Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
NOC2L	26155	broad.mit.edu	37	1	888572	888572	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr1:888572G>A	uc001abz.3	-	9	1044	c.985C>T	c.(985-987)CTT>TTT	p.L329F	NOC2L_uc001aby.3_Missense_Mutation_p.L126F|NOC2L_uc009vjq.2_Missense_Mutation_p.L329F	NM_015658	NP_056473	Q9Y3T9	NOC2L_HUMAN	nucleolar complex associated 2 homolog	329						nucleolus	protein binding			ovary(1)|skin(1)	2	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		UCEC - Uterine corpus endometrioid carcinoma (11;0.00459)|Epithelial(90;1.86e-38)|OV - Ovarian serous cystadenocarcinoma(86;6.08e-23)|Colorectal(212;0.000161)|COAD - Colon adenocarcinoma(227;0.000194)|BRCA - Breast invasive adenocarcinoma(365;0.000475)|Kidney(185;0.00231)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0344)|Lung(427;0.2)		ACGGGGCCAAGGAAAGTGTCC	0.597													14	14					0	0	1	0	0
TTLL10	254173	broad.mit.edu	37	1	1115645	1115645	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr1:1115645G>A	uc001acy.2	+	6	582	c.431G>A	c.(430-432)GGG>GAG	p.G144E	uc001acx.1_5'Flank|TTLL10_uc010nyg.1_Missense_Mutation_p.G144E|TTLL10_uc001acz.1_Missense_Mutation_p.G71E	NM_001130045	NP_001123517	Q6ZVT0	TTL10_HUMAN	tubulin tyrosine ligase-like family, member 10	144					protein modification process		ATP binding|tubulin-tyrosine ligase activity			large_intestine(1)	1	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;9.48e-15)|all_lung(118;9.67e-07)|Lung NSC(185;5.59e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Lung SC(97;0.217)		Epithelial(90;4.75e-36)|OV - Ovarian serous cystadenocarcinoma(86;5.82e-22)|Colorectal(212;3.94e-05)|COAD - Colon adenocarcinoma(227;4.22e-05)|Kidney(185;0.00227)|BRCA - Breast invasive adenocarcinoma(365;0.00461)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0339)|Lung(427;0.199)		CTCCTGCTGGGGGGTGGGAAG	0.706													4	3					0	0	1	0	0
TTLL10	254173	broad.mit.edu	37	1	1119445	1119445	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr1:1119445G>A	uc001acy.2	+	12	1385	c.1234G>A	c.(1234-1236)GAC>AAC	p.D412N	TTLL10_uc010nyg.1_Missense_Mutation_p.D412N|TTLL10_uc001acz.1_Missense_Mutation_p.D339N	NM_001130045	NP_001123517	Q6ZVT0	TTL10_HUMAN	tubulin tyrosine ligase-like family, member 10	412	TTL.				protein modification process		ATP binding|tubulin-tyrosine ligase activity			large_intestine(1)	1	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;9.48e-15)|all_lung(118;9.67e-07)|Lung NSC(185;5.59e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Lung SC(97;0.217)		Epithelial(90;4.75e-36)|OV - Ovarian serous cystadenocarcinoma(86;5.82e-22)|Colorectal(212;3.94e-05)|COAD - Colon adenocarcinoma(227;4.22e-05)|Kidney(185;0.00227)|BRCA - Breast invasive adenocarcinoma(365;0.00461)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0339)|Lung(427;0.199)		CCATTCCAGCGACCTCGGCGG	0.597													111	136					0	0	1	0	0
KLHL21	9903	broad.mit.edu	37	1	6653669	6653669	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr1:6653669G>A	uc001aoa.2	-	4	1602	c.1550C>T	c.(1549-1551)TCT>TTT	p.S517F	KLHL21_uc001anz.1_3'UTR|KLHL21_uc009vme.2_Missense_Mutation_p.S150F	NM_014851	NP_055666	Q9UJP4	KLH21_HUMAN	kelch-like 21	517	Kelch 6.				anaphase|cytokinesis|mitosis|protein ubiquitination	Cul3-RING ubiquitin ligase complex|cytoplasm|polar microtubule				central_nervous_system(1)	1	Ovarian(185;0.0212)|all_lung(157;0.154)	all_cancers(23;7.39e-28)|all_epithelial(116;1.76e-17)|all_lung(118;2.27e-05)|Lung NSC(185;9.97e-05)|Renal(390;0.00188)|Breast(487;0.00289)|Colorectal(325;0.00342)|Hepatocellular(190;0.0218)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.156)		Colorectal(212;1.36e-07)|COAD - Colon adenocarcinoma(227;1.4e-05)|Kidney(185;4.95e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000528)|KIRC - Kidney renal clear cell carcinoma(229;0.000927)|STAD - Stomach adenocarcinoma(132;0.0172)|READ - Rectum adenocarcinoma(331;0.0644)		GTATCCCCCAGAGACGTACAG	0.622													22	27					0	0	1	0	0
CAMTA1	23261	broad.mit.edu	37	1	7798376	7798376	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr1:7798376C>T	uc001aoi.2	+	16	4223	c.4016C>T	c.(4015-4017)CCG>CTG	p.P1339L	CAMTA1_uc010nzv.1_Missense_Mutation_p.P426L|CAMTA1_uc001aok.3_Missense_Mutation_p.P382L|CAMTA1_uc001aoj.2_Missense_Mutation_p.P295L	NM_015215	NP_056030	Q9Y6Y1	CMTA1_HUMAN	calmodulin-binding transcription activator 1	1339					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	calmodulin binding			ovary(5)|central_nervous_system(2)|breast(1)|pancreas(1)	9	Ovarian(185;0.0634)	all_epithelial(116;8.38e-23)|all_lung(118;5.87e-07)|Lung NSC(185;3.43e-06)|Renal(390;0.000219)|Breast(487;0.000307)|Colorectal(325;0.000615)|Hepatocellular(190;0.0088)|Myeloproliferative disorder(586;0.0303)|Ovarian(437;0.0388)		UCEC - Uterine corpus endometrioid carcinoma (279;0.101)|Colorectal(212;1.33e-05)|COAD - Colon adenocarcinoma(227;0.000235)|BRCA - Breast invasive adenocarcinoma(304;0.000864)|Kidney(185;0.00244)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0179)|READ - Rectum adenocarcinoma(331;0.133)		ACTGGAAATCCGAAGGGGACC	0.498													26	49					0	0	1	0	0
SPSB1	80176	broad.mit.edu	37	1	9416185	9416185	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr1:9416185C>T	uc010oae.1	+	2	574	c.235C>T	c.(235-237)CCG>TCG	p.P79S	SPSB1_uc001apv.2_Missense_Mutation_p.P79S	NM_025106	NP_079382	Q96BD6	SPSB1_HUMAN	splA/ryanodine receptor domain and SOCS box	79	B30.2/SPRY.				intracellular signal transduction	cytoplasm					0	all_lung(157;0.194)	all_epithelial(116;4.38e-15)|all_lung(118;0.000156)|Lung NSC(185;0.000446)|Renal(390;0.000469)|Colorectal(325;0.0062)|Breast(348;0.0139)|Hepatocellular(190;0.0228)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.104)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;2.72e-07)|COAD - Colon adenocarcinoma(227;9.12e-05)|Kidney(185;0.000296)|KIRC - Kidney renal clear cell carcinoma(229;0.00106)|STAD - Stomach adenocarcinoma(132;0.00193)|BRCA - Breast invasive adenocarcinoma(304;0.00202)|READ - Rectum adenocarcinoma(331;0.0419)		TCACCGGCATCCGGTGGCCCA	0.572													133	141					0	0	1	0	0
TNFRSF8	943	broad.mit.edu	37	1	12164572	12164572	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr1:12164572G>A	uc001atq.2	+	4	627	c.405G>A	c.(403-405)ATG>ATA	p.M135I	TNFRSF8_uc010obc.1_Missense_Mutation_p.M24I	NM_001243	NP_001234	P28908	TNR8_HUMAN	tumor necrosis factor receptor superfamily,	135	TNFR-Cys 3.|Extracellular (Potential).				cellular response to mechanical stimulus|negative regulation of cell proliferation|positive regulation of apoptosis|positive regulation of TRAIL biosynthetic process|positive regulation of tumor necrosis factor biosynthetic process	cytoplasm|integral to membrane|plasma membrane				skin(2)|ovary(1)|pancreas(1)|central_nervous_system(1)	5	Ovarian(185;0.249)	Lung NSC(185;8.71e-05)|all_lung(284;9.89e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;5.66e-06)|COAD - Colon adenocarcinoma(227;0.000261)|BRCA - Breast invasive adenocarcinoma(304;0.000304)|Kidney(185;0.000777)|KIRC - Kidney renal clear cell carcinoma(229;0.00261)|STAD - Stomach adenocarcinoma(313;0.0073)|READ - Rectum adenocarcinoma(331;0.0649)		CGGCAGGGATGATTGTCAAGT	0.572													36	21					0	0	1	0	0
PRAMEF11	440560	broad.mit.edu	37	1	12887493	12887493	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr1:12887493C>T	uc001auk.2	-	3	560	c.364G>A	c.(364-366)GAA>AAA	p.E122K		NM_001146344	NP_001139816	O60813	PRA11_HUMAN	PRAME family member 11	122											0						GTGAGGTATTCATCCAGAGTC	0.473													169	222					0	0	1	0	0
LOC649330	649330	broad.mit.edu	37	1	12907852	12907852	+	Silent	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr1:12907852C>T	uc009vno.2	-	1	386	c.291G>A	c.(289-291)GTG>GTA	p.V97V	HNRNPCL1_uc010obf.1_Silent_p.V97V	NM_001146181	NP_001139653	B7ZW38	B7ZW38_HUMAN	heterogeneous nuclear ribonucleoprotein C-like	97							nucleic acid binding|nucleotide binding				0						CTGATCGTTTCACACCTGCGT	0.493													15	126					0	0	1	0	0
PRAMEF4	400735	broad.mit.edu	37	1	12943102	12943102	+	Silent	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr1:12943102G>A	uc001aun.2	-	2	185	c.114C>T	c.(112-114)TTC>TTT	p.F38F		NM_001009611	NP_001009611	O60810	PRAM4_HUMAN	PRAME family member 4	38										ovary(1)	1	Ovarian(185;0.249)	Lung NSC(185;3.67e-05)|all_lung(284;4.03e-05)|Renal(390;0.000147)|Breast(348;0.000278)|Colorectal(325;0.00058)|Ovarian(437;0.00965)|Hepatocellular(190;0.0245)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		ACAGTGGGGGGAAAAGTTCTG	0.627													50	71					0	0	1	0	0
TAS1R2	80834	broad.mit.edu	37	1	19181164	19181164	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr1:19181164C>T	uc001bba.1	-	3	801	c.800G>A	c.(799-801)AGC>AAC	p.S267N		NM_152232	NP_689418	Q8TE23	TS1R2_HUMAN	taste receptor, type 1, member 2 precursor	267	Extracellular (Potential).				detection of chemical stimulus involved in sensory perception of sweet taste	plasma membrane	protein heterodimerization activity|taste receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4		Colorectal(325;3.46e-05)|all_lung(284;0.000321)|Lung NSC(340;0.000398)|Renal(390;0.000518)|Breast(348;0.000812)|Ovarian(437;0.00764)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00466)|BRCA - Breast invasive adenocarcinoma(304;3.56e-05)|Kidney(64;0.000177)|KIRC - Kidney renal clear cell carcinoma(64;0.00262)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)	Aspartame(DB00168)	GCGCGCTGTGCTCTGCTGCAG	0.622													8	14					0	0	1	0	0
DHDDS	79947	broad.mit.edu	37	1	26772844	26772844	+	Silent	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr1:26772844C>T	uc001bml.2	+	5	482	c.361C>T	c.(361-363)CTG>TTG	p.L121L	DHDDS_uc001bmk.2_Silent_p.L121L|DHDDS_uc001bmm.2_Silent_p.L28L|DHDDS_uc001bmn.2_Intron|DHDDS_uc010ofd.1_Silent_p.L121L	NM_205861	NP_995583	Q86SQ9	DHDDS_HUMAN	dehydrodolichyl diphosphate synthase isoform b	121							protein binding|transferase activity, transferring alkyl or aryl (other than methyl) groups			breast(3)	3		all_cancers(24;2.04e-25)|Colorectal(325;3.46e-05)|all_lung(284;5.94e-05)|Lung NSC(340;7.26e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.00637)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;1.11e-27)|Colorectal(126;1.61e-08)|COAD - Colon adenocarcinoma(152;9.32e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.000794)|BRCA - Breast invasive adenocarcinoma(304;0.00104)|STAD - Stomach adenocarcinoma(196;0.00154)|GBM - Glioblastoma multiforme(114;0.0161)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.166)|LUSC - Lung squamous cell carcinoma(448;0.239)		TATCCGGGTCCTGGGCGATCT	0.537													43	53					0	0	1	0	0
NR0B2	8431	broad.mit.edu	37	1	27238471	27238471	+	Silent	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr1:27238471G>A	uc001bnf.2	-	2	775	c.639C>T	c.(637-639)CGC>CGT	p.R213R		NM_021969	NP_068804	Q15466	NR0B2_HUMAN	short heterodimer partner	213	Ligand-binding (By similarity).		R -> C (in early-onset obesity; Japanese population; loss of repressor activity).		cholesterol metabolic process|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	cytoplasm|nucleoplasm	DNA binding|protein domain specific binding|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|transcription corepressor activity				0		all_cancers(24;1.23e-26)|all_epithelial(13;1.19e-23)|Colorectal(325;3.46e-05)|all_lung(284;5.94e-05)|Lung NSC(340;7.26e-05)|Breast(348;0.00017)|Renal(390;0.0007)|Ovarian(437;0.00764)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Epithelial(14;1.01e-51)|OV - Ovarian serous cystadenocarcinoma(117;8.22e-30)|Colorectal(126;5.31e-09)|COAD - Colon adenocarcinoma(152;9.31e-07)|BRCA - Breast invasive adenocarcinoma(304;0.000272)|STAD - Stomach adenocarcinoma(196;0.000588)|KIRC - Kidney renal clear cell carcinoma(1967;0.000716)|READ - Rectum adenocarcinoma(331;0.0419)		CACGGGTCAGGCGGCCTTGGG	0.627													28	61					0	0	1	0	0
