell proliferation|positive regulation of interferon-gamma biosynthetic process|T-helper 1 type immune response	extracellular space|plasma membrane	cytokine activity|cytokine receptor activity				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0336)|STAD - Stomach adenocarcinoma(1328;0.18)		CTGACACTGCCCCGGGTGCAA	0.637													12	26					0	0	0.105934	0	0
MUC16	94025	broad.mit.edu	37	19	9072091	9072091	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr19:9072091G>A	uc002mkp.2	-	3	15559	c.15355C>T	c.(15355-15357)CCT>TCT	p.P5119S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	5121	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TTTATAGAAGGAAAAATTTCC	0.453													11	29					0	0	0.069234	0	0
LPHN1	22859	broad.mit.edu	37	19	14262131	14262131	+	Missense_Mutation	SNP	C	A	A			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr19:14262131C>A	uc010xnn.1	-	24	4275	c.3979G>T	c.(3979-3981)GGT>TGT	p.G1327C	LPHN1_uc010xno.1_Missense_Mutation_p.G1322C|uc002myf.2_Intron	NM_001008701	NP_001008701	O94910	LPHN1_HUMAN	latrophilin 1 isoform 1 precursor	1327	Cytoplasmic (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|sugar binding			ovary(2)|lung(2)|central_nervous_system(1)	5						CGGTCAGCACCCCCGGGCCCG	0.721													4	4					0.00909568	0.0092649	0.009096	1	0
DDX39	10212	broad.mit.edu	37	19	14522376	14522376	+	Missense_Mutation	SNP	A	T	T			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr19:14522376A>T	uc010xnp.1	-	4	416	c.371T>A	c.(370-372)CTG>CAG	p.L124Q	DDX39_uc002myo.2_Missense_Mutation_p.L124Q|DDX39_uc010dzl.2_RNA|DDX39_uc010dzm.1_Missense_Mutation_p.L124Q	NM_005804	NP_005795	O00148	DX39A_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 39	124	Helicase ATP-binding.				mRNA export from nucleus|nuclear mRNA splicing, via spliceosome	nucleus	ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding				0						CTGGAAGGCCAGCTCCCTCGT	0.572													29	50					0	0	0.050027	0	0
USHBP1	83878	broad.mit.edu	37	19	17370518	17370518	+	Silent	SNP	G	A	A			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr19:17370518G>A	uc002nfs.1	-	6	905	c.792C>T	c.(790-792)CCC>CCT	p.P264P	USHBP1_uc002nfr.1_5'Flank|USHBP1_uc002nft.1_RNA|USHBP1_uc010xpk.1_Silent_p.P200P|USHBP1_uc010eam.1_Silent_p.P192P	NM_031941	NP_114147	Q8N6Y0	USBP1_HUMAN	Usher syndrome 1C binding protein 1	264							PDZ domain binding			ovary(1)	1						GCCGAAGCAGGGGGTGAGCCA	0.562													57	40					0	0	0.139131	0	0
CAPNS1	826	broad.mit.edu	37	19	36631958	36631958	+	Silent	SNP	C	G	G			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr19:36631958C>G	uc002odj.2	+	2	202	c.45C>G	c.(43-45)GGC>GGG	p.G15G	CAPNS1_uc002odi.1_Silent_p.G15G|CAPNS1_uc002odk.2_Silent_p.G15G|CAPNS1_uc002odl.2_Silent_p.G15G	NM_001749	NP_001740	P04632	CPNS1_HUMAN	calpain, small subunit 1	15	Gly-rich (hydrophobic).|Poly-Gly.				positive regulation of cell proliferation	cytoplasm|plasma membrane	calcium ion binding|calcium-dependent cysteine-type endopeptidase activity				0	Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.06)			gcggcggcggcgggggaggcg	0.393													3	33					0	0	0.115264	0	0
CYP2S1	29785	broad.mit.edu	37	19	41712370	41712370	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr19:41712370C>T	uc002opw.2	+	9	1547	c.1492C>T	c.(1492-1494)CAC>TAC	p.H498Y	CYP2F1_uc010xvw.1_Intron|CYP2S1_uc010xvx.1_Missense_Mutation_p.H223Y	NM_030622	NP_085125	Q96SQ9	CP2S1_HUMAN	cytochrome P450, family 2, subfamily S,	498					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|retinoic acid 4-hydroxylase activity			skin(1)	1						CACTGACCTTCACTCCACCAC	0.612													61	92					0	0	0.139131	0	0
HNRNPUL1	11100	broad.mit.edu	37	19	41807533	41807533	+	Missense_Mutation	SNP	C	G	G			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr19:41807533C>G	uc002oqb.3	+	11	1900	c.1611C>G	c.(1609-1611)GAC>GAG	p.D537E	CYP2F1_uc010xvw.1_Intron|HNRNPUL1_uc002opz.3_Missense_Mutation_p.D437E|HNRNPUL1_uc002oqa.3_Missense_Mutation_p.D437E|HNRNPUL1_uc010ehm.2_Missense_Mutation_p.D537E|HNRNPUL1_uc002oqc.3_Missense_Mutation_p.D423E|HNRNPUL1_uc002oqe.3_Intron|HNRNPUL1_uc002oqd.3_Missense_Mutation_p.D437E|HNRNPUL1_uc010ehn.2_Missense_Mutation_p.D437E|HNRNPUL1_uc010eho.2_Missense_Mutation_p.D437E|HNRNPUL1_uc010xvy.1_Missense_Mutation_p.D437E|HNRNPUL1_uc010ehp.2_Missense_Mutation_p.D393E|HNRNPUL1_uc002oqf.3_5'Flank	NM_007040	NP_008971	Q9BUJ2	HNRL1_HUMAN	heterogeneous nuclear ribonucleoprotein U-like 1	537	Necessary for interaction with TP53.|Necessary for interaction with BRD7 and transcriptional activation.				nuclear mRNA splicing, via spliceosome|regulation of transcription, DNA-dependent|response to virus|transcription, DNA-dependent	heterogeneous nuclear ribonucleoprotein complex|nucleoplasm	enzyme binding|RNA binding			central_nervous_system(1)|skin(1)	2						CTGACGAGGACCTAAAAGACC	0.463													34	60					0	0	0.059317	0	0
PSG1	5669	broad.mit.edu	37	19	43376067	43376067	+	Silent	SNP	G	A	A			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr19:43376067G>A	uc002ovb.2	-	3	699	c.561C>T	c.(559-561)CTC>CTT	p.L187L	PSG3_uc002ouf.2_Intron|PSG1_uc002oug.1_Silent_p.L187L|PSG11_uc002ouw.2_Intron|PSG7_uc002ous.1_Intron|PSG7_uc002out.1_Intron|PSG10_uc002ouv.1_Intron|PSG1_uc002oun.2_RNA|PSG1_uc002our.1_Silent_p.L187L|PSG1_uc010eio.1_Silent_p.L187L|PSG1_uc002oux.1_Silent_p.L116L|PSG1_uc002ouy.1_Silent_p.L187L|PSG1_uc002ouz.1_Silent_p.L187L|PSG1_uc002ova.1_Intron|PSG1_uc002ovc.2_Intron|PSG1_uc002ovd.1_Silent_p.L187L	NM_006905	NP_008836	P11464	PSG1_HUMAN	pregnancy specific beta-1-glycoprotein 1	187	Ig-like C2-type 1.				female pregnancy	extracellular region				ovary(2)	2		Prostate(69;0.00682)				GAGTCATAGGGAGGCTCTGAC	0.502													105	221					0	0	0.139131	0	0
FKRP	79147	broad.mit.edu	37	19	47258849	47258849	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr19:47258849C>T	uc002pfn.2	+	4	439	c.142C>T	c.(142-144)CGT>TGT	p.R48C	FKRP_uc002pfp.2_Missense_Mutation_p.R48C	NM_024301	NP_077277	Q9H9S5	FKRP_HUMAN	fukutin-related protein	48						extracellular space|Golgi apparatus|rough endoplasmic reticulum|sarcolemma	transferase activity			pancreas(1)	1		all_epithelial(76;5.08e-05)|Ovarian(192;0.0129)|all_neural(266;0.0459)|Breast(70;0.212)		OV - Ovarian serous cystadenocarcinoma(262;0.000541)|all cancers(93;0.00128)|Epithelial(262;0.0207)|GBM - Glioblastoma multiforme(486;0.0336)		TGCCGGCCCCCGTGTCACCGT	0.662													5	7					0	0	0.014758	0	0
VN1R2	317701	broad.mit.edu	37	19	53761967	53761967	+	Silent	SNP	C	T	T			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr19:53761967C>T	uc002qbi.2	+	1	423	c.339C>T	c.(337-339)TTC>TTT	p.F113F		NM_173856	NP_776255	Q8NFZ6	VN1R2_HUMAN	vomeronasal 1 receptor 2	113	Helical; Name=2; (Potential).				response to pheromone	integral to membrane|plasma membrane	pheromone receptor activity				0				GBM - Glioblastoma multiforme(134;0.00301)		ATTATATGTTCCTTTACTTTA	0.313													20	25					0	0	0.062417	0	0
PRKCG	5582	broad.mit.edu	37	19	54385842	54385842	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr19:54385842G>A	uc002qcq.1	+	1	376	c.94G>A	c.(94-96)GAA>AAA	p.E32K	PRKCG_uc010eqz.1_Missense_Mutation_p.E32K|PRKCG_uc010yef.1_Missense_Mutation_p.E32K|PRKCG_uc010yeg.1_Missense_Mutation_p.E32K|PRKCG_uc010yeh.1_5'Flank	NM_002739	NP_002730	P05129	KPCG_HUMAN	protein kinase C, gamma	32					activation of phospholipase C activity|cell death|intracellular signal transduction|negative regulation of protein catabolic process|negative regulation of protein ubiquitination|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of mismatch repair|synaptic transmission	cytosol	ATP binding|protein kinase C activity|zinc ion binding			lung(4)|ovary(2)|pancreas(2)|large_intestine(1)	9	all_cancers(19;0.0462)|all_epithelial(19;0.0258)|all_lung(19;0.185)|Ovarian(34;0.19)|Lung NSC(19;0.218)			GBM - Glioblastoma multiforme(134;0.0521)		GGTGGTCCACGAAGTCAAGAG	0.642													56	85					0	0	0.139131	0	0
NLRP11	204801	broad.mit.edu	37	19	56321459	56321459	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr19:56321459C>T	uc010ygf.1	-	5	1228	c.517G>A	c.(517-519)GGT>AGT	p.G173S	NLRP11_uc002qlz.2_Missense_Mutation_p.G74S|NLRP11_uc002qmb.2_Missense_Mutation_p.G74S|NLRP11_uc002qmc.2_RNA|NLRP11_uc010ete.1_RNA	NM_145007	NP_659444	P59045	NAL11_HUMAN	NLR family, pyrin domain containing 11	173	NACHT.						ATP binding			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6		Colorectal(82;0.0002)		GBM - Glioblastoma multiforme(193;0.0325)		CACATCTCACCCTTGATCCAC	0.453													15	22					0	0	0.132662	0	0
APOB	338	broad.mit.edu	37	2	21228367	21228367	+	Silent	SNP	G	A	A			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr2:21228367G>A	uc002red.2	-	26	11501	c.11373C>T	c.(11371-11373)TTC>TTT	p.F3791F		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	3791					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	CAACTTCAGGGAATTTTACCT	0.403													69	112					0	0	0.139131	0	0
UBXN2A	165324	broad.mit.edu	37	2	24194250	24194250	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr2:24194250C>T	uc010exy.2	+	4	614	c.146C>T	c.(145-147)TCC>TTC	p.S49F	UBXN2A_uc002rem.2_RNA|UBXN2A_uc002ren.2_Missense_Mutation_p.S49F|UBXN2A_uc010ykj.1_Missense_Mutation_p.S49F	NM_181713	NP_859064	P68543	UBX2A_HUMAN	UBX domain containing 4	49											0						AAGGTTAGTTCCAAATGTGTG	0.313													44	73					0	0	0.139131	0	0
FEZ2	9637	broad.mit.edu	37	2	36808483	36808483	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr2:36808483G>A	uc002rph.2	-	4	631	c.584C>T	c.(583-585)TCC>TTC	p.S195F	FEZ2_uc002rpe.2_Missense_Mutation_p.S24F|FEZ2_uc002rpf.2_Missense_Mutation_p.S24F|FEZ2_uc002rpg.2_Missense_Mutation_p.S195F|FEZ2_uc002rpi.2_Missense_Mutation_p.S50F|FEZ2_uc002rpj.2_Missense_Mutation_p.S195F	NM_005102	NP_005093	Q9UHY8	FEZ2_HUMAN	zygin 2 isoform 1	195					axon guidance|signal transduction		protein binding			ovary(1)	1		all_hematologic(82;0.21)				AATTTCCTGGGAAAGCATTGA	0.418													60	123					0	0	0.139131	0	0
SLC8A1	6546	broad.mit.edu	37	2	40657293	40657293	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr2:40657293C>T	uc002rrx.2	-	1	152	c.128G>A	c.(127-129)GGA>GAA	p.G43E	SLC8A1_uc002rry.2_Missense_Mutation_p.G43E|SLC8A1_uc002rrz.2_Missense_Mutation_p.G43E|SLC8A1_uc002rsa.2_Missense_Mutation_p.G43E|SLC8A1_uc002rsd.3_Missense_Mutation_p.G43E|SLC8A1_uc002rsb.1_Missense_Mutation_p.G43E|SLC8A1_uc010fan.1_Missense_Mutation_p.G43E|SLC8A1_uc002rsc.1_Missense_Mutation_p.G43E	NM_021097	NP_066920	P32418	NAC1_HUMAN	solute carrier family 8 (sodium/calcium	43	Extracellular (Potential).				cell communication|muscle contraction|platelet activation	integral to plasma membrane	calcium:sodium antiporter activity|calmodulin binding|heat shock protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4					Alpha-Linolenic Acid(DB00132)|Icosapent(DB00159)	AGTTTCATTTCCTTCTCCTTC	0.413													38	73					0	0	0.124865	0	0
LHCGR	3973	broad.mit.edu	37	2	48915278	48915278	+	Missense_Mutation	SNP	A	G	G			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr2:48915278A>G	uc002rwu.3	-	11	1728	c.1658T>C	c.(1657-1659)GTT>GCT	p.V553A	GTF2A1L_uc002rwt.2_Intron	NM_000233	NP_000224	P22888	LSHR_HUMAN	luteinizing hormone/choriogonadotropin receptor	553	Cytoplasmic (Potential).				male genitalia development|male gonad development	endosome|integral to plasma membrane	luteinizing hormone receptor activity			ovary(3)|lung(2)|breast(2)|skin(1)	8		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.176)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)		Cetrorelix(DB00050)|Choriogonadotropin alfa(DB00097)|Goserelin(DB00014)|Lutropin alfa(DB00044)|Menotropins(DB00032)	TGGGTTTCGAACTGCAAAATA	0.373									Familial_Male-Limited_Precocious_Puberty				33	61					0	0	0.054565	0	0
ALMS1	7840	broad.mit.edu	37	2	73680996	73680996	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr2:73680996C>T	uc002sje.1	+	10	7456	c.7345C>T	c.(7345-7347)CCA>TCA	p.P2449S	ALMS1_uc002sjf.1_Missense_Mutation_p.P2405S|ALMS1_uc002sjg.2_Missense_Mutation_p.P1835S|ALMS1_uc002sjh.1_Missense_Mutation_p.P1835S	NM_015120	NP_055935	Q8TCU4	ALMS1_HUMAN	Alstrom syndrome 1	2447					G2/M transition of mitotic cell cycle	centrosome|cilium|cytosol|microtubule basal body|spindle pole				skin(3)|ovary(2)|breast(2)|pancreas(1)|lung(1)	9						AAACTTCTTTCCATATGTTTC	0.448													18	32					0	0	0.033300	0	0
FUNDC2P2	388965	broad.mit.edu	37	2	84518287	84518287	+	Silent	SNP	G	A	A			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr2:84518287G>A	uc010ffz.1	+	1	482	c.345G>A	c.(343-345)CAG>CAA	p.Q115Q		NR_003663				RecName: Full=FUN14 domain-containing protein 2; AltName: Full=Hepatitis C virus core-binding protein 6; AltName: Full=Cervical cancer proto-oncogene 3 protein;          Short=HCC-3;												0						AGAGCACTCAGATACCTAACC	0.468													28	64					0	0	0.125774	0	0
IL18RAP	8807	broad.mit.edu	37	2	103067483	103067483	+	Splice_Site	SNP	T	C	C			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr2:103067483T>C	uc002tbx.2	+	11	1868	c.1384_splice	c.e11+2	p.V462_splice	IL18RAP_uc010fiz.2_Splice_Site_p.V320_splice	NM_003853	NP_003844	O95256	I18RA_HUMAN	interleukin 18 receptor accessory protein						cell surface receptor linked signaling pathway|inflammatory response|innate immune response	integral to membrane	transmembrane receptor activity			skin(3)|ovary(2)	5						CAGGAGGAGGTAAGTCCAACA	0.408													16	30					0	0	0.146539	0	0
SLC9A2	6549	broad.mit.edu	37	2	103300793	103300793	+	Silent	SNP	C	T	T			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr2:103300793C>T	uc002tca.2	+	5	1565	c.1423C>T	c.(1423-1425)CTG>TTG	p.L475L		NM_003048	NP_003039	Q9UBY0	SL9A2_HUMAN	solute carrier family 9 (sodium/hydrogen	475	Helical; Name=M13; (Potential).					integral to membrane|plasma membrane	sodium:hydrogen antiporter activity			central_nervous_system(3)|skin(3)|breast(2)	8						TGTCTTCATTCTGGTAAGTAG	0.388													57	85					0	0	0.139131	0	0
FAP	2191	broad.mit.edu	37	2	163076404	163076404	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr2:163076404G>A	uc002ucd.2	-	7	653	c.445C>T	c.(445-447)CCA>TCA	p.P149S	FAP_uc010zct.1_Missense_Mutation_p.P124S|FAP_uc010fpd.2_Intron|FAP_uc010fpe.1_Missense_Mutation_p.P116S	NM_004460	NP_004451	Q12884	SEPR_HUMAN	fibroblast activation protein, alpha subunit	149	Extracellular (Potential).				endothelial cell migration|negative regulation of extracellular matrix disassembly|proteolysis	cell junction|integral to membrane|invadopodium membrane|lamellipodium membrane	dipeptidyl-peptidase activity|metalloendopeptidase activity|protein homodimerization activity|serine-type endopeptidase activity			ovary(3)	3						TACTGAATTGGACGAGGAAGC	0.313													25	27					0	0	0.125774	0	0
TTN	7273	broad.mit.edu	37	2	179403940	179403940	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr2:179403940C>T	uc010zfg.1	-	302	91242	c.91018G>A	c.(91018-91020)GAT>AAT	p.D30340N	uc002umo.2_RNA|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.D24035N|TTN_uc010zfi.1_Missense_Mutation_p.D23968N|TTN_uc010zfj.1_Missense_Mutation_p.D23843N	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	31267							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTGGTTACATCGAGTACTTCT	0.443													20	23					0	0	0.049695	0	0
TTN	7273	broad.mit.edu	37	2	179517218	179517218	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr2:179517218G>A	uc010zfg.1	-	156	32016	c.31792C>T	c.(31792-31794)CCT>TCT	p.P10598S	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc010fre.1_Intron|TTN_uc002umw.1_5'Flank|TTN_uc002umx.1_5'Flank	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	11525							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTTTTAGGAGGAGCCGCTGGC	0.388													36	73					0	0	0.131918	0	0
TTN	7273	broad.mit.edu	37	2	179588843	179588843	+	Missense_Mutation	SNP	C	T	T	rs148072021	by1000genomes	TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr2:179588843C>T	uc010zfg.1	-	70	17635	c.17411G>A	c.(17410-17412)CGA>CAA	p.R5804Q	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.R2465Q	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	6731							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTTCAGTCTTCGTGTGAAAGA	0.418													6	19					0	0	0.038147	0	0