C1orf38	9473	broad.mit.edu	37	1	28206306	28206306	+	Silent	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr1:28206306C>T	uc001bpc.3	+	3	415	c.387C>T	c.(385-387)CTC>CTT	p.L129L	C1orf38_uc001boz.2_Silent_p.L129L|C1orf38_uc001bpa.2_Intron|C1orf38_uc010ofn.1_Silent_p.L129L|C1orf38_uc010ofo.1_Silent_p.L129L	NM_001105556	NP_001099026	Q5TEJ8	THMS2_HUMAN	basement membrane-induced gene isoform 3	129	CABIT 1.				cell adhesion|inflammatory response					ovary(1)	1		Colorectal(325;3.46e-05)|all_lung(284;0.000129)|Lung NSC(340;0.000259)|Renal(390;0.00121)|Breast(348;0.00345)|Ovarian(437;0.00503)|all_neural(195;0.0208)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0416)|OV - Ovarian serous cystadenocarcinoma(117;2.52e-24)|Colorectal(126;2.96e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00244)|KIRC - Kidney renal clear cell carcinoma(1967;0.0027)|STAD - Stomach adenocarcinoma(196;0.00303)|READ - Rectum adenocarcinoma(331;0.0649)		AGGACCAGCTCCTCATGCTTG	0.612													45	34					0	0	1	0	0
TRIM62	55223	broad.mit.edu	37	1	33625512	33625512	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr1:33625512C>T	uc001bxb.2	-	3	1176	c.538G>A	c.(538-540)GAG>AAG	p.E180K		NM_018207	NP_060677	Q9BVG3	TRI62_HUMAN	tripartite motif-containing 62	180	Potential.					intracellular	zinc ion binding				0		Myeloproliferative disorder(586;0.0393)				TCGAAGGCCTCGCCGATAGTG	0.652													12	23					0	0	1	0	0
CSMD2	114784	broad.mit.edu	37	1	34285366	34285366	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr1:34285366C>T	uc001bxn.1	-	9	1181	c.1152G>A	c.(1150-1152)ATG>ATA	p.M384I	CSMD2_uc001bxm.1_Missense_Mutation_p.M424I	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	384	Extracellular (Potential).|Sushi 2.					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				CGCTCACTTTCATACAGGTGA	0.602													12	14					0	0	1	0	0
GJB5	2709	broad.mit.edu	37	1	35223414	35223414	+	Silent	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr1:35223414G>A	uc001bxu.2	+	2	583	c.483G>A	c.(481-483)GTG>GTA	p.V161V	GJB4_uc001bxv.1_5'Flank	NM_005268	NP_005259	O95377	CXB5_HUMAN	gap junction protein, beta 5, 31.1kDa	161	Extracellular (Potential).				cell communication|epidermis development	connexon complex|integral to membrane				ovary(1)	1		Myeloproliferative disorder(586;0.0393)				TCCCTCCTGTGGTCAAGTGCC	0.507													24	20					0	0	1	0	0
DNALI1	7802	broad.mit.edu	37	1	38025047	38025047	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr1:38025047G>A	uc001cbj.2	+	3	423	c.413G>A	c.(412-414)AGG>AAG	p.R138K	DNALI1_uc010oie.1_Intron	NM_003462	NP_003453	O14645	IDLC_HUMAN	dynein, axonemal, light intermediate chain 1	116					cellular component movement|single fertilization	axonemal dynein complex	microtubule motor activity			large_intestine(1)|ovary(1)	2		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)				CGGCAGGCCAGGGAAACAGGC	0.592													13	23					0	0	1	0	0
EPHA10	284656	broad.mit.edu	37	1	38227753	38227753	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr1:38227753C>T	uc009vvi.2	-	3	260	c.174G>A	c.(172-174)TGG>TGA	p.W58*	EPHA10_uc001cbw.3_Nonsense_Mutation_p.W58*	NM_001099439	NP_001092909	Q5JZY3	EPHAA_HUMAN	EPH receptor A10 isofom 3	58	Extracellular (Potential).					extracellular region|integral to membrane|integral to plasma membrane	ATP binding|ephrin receptor activity|protein binding|transmembrane-ephrin receptor activity			breast(4)|stomach(3)|lung(1)	8	Acute lymphoblastic leukemia(166;0.074)|all_hematologic(146;0.197)	Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)				TGATCTCCTCCCACTGGGGAC	0.592													24	28					0	0	1	0	0
MYCL1	4610	broad.mit.edu	37	1	40366904	40366904	+	Missense_Mutation	SNP	C	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr1:40366904C>A	uc001cer.1	-	2	420	c.203G>T	c.(202-204)TGC>TTC	p.C68F	MYCL1_uc001ces.1_Missense_Mutation_p.C68F|MYCL1_uc001cet.1_Missense_Mutation_p.C68F	NM_001033082	NP_001028254	P12524	MYCL1_HUMAN	l-myc-1 proto-oncogene isoform 1	68						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			lung(1)|liver(1)	2	all_cancers(7;1.73e-14)|all_lung(5;2.77e-17)|all_epithelial(6;6.81e-17)|Lung SC(1;2.85e-13)|Lung NSC(20;7.03e-07)|Ovarian(52;0.00167)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;1.51e-19)|Epithelial(16;3.36e-18)|all cancers(16;8.43e-17)|LUSC - Lung squamous cell carcinoma(16;0.000261)|Lung(16;0.000457)			GTCTCCGGTGCACCCTCCGGG	0.726			A		small cell lung 								4	4					0.00024832	0.000249432	1	1	0
CLDN19	149461	broad.mit.edu	37	1	43200781	43200781	+	Silent	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr1:43200781G>A	uc001cht.1	-	5	842	c.651C>T	c.(649-651)TCC>TCT	p.S217S	CLDN19_uc001chu.2_3'UTR|CLDN19_uc010ojv.1_3'UTR	NM_148960	NP_683763	Q8N6F1	CLD19_HUMAN	claudin 19 isoform a	217	Cytoplasmic (Potential).				calcium-independent cell-cell adhesion|response to stimulus|visual perception	basolateral plasma membrane|integral to membrane|tight junction	identical protein binding				0	Ovarian(52;0.00744)|all_hematologic(146;0.0977)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				GGCCCTTGGCGGAGGCGGGCA	0.552													9	10					0	0	1	0	0
FAM183A	440585	broad.mit.edu	37	1	43613744	43613744	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr1:43613744C>T	uc009vwo.2	+	1	151	c.122C>T	c.(121-123)CCC>CTC	p.P41L		NM_001101376	NP_001094846	A6NL82	F183A_HUMAN	hCG23177	41										ovary(3)	3						CACGTGAATCCCCTCCGCAAG	0.622													17	47					0	0	1	0	0
KIAA0467	23334	broad.mit.edu	37	1	43870123	43870123	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr1:43870123C>T	uc009vws.1	+	4	484	c.400C>T	c.(400-402)CGG>TGG	p.R134W	C1orf84_uc001cjh.2_Missense_Mutation_p.R132W|C1orf84_uc001cji.1_RNA			Q5T011	SZT2_HUMAN	Homo sapiens mRNA for KIAA0467 protein, partial cds.	134						peroxisome					0	all_hematologic(146;0.0958)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				CGGGCTGCTTCGGCCCTTCCG	0.547													28	43					0	0	1	0	0
SLC6A9	6536	broad.mit.edu	37	1	44468264	44468264	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr1:44468264G>A	uc001cll.2	-	7	1189	c.997C>T	c.(997-999)CGC>TGC	p.R333C	SLC6A9_uc009vxe.2_Missense_Mutation_p.R189C|SLC6A9_uc010okm.1_Missense_Mutation_p.R260C|SLC6A9_uc001clm.2_Missense_Mutation_p.R279C|SLC6A9_uc009vxd.2_RNA|SLC6A9_uc010okn.1_Missense_Mutation_p.R264C|SLC6A9_uc001cln.2_Missense_Mutation_p.R260C|SLC6A9_uc010oko.1_Missense_Mutation_p.R149C|SLC6A9_uc010okp.1_RNA	NM_201649	NP_964012	P48067	SC6A9_HUMAN	solute carrier family 6 member 9 isoform 2	333	Helical; Name=5; (Potential).					integral to plasma membrane|membrane fraction	glycine:sodium symporter activity|neurotransmitter:sodium symporter activity				0	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0511)			Glycine(DB00145)	GTCACTCCGCGGACAAACAGA	0.602													33	72					0	0	1	0	0
CYP4Z2P	163720	broad.mit.edu	37	1	47364537	47364537	+	RNA	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr1:47364537G>A	uc001cqo.1	-	2		c.338C>T			CYP4Z2P_uc009vyn.1_RNA	NR_002788				Homo sapiens cDNA FLJ40054 fis, clone TBAES2000315, weakly similar to CYTOCHROME P450 4A1 (EC 1.14.15.3).												0						GGAGAATCTTGACATAGTCTG	0.473													15	41					0	0	1	0	0
SLC1A7	6512	broad.mit.edu	37	1	53608038	53608038	+	Silent	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr1:53608038G>A	uc001cuy.2	-	1	252	c.84C>T	c.(82-84)ATC>ATT	p.I28I	SLC1A7_uc001cuz.3_Silent_p.I28I	NM_006671	NP_006662	O00341	EAA5_HUMAN	solute carrier family 1 (glutamate transporter),	28	Helical; (Potential).					integral to membrane|plasma membrane	high-affinity glutamate transmembrane transporter activity|sodium:dicarboxylate symporter activity			ovary(2)|large_intestine(1)	3				Colorectal(1306;0.234)	L-Glutamic Acid(DB00142)	GGCAGCCCACGATGACAGACA	0.597													4	5					0	0	1	0	0
RPE65	6121	broad.mit.edu	37	1	68910338	68910338	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr1:68910338C>T	uc001dei.1	-	5	425	c.371G>A	c.(370-372)CGA>CAA	p.R124Q		NM_000329	NP_000320	Q16518	RPE65_HUMAN	retinal pigment epithelium-specific protein	124					visual perception	cytoplasm|plasma membrane	all-trans-retinyl-palmitate hydrolase activity|metal ion binding|retinol isomerase activity			ovary(1)	1						CTCTACTCCTCGAAAGTAAGA	0.363													11	16					0	0	1	0	0
C1orf173	127254	broad.mit.edu	37	1	75055435	75055435	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr1:75055435C>T	uc001dgg.2	-	12	2275	c.2056G>A	c.(2056-2058)GAG>AAG	p.E686K	uc001dgh.2_Intron|C1orf173_uc001dgi.3_Missense_Mutation_p.E480K	NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	686	Glu-rich.									ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						CCGGACTTCTCAGATAAACCC	0.443													28	53					0	0	1	0	0
LPAR3	23566	broad.mit.edu	37	1	85279853	85279853	+	Silent	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr1:85279853C>T	uc001dkl.2	-	2	777	c.738G>A	c.(736-738)GGG>GGA	p.G246G	LPAR3_uc009wcj.1_Silent_p.G246G	NM_012152	NP_036284	Q9UBY5	LPAR3_HUMAN	lysophosphatidic acid receptor 3	246	Helical; Name=6; (Potential).				G-protein signaling, coupled to cyclic nucleotide second messenger|synaptic transmission	integral to plasma membrane|intracellular membrane-bounded organelle				lung(3)|ovary(2)	5						CCACAAACGCCCCTGCAAGGA	0.582													20	19					0	0	1	0	0
CLCA4	22802	broad.mit.edu	37	1	87031503	87031503	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr1:87031503G>A	uc009wcs.2	+	6	798	c.754G>A	c.(754-756)GAA>AAA	p.E252K	CLCA4_uc009wct.2_Missense_Mutation_p.E15K|CLCA4_uc009wcu.2_Missense_Mutation_p.E72K	NM_012128	NP_036260	Q14CN2	CLCA4_HUMAN	chloride channel accessory 4	252						apical plasma membrane|extracellular region|integral to plasma membrane	chloride channel activity			ovary(2)	2		Lung NSC(277;0.238)		all cancers(265;0.0202)|Epithelial(280;0.0404)		ATTTTGTAACGAAAAAACCCA	0.269													3	15					0	0	1	0	0
DPYD	1806	broad.mit.edu	37	1	97981281	97981281	+	Splice_Site	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr1:97981281C>T	uc001drv.2	-	13	1877	c.1740_splice	c.e13+1	p.K580_splice		NM_000110	NP_000101	Q12882	DPYD_HUMAN	dihydropyrimidine dehydrogenase isoform 1						'de novo' pyrimidine base biosynthetic process|purine base catabolic process|thymidine catabolic process|thymine catabolic process|UMP biosynthetic process|uracil catabolic process	cytosol	4 iron, 4 sulfur cluster binding|dihydroorotate oxidase activity|dihydropyrimidine dehydrogenase (NADP+) activity|electron carrier activity|flavin adenine dinucleotide binding|metal ion binding|NADP binding|protein homodimerization activity			ovary(3)|skin(3)|breast(2)	8		all_epithelial(167;0.000185)|all_lung(203;0.00318)|Lung NSC(277;0.00994)		Colorectal(170;0.0165)|Epithelial(280;0.0526)|all cancers(265;0.104)|READ - Rectum adenocarcinoma(84;0.171)|Lung(183;0.216)	Capecitabine(DB01101)|Enfuvirtide(DB00109)	TATTTTCTTACCTTATCAAGA	0.323													16	14					0	0	1	0	0
LOC647121	647121	broad.mit.edu	37	1	121307573	121307574	+	Missense_Mutation	DNP	GA	AT	AT			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr1:121307573_121307574GA>AT	uc009wht.1	+	2	300_301	c.271_272GA>AT	c.(271-273)GAA>ATA	p.E91I	LOC647121_uc001eiu.1_RNA					Homo sapiens cDNA FLJ46881 fis, clone UTERU3015647, moderately similar to Embigin precursor.												0						TGAGGGGAAAGAATTTGAGCAG	0.307													12	21					0	0	1	0	0
ITGA10	8515	broad.mit.edu	37	1	145539064	145539064	+	Silent	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr1:145539064C>T	uc001eoa.2	+	25	3080	c.3004C>T	c.(3004-3006)CTA>TTA	p.L1002L	NBPF10_uc001emp.3_Intron|ITGA10_uc010oyv.1_Silent_p.L871L|ITGA10_uc009wiw.2_Silent_p.L859L|ITGA10_uc010oyw.1_Silent_p.L947L	NM_003637	NP_003628	O75578	ITA10_HUMAN	integrin, alpha 10 precursor	1002	Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway	integrin complex	collagen binding|receptor activity			lung(2)|ovary(2)|kidney(2)|large_intestine(1)|skin(1)	8	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					CAATTACTTCCTATCACTGTC	0.532													52	51					0	0	1	0	0
CGN	57530	broad.mit.edu	37	1	151508126	151508126	+	Silent	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr1:151508126C>T	uc009wmw.2	+	17	3189	c.3045C>T	c.(3043-3045)GAC>GAT	p.D1015D	CGN_uc010pde.1_Silent_p.D9D	NM_020770	NP_065821	Q9P2M7	CING_HUMAN	cingulin	1009	Potential.					myosin complex|tight junction	actin binding|motor activity			ovary(2)|pancreas(1)	3	Ovarian(49;0.0273)|Hepatocellular(266;0.0997)|all_hematologic(923;0.127)|Melanoma(130;0.185)		LUSC - Lung squamous cell carcinoma(543;0.181)			CTCGGCAGGACCTGGAGTGTG	0.567													56	43					0	0	1	0	0