TTN	7273	broad.mit.edu	37	2	179594659	179594659	+	Silent	SNP	G	A	A			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr2:179594659G>A	uc010zfg.1	-	60	14813	c.14589C>T	c.(14587-14589)TTC>TTT	p.F4863F	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.F1524F	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	5790							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GCTTCTTAATGAATTGAGGAG	0.428													7	7					0	0	0.029380	0	0
TTN	7273	broad.mit.edu	37	2	179600503	179600503	+	Silent	SNP	G	A	A			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr2:179600503G>A	uc010zfg.1	-	47	11162	c.10938C>T	c.(10936-10938)TTC>TTT	p.F3646F	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.F307F	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	4573							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATTCTTTAATGAAATGTGGCT	0.413													9	22					0	0	0.058154	0	0
ZNF804A	91752	broad.mit.edu	37	2	185801324	185801324	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr2:185801324C>T	uc002uph.2	+	4	1795	c.1201C>T	c.(1201-1203)CCT>TCT	p.P401S		NM_194250	NP_919226	Q7Z570	Z804A_HUMAN	zinc finger protein 804A	401						intracellular	zinc ion binding			ovary(6)|skin(3)|large_intestine(1)|pancreas(1)	11						GACATTGGCCCCTTCAAATAC	0.383													28	47					0	0	0.099896	0	0
Unknown	0	broad.mit.edu	37	2	190788435	190788435	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr2:190788435G>A	uc002uro.2	+	1	517	c.374G>A	c.(373-375)AGT>AAT	p.S125N						SubName: Full=cDNA FLJ54127, highly similar to Heterogeneous nuclear ribonucleoproteins C;																		AGGATGTACAGTTACCCAGCA	0.498													23	43					0	0	0.062417	0	0
NRP2	8828	broad.mit.edu	37	2	206614461	206614461	+	Missense_Mutation	SNP	C	T	T	rs140796876	byFrequency	TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr2:206614461C>T	uc002vaw.2	+	11	2590	c.1799C>T	c.(1798-1800)ACG>ATG	p.T600M	NRP2_uc002vau.2_Missense_Mutation_p.T600M|NRP2_uc002vav.2_Missense_Mutation_p.T600M|NRP2_uc002vax.2_Missense_Mutation_p.T600M|NRP2_uc002vay.2_Missense_Mutation_p.T600M	NM_201266	NP_957718	O60462	NRP2_HUMAN	neuropilin 2 isoform 1 precursor	600	Extracellular (Potential).				angiogenesis|axon guidance|cell adhesion	integral to membrane|membrane fraction|plasma membrane	heparin binding|metal ion binding|semaphorin receptor activity|vascular endothelial growth factor receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4						TCCAAGCCCACGGTAGAGACG	0.547													3	72					0	0	0.009096	0	0
STK11IP	114790	broad.mit.edu	37	2	220476375	220476375	+	Silent	SNP	C	T	T			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr2:220476375C>T	uc002vml.2	+	18	2230	c.2187C>T	c.(2185-2187)CTC>CTT	p.L729L		NM_052902	NP_443134	Q8N1F8	S11IP_HUMAN	LKB1 interacting protein	729					protein localization	cytoplasm	protein kinase binding			ovary(1)	1		Renal(207;0.0183)		Epithelial(149;2.69e-07)|all cancers(144;5.91e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		TGGTTCTCCTCGCTGTGTCTC	0.622													71	133					0	0	0.139131	0	0
SIRPB1	10326	broad.mit.edu	37	20	1552515	1552515	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr20:1552515C>T	uc010gai.2	-	3	701	c.602G>A	c.(601-603)GGA>GAA	p.G201E	SIRPB1_uc002wfk.3_Intron	NM_006065	NP_006056	O00241	SIRB1_HUMAN	signal-regulatory protein beta 1 isoform 1	201	Ig-like C1-type 1.|Extracellular (Potential).				cell junction assembly|cell surface receptor linked signaling pathway	integral to plasma membrane	protein binding			ovary(1)	1						CACACTGTCTCCTGCGGGGTC	0.557													69	101					0	0	0.139131	0	0
DSN1	79980	broad.mit.edu	37	20	35399564	35399564	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr20:35399564G>A	uc010gfr.2	-	3	440	c.67C>T	c.(67-69)CAT>TAT	p.H23Y	DSN1_uc002xfz.2_Missense_Mutation_p.H23Y|DSN1_uc002xfy.3_Intron|DSN1_uc002xga.2_Missense_Mutation_p.H23Y|DSN1_uc010zvs.1_Intron|DSN1_uc002xgc.2_Missense_Mutation_p.H7Y|DSN1_uc002xgb.2_Missense_Mutation_p.H7Y	NM_001145316	NP_001138788	Q9H410	DSN1_HUMAN	DSN1, MIND kinetochore complex component,	23					cell division|chromosome segregation|mitotic prometaphase	cytosol|MIS12/MIND type complex|nucleus	protein binding			ovary(2)	2		Myeloproliferative disorder(115;0.00874)				TCCAATTGATGATCATGAGTC	0.393													75	101					0	0	0.139131	0	0
SUMO1P1	391257	broad.mit.edu	37	20	52491925	52491925	+	RNA	SNP	G	A	A			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr20:52491925G>A	uc010gik.2	-	1		c.324C>T				NR_002189				Homo sapiens SUMO1 pseudogene 1, mRNA (cDNA clone IMAGE:6619211).												0						GAATTCACTGGAACGCCCTGT	0.418													12	12					0	0	0.080935	0	0
LAMA5	3911	broad.mit.edu	37	20	60897344	60897344	+	Silent	SNP	G	A	A			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr20:60897344G>A	uc002ycq.2	-	47	6394	c.6327C>T	c.(6325-6327)CTC>CTT	p.L2109L		NM_005560	NP_005551	O15230	LAMA5_HUMAN	laminin alpha 5 precursor	2109	Laminin EGF-like 21.				angiogenesis|cell proliferation|cell recognition|cytoskeleton organization|endothelial cell differentiation|focal adhesion assembly|integrin-mediated signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development|substrate adhesion-dependent cell spreading	extracellular space|laminin-1 complex|laminin-10 complex|laminin-11 complex	integrin binding			ovary(1)|pancreas(1)|skin(1)	3	Breast(26;1.57e-08)		BRCA - Breast invasive adenocarcinoma(19;4.36e-06)		Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	CCTGCTCAGGGAGCCCCCAGT	0.697													6	12					0	0	0.029380	0	0
ABCG1	9619	broad.mit.edu	37	21	43708014	43708014	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr21:43708014C>T	uc002zaq.2	+	9	1095	c.989C>T	c.(988-990)TCC>TTC	p.S330F	ABCG1_uc002zan.2_Missense_Mutation_p.S332F|ABCG1_uc002zam.2_Missense_Mutation_p.S308F|ABCG1_uc002zao.2_Missense_Mutation_p.S327F|ABCG1_uc002zap.2_Missense_Mutation_p.S330F|ABCG1_uc002zar.2_Missense_Mutation_p.S341F|ABCG1_uc011aev.1_Missense_Mutation_p.S341F|ABCG1_uc010gpb.1_5'UTR	NM_004915	NP_004906	P45844	ABCG1_HUMAN	ATP-binding cassette sub-family G member 1	330	Cytoplasmic (Potential).				amyloid precursor protein catabolic process|cholesterol efflux|cholesterol homeostasis|cholesterol metabolic process|detection of hormone stimulus|high-density lipoprotein particle remodeling|intracellular cholesterol transport|lipoprotein metabolic process|low-density lipoprotein particle remodeling|negative regulation of cholesterol storage|negative regulation of macrophage derived foam cell differentiation|phospholipid efflux|phospholipid homeostasis|positive regulation of cholesterol biosynthetic process|regulation of cholesterol esterification|regulation of transcription, DNA-dependent|response to lipid|reverse cholesterol transport	endoplasmic reticulum membrane|external side of plasma membrane|Golgi membrane|recycling endosome	ADP binding|ATP binding|cholesterol transporter activity|glycoprotein transporter activity|phospholipid transporter activity|protein heterodimerization activity|protein homodimerization activity|sterol-transporting ATPase activity|toxin transporter activity			ovary(2)|central_nervous_system(1)	3					Adenosine triphosphate(DB00171)	GAGGTTGCATCCGGCGAGTAC	0.602													14	427					0	0	0.105934	0	0
KRTAP10-11	386678	broad.mit.edu	37	21	46067170	46067170	+	Silent	SNP	C	T	T			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr21:46067170C>T	uc002zfr.3	+	1	840	c.795C>T	c.(793-795)TCC>TCT	p.S265S	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198692	NP_941965	P60412	KR10B_HUMAN	keratin associated protein 10-11	265	25 X 5 AA repeats of C-C-X(3).					keratin filament				ovary(1)	1						CCTGCCAGTCCAGCTGCTGCC	0.692													44	87					0	0	0.139131	0	0
CCT8L2	150160	broad.mit.edu	37	22	17073037	17073037	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr22:17073037G>A	uc002zlp.1	-	1	664	c.404C>T	c.(403-405)GCC>GTC	p.A135V		NM_014406	NP_055221	Q96SF2	TCPQM_HUMAN	T-complex protein 1	135					cellular protein metabolic process	cytoplasm	anion channel activity|ATP binding|calcium-activated potassium channel activity			ovary(1)	1	all_hematologic(4;0.00567)|Acute lymphoblastic leukemia(84;0.0977)	all_epithelial(15;0.0157)|Lung NSC(13;0.147)|all_lung(157;0.175)				CGTGGCGTAGGCCTCCCGGAG	0.657													41	14					0	0	0.104719	0	0
SEZ6L	23544	broad.mit.edu	37	22	26771641	26771641	+	Silent	SNP	C	T	T			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr22:26771641C>T	uc003acb.2	+	15	3084	c.2928C>T	c.(2926-2928)TAC>TAT	p.Y976Y	SEZ6L_uc003acc.2_Silent_p.Y975Y|SEZ6L_uc011akc.1_Silent_p.Y965Y|SEZ6L_uc003acd.2_Silent_p.Y901Y|SEZ6L_uc011akd.1_Silent_p.Y963Y|SEZ6L_uc003ace.2_Silent_p.Y900Y|SEZ6L_uc003acf.1_Silent_p.Y748Y|SEZ6L_uc010gvc.1_Silent_p.Y672Y|SEZ6L_uc011ake.1_Intron	NM_021115	NP_066938	Q9BYH1	SE6L1_HUMAN	seizure related 6 homolog (mouse)-like	976	Helical; (Potential).					endoplasmic reticulum membrane|integral to membrane				ovary(4)|central_nervous_system(1)|pancreas(1)	6						GAGGAGCCTACATTTACATCA	0.582													16	5					0	0	0.132662	0	0
VGLL4	9686	broad.mit.edu	37	3	11600050	11600050	+	Missense_Mutation	SNP	A	G	G			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr3:11600050A>G	uc003bwf.2	-	6	1219	c.853T>C	c.(853-855)TCC>CCC	p.S285P	VGLL4_uc010hdx.1_Missense_Mutation_p.S291P|VGLL4_uc003bwg.2_Missense_Mutation_p.S290P|VGLL4_uc010hdv.1_Missense_Mutation_p.S201P|VGLL4_uc010hdw.1_Missense_Mutation_p.S205P|VGLL4_uc011aun.1_Missense_Mutation_p.S226P	NM_014667	NP_055482	Q14135	VGLL4_HUMAN	vestigial like 4 isoform b	285					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus				ovary(1)	1				LUSC - Lung squamous cell carcinoma(1;0.089)|Lung(1;0.111)		ACAGAGGGGGAGTGACTGTGG	0.577													3	99					0	0	0.009096	0	0
Unknown	0	broad.mit.edu	37	3	12299525	12299525	+	RNA	SNP	C	T	T			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr3:12299525C>T	uc003bwp.1	-	1		c.428G>A				NR_003112				NR_003112																		ATGGCCACTTCCCCAGAAACT	0.483													12	32					0	0	0.119110	0	0
PLCL2	23228	broad.mit.edu	37	3	17109501	17109501	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr3:17109501G>A	uc011awc.1	+	8	3229	c.3124G>A	c.(3124-3126)GAA>AAA	p.E1042K	PLCL2_uc011awd.1_Missense_Mutation_p.E924K	NM_001144382	NP_001137854	Q9UPR0	PLCL2_HUMAN	phospholipase C-like 2 isoform 1	1050					intracellular signal transduction|lipid metabolic process	cytoplasm	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(2)|ovary(1)|lung(1)	4						AGGTTTGAAGGAAAGAAAACT	0.383													27	62					0	0	0.054565	0	0
LRRC3B	116135	broad.mit.edu	37	3	26751472	26751472	+	Silent	SNP	C	T	T			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr3:26751472C>T	uc003cdp.2	+	2	898	c.309C>T	c.(307-309)ATC>ATT	p.I103I	LRRC3B_uc003cdq.2_Silent_p.I103I	NM_052953	NP_443185	Q96PB8	LRC3B_HUMAN	leucine rich repeat containing 3B precursor	103	LRR 2.					integral to membrane				pancreas(2)|ovary(1)|skin(1)	4						TTGAGTTTATCGATGAGCATG	0.418													22	32					0	0	0.099896	0	0
PDZRN3	23024	broad.mit.edu	37	3	73453542	73453542	+	Missense_Mutation	SNP	T	C	C			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr3:73453542T>C	uc003dpl.1	-	4	1019	c.923A>G	c.(922-924)AAC>AGC	p.N308S	PDZRN3_uc011bgh.1_5'UTR|PDZRN3_uc010hoe.1_Missense_Mutation_p.N6S|PDZRN3_uc011bgf.1_Missense_Mutation_p.N25S|PDZRN3_uc011bgg.1_Missense_Mutation_p.N28S	NM_015009	NP_055824	Q9UPQ7	PZRN3_HUMAN	PDZ domain containing ring finger 3	308	PDZ 1.						ubiquitin-protein ligase activity|zinc ion binding			pancreas(2)|ovary(2)|skin(2)|large_intestine(1)	7		Prostate(10;0.114)|Lung NSC(201;0.187)|Lung SC(41;0.236)		BRCA - Breast invasive adenocarcinoma(55;0.00041)|Epithelial(33;0.0023)|LUSC - Lung squamous cell carcinoma(21;0.0048)|Lung(16;0.0105)|KIRC - Kidney renal clear cell carcinoma(39;0.111)|Kidney(39;0.134)		GTCTCTGCCGTTGACCTGTGG	0.458													24	44					0	0	0.099896	0	0
TMEM39A	55254	broad.mit.edu	37	3	119165985	119165985	+	Missense_Mutation	SNP	T	C	C			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr3:119165985T>C	uc003eck.1	-	5	818	c.455A>G	c.(454-456)TAC>TGC	p.Y152C	TMEM39A_uc003ecl.1_5'UTR	NM_018266	NP_060736	Q9NV64	TM39A_HUMAN	transmembrane protein 39A	152						integral to membrane				ovary(1)|breast(1)	2				GBM - Glioblastoma multiforme(114;0.244)		CAGAACCATGTAGTGAATCAT	0.408													24	44					0	0	0.134883	0	0
ATP2C1	27032	broad.mit.edu	37	3	130659495	130659495	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr3:130659495C>T	uc003enl.2	+	7	604	c.382C>T	c.(382-384)CTT>TTT	p.L128F	ATP2C1_uc011blg.1_Missense_Mutation_p.L162F|ATP2C1_uc011blh.1_Missense_Mutation_p.L123F|ATP2C1_uc011bli.1_Missense_Mutation_p.L162F|ATP2C1_uc003enk.2_Missense_Mutation_p.L112F|ATP2C1_uc003enm.2_Missense_Mutation_p.L128F|ATP2C1_uc003enn.2_Missense_Mutation_p.L112F|ATP2C1_uc003eno.2_Missense_Mutation_p.L128F|ATP2C1_uc003enp.2_Missense_Mutation_p.L128F|ATP2C1_uc003enq.2_Missense_Mutation_p.L128F|ATP2C1_uc003enr.2_Missense_Mutation_p.L128F|ATP2C1_uc003ens.2_Missense_Mutation_p.L128F|ATP2C1_uc003ent.2_Missense_Mutation_p.L128F	NM_014382	NP_055197	P98194	AT2C1_HUMAN	calcium-transporting ATPase 2C1 isoform 1a	128	Cytoplasmic (By similarity).				actin cytoskeleton reorganization|ATP biosynthetic process|calcium-dependent cell-cell adhesion|cellular calcium ion homeostasis|cellular manganese ion homeostasis|epidermis development|Golgi calcium ion homeostasis|Golgi calcium ion transport|positive regulation of I-kappaB kinase/NF-kappaB cascade	Golgi apparatus|Golgi membrane|integral to membrane|trans-Golgi network	ATP binding|ATP binding|calcium ion binding|calcium-transporting ATPase activity|manganese ion binding|manganese-transporting ATPase activity|metal ion binding|signal transducer activity			skin(1)	1					Arsenic trioxide(DB01169)|Desflurane(DB01189)|Enflurane(DB00228)|Halothane(DB01159)|Isoflurane(DB00753)|Methoxyflurane(DB01028)|Miconazole(DB01110)|Sevoflurane(DB01236)	AGAAAAATCTCTTGAAGAATT	0.303									Hailey-Hailey_disease				9	23					0	0	0.093190	0	0
EPHB1	2047	broad.mit.edu	37	3	134911606	134911606	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr3:134911606C>T	uc003eqt.2	+	11	2291	c.2071C>T	c.(2071-2073)CGG>TGG	p.R691W	EPHB1_uc003equ.2_Missense_Mutation_p.R252W	NM_004441	NP_004432	P54762	EPHB1_HUMAN	ephrin receptor EphB1 precursor	691	Cytoplasmic (Potential).|Protein kinase.					integral to plasma membrane	ATP binding|ephrin receptor activity|protein binding			lung(11)|ovary(6)|stomach(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|pancreas(1)	30						CACCAAGAGTCGGCCTGTCAT	0.527													38	44					0	0	0.111260	0	0
LRRC33	375387	broad.mit.edu	37	3	196387641	196387641	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr3:196387641G>A	uc003fwv.2	+	3	1231	c.1127G>A	c.(1126-1128)GGA>GAA	p.G376E		NM_198565	NP_940967	Q86YC3	LRC33_HUMAN	leucine rich repeat containing 33 precursor	376	Extracellular (Potential).					integral to membrane				ovary(2)|central_nervous_system(1)	3	all_cancers(143;8.88e-09)|Ovarian(172;0.0634)|Breast(254;0.135)		Epithelial(36;1.9e-23)|all cancers(36;1.76e-21)|OV - Ovarian serous cystadenocarcinoma(49;1.5e-18)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(46;0.00326)		GAGCCCCCCGGAGCGCTCACC	0.642													37	88					0	0	0.069456	0	0
GAK	2580	broad.mit.edu	37	4	860873	860873	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr4:860873G>A	uc003gbm.3	-	21	2942	c.2743C>T	c.(2743-2745)CTT>TTT	p.L915F	GAK_uc003gbn.3_Missense_Mutation_p.L836F|GAK_uc010ibk.1_Missense_Mutation_p.L809F|GAK_uc010ibi.2_Missense_Mutation_p.L96F|GAK_uc010ibj.2_RNA|GAK_uc003gbl.3_Missense_Mutation_p.L779F	NM_005255	NP_005246	O14976	GAK_HUMAN	cyclin G associated kinase	915					cell cycle	focal adhesion|Golgi apparatus|perinuclear region of cytoplasm	ATP binding|heat shock protein binding|protein serine/threonine kinase activity			lung(2)|central_nervous_system(1)|skin(1)	4				Colorectal(103;0.219)		GGGGGCCCAAGGAGGCAGCTG	0.736													14	21					0	0	0.119110	0	0