CGN	57530	broad.mit.edu	37	1	151508776	151508776	+	Silent	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr1:151508776C>T	uc009wmw.2	+	19	3405	c.3261C>T	c.(3259-3261)ATC>ATT	p.I1087I	CGN_uc010pde.1_Silent_p.I81I	NM_020770	NP_065821	Q9P2M7	CING_HUMAN	cingulin	1081	Potential.					myosin complex|tight junction	actin binding|motor activity			ovary(2)|pancreas(1)	3	Ovarian(49;0.0273)|Hepatocellular(266;0.0997)|all_hematologic(923;0.127)|Melanoma(130;0.185)		LUSC - Lung squamous cell carcinoma(543;0.181)			AACTATCCATCCAGATTGAAG	0.478													52	39					0	0	1	0	0
RPTN	126638	broad.mit.edu	37	1	152128617	152128617	+	Missense_Mutation	SNP	T	C	C	rs12117644		TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr1:152128617T>C	uc001ezs.1	-	3	1023	c.958A>G	c.(958-960)AGT>GGT	p.S320G		NM_001122965	NP_001116437	Q6XPR3	RPTN_HUMAN	repetin	320	Gln-rich.					proteinaceous extracellular matrix	calcium ion binding				0						TCCGTCTGACTGTAGTGGGAA	0.507													15	846					0	0	1	0	0
CRNN	49860	broad.mit.edu	37	1	152383335	152383335	+	Silent	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr1:152383335G>A	uc001ezx.2	-	3	297	c.223C>T	c.(223-225)CTG>TTG	p.L75L		NM_016190	NP_057274	Q9UBG3	CRNN_HUMAN	cornulin	75	EF-hand.				cell-cell adhesion|response to heat	cytoplasm|membrane	calcium ion binding			ovary(2)|skin(1)	3	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			ACTAAGACCAGGAATTCCTTG	0.537													62	41					0	0	1	0	0
DENND4B	9909	broad.mit.edu	37	1	153905117	153905117	+	Splice_Site	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr1:153905117C>T	uc001fdd.1	-	23	4160	c.3759_splice	c.e23+1	p.G1253_splice	uc001fdc.1_Intron	NM_014856	NP_055671	O75064	DEN4B_HUMAN	DENN/MADD domain containing 4B											ovary(1)	1	all_lung(78;2.89e-32)|Lung NSC(65;2.27e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.151)			CCAGCCCTTACCCCCATGTGC	0.632													35	39					0	0	1	0	0
CHRNB2	1141	broad.mit.edu	37	1	154544028	154544028	+	Silent	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr1:154544028C>T	uc001ffg.2	+	5	993	c.729C>T	c.(727-729)ATC>ATT	p.I243I		NM_000748	NP_000739	P17787	ACHB2_HUMAN	neuronal nicotinic acetylcholine receptor beta 2	243	Helical; (Potential).				B cell activation|behavioral response to nicotine|calcium ion transport|central nervous system projection neuron axonogenesis|lateral geniculate nucleus development|locomotory behavior|membrane depolarization|memory|negative regulation of action potential|optic nerve morphogenesis|positive regulation of B cell proliferation|positive regulation of dopamine secretion|regulation of circadian sleep/wake cycle, REM sleep|regulation of dendrite morphogenesis|regulation of dopamine metabolic process|regulation of synaptogenesis|response to cocaine|response to ethanol|response to hypoxia|sensory perception of pain|sensory perception of sound|smooth muscle contraction|social behavior|synaptic transmission involved in micturition|synaptic transmission, cholinergic|vestibulocochlear nerve development|visual learning|visual perception	cell junction|external side of plasma membrane|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity				0	all_lung(78;2.22e-29)|Lung NSC(65;3.66e-27)|Hepatocellular(266;0.0877)|all_hematologic(923;0.088)		LUSC - Lung squamous cell carcinoma(543;0.185)		Nicotine(DB00184)	ACCTCATCATCCCCTGTGTGC	0.562													69	152					0	0	1	0	0
RAG1AP1	55974	broad.mit.edu	37	1	155110084	155110084	+	Silent	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr1:155110084G>A	uc001fhj.3	+	4	430	c.330G>A	c.(328-330)CTG>CTA	p.L110L	RAG1AP1_uc010pey.1_RNA|RAG1AP1_uc001fhk.3_Silent_p.L55L|RAG1AP1_uc001fhl.3_Intron	NM_018845	NP_061333	Q9BRV3	SWET1_HUMAN	recombination activating gene 1 activating	110	Helical; Name=4; (Potential).				positive regulation of gene expression, epigenetic	Golgi membrane|integral to membrane|plasma membrane	glucoside transmembrane transporter activity				0	all_epithelial(22;4.71e-30)|all_lung(78;3.15e-27)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)		Epithelial(20;2.28e-10)|all cancers(21;6.16e-10)|BRCA - Breast invasive adenocarcinoma(34;0.000395)|LUSC - Lung squamous cell carcinoma(543;0.193)			TCCTTCTCCTGGGTTATGGCT	0.532													32	87					0	0	1	0	0
KIRREL	55243	broad.mit.edu	37	1	158058232	158058232	+	Silent	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr1:158058232G>A	uc001frn.3	+	8	1436	c.1032G>A	c.(1030-1032)AAG>AAA	p.K344K	KIRREL_uc010pib.1_Silent_p.K244K|KIRREL_uc009wsq.2_Silent_p.K180K|KIRREL_uc001fro.3_Silent_p.K142K	NM_018240	NP_060710	Q96J84	KIRR1_HUMAN	kin of IRRE like precursor	344	Extracellular (Potential).|Ig-like C2-type 4.					integral to membrane				ovary(1)	1	all_hematologic(112;0.0378)					GGACCAAAAAGGACTCAAATA	0.333													25	72					0	0	1	0	0
OR6Y1	391112	broad.mit.edu	37	1	158517650	158517650	+	Silent	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr1:158517650G>A	uc010pil.1	-	1	246	c.246C>T	c.(244-246)ATC>ATT	p.I82I		NM_001005189	NP_001005189	Q8NGX8	OR6Y1_HUMAN	olfactory receptor, family 6, subfamily Y,	82	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0378)					TCTTGGGGCTGATGACTGTGA	0.453													49	86					0	0	1	0	0
SPTA1	6708	broad.mit.edu	37	1	158587365	158587365	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr1:158587365C>T	uc001fst.1	-	47	6761	c.6562G>A	c.(6562-6564)GAA>AAA	p.E2188K		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	2188	Spectrin 21.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					GTTCCTGTTTCTTTGAGCAAT	0.338													19	12					0	0	1	0	0
SPTA1	6708	broad.mit.edu	37	1	158644451	158644451	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr1:158644451G>T	uc001fst.1	-	9	1326	c.1127C>A	c.(1126-1128)TCA>TAA	p.S376*		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	376	Spectrin 5.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					AAAGTCAGATGAAAATCGATG	0.453													92	77					2.3733e-33	2.41274e-33	1	1	0
OR10J3	441911	broad.mit.edu	37	1	159283485	159283485	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr1:159283485G>A	uc010piu.1	-	1	965	c.965C>T	c.(964-966)TCC>TTC	p.S322F		NM_001004467	NP_001004467	Q5JRS4	O10J3_HUMAN	olfactory receptor, family 10, subfamily J,	322	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	all_hematologic(112;0.0429)					AAACGCAAAGGAAAAGCCTTC	0.388													31	27					0	0	1	0	0
CCDC19	25790	broad.mit.edu	37	1	159850480	159850480	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr1:159850480C>T	uc001fui.2	-	8	926	c.908G>A	c.(907-909)CGA>CAA	p.R303Q	CCDC19_uc009wtb.2_RNA|CCDC19_uc001fuj.2_RNA|CCDC19_uc001fuk.2_Missense_Mutation_p.R218Q|CCDC19_uc001ful.2_Missense_Mutation_p.R218Q|CCDC19_uc009wtc.1_Missense_Mutation_p.R289Q	NM_012337	NP_036469	Q9UL16	CCD19_HUMAN	nasopharyngeal epithelium specific protein 1	303	Potential.					mitochondrion|soluble fraction				ovary(1)	1	all_hematologic(112;0.0597)		BRCA - Breast invasive adenocarcinoma(70;0.151)			TTGCTGCCTTCGTTCCATGTC	0.478													21	24					0	0	1	0	0
IGSF9	57549	broad.mit.edu	37	1	159912814	159912814	+	Silent	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr1:159912814G>A	uc001fur.2	-	3	384	c.186C>T	c.(184-186)TTC>TTT	p.F62F	IGSF9_uc001fuq.2_Silent_p.F62F	NM_001135050	NP_001128522	Q9P2J2	TUTLA_HUMAN	immunoglobulin superfamily, member 9 isoform a	62	Ig-like 1.|Extracellular (Potential).					cell junction|integral to membrane|synapse				ovary(2)|central_nervous_system(2)|large_intestine(1)	5	all_hematologic(112;0.0597)	Breast(1374;0.000126)	BRCA - Breast invasive adenocarcinoma(70;0.111)			TGGGAAGCAGGAATCCAAAGC	0.512													42	44					0	0	1	0	0
NHLH1	4807	broad.mit.edu	37	1	160340779	160340779	+	Silent	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr1:160340779C>T	uc001fwa.2	+	2	700	c.258C>T	c.(256-258)ATC>ATT	p.I86I		NM_005598	NP_005589	Q02575	HEN1_HUMAN	nescient helix loop helix 1	86	Basic motif.				cell differentiation|central nervous system development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(1)	1	all_cancers(52;7.11e-19)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			GAGAACGCATCCGCGTGGAAG	0.572													15	15					0	0	1	0	0
MPZ	4359	broad.mit.edu	37	1	161276155	161276155	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr1:161276155C>T	uc001gaf.3	-	4	615	c.578G>A	c.(577-579)TGG>TAG	p.W193*	MPZ_uc010pko.1_RNA	NM_000530	NP_000521	P25189	MYP0_HUMAN	myelin protein zero	183	Cytoplasmic (Potential).				synaptic transmission	integral to plasma membrane	structural molecule activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4	all_cancers(52;6.96e-17)|all_hematologic(112;0.093)	Breast(1374;0.181)	BRCA - Breast invasive adenocarcinoma(70;0.00376)			CCTGCGTAGCCAGCAGTACCG	0.647													56	75					0	0	1	0	0
C1orf111	284680	broad.mit.edu	37	1	162344172	162344172	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr1:162344172C>T	uc001gbx.2	-	3	516	c.452G>A	c.(451-453)CGA>CAA	p.R151Q		NM_182581	NP_872387	Q5T0L3	CA111_HUMAN	hypothetical protein LOC284680	151										ovary(1)	1	all_hematologic(112;0.15)		BRCA - Breast invasive adenocarcinoma(70;0.0938)			GGTGGCTTCTCGAGGGCAAGT	0.557													159	123					0	0	1	0	0
ALDH9A1	223	broad.mit.edu	37	1	165652225	165652225	+	Silent	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr1:165652225G>A	uc001gdh.1	-	3	555	c.450C>T	c.(448-450)TCC>TCT	p.S150S	ALDH9A1_uc010pky.1_Silent_p.S56S|ALDH9A1_uc010pkz.1_Silent_p.S140S|ALDH9A1_uc010pla.1_Silent_p.S56S	NM_000696	NP_000687	P49189	AL9A1_HUMAN	aldehyde dehydrogenase 9A1	126					carnitine biosynthetic process|cellular aldehyde metabolic process|hormone metabolic process|neurotransmitter biosynthetic process	cytosol|plasma membrane	3-chloroallyl aldehyde dehydrogenase activity|4-trimethylammoniobutyraldehyde dehydrogenase activity|aldehyde dehydrogenase (NAD) activity|aminobutyraldehyde dehydrogenase activity				0	all_hematologic(923;0.0773)|Acute lymphoblastic leukemia(8;0.155)				NADH(DB00157)	TACCAGCCATGGATGCAGCCA	0.388													40	22					0	0	1	0	0
C1orf114	57821	broad.mit.edu	37	1	169390724	169390724	+	Silent	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr1:169390724C>T	uc001gga.1	-	3	1113	c.945G>A	c.(943-945)GGG>GGA	p.G315G	C1orf114_uc001gfz.1_Silent_p.G315G|C1orf114_uc009wvq.1_Silent_p.G315G|C1orf114_uc001ggb.2_Silent_p.G315G|C1orf114_uc001ggc.1_Silent_p.G315G	NM_021179	NP_067002	Q5TID7	CA114_HUMAN	hypothetical protein LOC57821	315											0	all_hematologic(923;0.208)					GATTAGATTTCCCATTCCCTT	0.458													78	59					0	0	1	0	0
TDRD5	163589	broad.mit.edu	37	1	179603749	179603749	+	Silent	SNP	A	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr1:179603749A>T	uc001gnf.1	+	8	1534	c.1284A>T	c.(1282-1284)GTA>GTT	p.V428V	TDRD5_uc010pnp.1_Silent_p.V428V|TDRD5_uc001gnh.1_5'UTR	NM_173533	NP_775804	Q8NAT2	TDRD5_HUMAN	tudor domain containing 5	428					DNA methylation involved in gamete generation|P granule organization|spermatid development	chromatoid body|pi-body	nucleic acid binding			ovary(2)|skin(2)|central_nervous_system(1)	5						ATCTGGTGGTAAAGCCTTTAC	0.383													64	46					0	0	1	0	0
HMCN1	83872	broad.mit.edu	37	1	185988675	185988675	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr1:185988675C>T	uc001grq.1	+	35	5702	c.5473C>T	c.(5473-5475)CCT>TCT	p.P1825S		NM_031935	NP_114141	Q96RW7	HMCN1_HUMAN	hemicentin 1 precursor	1825					response to stimulus|visual perception	basement membrane	calcium ion binding			ovary(22)|skin(1)	23						AAATATAGTTCCTCCAACAAT	0.403													33	81					0	0	1	0	0
PRG4	10216	broad.mit.edu	37	1	186276981	186276981	+	Silent	SNP	A	G	G			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr1:186276981A>G	uc001gru.3	+	7	2181	c.2130A>G	c.(2128-2130)AAA>AAG	p.K710K	PRG4_uc001grt.3_Silent_p.K669K|PRG4_uc009wyl.2_Silent_p.K617K|PRG4_uc009wym.2_Silent_p.K576K|PRG4_uc010poo.1_Intron	NM_005807	NP_005798	Q92954	PRG4_HUMAN	proteoglycan 4 isoform A	710	59 X 8 AA repeats of K-X-P-X-P-T-T-X.|43; approximate.				cell proliferation|immune response	extracellular region	polysaccharide binding|protein binding|scavenger receptor activity			skin(1)	1						CTACCCCTAAAGGGACTGCTC	0.582													6	187					0	0	1	0	0
CFH	3075	broad.mit.edu	37	1	196712740	196712740	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr1:196712740G>A	uc001gtj.3	+	20	3532	c.3292G>A	c.(3292-3294)GAA>AAA	p.E1098K		NM_000186	NP_000177	P08603	CFAH_HUMAN	complement factor H isoform a precursor	1098	Sushi 18.				complement activation, alternative pathway	extracellular space				skin(4)|ovary(1)|breast(1)	6						AAACTGGACGGAACCACCTCA	0.353													64	149					0	0	1	0	0
CRB1	23418	broad.mit.edu	37	1	197297909	197297909	+	Missense_Mutation	SNP	G	A	A	rs62636261		TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr1:197297909G>A	uc001gtz.2	+	2	563	c.428G>A	c.(427-429)AGA>AAA	p.R143K	CRB1_uc010poz.1_Missense_Mutation_p.R74K|CRB1_uc001gty.1_Missense_Mutation_p.R143K|CRB1_uc010ppa.1_RNA|CRB1_uc009wza.2_Missense_Mutation_p.R143K|CRB1_uc010ppb.1_Missense_Mutation_p.R143K	NM_201253	NP_957705	P82279	CRUM1_HUMAN	crumbs homolog 1 precursor	143	Extracellular (Potential).|EGF-like 3.				cell-cell signaling|establishment or maintenance of cell polarity	apical plasma membrane|extracellular region|integral to membrane	calcium ion binding|protein binding			ovary(5)|skin(3)|large_intestine(1)	9						TATGCTGGAAGATTCTGTGAG	0.507													8	17					0	0	1	0	0
C1orf106	55765	broad.mit.edu	37	1	200881061	200881061	+	Silent	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr1:200881061C>T	uc001gvo.2	+	9	1725	c.1695C>T	c.(1693-1695)ATC>ATT	p.I565I	C1orf106_uc010ppm.1_Silent_p.I480I	NM_018265	NP_060735	Q3KP66	CA106_HUMAN	hypothetical protein LOC55765 isoform 1	565										skin(2)|ovary(1)	3						GCAGCCGCATCGTGCGGACGC	0.736													6	5					0	0	1	0	0
NAV1	89796	broad.mit.edu	37	1	201777224	201777224	+	Silent	SNP	T	C	C			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr1:201777224T>C	uc001gwu.2	+	17	4130	c.3783T>C	c.(3781-3783)GCT>GCC	p.A1261A	NAV1_uc001gwx.2_Silent_p.A870A|MIR1231_hsa-mir-1231|MI0006321_5'Flank	NM_020443	NP_065176	Q8NEY1	NAV1_HUMAN	neuron navigator 1	1264					cell differentiation|nervous system development	cytoplasm|microtubule	nucleoside-triphosphatase activity|nucleotide binding			central_nervous_system(3)|ovary(1)	4						CAGAGACTGCTTCACCCTCCA	0.547													61	131					0	0	1	0	0
USH2A	7399	broad.mit.edu	37	1	215987181	215987181	+	Silent	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr1:215987181G>A	uc001hku.1	-	49	10023	c.9636C>T	c.(9634-9636)ATC>ATT	p.I3212I		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	3212	Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		GAACAAACGGGATATACTTTT	0.418										HNSCC(13;0.011)			39	30					0	0	1	0	0
ZNF678	339500	broad.mit.edu	37	1	227842737	227842737	+	Silent	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr1:227842737G>A	uc001hqw.1	+	4	1131	c.786G>A	c.(784-786)GAG>GAA	p.E262E	ZNF678_uc009xet.1_Intron|ZNF678_uc009xeu.1_Intron	NM_178549	NP_848644	F5GXA7	F5GXA7_HUMAN	zinc finger protein 678	317					regulation of transcription, DNA-dependent	intracellular	nucleic acid binding|zinc ion binding			pancreas(1)	1		Prostate(94;0.0885)				ATACTGGAGAGAAACCTTACA	0.378													32	36					0	0	1	0	0
OBSCN	84033	broad.mit.edu	37	1	228476428	228476428	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr1:228476428G>A	uc009xez.1	+	38	10222	c.10178G>A	c.(10177-10179)TGG>TAG	p.W3393*	OBSCN_uc001hsn.2_Nonsense_Mutation_p.W3393*|OBSCN_uc001hsq.1_Nonsense_Mutation_p.W649*	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	3393	Ig-like 34.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				CCCGTGGAGTGGAGGAAGGGG	0.622													37	116					0	0	1	0	0
KIAA1804	84451	broad.mit.edu	37	1	233482282	233482282	+	Silent	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr1:233482282C>T	uc001hvt.3	+	2	1161	c.900C>T	c.(898-900)ACC>ACT	p.T300T	KIAA1804_uc001hvs.1_Silent_p.T300T	NM_032435	NP_115811	Q5TCX8	M3KL4_HUMAN	mixed lineage kinase 4	300	Protein kinase.				activation of JUN kinase activity|protein autophosphorylation		ATP binding|MAP kinase kinase kinase activity|protein homodimerization activity			lung(5)|central_nervous_system(2)|skin(1)	8		all_cancers(173;0.000405)|all_epithelial(177;0.0345)|Prostate(94;0.122)				ACAGGACCACCAAAATGAGCA	0.458													47	43					0	0	1	0	0
LYST	1130	broad.mit.edu	37	1	235866215	235866216	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr1:235866215_235866216GG>AA	uc001hxj.2	-	45	10380_10381	c.10205_10206CC>TT	c.(10204-10206)ACC>ATT	p.T3402I	LYST_uc001hxi.2_Missense_Mutation_p.T626I	NM_000081	NP_000072	Q99698	LYST_HUMAN	lysosomal trafficking regulator	3402	BEACH.				defense response to bacterium|defense response to protozoan|defense response to virus|endosome to lysosome transport via multivesicular body sorting pathway|leukocyte chemotaxis|mast cell secretory granule organization|melanosome organization|natural killer cell mediated cytotoxicity|protein transport	cytoplasm|microtubule cytoskeleton	protein binding			ovary(6)|breast(4)|central_nervous_system(2)	12	Ovarian(103;0.0634)|Breast(184;0.23)	all_cancers(173;0.00246)|Prostate(94;0.0771)|Acute lymphoblastic leukemia(190;0.228)	OV - Ovarian serous cystadenocarcinoma(106;0.000674)			TTTTTATCATGGTTTCTAGCGC	0.475									Chediak-Higashi_syndrome				135	121					0	0	1	0	0
NID1	4811	broad.mit.edu	37	1	236212073	236212073	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr1:236212073G>A	uc001hxo.2	-	2	544	c.442C>T	c.(442-444)CAG>TAG	p.Q148*	NID1_uc009xgd.2_Nonsense_Mutation_p.Q148*	NM_002508	NP_002499	P14543	NID1_HUMAN	nidogen 1 precursor	148	NIDO.				cell-matrix adhesion	basement membrane	calcium ion binding			large_intestine(1)|pancreas(1)	2	Ovarian(103;0.0544)|Breast(184;0.23)	all_cancers(173;0.00491)|Prostate(94;0.184)|Acute lymphoblastic leukemia(190;0.229)	OV - Ovarian serous cystadenocarcinoma(106;0.00162)		Becaplermin(DB00102)|Urokinase(DB00013)	CTACTAGGCTGGAAAGAGATC	0.587													19	32					0	0	1	0	0
FMN2	56776	broad.mit.edu	37	1	240256724	240256724	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr1:240256724C>T	uc010pyd.1	+	1	1540	c.1315C>T	c.(1315-1317)CAG>TAG	p.Q439*	FMN2_uc010pye.1_Nonsense_Mutation_p.Q439*	NM_020066	NP_064450	Q9NZ56	FMN2_HUMAN	formin 2	439					actin cytoskeleton organization|establishment of meiotic spindle localization|intracellular signal transduction|meiotic chromosome movement towards spindle pole|meiotic metaphase I|multicellular organismal development|oogenesis|polar body extrusion after meiotic divisions		actin binding			ovary(4)|pancreas(3)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Ovarian(103;0.127)	all_cancers(173;0.013)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)			GTCCCCTAATCAGAGCCCCAG	0.662													75	68					0	0	1	0	0
ZNF695	57116	broad.mit.edu	37	1	247150500	247150500	+	Missense_Mutation	SNP	A	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr1:247150500A>T	uc009xgu.2	-	4	1462	c.1317T>A	c.(1315-1317)GAT>GAA	p.D439E	ZNF695_uc001ica.2_Intron|ZNF695_uc001icb.1_Intron|ZNF695_uc009xgt.1_Intron|ZNF695_uc001ibx.2_Intron|ZNF695_uc001iby.2_Intron	NM_020394	NP_065127	Q8IW36	ZN695_HUMAN	zinc finger protein SBZF3	439	C2H2-type 11.				regulation of transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding				0	all_cancers(71;4.01e-05)|all_epithelial(71;6.72e-06)|Ovarian(71;0.0173)|Breast(184;0.0318)|all_lung(81;0.0458)|Lung NSC(105;0.0518)	all_cancers(173;0.0266)	OV - Ovarian serous cystadenocarcinoma(106;0.00271)			TGCCACATTCATCACATTTGT	0.368													3	64					0	0	1	0	0
OR2T1	26696	broad.mit.edu	37	1	248570095	248570095	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr1:248570095C>T	uc010pzm.1	+	1	800	c.800C>T	c.(799-801)TCC>TTC	p.S267F		NM_030904	NP_112166	O43869	OR2T1_HUMAN	olfactory receptor, family 2, subfamily T,	267	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			GTCCTTGCTTCCTATGCCCGA	0.507													53	42					0	0	1	0	0
OR2G6	391211	broad.mit.edu	37	1	248685000	248685000	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr1:248685000C>T	uc001ien.1	+	1	53	c.53C>T	c.(52-54)TCA>TTA	p.S18L		NM_001013355	NP_001013373	Q5TZ20	OR2G6_HUMAN	olfactory receptor, family 2, subfamily G,	18	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)	all_cancers(173;0.0156)	OV - Ovarian serous cystadenocarcinoma(106;0.0265)			CTGGGATTTTCAGATCAGCCT	0.428													84	78					0	0	1	0	0
KIAA1217	56243	broad.mit.edu	37	10	24790364	24790365	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr10:24790364_24790365CC>TT	uc001iru.3	+	9	2294_2295	c.1891_1892CC>TT	c.(1891-1893)CCC>TTC	p.P631F	KIAA1217_uc001irs.2_Missense_Mutation_p.P551F|KIAA1217_uc001irt.3_Missense_Mutation_p.P596F|KIAA1217_uc010qcy.1_Missense_Mutation_p.P596F|KIAA1217_uc010qcz.1_Missense_Mutation_p.P596F|KIAA1217_uc001irv.1_Missense_Mutation_p.P446F|KIAA1217_uc010qda.1_RNA|KIAA1217_uc001irw.2_Missense_Mutation_p.P314F|KIAA1217_uc001irz.2_Missense_Mutation_p.P314F|KIAA1217_uc001irx.2_Missense_Mutation_p.P314F|KIAA1217_uc001iry.2_Missense_Mutation_p.P314F	NM_019590	NP_062536	Q5T5P2	SKT_HUMAN	sickle tail isoform 1	631					embryonic skeletal system development	cytoplasm				ovary(5)|skin(2)	7						CACGGTGCCTCCCAGCCAGCCT	0.594													22	7					0	0	1	0	0
ANKRD30A	91074	broad.mit.edu	37	10	37430707	37430707	+	Silent	SNP	A	G	G			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr10:37430707A>G	uc001iza.1	+	7	813	c.714A>G	c.(712-714)ACA>ACG	p.T238T		NM_052997	NP_443723	Q9BXX3	AN30A_HUMAN	ankyrin repeat domain 30A	294						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(7)|breast(1)|skin(1)	9						CACCTGACACAGCTGAAAGCT	0.463													3	32					0	0	1	0	0
BMS1	9790	broad.mit.edu	37	10	43318571	43318571	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr10:43318571G>A	uc001jaj.2	+	20	3496	c.3138G>A	c.(3136-3138)ATG>ATA	p.M1046I		NM_014753	NP_055568	Q14692	BMS1_HUMAN	BMS1-like, ribosome assembly protein	1046					ribosome assembly	nucleolus	ATP binding|GTP binding|GTPase activity			ovary(2)|upper_aerodigestive_tract(1)	3						TGTAGGGAATGTTTAATTCTG	0.393													4	77					0	0	1	0	0
FAM13C	220965	broad.mit.edu	37	10	61043208	61043208	+	Splice_Site	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr10:61043208C>T	uc001jkn.2	-	7	642	c.508_splice	c.e7-1	p.E170_splice	FAM13C_uc001jko.2_Splice_Site_p.E170_splice|FAM13C_uc010qid.1_Splice_Site_p.E87_splice|FAM13C_uc010qie.1_Splice_Site_p.E87_splice|FAM13C_uc010qif.1_Splice_Site_p.E192_splice|FAM13C_uc001jkp.2_Splice_Site_p.E87_splice	NM_198215	NP_937858	Q8NE31	FA13C_HUMAN	hypothetical protein LOC220965 isoform 1											ovary(2)	2						CAGCTTCTTCCTGGTTTGTTA	0.522													46	9					0	0	1	0	0
ANK3	288	broad.mit.edu	37	10	61832104	61832104	+	Silent	SNP	T	G	G			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr10:61832104T>G	uc001jky.2	-	37	8727	c.8535A>C	c.(8533-8535)GGA>GGC	p.G2845G	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	2845					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						TGTCCCATGGTCCCCTAGTTG	0.408													32	9					0	0	1	0	0
MYPN	84665	broad.mit.edu	37	10	69948769	69948769	+	Silent	SNP	C	T	T	rs151242284		TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr10:69948769C>T	uc001jnm.3	+	14	2996	c.2811C>T	c.(2809-2811)ATC>ATT	p.I937I	MYPN_uc001jnn.3_Silent_p.I662I|MYPN_uc001jno.3_Silent_p.I937I|MYPN_uc009xpt.2_Silent_p.I937I|MYPN_uc010qit.1_Silent_p.I643I|MYPN_uc010qiu.1_RNA	NM_032578	NP_115967	Q86TC9	MYPN_HUMAN	myopalladin	937						nucleus|sarcomere	actin binding	p.I937I(1)		ovary(3)|skin(2)	5						ATGATGAGATCCCCACGGGCA	0.438													31	1					0	0	1	0	0
PRF1	5551	broad.mit.edu	37	10	72360304	72360304	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr10:72360304G>A	uc009xqg.2	-	2	516	c.355C>T	c.(355-357)CGG>TGG	p.R119W	PRF1_uc001jrf.3_Missense_Mutation_p.R119W	NM_001083116	NP_001076585	P14222	PERF_HUMAN	perforin 1 precursor	119	MACPF.				apoptosis|cellular defense response|cytolysis|defense response to tumor cell|defense response to virus|immune response to tumor cell|protein homooligomerization	cytolytic granule|endosome lumen|extracellular region|integral to membrane|plasma membrane	calcium ion binding|protein binding|wide pore channel activity			large_intestine(1)|ovary(1)|central_nervous_system(1)	3						GCCGCATCCCGGGCCACAGCT	0.652			M			various leukaemia|lymphoma	Type 2 familial hemophagocytic lymphohistiocytosis		Familial_Hemophagocytic_Lymphohistiocytosis				6	2					0	0	1	0	0