PROM1	8842	broad.mit.edu	37	4	15989294	15989294	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr4:15989294C>T	uc003goo.2	-	19	2334	c.2122G>A	c.(2122-2124)GGA>AGA	p.G708R	PROM1_uc003gor.2_Missense_Mutation_p.G708R|PROM1_uc003gos.2_Missense_Mutation_p.G699R|PROM1_uc003got.2_Missense_Mutation_p.G708R|PROM1_uc003gou.2_Missense_Mutation_p.G699R|PROM1_uc003gop.2_Missense_Mutation_p.G699R|PROM1_uc003goq.3_Missense_Mutation_p.G699R	NM_006017	NP_006008	O43490	PROM1_HUMAN	prominin 1 isoform 1	708	Extracellular (Potential).				camera-type eye photoreceptor cell differentiation|photoreceptor cell maintenance|retina layer formation	apical plasma membrane|cell surface|integral to plasma membrane|microvillus membrane|photoreceptor outer segment membrane|plasma membrane	beta-actinin binding|cadherin binding			ovary(3)|upper_aerodigestive_tract(1)|lung(1)|kidney(1)|central_nervous_system(1)	7						ACCAACAATCCATTCCCTGTG	0.358													57	86					0	0	0.139131	0	0
KDR	3791	broad.mit.edu	37	4	55972864	55972864	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr4:55972864C>T	uc003has.2	-	11	1828	c.1526G>A	c.(1525-1527)GGA>GAA	p.G509E	KDR_uc003hat.1_Missense_Mutation_p.G509E|KDR_uc011bzx.1_Missense_Mutation_p.G509E	NM_002253	NP_002244	P35968	VGFR2_HUMAN	kinase insert domain receptor precursor	509	Ig-like C2-type 5.|Extracellular (Potential).				angiogenesis|cell differentiation|interspecies interaction between organisms|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of focal adhesion assembly|positive regulation of positive chemotaxis|regulation of cell shape	integral to plasma membrane	ATP binding|growth factor binding|Hsp90 protein binding|integrin binding|receptor signaling protein tyrosine kinase activity|vascular endothelial growth factor receptor activity			lung(16)|soft_tissue(4)|central_nervous_system(4)|large_intestine(2)|stomach(2)|skin(2)|ovary(2)|kidney(1)	33	all_cancers(7;0.0255)|all_lung(4;0.00175)|Lung NSC(11;0.00384)|all_epithelial(27;0.034)|Glioma(25;0.08)|all_neural(26;0.101)		Epithelial(7;0.189)		Sorafenib(DB00398)|Sunitinib(DB01268)	TTTGTTTTTTCCTTCAATTAG	0.323			Mis		NSCLC|angiosarcoma				Familial_Infantile_Hemangioma	TSP Lung(20;0.16)			10	22					0	0	0.080935	0	0
TMPRSS11F	389208	broad.mit.edu	37	4	68934443	68934443	+	Silent	SNP	C	T	T			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr4:68934443C>T	uc003hdt.1	-	7	697	c.648G>A	c.(646-648)GGG>GGA	p.G216G	LOC550112_uc003hdl.3_Intron|uc011cak.1_Intron	NM_207407	NP_997290	Q6ZWK6	TM11F_HUMAN	transmembrane protease, serine 11F	216	Peptidase S1.|Extracellular (Potential).				proteolysis	extracellular region|integral to plasma membrane	serine-type endopeptidase activity			ovary(1)	1						ATGGCCATTCCCCTTCCATAG	0.522													33	54					0	0	0.054565	0	0
C4orf35	85438	broad.mit.edu	37	4	71201637	71201637	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr4:71201637G>A	uc003hff.2	+	1	967	c.881G>A	c.(880-882)GGA>GAA	p.G294E		NM_033122	NP_149113	Q96KC9	CABS1_HUMAN	testis development protein NYD-SP26	294						flagellum	calcium ion binding				0		all_hematologic(202;0.196)				ACTACCGAGGGAGCCAGTATT	0.423													24	57					0	0	0.083992	0	0
FAT4	79633	broad.mit.edu	37	4	126328204	126328204	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr4:126328204G>A	uc003ifj.3	+	3	5477	c.5477G>A	c.(5476-5478)AGA>AAA	p.R1826K	FAT4_uc011cgp.1_Missense_Mutation_p.R124K	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	1826	Cadherin 17.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						TCGGATATGAGAATTAATATC	0.473													55	97					0	0	0.139131	0	0
F11	2160	broad.mit.edu	37	4	187206838	187206838	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr4:187206838C>T	uc003iza.1	+	12	1684	c.1351C>T	c.(1351-1353)CAA>TAA	p.Q451*		NM_000128	NP_000119	P03951	FA11_HUMAN	coagulation factor XI precursor	451	Peptidase S1.				blood coagulation, intrinsic pathway|plasminogen activation|positive regulation of fibrinolysis	extracellular space|plasma membrane	heparin binding|serine-type endopeptidase activity				0		all_cancers(14;6.2e-52)|all_epithelial(14;1.62e-38)|all_lung(41;1.34e-13)|Lung NSC(41;3.58e-13)|Melanoma(20;1.91e-06)|Hepatocellular(41;0.00886)|Renal(120;0.00988)|Prostate(90;0.00996)|all_hematologic(60;0.014)|Colorectal(36;0.0161)|all_neural(102;0.202)		OV - Ovarian serous cystadenocarcinoma(60;2.13e-11)|BRCA - Breast invasive adenocarcinoma(30;4.59e-06)|GBM - Glioblastoma multiforme(59;0.000149)|STAD - Stomach adenocarcinoma(60;0.000314)|LUSC - Lung squamous cell carcinoma(40;0.00112)|READ - Rectum adenocarcinoma(43;0.176)	Coagulation Factor IX(DB00100)	CATTTTAAATCAATCTGAAAT	0.353													30	48					0	0	0.059317	0	0
DEPDC1B	55789	broad.mit.edu	37	5	59940626	59940626	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr5:59940626G>A	uc003jsh.2	-	5	728	c.655C>T	c.(655-657)CAT>TAT	p.H219Y	DEPDC1B_uc011cqm.1_Missense_Mutation_p.H219Y|DEPDC1B_uc011cqn.1_Missense_Mutation_p.H192Y	NM_018369	NP_060839	Q8WUY9	DEP1B_HUMAN	DEP domain containing 1B isoform 1	219	Rho-GAP.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(1)	1		Lung NSC(810;0.000214)|Prostate(74;0.0147)|Breast(144;0.0991)|Ovarian(174;0.17)				TATACATTATGGATGATGAAC	0.294													14	10					0	0	0.119110	0	0
CKMT2	1160	broad.mit.edu	37	5	80547077	80547077	+	Silent	SNP	G	A	A			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr5:80547077G>A	uc003khc.3	+	3	368	c.126G>A	c.(124-126)CGG>CGA	p.R42R	RNU5E_uc011cto.1_Intron|CKMT2_uc010jaq.2_Silent_p.R42R|CKMT2_uc003khd.3_Silent_p.R42R|uc003khe.1_Intron|uc003khf.1_Intron|uc003khg.1_Intron	NM_001825	NP_001816	P17540	KCRS_HUMAN	sarcomeric mitochondrial creatine kinase	42	Cardiolipin-binding (By similarity).				creatine metabolic process|muscle contraction	mitochondrial inner membrane	ATP binding|creatine kinase activity				0		Lung NSC(167;0.00475)|all_lung(232;0.00502)|Ovarian(174;0.0336)		OV - Ovarian serous cystadenocarcinoma(54;2.29e-44)|Epithelial(54;1.05e-38)|all cancers(79;4.15e-34)	Creatine(DB00148)	CCGAGGTCCGGGAGCAGCCTA	0.428													113	57					0	0	0.139131	0	0
PCDHA3	56145	broad.mit.edu	37	5	140183103	140183103	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr5:140183103C>T	uc003lhf.2	+	1	2321	c.2321C>T	c.(2320-2322)CCT>CTT	p.P774L	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA2_uc011czy.1_Intron|PCDHA3_uc011czz.1_Missense_Mutation_p.P774L	NM_018906	NP_061729	Q9Y5H8	PCDA3_HUMAN	protocadherin alpha 3 isoform 1 precursor	774	Cytoplasmic (Potential).|PXXP 2.|6 X 4 AA repeats of P-X-X-P.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(6)|skin(2)	8			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCTTTTAGCCCTAGCCTTCCT	0.527													56	44					0	0	0.139131	0	0
PCDHB3	56132	broad.mit.edu	37	5	140482253	140482253	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr5:140482253C>T	uc003lio.2	+	1	2020	c.2020C>T	c.(2020-2022)CCG>TCG	p.P674S	uc003lin.2_5'Flank	NM_018937	NP_061760	Q9Y5E6	PCDB3_HUMAN	protocadherin beta 3 precursor	674	Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CCTGCCTCTCCCGGAGGCGGC	0.672													106	47					0	0	0.139131	0	0
SCAND3	114821	broad.mit.edu	37	6	28539833	28539833	+	Missense_Mutation	SNP	T	C	C			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr6:28539833T>C	uc003nlo.2	-	4	4451	c.3833A>G	c.(3832-3834)GAG>GGG	p.E1278G		NM_052923	NP_443155	Q6R2W3	SCND3_HUMAN	SCAN domain containing 3	1278					DNA integration|viral reproduction	nucleus	DNA binding|protein dimerization activity|sequence-specific DNA binding transcription factor activity			ovary(1)	1						gaatccggtctcacagaggta	0													25	41					0	0	0.125774	0	0
TNXB	7148	broad.mit.edu	37	6	32029272	32029272	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr6:32029272G>A	uc003nzl.2	-	21	7596	c.7394C>T	c.(7393-7395)ACC>ATC	p.T2465I		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	2525	Fibronectin type-III 17.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						GCCCCCCACGGTGACCTCGCT	0.697													56	72					0	0	0.139131	0	0