CDH23	64072	broad.mit.edu	37	10	73537502	73537502	+	Silent	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr10:73537502C>T	uc001jrx.3	+	37	5288	c.4911C>T	c.(4909-4911)CCC>CCT	p.P1637P		NM_022124	NP_071407	Q9H251	CAD23_HUMAN	cadherin-like 23 isoform 1 precursor	1637	Cadherin 16.|Extracellular (Potential).				calcium ion transport|calcium-dependent cell-cell adhesion|cytosolic calcium ion homeostasis|equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	cytosol|integral to membrane|plasma membrane|stereocilium	calcium ion binding|protein binding			central_nervous_system(5)|large_intestine(4)|ovary(2)	11						TCCAGCAGCCCCACTATGAGG	0.582													9	2					0	0	1	0	0
CDH23	64072	broad.mit.edu	37	10	73538035	73538035	+	Silent	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr10:73538035C>T	uc001jrx.3	+	38	5534	c.5157C>T	c.(5155-5157)ATC>ATT	p.I1719I		NM_022124	NP_071407	Q9H251	CAD23_HUMAN	cadherin-like 23 isoform 1 precursor	1719	Cadherin 16.|Extracellular (Potential).				calcium ion transport|calcium-dependent cell-cell adhesion|cytosolic calcium ion homeostasis|equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	cytosol|integral to membrane|plasma membrane|stereocilium	calcium ion binding|protein binding			central_nervous_system(5)|large_intestine(4)|ovary(2)	11						AGTGCCCCATCTTATCCCACC	0.612													32	9					0	0	1	0	0
CYP2C18	1562	broad.mit.edu	37	10	96466555	96466555	+	Silent	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr10:96466555C>T	uc001kjv.3	+	5	983	c.657C>T	c.(655-657)TTC>TTT	p.F219F	CYP2C18_uc001kjw.3_Intron|CYP2C19_uc009xus.1_Intron|CYP2C19_uc010qny.1_5'UTR	NM_000772	NP_000763	P33260	CP2CI_HUMAN	cytochrome P450 family 2 subfamily C polypeptide	219					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(3)|lung(1)|skin(1)	5		Colorectal(252;0.09)		all cancers(201;2.8e-06)|KIRC - Kidney renal clear cell carcinoma(50;0.0646)|Kidney(138;0.0805)		GCAATAATTTCCCTGCTCTCA	0.299													5	0					0	0	1	0	0
PSD	5662	broad.mit.edu	37	10	104176151	104176151	+	Silent	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr10:104176151G>A	uc001kvg.1	-	2	1172	c.645C>T	c.(643-645)TTC>TTT	p.F215F	PSD_uc001kvh.1_5'UTR|PSD_uc009xxd.1_Silent_p.F215F|PSD_uc001kvi.1_Silent_p.F215F|FBXL15_uc001kvj.1_5'Flank	NM_002779	NP_002770	A5PKW4	PSD1_HUMAN	pleckstrin and Sec7 domain containing	215					regulation of ARF protein signal transduction	cytoplasm|plasma membrane|ruffle	ARF guanyl-nucleotide exchange factor activity|signal transducer activity			breast(2)|urinary_tract(1)	3				Epithelial(162;1.27e-08)|all cancers(201;2.85e-07)		CCTGGTTCAGGAATCCAGTGT	0.622													4	0					0	0	1	0	0
SLK	9748	broad.mit.edu	37	10	105762077	105762077	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr10:105762077C>T	uc001kxo.1	+	9	1175	c.1141C>T	c.(1141-1143)CTT>TTT	p.L381F	SLK_uc001kxp.1_Missense_Mutation_p.L381F	NM_014720	NP_055535	Q9H2G2	SLK_HUMAN	serine/threonine kinase 2	381	Glu-rich.				apoptosis|nucleotide-excision repair	cytoplasm|plasma membrane	ATP binding|DNA binding|nuclease activity|protein serine/threonine kinase activity			ovary(2)|stomach(2)|skin(2)|lung(1)|kidney(1)	8		Colorectal(252;0.178)		Epithelial(162;5.81e-10)|all cancers(201;2.35e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0165)		CAGCAAAATTCTTAATGAAAA	0.363													35	12					0	0	1	0	0
ATRNL1	26033	broad.mit.edu	37	10	117278814	117278814	+	Silent	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr10:117278814G>A	uc001lcg.2	+	25	4082	c.3696G>A	c.(3694-3696)CAG>CAA	p.Q1232Q	ATRNL1_uc010qsm.1_Silent_p.Q361Q|ATRNL1_uc010qsn.1_RNA	NM_207303	NP_997186	Q5VV63	ATRN1_HUMAN	attractin-like 1 precursor	1232	Helical; (Potential).					integral to membrane	sugar binding			ovary(5)|lung(1)|central_nervous_system(1)	7		all_lung(145;0.0686)|Breast(234;0.0969)|Lung NSC(174;0.17)|Colorectal(252;0.234)		Epithelial(162;0.00031)|all cancers(201;0.000753)|LUSC - Lung squamous cell carcinoma(1;0.0515)|Lung(30;0.0827)		ACCTTGTGCAGTTTTTTGTCA	0.328													7	4					0	0	1	0	0
TACC2	10579	broad.mit.edu	37	10	123844359	123844359	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr10:123844359C>T	uc001lfv.2	+	4	2704	c.2344C>T	c.(2344-2346)CCC>TCC	p.P782S	TACC2_uc001lfw.2_Intron|TACC2_uc009xzx.2_Missense_Mutation_p.P782S|TACC2_uc010qtv.1_Missense_Mutation_p.P782S	NM_206862	NP_996744	O95359	TACC2_HUMAN	transforming, acidic coiled-coil containing	782						microtubule organizing center|nucleus	nuclear hormone receptor binding			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10		all_neural(114;0.0656)|Lung NSC(174;0.136)|all_lung(145;0.17)|Breast(234;0.197)				GCCACATCCCCCCCAGGGGGA	0.632													47	9					0	0	1	0	0
CPXM2	119587	broad.mit.edu	37	10	125539746	125539746	+	Silent	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr10:125539746C>T	uc001lhk.1	-	7	1240	c.915G>A	c.(913-915)CGG>CGA	p.R305R	CPXM2_uc001lhj.2_RNA	NM_198148	NP_937791	Q8N436	CPXM2_HUMAN	carboxypeptidase X (M14 family), member 2	305					cell adhesion|proteolysis	extracellular space	metallocarboxypeptidase activity|zinc ion binding			ovary(2)	2		all_lung(145;0.174)|Colorectal(57;0.178)|Glioma(114;0.222)|all_neural(114;0.226)|Lung NSC(174;0.233)		COAD - Colon adenocarcinoma(40;0.212)|Colorectal(40;0.237)		TCATCTCGTTCCGGCGGTGAT	0.438													45	11					0	0	1	0	0
Unknown	0	broad.mit.edu	37	10	134628230	134628230	+	Silent	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr10:134628230G>A	uc010qux.1	-	44	6387	c.6387C>T	c.(6385-6387)ATC>ATT	p.I2129I		NM_017609	NP_060079			Homo sapiens cDNA, FLJ17989.																		AGTCAGGGGGGATGGTCCGGG	0.647													8	0					0	0	1	0	0
PKP3	11187	broad.mit.edu	37	11	400083	400083	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr11:400083C>T	uc001lpc.2	+	6	1466	c.1390C>T	c.(1390-1392)CTC>TTC	p.L464F		NM_007183	NP_009114	Q9Y446	PKP3_HUMAN	plakophilin 3	464	ARM 4.				cell adhesion	desmosome|nucleus	binding			skin(1)	1		all_cancers(49;3.02e-09)|all_epithelial(84;2.09e-06)|Breast(177;0.000162)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.0538)|all_lung(207;0.0713)		all cancers(45;1.56e-27)|Epithelial(43;9.31e-27)|OV - Ovarian serous cystadenocarcinoma(40;1.11e-20)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.0182)|LUSC - Lung squamous cell carcinoma(625;0.0703)		GGGTCCCCCCCTCATCCAGCA	0.677													7	5					0	0	1	0	0
MUC6	4588	broad.mit.edu	37	11	1017820	1017820	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr11:1017820C>T	uc001lsw.2	-	31	5032	c.4981G>A	c.(4981-4983)GCC>ACC	p.A1661T		NM_005961	NP_005952	Q6W4X9	MUC6_HUMAN	mucin 6, gastric	1661	Pro-rich.|Thr-rich.|1; truncated.|Approximate repeats.				maintenance of gastrointestinal epithelium	extracellular region	extracellular matrix structural constituent			ovary(1)	1		all_cancers(49;3.3e-08)|all_epithelial(84;5.08e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		all cancers(45;1.24e-24)|BRCA - Breast invasive adenocarcinoma(625;0.00031)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)		GACCCTGTGGCCTTGAGCGTT	0.567													61	621					0	0	1	0	0
BRSK2	9024	broad.mit.edu	37	11	1467007	1467007	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr11:1467007G>A	uc001lti.2	+	12	1482	c.1096G>A	c.(1096-1098)GAC>AAC	p.D366N	BRSK2_uc009ycv.1_Missense_Mutation_p.D366N|BRSK2_uc001lth.1_Missense_Mutation_p.D366N|BRSK2_uc001ltj.2_Missense_Mutation_p.D366N|BRSK2_uc001ltk.2_RNA|BRSK2_uc001ltl.2_Missense_Mutation_p.D366N|BRSK2_uc001ltm.2_Missense_Mutation_p.D412N|BRSK2_uc001ltn.2_RNA|BRSK2_uc010qwx.1_RNA	NM_003957	NP_003948	Q8IWQ3	BRSK2_HUMAN	BR serine/threonine kinase 2	366					establishment of cell polarity|neuron differentiation		ATP binding|magnesium ion binding|protein serine/threonine kinase activity				0		all_epithelial(84;4.17e-05)|Breast(177;0.000307)|Ovarian(85;0.0014)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00144)|Lung(200;0.0713)|LUSC - Lung squamous cell carcinoma(625;0.0842)		GAAGCGTGTGGACTCCCCGAT	0.716													34	51					0	0	1	0	0
KRTAP5-2	440021	broad.mit.edu	37	11	1619212	1619212	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr11:1619212G>A	uc001ltv.2	-	1	313	c.269C>T	c.(268-270)TCC>TTC	p.S90F	LOC338651_uc009ycx.1_Silent_p.R104R|LOC338651_uc001ltt.1_RNA	NM_001004325	NP_001004325	Q701N4	KRA52_HUMAN	keratin associated protein 5-2	90	6 X 4 AA repeats of C-C-X-P.					keratin filament					0		all_epithelial(84;0.00018)|Ovarian(85;0.0014)|Breast(177;0.00147)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.000614)|Lung(200;0.0681)|LUSC - Lung squamous cell carcinoma(625;0.082)		GCCCCCACAGGAGCCACAGCC	0.657													65	192					0	0	1	0	0
OR52R1	119695	broad.mit.edu	37	11	4825555	4825555	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr11:4825555C>T	uc010qym.1	-	1	293	c.293G>A	c.(292-294)GGA>GAA	p.G98E		NM_001005177	NP_001005177	Q8NGF1	O52R1_HUMAN	olfactory receptor, family 52, subfamily R,	19	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Medulloblastoma(188;0.0025)|Breast(177;0.0184)|all_neural(188;0.0227)		Epithelial(150;4.77e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00435)|LUSC - Lung squamous cell carcinoma(625;0.19)		GCCTGGGATTCCAAGCAGGAT	0.502													28	23					0	0	1	0	0
OR52E4	390081	broad.mit.edu	37	11	5905982	5905982	+	Missense_Mutation	SNP	A	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr11:5905982A>T	uc010qzs.1	+	1	460	c.460A>T	c.(460-462)AAT>TAT	p.N154Y	TRIM5_uc001mbq.1_Intron	NM_001005165	NP_001005165	Q8NGH9	O52E4_HUMAN	olfactory receptor, family 52, subfamily E,	154	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;1.24e-08)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TGTTGGAAGAAATTTAGTTCT	0.468													47	51					0	0	1	0	0
NELL1	4745	broad.mit.edu	37	11	20948884	20948884	+	Missense_Mutation	SNP	T	G	G			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr11:20948884T>G	uc001mqe.2	+	8	943	c.790T>G	c.(790-792)TTG>GTG	p.L264V	NELL1_uc001mqf.2_Missense_Mutation_p.L264V|NELL1_uc009yid.2_Missense_Mutation_p.L292V|NELL1_uc010rdo.1_Missense_Mutation_p.L207V|NELL1_uc010rdp.1_Missense_Mutation_p.L24V	NM_006157	NP_006148	Q92832	NELL1_HUMAN	nel-like 1 isoform 1 precursor	264					cell adhesion|nervous system development	extracellular region	calcium ion binding|structural molecule activity			ovary(2)|large_intestine(1)	3						ACTTAGTCAATTGGAAAACTG	0.393													27	34					0	0	1	0	0
MUC15	143662	broad.mit.edu	37	11	26582647	26582647	+	Missense_Mutation	SNP	T	C	C			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr11:26582647T>C	uc001mqx.2	-	4	1236	c.970A>G	c.(970-972)ATG>GTG	p.M324V	ANO3_uc010rdr.1_Intron|ANO3_uc001mqt.3_Intron|ANO3_uc010rds.1_Intron|ANO3_uc010rdt.1_Intron|MUC15_uc001mqw.2_Missense_Mutation_p.M351V|MUC15_uc001mqy.2_Missense_Mutation_p.M301V	NM_145650	NP_663625	Q8N387	MUC15_HUMAN	mucin 15 isoform b	324	Cytoplasmic (Potential).					extracellular region|integral to membrane|plasma membrane				ovary(1)|central_nervous_system(1)|pancreas(1)	3						ATGTCATCCATAGGAATGCCA	0.393													44	50					0	0	1	0	0
FIBIN	387758	broad.mit.edu	37	11	27016220	27016220	+	Silent	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr11:27016220C>T	uc001mrd.2	+	1	593	c.147C>T	c.(145-147)CCC>CCT	p.P49P		NM_203371	NP_976249	Q8TAL6	FIBIN_HUMAN	fin bud initiation factor homolog precursor	49						extracellular region|Golgi apparatus					0						ACGATGACCCCGAGAAGTGCC	0.627													19	30					0	0	1	0	0
BBOX1	8424	broad.mit.edu	37	11	27077173	27077173	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr11:27077173G>A	uc001mre.1	+	3	564	c.196G>A	c.(196-198)GGC>AGC	p.G66S	BBOX1_uc009yih.1_Missense_Mutation_p.G66S|BBOX1_uc001mrg.1_Missense_Mutation_p.G66S	NM_003986	NP_003977	O75936	BODG_HUMAN	gamma-butyrobetaine dioxygenase	66					carnitine biosynthetic process	actin cytoskeleton|cytosol|intracellular membrane-bounded organelle	gamma-butyrobetaine dioxygenase activity|iron ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|zinc ion binding			ovary(1)	1					Succinic acid(DB00139)|Vitamin C(DB00126)	TGGAATTAAAGGCTTGATATT	0.378													6	10					0	0	1	0	0
SLC35C1	55343	broad.mit.edu	37	11	45832766	45832766	+	Silent	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr11:45832766G>A	uc001nbp.2	+	2	1687	c.975G>A	c.(973-975)ACG>ACA	p.T325T	SLC35C1_uc001nbo.2_Silent_p.T312T|SLC35C1_uc010rgm.1_Silent_p.T312T	NM_018389	NP_060859	Q96A29	FUCT1_HUMAN	GDP-fucose transporter 1 isoform a	325						Golgi membrane|integral to membrane	GDP-fucose transmembrane transporter activity				0				GBM - Glioblastoma multiforme(35;0.227)		TCTGGTGGACGAGCAACATGA	0.632													15	16					0	0	1	0	0
LRP4	4038	broad.mit.edu	37	11	46911653	46911653	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr11:46911653G>A	uc001ndn.3	-	15	2080	c.1934C>T	c.(1933-1935)GCC>GTC	p.A645V		NM_002334	NP_002325	O75096	LRP4_HUMAN	low density lipoprotein receptor-related protein	645	Extracellular (Potential).|LDL-receptor class B 4.				endocytosis|negative regulation of canonical Wnt receptor signaling pathway|Wnt receptor signaling pathway	integral to membrane	calcium ion binding|receptor activity			skin(2)|upper_aerodigestive_tract(1)|ovary(1)	4				Lung(87;0.159)		CACTGTGATGGCGAAGGGATG	0.547											OREG0020948	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	54	86					0	0	1	0	0
NUP160	23279	broad.mit.edu	37	11	47834483	47834483	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr11:47834483G>A	uc001ngm.2	-	15	1988	c.1903C>T	c.(1903-1905)CCG>TCG	p.P635S	NUP160_uc009ylw.2_RNA	NM_015231	NP_056046	Q12769	NU160_HUMAN	nucleoporin 160kDa	635					carbohydrate metabolic process|glucose transport|mitotic prometaphase|mRNA export from nucleus|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|Nup107-160 complex	nucleocytoplasmic transporter activity|protein binding			ovary(4)|lung(1)|central_nervous_system(1)|skin(1)	7						GCCTTTTCCGGAGACTGTAGG	0.378													25	39					0	0	1	0	0
OR4C46	119749	broad.mit.edu	37	11	51515583	51515583	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr11:51515583G>A	uc010ric.1	+	1	302	c.302G>A	c.(301-303)GGA>GAA	p.G101E		NM_001004703	NP_001004703	A6NHA9	O4C46_HUMAN	olfactory receptor, family 4, subfamily C,	101	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						CAAGTCTTTGGAGAACATTTC	0.463													40	69					0	0	1	0	0
TRIM48	79097	broad.mit.edu	37	11	55032631	55032631	+	Silent	SNP	A	G	G	rs143400868	by1000genomes	TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr11:55032631A>G	uc010rid.1	+	2	386	c.300A>G	c.(298-300)CTA>CTG	p.L100L		NM_024114	NP_077019	Q8IWZ4	TRI48_HUMAN	tripartite motif-containing 48	84						intracellular	zinc ion binding				0						GTCTCTGGCTATTCCTGAGCT	0.463													20	32					0	0	1	0	0
OR4C15	81309	broad.mit.edu	37	11	55322128	55322128	+	Missense_Mutation	SNP	T	G	G			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr11:55322128T>G	uc010rig.1	+	1	346	c.346T>G	c.(346-348)TTG>GTG	p.L116V		NM_001001920	NP_001001920	Q8NGM1	OR4CF_HUMAN	olfactory receptor, family 4, subfamily C,	62	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						GTACTTCTTCTTGGGCTTCCT	0.448										HNSCC(20;0.049)			66	67					0	0	1	0	0
OR5AS1	219447	broad.mit.edu	37	11	55798206	55798206	+	Silent	SNP	C	T	T	rs142110904	byFrequency	TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr11:55798206C>T	uc010riw.1	+	1	312	c.312C>T	c.(310-312)TTC>TTT	p.F104F		NM_001001921	NP_001001921	Q8N127	O5AS1_HUMAN	olfactory receptor, family 5, subfamily AS,	104	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|liver(1)|skin(1)	5	Esophageal squamous(21;0.00693)					TGTTTTTCTTCGCTTCTTTTG	0.458													10	24					0	0	1	0	0
OR5T3	390154	broad.mit.edu	37	11	56019754	56019754	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr11:56019754G>A	uc010rjd.1	+	1	79	c.79G>A	c.(79-81)GAT>AAT	p.D27N		NM_001004747	NP_001004747	Q8NGG3	OR5T3_HUMAN	olfactory receptor, family 5, subfamily T,	27	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Esophageal squamous(21;0.00448)					ATCAGGTTTGGATATATACAG	0.358													19	27					0	0	1	0	0
OR5M9	390162	broad.mit.edu	37	11	56230698	56230698	+	Silent	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr11:56230698G>A	uc010rjj.1	-	1	180	c.180C>T	c.(178-180)TTC>TTT	p.F60F		NM_001004743	NP_001004743	Q8NGP3	OR5M9_HUMAN	olfactory receptor, family 5, subfamily M,	60	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4	Esophageal squamous(21;0.00448)					GATGACTCAGGAAAAAGTACA	0.423													21	26					0	0	1	0	0
OR5M9	390162	broad.mit.edu	37	11	56230746	56230746	+	Silent	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr11:56230746G>A	uc010rjj.1	-	1	132	c.132C>T	c.(130-132)ATC>ATT	p.I44I		NM_001004743	NP_001004743	Q8NGP3	OR5M9_HUMAN	olfactory receptor, family 5, subfamily M,	44	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4	Esophageal squamous(21;0.00448)					TAATCAAAATGATCATACCAA	0.473													18	20					0	0	1	0	0
P2RX3	5024	broad.mit.edu	37	11	57114648	57114648	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr11:57114648G>A	uc001nju.2	+	3	390	c.314G>A	c.(313-315)GGA>GAA	p.G105E		NM_002559	NP_002550	P56373	P2RX3_HUMAN	purinergic receptor P2X3	105	Extracellular (Potential).				positive regulation of calcium ion transport into cytosol|positive regulation of calcium-mediated signaling	integral to plasma membrane	ATP binding|extracellular ATP-gated cation channel activity|purinergic nucleotide receptor activity				0						CAGATGCAAGGATTCTGCCCA	0.488													20	29					0	0	1	0	0
MS4A8B	83661	broad.mit.edu	37	11	60468341	60468341	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr11:60468341C>T	uc001npv.2	+	2	211	c.8C>T	c.(7-9)TCG>TTG	p.S3L	MS4A8B_uc009yne.1_Missense_Mutation_p.S3L	NM_031457	NP_113645	Q9BY19	M4A8B_HUMAN	membrane-spanning 4-domains, subfamily A, member	3	Cytoplasmic (Potential).					integral to membrane	receptor activity				0						AGCATGAATTCGATGACTTCA	0.458													74	88					0	0	1	0	0
CD6	923	broad.mit.edu	37	11	60786761	60786761	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr11:60786761G>A	uc001nqq.2	+	13	2201	c.1978G>A	c.(1978-1980)GAT>AAT	p.D660N	CD6_uc001nqr.2_Missense_Mutation_p.D593N|CD6_uc001nqs.2_RNA|CD6_uc001nqt.2_Missense_Mutation_p.D584N	NM_006725	NP_006716	P30203	CD6_HUMAN	CD6 molecule precursor	660	Cytoplasmic (Potential).				cell adhesion	cell surface|integral to plasma membrane	scavenger receptor activity			pancreas(1)	1						CACCGACAACGATGACTACGA	0.652													23	23					0	0	1	0	0
CDC42BPG	55561	broad.mit.edu	37	11	64599020	64599020	+	Silent	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr11:64599020G>A	uc001obs.3	-	28	3261	c.3261C>T	c.(3259-3261)AAC>AAT	p.N1087N		NM_017525	NP_059995	Q6DT37	MRCKG_HUMAN	CDC42 binding protein kinase gamma (DMPK-like)	1087					actin cytoskeleton reorganization|intracellular signal transduction	cell leading edge|centrosome	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity|small GTPase regulator activity			lung(3)|central_nervous_system(1)	4						GCGGCAGCCCGTTGTCGTAAG	0.677											OREG0004016	type=REGULATORY REGION|Gene=CDC42BPG|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	36	71					0	0	1	0	0
ATG2A	23130	broad.mit.edu	37	11	64665771	64665771	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr11:64665771G>A	uc001obx.2	-	33	4850	c.4735C>T	c.(4735-4737)CGC>TGC	p.R1579C	ATG2A_uc001obw.2_Missense_Mutation_p.R344C	NM_015104	NP_055919	Q2TAZ0	ATG2A_HUMAN	autophagy related 2A	1579							protein binding			ovary(1)|central_nervous_system(1)	2						AGCGAGACGCGGAGACAGCAC	0.632											OREG0004029	type=REGULATORY REGION|Gene=BC033850|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	14	11					0	0	1	0	0
SYVN1	84447	broad.mit.edu	37	11	64895939	64895939	+	Missense_Mutation	SNP	T	C	C			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr11:64895939T>C	uc001odb.2	-	16	1863	c.1769A>G	c.(1768-1770)GAG>GGG	p.E590G	SYVN1_uc001odc.2_Missense_Mutation_p.E589G|SYVN1_uc009yqc.2_Missense_Mutation_p.E538G	NM_172230	NP_757385	Q86TM6	SYVN1_HUMAN	synoviolin 1 isoform b	590	Cytoplasmic (Potential).				ER-associated protein catabolic process|response to stress	endoplasmic reticulum membrane|integral to membrane|nucleus	acid-amino acid ligase activity|protein binding|zinc ion binding			ovary(1)	1						AGGCATCTCCTCTGTGCCCAC	0.632													35	30					0	0	1	0	0
SF3B2	10992	broad.mit.edu	37	11	65826342	65826342	+	Silent	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr11:65826342C>T	uc001ogy.1	+	10	1048	c.1008C>T	c.(1006-1008)CCC>CCT	p.P336P		NM_006842	NP_006833	Q13435	SF3B2_HUMAN	splicing factor 3B subunit 2	336					interspecies interaction between organisms	catalytic step 2 spliceosome|nucleoplasm|U12-type spliceosomal complex	nucleic acid binding|protein binding			ovary(2)|breast(1)	3						AGAAAAAGCCCCAGCGGGTGC	0.572													14	21					0	0	1	0	0
MYEOV	26579	broad.mit.edu	37	11	69063249	69063249	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr11:69063249G>A	uc001oov.2	+	3	782	c.332G>A	c.(331-333)GGA>GAA	p.G111E	MYEOV_uc001oox.2_Intron|MYEOV_uc009ysl.2_Missense_Mutation_p.G111E|MYEOV_uc001oow.2_Missense_Mutation_p.G53E	NM_138768	NP_620123	Q96EZ4	MYEOV_HUMAN	myeloma overexpressed	111											0	all_lung(4;2.21e-19)|Lung NSC(4;6.13e-19)|Melanoma(5;0.00128)		LUSC - Lung squamous cell carcinoma(11;3.33e-11)|STAD - Stomach adenocarcinoma(18;0.00654)|LUAD - Lung adenocarcinoma(13;0.0713)	Kidney(183;2.99e-09)|KIRC - Kidney renal clear cell carcinoma(183;3.23e-08)|Lung(977;0.00361)|LUSC - Lung squamous cell carcinoma(976;0.0153)		AGAAACAAGGGAGACAAGGGT	0.632													40	42					0	0	1	0	0
ANO1	55107	broad.mit.edu	37	11	69970484	69970484	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr11:69970484G>A	uc001opj.2	+	9	1231	c.926G>A	c.(925-927)GGA>GAA	p.G309E	ANO1_uc001opk.1_Missense_Mutation_p.G281E|ANO1_uc001opl.1_RNA|ANO1_uc010rqk.1_Missense_Mutation_p.G44E	NM_018043	NP_060513	Q5XXA6	ANO1_HUMAN	anoctamin 1, calcium activated chloride channel	309	Cytoplasmic (Potential).				multicellular organismal development	chloride channel complex|cytoplasm|plasma membrane	intracellular calcium activated chloride channel activity			ovary(1)|pancreas(1)	2						GCACGCTATGGAGTTTTCTAT	0.582													25	37					0	0	1	0	0
KCNE3	10008	broad.mit.edu	37	11	74168587	74168587	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr11:74168587C>T	uc001ovc.2	-	3	369	c.22G>A	c.(22-24)GAG>AAG	p.E8K	KCNE3_uc001ovd.2_Missense_Mutation_p.E8K	NM_005472	NP_005463	Q9Y6H6	KCNE3_HUMAN	potassium voltage-gated channel, Isk-related	8						integral to membrane	voltage-gated potassium channel activity			ovary(1)	1	Breast(11;2.86e-06)					TACCAGGTCTCCGTTCCATTG	0.557													31	55					0	0	1	0	0
LRRC32	2615	broad.mit.edu	37	11	76370810	76370810	+	Silent	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr11:76370810G>A	uc001oxq.3	-	3	2070	c.1827C>T	c.(1825-1827)TCC>TCT	p.S609S	LRRC32_uc001oxr.3_Silent_p.S609S|LRRC32_uc010rsf.1_Silent_p.S595S	NM_005512	NP_005503	Q14392	LRC32_HUMAN	leucine rich repeat containing 32 precursor	609	Extracellular (Potential).|LRRCT.					integral to plasma membrane					0						CGTGGCTCAGGGACACCTCCT	0.617													39	44					0	0	1	0	0
FZD4	8322	broad.mit.edu	37	11	86663408	86663408	+	Silent	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr11:86663408G>A	uc001pce.2	-	2	696	c.390C>T	c.(388-390)CCC>CCT	p.P130P	PRSS23_uc001pcc.1_RNA	NM_012193	NP_036325	Q9ULV1	FZD4_HUMAN	frizzled 4 precursor	130	FZ.|Extracellular (Potential).				canonical Wnt receptor signaling pathway|cellular response to retinoic acid|embryo development|negative regulation of cell-substrate adhesion|neuron differentiation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription, DNA-dependent|progesterone secretion|regulation of vascular endothelial growth factor receptor signaling pathway|substrate adhesion-dependent cell spreading|vasculogenesis|Wnt receptor signaling pathway, calcium modulating pathway	cell projection|cell surface|cytoplasm	cytokine binding|G-protein coupled receptor activity|PDZ domain binding|protein heterodimerization activity|protein homodimerization activity|Wnt receptor activity|Wnt-protein binding			large_intestine(1)	1		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00824)				CCTTCAGGACGGGTTCACAGC	0.517													63	61					0	0	1	0	0