CRISP3	10321	broad.mit.edu	37	6	49696524	49696524	+	Silent	SNP	C	T	T			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr6:49696524C>T	uc003ozs.2	-	8	672	c.657G>A	c.(655-657)TTG>TTA	p.L219L		NM_006061	NP_006052	P54108	CRIS3_HUMAN	cysteine-rich secretory protein 3 precursor	219					innate immune response	proteinaceous extracellular matrix|specific granule				skin(2)	2	Lung NSC(77;0.0161)		KIRC - Kidney renal clear cell carcinoma(2;0.106)|Kidney(12;0.156)			ATGTGAGCTTCAAACTTTTAC	0.363													24	56					0	0	0.091800	0	0
FILIP1	27145	broad.mit.edu	37	6	76023861	76023861	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr6:76023861C>T	uc003pia.2	-	5	2060	c.1687G>A	c.(1687-1689)GAA>AAA	p.E563K	FILIP1_uc003phy.1_Missense_Mutation_p.E563K|FILIP1_uc003phz.2_Missense_Mutation_p.E464K|FILIP1_uc010kbe.2_Missense_Mutation_p.E566K|FILIP1_uc003pib.1_Missense_Mutation_p.E315K	NM_015687	NP_056502	Q7Z7B0	FLIP1_HUMAN	filamin A interacting protein 1	563	Potential.									skin(3)|ovary(1)	4						TATACTTTTTCCTCCATTTCA	0.299													8	8					0	0	0.047766	0	0
MDN1	23195	broad.mit.edu	37	6	90402494	90402494	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr6:90402494G>A	uc003pnn.1	-	63	10371	c.10255C>T	c.(10255-10257)CAC>TAC	p.H3419Y		NM_014611	NP_055426	Q9NU22	MDN1_HUMAN	MDN1, midasin homolog	3419					protein complex assembly|regulation of protein complex assembly	nucleus	ATP binding|ATPase activity|unfolded protein binding			ovary(8)|skin(2)	10		all_cancers(76;1.47e-06)|Acute lymphoblastic leukemia(125;2.23e-10)|Prostate(29;5.55e-10)|all_hematologic(105;2.42e-06)|all_epithelial(107;0.00246)		BRCA - Breast invasive adenocarcinoma(108;0.0193)		AGTGAGGTGTGGAGCTCAGAG	0.587													33	25					0	0	0.059317	0	0
AKD1	221264	broad.mit.edu	37	6	109818714	109818714	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr6:109818714G>A	uc003ptn.2	-	38	5346	c.5269C>T	c.(5269-5271)CGT>TGT	p.R1757C	AKD1_uc011eas.1_Missense_Mutation_p.R142C	NM_001145128	NP_001138600	Q5TCS8	AKD1_HUMAN	adenylate kinase domain containing 1 isoform 1	1757					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		ATP binding|nucleobase, nucleoside, nucleotide kinase activity|nucleoside-triphosphatase activity			ovary(1)	1						ATATATATACGATTATGATAT	0.229													13	12					0	0	0.105934	0	0
IGF2BP3	10643	broad.mit.edu	37	7	23352000	23352000	+	Missense_Mutation	SNP	G	T	T			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr7:23352000G>T	uc003swg.2	-	15	1987	c.1721C>A	c.(1720-1722)CCT>CAT	p.P574H	IGF2BP3_uc003swf.2_Missense_Mutation_p.P193H	NM_006547	NP_006538	O00425	IF2B3_HUMAN	insulin-like growth factor 2 mRNA binding	574					anatomical structure morphogenesis|negative regulation of translation|translation	cytosol|nucleus	mRNA 3'-UTR binding|mRNA 5'-UTR binding|nucleotide binding|protein binding|translation regulator activity			ovary(2)	2						TCTTGACTGAGGTGGTCCACT	0.498													42	86					1.51926e-22	1.5996e-22	0.139131	1	0
TARP	445347	broad.mit.edu	37	7	38301806	38301806	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr7:38301806C>T	uc003tge.1	-	6	1148	c.771G>A	c.(769-771)ATG>ATA	p.M257I	uc003tfx.1_5'Flank|uc003tfz.1_Intron|TARP_uc003tgb.2_Missense_Mutation_p.M53I|TARP_uc003tgc.1_Missense_Mutation_p.M53I|TARP_uc003tgd.1_Missense_Mutation_p.M53I			A2JGV3	A2JGV3_HUMAN	Homo sapiens TCRgamma alternate reading frame protein (TCRg) mRNA, complete cds.	Error:Variant_position_missing_in_A2JGV3_after_alignment											0						CTTTGGGATCCATTGTGATGA	0.358													70	98					0	0	0.139131	0	0
BET1	10282	broad.mit.edu	37	7	93625629	93625629	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr7:93625629G>A	uc003unf.1	-	3	311	c.149C>T	c.(148-150)TCC>TTC	p.S50F	BET1_uc003une.3_RNA	NM_005868	NP_005859	O15155	BET1_HUMAN	blocked early in transport 1	50	Cytoplasmic (Potential).|t-SNARE coiled-coil homology.				ER to Golgi vesicle-mediated transport|protein transport	endoplasmic reticulum membrane|Golgi membrane|integral to membrane	protein binding				0	all_cancers(62;2.22e-10)|all_epithelial(64;1.38e-09)|Lung NSC(181;0.218)	Breast(660;0.000162)|Ovarian(593;0.000626)	STAD - Stomach adenocarcinoma(171;0.000967)			TATTTCAATGGAAAGCTATAA	0.279													28	86					0	0	0.059317	0	0
CASD1	64921	broad.mit.edu	37	7	94184838	94184838	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr7:94184838C>T	uc003uni.3	+	18	2389	c.2162C>T	c.(2161-2163)GCG>GTG	p.A721V	CASD1_uc003unj.3_Missense_Mutation_p.A721V	NM_022900	NP_075051	Q96PB1	CASD1_HUMAN	CAS1 domain containing 1 precursor	721						integral to membrane				ovary(2)	2	all_cancers(62;6.71e-10)|all_epithelial(64;5e-09)|Lung NSC(181;0.188)|all_lung(186;0.215)		STAD - Stomach adenocarcinoma(171;0.0031)			TGGCTGGCAGCGGACACAAGG	0.378													3	44					0	0	0.115264	0	0
FLNC	2318	broad.mit.edu	37	7	128498177	128498177	+	Silent	SNP	C	T	T			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr7:128498177C>T	uc003vnz.3	+	47	8105	c.7896C>T	c.(7894-7896)TCC>TCT	p.S2632S	FLNC_uc003voa.3_Silent_p.S2599S	NM_001458	NP_001449	Q14315	FLNC_HUMAN	gamma filamin isoform a	2632	Interaction with INPPL1.|Filamin 24.|Self-association site, tail (By similarity).				cell junction assembly	cytoskeleton|cytosol|plasma membrane|sarcomere	actin binding			breast(5)|large_intestine(3)|ovary(2)|central_nervous_system(1)|skin(1)	12						CCAAGTTCTCCTCAGATGCCA	0.612													19	26					0	0	0.076483	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr7:140453136A>T	uc003vwc.3	-	15	1860	c.1799T>A	c.(1798-1800)GTG>GAG	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				25	53					0	0	0.144211	0	0
TRYX3	136541	broad.mit.edu	37	7	141955085	141955085	+	Missense_Mutation	SNP	C	T	T	rs147205406		TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr7:141955085C>T	uc003vxb.2	-	3	546	c.226G>A	c.(226-228)GAA>AAA	p.E76K	TRYX3_uc003vxc.3_Missense_Mutation_p.E76K	NM_001001317	NP_001001317	Q8IYP2	PRS58_HUMAN	trypsin X3 precursor	76	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity				0	Melanoma(164;0.0272)					AGATGCTTTTCATTAGAGTCT	0.408													40	54					0	0	0.086207	0	0
INTS9	55756	broad.mit.edu	37	8	28625822	28625822	+	Silent	SNP	A	G	G			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr8:28625822A>G	uc003xha.2	-	17	2117	c.1818T>C	c.(1816-1818)ATT>ATC	p.I606I	INTS9_uc011lav.1_Silent_p.I582I|INTS9_uc011law.1_Silent_p.I585I|INTS9_uc011lax.1_Silent_p.I499I|INTS9_uc010lvc.2_RNA	NM_018250	NP_060720	Q9NV88	INT9_HUMAN	integrator complex subunit 9 isoform 1	606					snRNA processing	integrator complex	protein binding			central_nervous_system(1)|pancreas(1)	2		Ovarian(32;0.0439)		KIRC - Kidney renal clear cell carcinoma(542;0.127)|Kidney(114;0.152)		CCTCCACCTTAATATCACTGA	0.507													98	45					0	0	0.139131	0	0
XKR4	114786	broad.mit.edu	37	8	56436410	56436411	+	Missense_Mutation	DNP	GT	TG	TG			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr8:56436410_56436411GT>TG	uc003xsf.2	+	3	1609_1610	c.1577_1578GT>TG	c.(1576-1578)TGT>TTG	p.C526L		NM_052898	NP_443130	Q5GH76	XKR4_HUMAN	XK, Kell blood group complex subunit-related	526						integral to membrane				pancreas(2)	2			Epithelial(17;0.000117)|all cancers(17;0.000836)			TCACCAAGTTGTGCTTGTGAGG	0.535													34	152					0	0	0.115264	0	0
CHD7	55636	broad.mit.edu	37	8	61707586	61707586	+	Missense_Mutation	SNP	A	G	G			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr8:61707586A>G	uc003xue.2	+	4	2615	c.2138A>G	c.(2137-2139)AAG>AGG	p.K713R		NM_017780	NP_060250	Q9P2D1	CHD7_HUMAN	chromodomain helicase DNA binding protein 7	713	Lys-rich.				central nervous system development|chromatin modification|cognition|cranial nerve development|face development|heart morphogenesis|in utero embryonic development|inner ear morphogenesis|nose development|palate development|regulation of growth hormone secretion|regulation of transcription, DNA-dependent|retina development in camera-type eye|skeletal system development|T cell differentiation|transcription, DNA-dependent	nucleus	ATP binding|chromatin binding|DNA binding|helicase activity	p.556_871dup(1)		ovary(4)|large_intestine(1)|central_nervous_system(1)|lung(1)|breast(1)|pancreas(1)	9		all_cancers(86;0.2)|all_lung(136;0.0402)|Lung NSC(129;0.0459)|all_epithelial(80;0.0477)	BRCA - Breast invasive adenocarcinoma(89;0.143)			TTGAAGAAAAAGGTCAACAAG	0.408													3	111					0	0	0.115264	0	0