GPR83	10888	broad.mit.edu	37	11	94113428	94113428	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr11:94113428C>T	uc001pet.2	-	4	1331	c.1159G>A	c.(1159-1161)GAG>AAG	p.E387K		NM_016540	NP_057624	Q9NYM4	GPR83_HUMAN	G protein-coupled receptor 83 precursor	387	Cytoplasmic (Potential).					integral to membrane|plasma membrane	neuropeptide Y receptor activity			central_nervous_system(2)|ovary(1)	3		Acute lymphoblastic leukemia(157;2.26e-05)|all_hematologic(158;0.0123)				TCATTCTTCTCTGTCCAGGCC	0.557													22	27					0	0	1	0	0
CNTN5	53942	broad.mit.edu	37	11	100141834	100141834	+	Silent	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr11:100141834C>T	uc001pga.2	+	18	2514	c.2175C>T	c.(2173-2175)ATC>ATT	p.I725I	CNTN5_uc001pfz.2_Silent_p.I725I|CNTN5_uc001pgb.2_Silent_p.I651I|CNTN5_uc010ruk.1_5'UTR	NM_014361	NP_055176	O94779	CNTN5_HUMAN	contactin 5 isoform long	725	Fibronectin type-III 1.				cell adhesion	anchored to membrane|plasma membrane	protein binding			skin(3)|ovary(2)|pancreas(2)|breast(1)	8		all_hematologic(158;1.22e-05)|Acute lymphoblastic leukemia(157;3.81e-05)|Melanoma(852;0.219)		BRCA - Breast invasive adenocarcinoma(274;0.00146)|KIRC - Kidney renal clear cell carcinoma(183;0.156)|Kidney(183;0.196)		TCCCAGAAATCATAACAGGGG	0.423													18	35					0	0	1	0	0
MMP1	4312	broad.mit.edu	37	11	102663438	102663438	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr11:102663438C>T	uc001phi.2	-	7	1074	c.931G>A	c.(931-933)GAA>AAA	p.E311K	uc001phh.1_Intron|MMP1_uc010ruv.1_Missense_Mutation_p.E245K	NM_002421	NP_002412	P03956	MMP1_HUMAN	matrix metalloproteinase 1 isoform 1	311	Hemopexin-like 1.				blood coagulation|collagen catabolic process|interspecies interaction between organisms|leukocyte migration|proteolysis	proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding			skin(2)|ovary(1)|lung(1)	4	all_epithelial(12;0.0127)	all_neural(303;0.000318)|all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)	Epithelial(9;0.072)|Lung(13;0.0828)|LUSC - Lung squamous cell carcinoma(19;0.151)|all cancers(10;0.233)	OV - Ovarian serous cystadenocarcinoma(223;1.82e-07)|Epithelial(105;1.51e-06)|BRCA - Breast invasive adenocarcinoma(274;0.014)		AGCTCAACTTCCGGGTAGAAG	0.418													42	52					0	0	1	0	0
EXPH5	23086	broad.mit.edu	37	11	108382802	108382803	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr11:108382802_108382803GG>AA	uc001pkk.2	-	6	3542_3543	c.3431_3432CC>TT	c.(3430-3432)ACC>ATT	p.T1144I	EXPH5_uc010rvy.1_Missense_Mutation_p.T956I|EXPH5_uc010rvz.1_Missense_Mutation_p.T988I|EXPH5_uc010rwa.1_Missense_Mutation_p.T1068I	NM_015065	NP_055880	Q8NEV8	EXPH5_HUMAN	exophilin 5 isoform a	1144					intracellular protein transport		Rab GTPase binding			skin(3)|ovary(2)	5		all_cancers(61;3.99e-08)|Acute lymphoblastic leukemia(157;3.97e-05)|Melanoma(852;4.04e-05)|all_epithelial(67;0.000116)|all_hematologic(158;0.000315)|Breast(348;0.104)|all_neural(303;0.16)		Epithelial(105;8.1e-06)|BRCA - Breast invasive adenocarcinoma(274;1.22e-05)|all cancers(92;0.000129)|OV - Ovarian serous cystadenocarcinoma(223;0.11)|Colorectal(284;0.184)		CCATGCCTGAGGTCAATGGCTT	0.465													14	26					0	0	1	0	0
USP28	57646	broad.mit.edu	37	11	113673914	113673914	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr11:113673914G>A	uc001poh.2	-	23	2861	c.2828C>T	c.(2827-2829)TCC>TTC	p.S943F	USP28_uc001pog.2_Missense_Mutation_p.S619F|USP28_uc010rwy.1_Missense_Mutation_p.S786F|USP28_uc001poi.2_Missense_Mutation_p.S266F	NM_020886	NP_065937	Q96RU2	UBP28_HUMAN	ubiquitin specific protease 28	943					cell proliferation|DNA damage checkpoint|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA repair|protein deubiquitination|response to ionizing radiation|ubiquitin-dependent protein catabolic process	nucleolus|nucleoplasm	protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			lung(2)|breast(2)|ovary(1)|large_intestine(1)|kidney(1)	7		all_cancers(61;3.74e-18)|all_epithelial(67;3.75e-11)|Melanoma(852;1.46e-05)|all_hematologic(158;4.65e-05)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0101)|Prostate(24;0.0153)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)		BRCA - Breast invasive adenocarcinoma(274;3.93e-06)|Epithelial(105;0.000122)|all cancers(92;0.00104)		AGCAATCACGGATTCTTTGAC	0.463													52	68					0	0	1	0	0
VPS11	55823	broad.mit.edu	37	11	118944615	118944615	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr11:118944615C>T	uc010ryx.1	+	8	1234	c.1192C>T	c.(1192-1194)CTC>TTC	p.L398F	VPS11_uc010ryy.1_Missense_Mutation_p.L244F	NM_021729	NP_068375	Q9H270	VPS11_HUMAN	vacuolar protein sorting 11	398					protein transport	endocytic vesicle|HOPS complex|late endosome membrane|lysosomal membrane	nucleotide binding|protein binding|zinc ion binding			ovary(2)|central_nervous_system(1)	3	all_hematologic(175;0.0839)	Medulloblastoma(222;0.0425)|Breast(348;0.052)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.88e-05)		TGGAGACCATCTCTACAGCAA	0.507													22	30					0	0	1	0	0
OAF	220323	broad.mit.edu	37	11	120099802	120099802	+	Missense_Mutation	SNP	T	G	G			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr11:120099802T>G	uc001pxb.2	+	4	1014	c.773T>G	c.(772-774)GTG>GGG	p.V258G		NM_178507	NP_848602	Q86UD1	OAF_HUMAN	OAF homolog precursor	258											0		Breast(109;0.00663)|Medulloblastoma(222;0.0523)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;5.1e-06)		GACTTCTACGTGCCCCAGAGG	0.632													31	44					0	0	1	0	0
TMEM225	338661	broad.mit.edu	37	11	123755267	123755267	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr11:123755267C>T	uc001pzi.2	-	2	466	c.258G>A	c.(256-258)ATG>ATA	p.M86I		NM_001013743	NP_001013765	Q6GV28	TM225_HUMAN	transmembrane protein 225	86	Helical; (Potential).					integral to membrane				upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	3						AGGTGAATTTCATACCCAGGA	0.413													22	39					0	0	1	0	0
OR8B2	26595	broad.mit.edu	37	11	124253193	124253193	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr11:124253193C>T	uc010sai.1	-	1	47	c.47G>A	c.(46-48)GGA>GAA	p.G16E	OR8B2_uc001qab.3_RNA	NM_001005468	NP_001005468	Q96RD0	OR8B2_HUMAN	olfactory receptor, family 8, subfamily B,	16	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0277)		ATCTGTTAATCCAGCAAGAAT	0.393													4	99					0	0	1	0	0
PATE1	160065	broad.mit.edu	37	11	125618496	125618496	+	Silent	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr11:125618496G>A	uc001qct.2	+	5	261	c.249G>A	c.(247-249)AGG>AGA	p.R83R	PATE1_uc009zbr.2_Silent_p.R71R	NM_138294	NP_612151	Q8WXA2	PATE1_HUMAN	expressed in prostate and testis precursor	83						extracellular region					0						CCTCCACAGGGGATGGTAATC	0.448													21	28					0	0	1	0	0
KCNJ5	3762	broad.mit.edu	37	11	128781800	128781800	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr11:128781800G>A	uc001qet.2	+	2	946	c.632G>A	c.(631-633)CGG>CAG	p.R211Q	KCNJ5_uc009zck.2_Missense_Mutation_p.R211Q|KCNJ5_uc001qew.2_Missense_Mutation_p.R211Q	NM_000890	NP_000881	P48544	IRK5_HUMAN	potassium inwardly-rectifying channel J5	211	Cytoplasmic (By similarity).				synaptic transmission	voltage-gated potassium channel complex	G-protein activated inward rectifier potassium channel activity|protein binding			skin(1)	1	all_hematologic(175;0.0641)	Lung NSC(97;0.00038)|all_lung(97;0.000817)|Breast(109;0.00123)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.0059)|LUSC - Lung squamous cell carcinoma(976;0.021)|Lung(977;0.0215)	Glibenclamide(DB01016)	ATCTCCATGCGGGACGAGAAG	0.587													31	38					0	0	1	0	0
CACNA1C	775	broad.mit.edu	37	12	2778187	2778187	+	Missense_Mutation	SNP	G	C	C			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr12:2778187G>C	uc009zdu.1	+	40	5169	c.4856G>C	c.(4855-4857)AGG>ACG	p.R1619T	CACNA1C_uc009zdv.1_Missense_Mutation_p.R1568T|CACNA1C_uc001qkb.2_Missense_Mutation_p.R1571T|CACNA1C_uc001qkc.2_Missense_Mutation_p.R1571T|CACNA1C_uc001qke.2_Missense_Mutation_p.R1560T|CACNA1C_uc001qkf.2_Missense_Mutation_p.R1560T|CACNA1C_uc001qjz.2_Missense_Mutation_p.R1571T|CACNA1C_uc001qkd.2_Missense_Mutation_p.R1571T|CACNA1C_uc001qkg.2_Missense_Mutation_p.R1558T|CACNA1C_uc009zdw.1_Missense_Mutation_p.R1593T|CACNA1C_uc001qkh.2_Missense_Mutation_p.R1560T|CACNA1C_uc001qkl.2_Missense_Mutation_p.R1619T|CACNA1C_uc001qkn.2_Missense_Mutation_p.R1571T|CACNA1C_uc001qko.2_Missense_Mutation_p.R1591T|CACNA1C_uc001qkp.2_Missense_Mutation_p.R1571T|CACNA1C_uc001qkr.2_Missense_Mutation_p.R1588T|CACNA1C_uc001qku.2_Missense_Mutation_p.R1571T|CACNA1C_uc001qkq.2_Missense_Mutation_p.R1599T|CACNA1C_uc001qks.2_Missense_Mutation_p.R1571T|CACNA1C_uc001qkt.2_Missense_Mutation_p.R1571T|CACNA1C_uc001qki.1_Missense_Mutation_p.R1307T|CACNA1C_uc001qkj.1_Missense_Mutation_p.R1307T|CACNA1C_uc001qkk.1_Missense_Mutation_p.R1307T|CACNA1C_uc001qkm.1_Missense_Mutation_p.R1296T|CACNA1C_uc010sea.1_Missense_Mutation_p.R262T	NM_199460	NP_955630	Q13936	CAC1C_HUMAN	calcium channel, voltage-dependent, L type,	1619	Cytoplasmic (Potential).				axon guidance|calcium ion transport into cytosol|energy reserve metabolic process|regulation of insulin secretion	cytoplasm|postsynaptic density|voltage-gated calcium channel complex	calmodulin binding|voltage-gated calcium channel activity			ovary(10)|central_nervous_system(1)	11			OV - Ovarian serous cystadenocarcinoma(31;0.00256)	LUAD - Lung adenocarcinoma(1;0.134)	Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Mibefradil(DB01388)|Nicardipine(DB00622)|Verapamil(DB00661)	ACGGCCCTGAGGATCAAAACA	0.577													53	77					0	0	1	0	0
ANO2	57101	broad.mit.edu	37	12	5744514	5744514	+	Splice_Site	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr12:5744514C>T	uc001qnm.2	-	17	1693	c.1621_splice	c.e17-1	p.I541_splice		NM_020373	NP_065106	Q9NQ90	ANO2_HUMAN	anoctamin 2							chloride channel complex|plasma membrane	intracellular calcium activated chloride channel activity			ovary(4)|large_intestine(2)|central_nervous_system(1)	7						TCAGGGCAATCTGTTTGGGAA	0.453													15	19					0	0	1	0	0
C1S	716	broad.mit.edu	37	12	7177836	7177836	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr12:7177836G>A	uc001qsj.2	+	15	2667	c.1948G>A	c.(1948-1950)GCT>ACT	p.A650T	C1S_uc001qsk.2_Missense_Mutation_p.A650T|C1S_uc001qsl.2_Missense_Mutation_p.A650T|C1S_uc009zfr.2_Missense_Mutation_p.A483T|C1S_uc009zfs.2_RNA	NM_201442	NP_958850	P09871	C1S_HUMAN	complement component 1, s subcomponent	650	Peptidase S1.				complement activation, classical pathway|innate immune response|proteolysis	extracellular region	calcium ion binding|serine-type endopeptidase activity			skin(1)	1					Abciximab(DB00054)|Adalimumab(DB00051)|Basiliximab(DB00074)|Cetuximab(DB00002)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Rituximab(DB00073)|Trastuzumab(DB00072)	ATTCTACGCAGCTGGCCTGGT	0.522													68	108					0	0	1	0	0
FAM90A1	55138	broad.mit.edu	37	12	8377358	8377358	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr12:8377358C>T	uc001qui.2	-	4	630	c.71G>A	c.(70-72)CGG>CAG	p.R24Q	FAM90A1_uc001quh.2_Missense_Mutation_p.R24Q	NM_018088	NP_060558	Q86YD7	F90A1_HUMAN	hypothetical protein LOC55138	24							nucleic acid binding|zinc ion binding			ovary(1)	1				Kidney(36;0.0866)		TGGGGCCCTCCGCTGCTTCTG	0.627													4	9					0	0	1	0	0
PRB2	653247	broad.mit.edu	37	12	11546771	11546771	+	Missense_Mutation	SNP	G	C	C			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr12:11546771G>C	uc010shk.1	-	3	276	c.241C>G	c.(241-243)CCA>GCA	p.P81A		NM_006248	NP_006239			proline-rich protein BstNI subfamily 2												0		all_cancers(2;0.00558)|Acute lymphoblastic leukemia(2;3.94e-11)|all_hematologic(2;3.6e-09)	OV - Ovarian serous cystadenocarcinoma(49;0.185)			TGTGGGGGTGGTCCTTGTGGC	0.612													6	294					0	0	1	0	0
PTPRO	5800	broad.mit.edu	37	12	15637048	15637048	+	Silent	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr12:15637048G>A	uc001rcv.1	+	2	390	c.216G>A	c.(214-216)GAG>GAA	p.E72E	PTPRO_uc001rcw.1_Silent_p.E72E|PTPRO_uc001rcu.1_Silent_p.E72E	NM_030667	NP_109592	Q16827	PTPRO_HUMAN	receptor-type protein tyrosine phosphatase O	72	Fibronectin type-III 1.|Extracellular (Potential).					integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			skin(5)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)	9		Hepatocellular(102;0.244)				TCGAATTTGAGGAATTCAACA	0.383													21	20					0	0	1	0	0