KCNB2	9312	broad.mit.edu	37	8	73479985	73479985	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr8:73479985C>T	uc003xzb.2	+	2	604	c.16C>T	c.(16-18)CCC>TCC	p.P6S		NM_004770	NP_004761	Q92953	KCNB2_HUMAN	potassium voltage-gated channel, Shab-related	6	Cytoplasmic (Potential).				regulation of smooth muscle contraction	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|protein binding			skin(3)|large_intestine(1)|pancreas(1)|ovary(1)|central_nervous_system(1)	7	Breast(64;0.137)		Epithelial(68;0.105)			AGAAAAGGCTCCCCCGGGCTT	0.502													138	66					0	0	0.139131	0	0
SLC26A7	115111	broad.mit.edu	37	8	92406163	92406163	+	Splice_Site	SNP	G	C	C			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr8:92406163G>C	uc003yex.2	+	19	2110	c.1832_splice	c.e19-1	p.A611_splice	SLC26A7_uc003yey.2_Splice_Site|SLC26A7_uc003yez.2_Splice_Site_p.A611_splice|SLC26A7_uc003yfa.2_Splice_Site_p.A611_splice	NM_052832	NP_439897	Q8TE54	S26A7_HUMAN	solute carrier family 26, member 7 isoform a							basolateral plasma membrane|integral to membrane|recycling endosome membrane	anion:anion antiporter activity|bicarbonate transmembrane transporter activity|chloride channel activity|oxalate transmembrane transporter activity|sulfate transmembrane transporter activity			ovary(2)	2			BRCA - Breast invasive adenocarcinoma(11;0.00802)			CTTTCTTGAAGCTTCCTTGAT	0.363													67	39					0	0	0.139131	0	0
ZFPM2	23414	broad.mit.edu	37	8	106814320	106814320	+	Silent	SNP	G	A	A			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr8:106814320G>A	uc003ymd.2	+	8	2033	c.2010G>A	c.(2008-2010)GTG>GTA	p.V670V	ZFPM2_uc011lhs.1_Silent_p.V401V	NM_012082	NP_036214	Q8WW38	FOG2_HUMAN	zinc finger protein, multitype 2	670					blood coagulation|negative regulation of fat cell differentiation|outflow tract septum morphogenesis|right ventricular cardiac muscle tissue morphogenesis|ventricular septum morphogenesis	nucleoplasm	DNA binding|RNA polymerase II transcription coactivator activity|transcription corepressor activity|transcription factor binding|zinc ion binding			ovary(4)|large_intestine(1)	5			OV - Ovarian serous cystadenocarcinoma(57;8.28e-08)			CTGTTGATGTGAAAAATCCCA	0.443													40	21					0	0	0.092188	0	0
FAM135B	51059	broad.mit.edu	37	8	139145027	139145027	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr8:139145027C>T	uc003yuy.2	-	20	4201	c.4030G>A	c.(4030-4032)GAA>AAA	p.E1344K	FAM135B_uc003yux.2_Missense_Mutation_p.E1245K|FAM135B_uc003yuz.2_RNA	NM_015912	NP_056996	Q49AJ0	F135B_HUMAN	hypothetical protein LOC51059	1344										ovary(7)|skin(2)	9	all_epithelial(106;8.29e-14)|Lung NSC(106;6.88e-06)|all_lung(105;1.44e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0805)			TTGATCATTTCTGCATAAACT	0.493										HNSCC(54;0.14)			332	147					0	0	0.139131	0	0
SCRIB	23513	broad.mit.edu	37	8	144887330	144887330	+	Missense_Mutation	SNP	G	T	T			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr8:144887330G>T	uc003yzp.1	-	19	2629	c.2622C>A	c.(2620-2622)TTC>TTA	p.F874L	SCRIB_uc003yzn.1_5'Flank|SCRIB_uc003yzo.1_Missense_Mutation_p.F874L	NM_015356	NP_056171	Q14160	SCRIB_HUMAN	scribble isoform b	874	PDZ 2.|Interaction with ARHGEF7.				activation of Rac GTPase activity|apoptosis involved in morphogenesis|cell migration|cell proliferation|cell-cell adhesion|establishment of apical/basal cell polarity|interspecies interaction between organisms|mammary gland duct morphogenesis|negative regulation of mitotic cell cycle|positive chemotaxis|positive regulation of apoptosis|positive regulation of receptor recycling|protein localization to adherens junction	cell-cell adherens junction|Scrib-APC-beta-catenin complex	protein binding			urinary_tract(1)|ovary(1)|kidney(1)|central_nervous_system(1)|pancreas(1)	5	all_cancers(97;2.31e-11)|all_epithelial(106;1.58e-09)|Lung NSC(106;0.00013)|all_lung(105;0.000374)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;1.23e-39)|all cancers(56;1.12e-34)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.18)			CAGCAATGCTGAAGCCCAGCC	0.726													13	53					4.14922e-12	4.32704e-12	0.146539	1	0
SLC24A2	25769	broad.mit.edu	37	9	19786271	19786271	+	Silent	SNP	G	A	A			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr9:19786271G>A	uc003zoa.1	-	1	656	c.594C>T	c.(592-594)ATC>ATT	p.I198I	SLC24A2_uc003zob.1_Silent_p.I198I	NM_020344	NP_065077	Q9UI40	NCKX2_HUMAN	solute carrier family 24	198	Alpha-1.|Helical; (Potential).				visual perception	integral to membrane|plasma membrane	calcium, potassium:sodium antiporter activity|symporter activity			ovary(3)	3				GBM - Glioblastoma multiforme(1;1.67e-55)|Lung(42;0.0443)		TGCTGTGAGCGATAAATACCC	0.458													26	15					0	0	0.125774	0	0
DAPK1	1612	broad.mit.edu	37	9	90313685	90313685	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr9:90313685C>T	uc004apc.2	+	23	2864	c.2726C>T	c.(2725-2727)TCG>TTG	p.S909L	DAPK1_uc004apd.2_Missense_Mutation_p.S909L|DAPK1_uc011ltg.1_Missense_Mutation_p.S843L|DAPK1_uc011lth.1_Missense_Mutation_p.S646L	NM_004938	NP_004929	P53355	DAPK1_HUMAN	death-associated protein kinase 1	909					apoptosis|induction of apoptosis by extracellular signals|intracellular protein kinase cascade	actin cytoskeleton|cytoplasm	ATP binding|calmodulin binding|protein serine/threonine kinase activity			ovary(1)|breast(1)	2						AAAGACACATCGTTGCTGAAA	0.532									Chronic_Lymphocytic_Leukemia_Familial_Clustering_of				20	12					0	0	0.043863	0	0
SVEP1	79987	broad.mit.edu	37	9	113168926	113168926	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr9:113168926G>A	uc010mtz.2	-	38	9291	c.8954C>T	c.(8953-8955)TCA>TTA	p.S2985L	SVEP1_uc010mty.2_Missense_Mutation_p.S911L	NM_153366	NP_699197	Q4LDE5	SVEP1_HUMAN	polydom	2985	Sushi 26.				cell adhesion	cytoplasm|extracellular region|membrane	calcium ion binding			ovary(7)	7						CCTTCTTGATGAATTTCCATG	0.463													23	8					0	0	0.062417	0	0
C9orf96	169436	broad.mit.edu	37	9	136259526	136259526	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr9:136259526C>T	uc004cdk.2	+	8	753	c.692C>T	c.(691-693)TCC>TTC	p.S231F	C9orf96_uc004cdl.2_RNA	NM_153710	NP_714921	Q8NE28	SGK71_HUMAN	hypothetical protein LOC169436	231	Protein kinase.						ATP binding|protein kinase activity			stomach(2)|central_nervous_system(2)	4				OV - Ovarian serous cystadenocarcinoma(145;1.06e-07)|Epithelial(140;1.28e-06)|all cancers(34;1.46e-05)		ACCAGCTGCTCCTTCATGGAT	0.617													38	35					0	0	0.098360	0	0
FAM47A	158724	broad.mit.edu	37	X	34149758	34149758	+	Missense_Mutation	SNP	G	T	T			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chrX:34149758G>T	uc004ddg.2	-	1	671	c.638C>A	c.(637-639)CCG>CAG	p.P213Q		NM_203408	NP_981953	Q5JRC9	FA47A_HUMAN	hypothetical protein LOC158724	213	Pro-rich.									ovary(4)|central_nervous_system(1)	5						GGGAGGCTCCGGGCTTAGATG	0.632													34	76					8.16277e-20	8.55334e-20	0.092188	1	0
MAGEB16	139604	broad.mit.edu	37	X	35820703	35820703	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chrX:35820703G>A	uc010ngt.1	+	2	669	c.390G>A	c.(388-390)ATG>ATA	p.M130I		NM_001099921	NP_001093391	A2A368	MAGBG_HUMAN	melanoma antigen family B, 16	130	MAGE.									lung(3)|ovary(2)|breast(1)|skin(1)	7						AGTGTCAGATGAAAAAGCCAA	0.458													24	36					0	0	0.083992	0	0
TRO	7216	broad.mit.edu	37	X	54956439	54956439	+	Silent	SNP	C	T	T			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chrX:54956439C>T	uc004dtq.2	+	12	3389	c.3282C>T	c.(3280-3282)ATC>ATT	p.I1094I	TRO_uc004dts.2_Intron|TRO_uc004dtr.2_Intron|TRO_uc004dtt.2_Intron|TRO_uc004dtu.2_Intron|TRO_uc004dtv.2_Intron|TRO_uc011mok.1_Silent_p.I625I|TRO_uc004dtw.2_Silent_p.I697I|TRO_uc004dtx.2_Silent_p.I477I	NM_001039705	NP_001034794	Q12816	TROP_HUMAN	trophinin isoform 5	1094	29.|62 X 10 AA approximate tandem repeats.				embryo implantation|homophilic cell adhesion	integral to plasma membrane				ovary(1)	1						GTGCACCAATCACCAACCCTG	0.577													30	52					0	0	0.059317	0	0
XIST	7503	broad.mit.edu	37	X	73063804	73063804	+	RNA	SNP	G	A	A			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chrX:73063804G>A	uc004ebm.1	-	1		c.8785C>T				NR_001564				Homo sapiens cDNA: FLJ21545 fis, clone COL06195.												0						GCCTTGGAGGGAAACAGTATA	0.383													11	16					0	0	0.093190	0	0
ESX1	80712	broad.mit.edu	37	X	103495543	103495543	+	Missense_Mutation	SNP	C	T	T	rs144948361		TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chrX:103495543C>T	uc004ely.2	-	4	645	c.587G>A	c.(586-588)CGA>CAA	p.R196Q		NM_153448	NP_703149	Q8N693	ESX1_HUMAN	extraembryonic, spermatogenesis, homeobox	196	Homeobox.				negative regulation of transcription, DNA-dependent|regulation of cell cycle	cytoplasm|nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						CCTCTGATTTCGTTTCCACTT	0.433													97	149					0	0	0.139131	0	0
SLC6A14	11254	broad.mit.edu	37	X	115585523	115585523	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chrX:115585523C>T	uc004eqi.2	+	10	1423	c.1319C>T	c.(1318-1320)CCC>CTC	p.P440L		NM_007231	NP_009162	Q9UN76	S6A14_HUMAN	solute carrier family 6 (amino acid	440					cellular amino acid metabolic process|response to toxin	integral to membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity			ovary(2)|pancreas(1)	3					L-Proline(DB00172)	GATTTATTTCCCAAAGTGATG	0.388													22	28					0	0	0.076483	0	0
WDR44	54521	broad.mit.edu	37	X	117527200	117527200	+	Silent	SNP	G	A	A			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chrX:117527200G>A	uc004eqn.2	+	4	1217	c.792G>A	c.(790-792)TTG>TTA	p.L264L	WDR44_uc004eqo.2_Silent_p.L264L|WDR44_uc011mtr.1_Silent_p.L239L|WDR44_uc010nqi.2_5'UTR	NM_019045	NP_061918	Q5JSH3	WDR44_HUMAN	WD repeat domain 44 protein	264						cytosol|endosome membrane|Golgi apparatus|perinuclear region of cytoplasm				lung(2)|upper_aerodigestive_tract(1)|ovary(1)|pancreas(1)	5						AAAGCGAATTGGAATTTGAGA	0.378													75	142					0	0	0.139131	0	0
ODZ1	10178	broad.mit.edu	37	X	123554186	123554186	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chrX:123554186C>T	uc004euj.2	-	24	5000	c.4936G>A	c.(4936-4938)GAA>AAA	p.E1646K	ODZ1_uc011muj.1_Missense_Mutation_p.E1652K|ODZ1_uc010nqy.2_Missense_Mutation_p.E1653K	NM_014253	NP_055068	Q9UKZ4	TEN1_HUMAN	odz, odd Oz/ten-m homolog 1 isoform 3	1646	Extracellular (Potential).|YD 4.				immune response|negative regulation of cell proliferation|nervous system development|signal transduction	extracellular region	heparin binding			ovary(11)|breast(4)|large_intestine(2)|skin(2)|pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	23						CATCCATTTTCGTTACTTTTG	0.398													49	91					0	0	0.139131	0	0
BCORL1	63035	broad.mit.edu	37	X	129147333	129147333	+	Missense_Mutation	SNP	C	G	G			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chrX:129147333C>G	uc004evb.1	+	4	699	c.585C>G	c.(583-585)AAC>AAG	p.N195K	BCORL1_uc010nrd.1_Missense_Mutation_p.N97K	NM_021946	NP_068765	Q5H9F3	BCORL_HUMAN	BCL6 co-repressor-like 1	195					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus				ovary(4)|breast(2)|lung(1)	7						TTACCACTAACTTCAGTCCTC	0.582													98	160					0	0	0.139131	0	0
CDR1	1038	broad.mit.edu	37	X	139866437	139866437	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chrX:139866437G>A	uc004fbg.1	-	1	287	c.95C>T	c.(94-96)CCT>CTT	p.P32L	uc004fbf.1_RNA	NM_004065	NP_004056	P51861	CDR1_HUMAN	cerebellar degeneration-related protein 1,	32	5.|23 X 6 AA approximate repeats.										0	Acute lymphoblastic leukemia(192;7.65e-05)	Lung SC(4;0.051)				TTCCAACAAAGGTACGTCTTC	0.443													76	106					0	0	0.139131	0	0
GABRE	2564	broad.mit.edu	37	X	151128345	151128345	+	Silent	SNP	C	T	T			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chrX:151128345C>T	uc004ffi.2	-	6	804	c.750G>A	c.(748-750)GTG>GTA	p.V250V	GABRE_uc011myd.1_RNA|GABRE_uc011mye.1_RNA|MIR224_hsa-mir-224|MI0000301_5'Flank|MIR452_hsa-mir-452|MI0001733_5'Flank	NM_004961	NP_004952	P78334	GBRE_HUMAN	gamma-aminobutyric acid (GABA) A receptor,	250	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)	2	Acute lymphoblastic leukemia(192;6.56e-05)					TTTTGTTGCTCACTCCTGTAA	0.453													27	57					0	0	0.116897	0	0
L1CAM	3897	broad.mit.edu	37	X	153132318	153132318	+	Silent	SNP	C	T	T			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chrX:153132318C>T	uc004fjb.2	-	18	2325	c.2217G>A	c.(2215-2217)CGG>CGA	p.R739R	L1CAM_uc004fjc.2_Silent_p.R739R|L1CAM_uc010nuo.2_Silent_p.R734R	NM_000425	NP_000416	P32004	L1CAM_HUMAN	L1 cell adhesion molecule isoform 1 precursor	739	Extracellular (Potential).|Fibronectin type-III 2.		R -> W.		axon guidance|blood coagulation|cell death|leukocyte migration	integral to membrane				ovary(8)|central_nervous_system(1)	9	all_cancers(53;6.72e-15)|all_epithelial(53;3.19e-09)|all_lung(58;3.39e-06)|all_hematologic(71;4.25e-06)|Lung NSC(58;4.7e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					AGTCCATCCACCGGAGCGGCT	0.647													19	22					0	0	0.049695	0	0
L1CAM	3897	broad.mit.edu	37	X	153137720	153137720	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chrX:153137720G>A	uc004fjb.2	-	4	395	c.287C>T	c.(286-288)ACC>ATC	p.T96I	L1CAM_uc004fjc.2_Missense_Mutation_p.T96I|L1CAM_uc010nuo.2_Missense_Mutation_p.T91I|L1CAM_uc004fjd.1_5'Flank|L1CAM_uc004fje.1_Missense_Mutation_p.T91I	NM_000425	NP_000416	P32004	L1CAM_HUMAN	L1 cell adhesion molecule isoform 1 precursor	96	Extracellular (Potential).|Ig-like C2-type 1.				axon guidance|blood coagulation|cell death|leukocyte migration	integral to membrane				ovary(8)|central_nervous_system(1)	9	all_cancers(53;6.72e-15)|all_epithelial(53;3.19e-09)|all_lung(58;3.39e-06)|all_hematologic(71;4.25e-06)|Lung NSC(58;4.7e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					GCCCGTGATGGTGAAGGAGCC	0.592													52	86					0	0	0.139131	0	0
FMN2	56776	broad.mit.edu	37	1	240255569	240255571	+	In_Frame_Del	DEL	GGC	-	-	rs35817759		TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr1:240255569_240255571delGGC	uc010pyd.1	+	1	385_387	c.160_162delGGC	c.(160-162)GGCdel	p.G59del	FMN2_uc010pye.1_In_Frame_Del_p.G59del	NM_020066	NP_064450	Q9NZ56	FMN2_HUMAN	formin 2	59					actin cytoskeleton organization|establishment of meiotic spindle localization|intracellular signal transduction|meiotic chromosome movement towards spindle pole|meiotic metaphase I|multicellular organismal development|oogenesis|polar body extrusion after meiotic divisions		actin binding			ovary(4)|pancreas(3)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Ovarian(103;0.127)	all_cancers(173;0.013)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)			GGGGGGAgggggcggcggcggcg	0.557													11	19	---	---	---	---					
KIAA0182	23199	broad.mit.edu	37	16	85682290	85682290	+	Frame_Shift_Del	DEL	C	-	-			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr16:85682290delC	uc002fix.2	+	3	433	c.359delC	c.(358-360)ACCfs	p.T120fs	KIAA0182_uc002fiw.2_Frame_Shift_Del_p.T16fs|KIAA0182_uc002fiy.2_Frame_Shift_Del_p.T47fs	NM_014615	NP_055430	Q14687	GSE1_HUMAN	genetic suppressor element 1 isoform 1	120							protein binding			large_intestine(3)|ovary(1)|skin(1)	5						GTGCCCAGCACCCCCCCCGTG	0.687													8	204	---	---	---	---					
PCDH10	57575	broad.mit.edu	37	4	134073569	134073571	+	In_Frame_Del	DEL	CTG	-	-			TCGA-BF-A3DJ-01A-11D-A20D-08	TCGA-BF-A3DJ-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	c4e207fb-76b8-4330-baa4-7658431d42dd	517609a6-e93b-45ef-95c4-b8684db50350	g.chr4:134073569_134073571delCTG	uc003iha.2	+	1	3100_3102	c.2274_2276delCTG	c.(2272-2277)CTCTGC>CTC	p.C763del	PCDH10_uc003igz.2_In_Frame_Del_p.C763del	NM_032961	NP_116586	Q9P2E7	PCD10_HUMAN	protocadherin 10 isoform 1 precursor	763	Cys-rich.|Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)	2				LUSC - Lung squamous cell carcinoma(193;0.227)		ATTGCTGCCTCTGCTGCTGCTGC	0.581													11	90	---	---	---	---					