PLCZ1	89869	broad.mit.edu	37	12	18841101	18841101	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr12:18841101C>T	uc010sid.1	-	13	1704	c.1513G>A	c.(1513-1515)GAT>AAT	p.D505N	PLCZ1_uc001rdv.3_Missense_Mutation_p.D401N|PLCZ1_uc001rdw.3_Missense_Mutation_p.D246N|PLCZ1_uc001rdu.1_Missense_Mutation_p.D287N|PLCZ1_uc009zil.1_RNA	NM_033123	NP_149114	Q86YW0	PLCZ1_HUMAN	phospholipase C, zeta 1	505	C2.				intracellular signal transduction|lipid catabolic process|multicellular organismal development	nucleus|perinuclear region of cytoplasm	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			ovary(1)|lung(1)|skin(1)	3	Acute lymphoblastic leukemia(4;0.000455)|all_hematologic(4;0.0241)					ACTAATGAATCACCTTTGTTA	0.318													32	38					0	0	1	0	0
ABCC9	10060	broad.mit.edu	37	12	21954046	21954046	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr12:21954046C>T	uc001rfh.2	-	38	4602	c.4582G>A	c.(4582-4584)GAC>AAC	p.D1528N	ABCC9_uc001rfg.2_Missense_Mutation_p.D57N	NM_020297	NP_064693	O60706	ABCC9_HUMAN	ATP-binding cassette, sub-family C, member 9	1528	Cytoplasmic (Potential).|ABC transporter 2.				defense response to virus|potassium ion import	ATP-sensitive potassium channel complex	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium channel regulator activity|sulfonylurea receptor activity			ovary(4)|skin(2)	6					Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)	TCTGGAGTGTCATATTCTAAA	0.378													32	25					0	0	1	0	0
C12orf40	283461	broad.mit.edu	37	12	40076639	40076639	+	Missense_Mutation	SNP	A	G	G			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr12:40076639A>G	uc001rmc.2	+	8	1080	c.913A>G	c.(913-915)ATC>GTC	p.I305V	C12orf40_uc009zjv.1_RNA	NM_001031748	NP_001026918	Q86WS4	CL040_HUMAN	hypothetical protein LOC283461	305										ovary(6)	6						TCAAAATATGATCAATGTATT	0.313													17	24					0	0	1	0	0
ARID2	196528	broad.mit.edu	37	12	46245684	46245684	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr12:46245684G>T	uc001ros.1	+	15	3778	c.3778G>T	c.(3778-3780)GAA>TAA	p.E1260*	ARID2_uc001ror.2_Nonsense_Mutation_p.E1260*|ARID2_uc009zkg.1_Nonsense_Mutation_p.E716*|ARID2_uc009zkh.1_Nonsense_Mutation_p.E887*|ARID2_uc001rou.1_Nonsense_Mutation_p.E594*	NM_152641	NP_689854	Q68CP9	ARID2_HUMAN	AT rich interactive domain 2 (ARID, RFX-like)	1260					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(6)|skin(3)|upper_aerodigestive_tract(1)	10	Lung SC(27;0.192)|Renal(347;0.236)	Lung NSC(34;0.106)|all_lung(34;0.22)	OV - Ovarian serous cystadenocarcinoma(5;0.00691)	GBM - Glioblastoma multiforme(48;0.0153)		ACATGTTCATGAACGTAAAAT	0.433													30	29					1.30998e-17	1.32375e-17	1	1	0
PRPF40B	25766	broad.mit.edu	37	12	50025193	50025194	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr12:50025193_50025194CC>TT	uc001rur.1	+	2	92_93	c.28_29CC>TT	c.(28-30)CCA>TTA	p.P10L	PRPF40B_uc001rup.1_Missense_Mutation_p.P32L|PRPF40B_uc001ruq.1_Missense_Mutation_p.P4L|PRPF40B_uc001rus.1_5'Flank	NM_001031698	NP_001026868	Q6NWY9	PR40B_HUMAN	Huntingtin interacting protein C isoform 1	10	Pro-rich.				mRNA processing|RNA splicing	nuclear speck				skin(2)|ovary(1)|pancreas(1)|kidney(1)	5						GATGCCCCCTCCAGGGATCCCC	0.579													93	113					0	0	1	0	0
LARP4	113251	broad.mit.edu	37	12	50848181	50848181	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr12:50848181C>T	uc001rwp.1	+	10	1246	c.1102C>T	c.(1102-1104)CGA>TGA	p.R368*	LARP4_uc001rwo.1_Nonsense_Mutation_p.R374*|LARP4_uc001rwq.1_Nonsense_Mutation_p.R297*|LARP4_uc001rwr.1_Nonsense_Mutation_p.R368*|LARP4_uc001rws.1_Nonsense_Mutation_p.R367*|LARP4_uc009zlr.1_Nonsense_Mutation_p.R187*|LARP4_uc001rwt.1_Nonsense_Mutation_p.R30*|LARP4_uc001rwm.2_Nonsense_Mutation_p.R368*|LARP4_uc001rwn.2_Nonsense_Mutation_p.R298*	NM_052879	NP_443111	Q71RC2	LARP4_HUMAN	c-Mpl binding protein isoform a	368							nucleotide binding|RNA binding			ovary(1)	1						GAATATGGGTCGACCATTCCA	0.338													15	21					0	0	1	0	0
ANKRD33	341405	broad.mit.edu	37	12	52284646	52284646	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr12:52284646G>A	uc001rzf.3	+	5	1120	c.541G>A	c.(541-543)GAC>AAC	p.D181N	ANKRD33_uc001rzh.3_3'UTR|ANKRD33_uc001rzd.2_Missense_Mutation_p.D306N|ANKRD33_uc001rze.2_Missense_Mutation_p.D202N|ANKRD33_uc001rzg.3_Missense_Mutation_p.D108N|ANKRD33_uc001rzi.3_Missense_Mutation_p.D181N	NM_001130015	NP_001123487	Q7Z3H0	ANR33_HUMAN	ankyrin repeat domain 33 isoform 1	181											0				BRCA - Breast invasive adenocarcinoma(357;0.0969)		GGGTGTTCTGGACCACCTTGT	0.567													13	18					0	0	1	0	0
KRT8	3856	broad.mit.edu	37	12	53292267	53292267	+	Silent	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr12:53292267C>T	uc001sbd.2	-	7	1342	c.1239G>A	c.(1237-1239)ACG>ACA	p.T413T	KRT8_uc009zmj.2_Intron|KRT8_uc009zmk.1_Silent_p.T441T|KRT8_uc009zml.1_Silent_p.T413T|KRT8_uc009zmm.1_Silent_p.T413T	NM_002273	NP_002264	P05787	K2C8_HUMAN	keratin 8	413	Tail.				cytoskeleton organization|interspecies interaction between organisms	cytoplasm|keratin filament|nuclear matrix|nucleoplasm	protein binding|structural molecule activity			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(357;0.108)	Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	TGGTGGTCTTCGTATGAATAC	0.617													9	10					0	0	1	0	0
KRT18	3875	broad.mit.edu	37	12	53345319	53345319	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr12:53345319G>A	uc001sbe.2	+	5	781	c.712G>A	c.(712-714)GAT>AAT	p.D238N	KRT18_uc009zmn.1_Missense_Mutation_p.D238N|KRT18_uc001sbf.1_Missense_Mutation_p.D65N|KRT18_uc001sbg.2_Missense_Mutation_p.D238N|KRT18_uc009zmo.2_Missense_Mutation_p.D238N|KRT8_uc009zml.1_5'Flank|KRT8_uc009zmm.1_5'Flank	NM_199187	NP_954657	P05783	K1C18_HUMAN	keratin 18	238	Linker 12.|Rod.|Necessary for interaction with PNN.	Cleavage; by caspase-3, caspase-6 or caspase-7.		D->E: Prevents cleavage by caspase-6 during apoptosis. Induces aggregates of keratin filaments in an altered organization.	anatomical structure morphogenesis|cell cycle|Golgi to plasma membrane CFTR protein transport|interspecies interaction between organisms|negative regulation of apoptosis	centriolar satellite|keratin filament|perinuclear region of cytoplasm	protein binding|structural molecule activity			skin(1)	1						CGTGGAGGTAGATGCCCCCAA	0.552													33	23					0	0	1	0	0
NCKAP1L	3071	broad.mit.edu	37	12	54910051	54910051	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr12:54910051G>A	uc001sgc.3	+	10	1049	c.970G>A	c.(970-972)GAG>AAG	p.E324K	NCKAP1L_uc010sox.1_5'UTR|NCKAP1L_uc010soy.1_Missense_Mutation_p.E274K	NM_005337	NP_005328	P55160	NCKPL_HUMAN	NCK-associated protein 1-like	324					actin polymerization-dependent cell motility|B cell homeostasis|B cell receptor signaling pathway|cortical actin cytoskeleton organization|erythrocyte development|maintenance of cell polarity|myeloid cell homeostasis|negative regulation of apoptosis|negative regulation of interleukin-17 production|negative regulation of interleukin-6 production|negative regulation of myosin-light-chain-phosphatase activity|neutrophil chemotaxis|positive regulation of actin filament polymerization|positive regulation of B cell differentiation|positive regulation of B cell proliferation|positive regulation of CD4-positive, alpha-beta T cell differentiation|positive regulation of CD8-positive, alpha-beta T cell differentiation|positive regulation of cell adhesion mediated by integrin|positive regulation of erythrocyte differentiation|positive regulation of gamma-delta T cell differentiation|positive regulation of neutrophil chemotaxis|positive regulation of phagocytosis, engulfment|positive regulation of T cell proliferation|protein complex assembly|response to drug|T cell homeostasis	cytosol|integral to plasma membrane|membrane fraction|SCAR complex	protein complex binding|protein kinase activator activity|Rac GTPase activator activity			ovary(3)|central_nervous_system(1)	4						AGACATAAAGGAGAGCAAGGA	0.483													21	69					0	0	1	0	0
OR10A7	121364	broad.mit.edu	37	12	55615707	55615707	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr12:55615707C>T	uc010spf.1	+	1	899	c.899C>T	c.(898-900)GCT>GTT	p.A300V		NM_001005280	NP_001005280	Q8NGE5	O10A7_HUMAN	olfactory receptor, family 10, subfamily A,	300	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(4)	4						GTGAAAGGGGCTGTCAAGAGG	0.438													21	42					0	0	1	0	0
OR6C2	341416	broad.mit.edu	37	12	55846490	55846490	+	Missense_Mutation	SNP	G	A	A	rs140332483		TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr12:55846490G>A	uc001sgz.1	+	1	493	c.493G>A	c.(493-495)GAA>AAA	p.E165K		NM_054105	NP_473446	Q9NZP2	OR6C2_HUMAN	olfactory receptor, family 6, subfamily C,	165	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity	p.E165K(1)		skin(2)	2						CCTCCAGCTCGAATTCTGTGA	0.448													59	84					0	0	1	0	0
GLI1	2735	broad.mit.edu	37	12	57857824	57857824	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr12:57857824C>T	uc001snx.2	+	3	221	c.143C>T	c.(142-144)TCC>TTC	p.S48F	GLI1_uc009zpp.2_RNA|GLI1_uc009zpq.2_Intron|GLI1_uc009zpr.1_Intron	NM_005269	NP_005260	P08151	GLI1_HUMAN	GLI family zinc finger 1 isoform 1	48					epidermal cell differentiation|negative regulation of canonical Wnt receptor signaling pathway|osteoblast differentiation|positive regulation of DNA replication|positive regulation of smoothened signaling pathway|positive regulation of transcription from RNA polymerase II promoter	cytosol|nucleus	transcription regulatory region DNA binding|zinc ion binding			skin(4)|ovary(4)|breast(3)|central_nervous_system(1)|urinary_tract(1)|kidney(1)|pancreas(1)	15			GBM - Glioblastoma multiforme(3;3.99e-32)			AACCTCATGTCCGGCCCCCAC	0.547													85	145					0	0	1	0	0
MARS	4141	broad.mit.edu	37	12	57883717	57883717	+	Silent	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr12:57883717C>T	uc001sog.2	+	5	476	c.453C>T	c.(451-453)GCC>GCT	p.A151A	ARHGAP9_uc001sod.2_5'Flank|ARHGAP9_uc001soe.1_5'Flank|MARS_uc001sof.1_RNA|MARS_uc010srp.1_Intron|MARS_uc010srq.1_Intron	NM_004990	NP_004981	P56192	SYMC_HUMAN	methionyl-tRNA synthetase	151	GST C-terminal.				methionyl-tRNA aminoacylation	cytosol	ATP binding|methionine-tRNA ligase activity|protein binding|tRNA binding			ovary(3)|central_nervous_system(1)|pancreas(1)	5			GBM - Glioblastoma multiforme(3;4.27e-41)		L-Methionine(DB00134)	TGTGGGGAGCCCTATACCCAT	0.478													71	98					0	0	1	0	0
WIF1	11197	broad.mit.edu	37	12	65448919	65448919	+	Missense_Mutation	SNP	G	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr12:65448919G>T	uc001ssk.2	-	9	1142	c.997C>A	c.(997-999)CAT>AAT	p.H333N		NM_007191	NP_009122	Q9Y5W5	WIF1_HUMAN	WNT inhibitory factor 1 precursor	333	EGF-like 5.				multicellular organismal development|Wnt receptor signaling pathway	extracellular region	protein tyrosine kinase activity			ovary(2)|lung(1)|skin(1)	4			LUAD - Lung adenocarcinoma(6;0.0234)|LUSC - Lung squamous cell carcinoma(43;0.0975)	GBM - Glioblastoma multiforme(28;0.0231)		TGTCTTCCATGCCAACCTTCT	0.413			T	HMGA2	pleomorphic salivary gland adenoma								35	45					1.57019e-19	1.58908e-19	1	1	0
PTPRB	5787	broad.mit.edu	37	12	70989934	70989934	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr12:70989934C>T	uc001swb.3	-	3	529	c.499G>A	c.(499-501)GAA>AAA	p.E167K	PTPRB_uc010sto.1_Missense_Mutation_p.E167K|PTPRB_uc010stp.1_Missense_Mutation_p.E167K|PTPRB_uc001swc.3_Missense_Mutation_p.E385K|PTPRB_uc001swa.3_Missense_Mutation_p.E385K|PTPRB_uc001swd.3_Missense_Mutation_p.E384K|PTPRB_uc009zrr.1_Missense_Mutation_p.E264K|PTPRB_uc001swe.2_Missense_Mutation_p.E385K	NM_002837	NP_002828	P23467	PTPRB_HUMAN	protein tyrosine phosphatase, receptor type, B	167	Fibronectin type-III 2.|Extracellular (Potential).				angiogenesis	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(2)|skin(1)	3	Renal(347;0.236)		GBM - Glioblastoma multiforme(2;2.17e-05)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00306)|STAD - Stomach adenocarcinoma(21;0.149)			AAAGTGTATTCATTCCATGAA	0.358													12	21					0	0	1	0	0
ZFC3H1	196441	broad.mit.edu	37	12	72017251	72017251	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr12:72017251G>A	uc001swo.2	-	24	4992	c.4633C>T	c.(4633-4635)CCA>TCA	p.P1545S		NM_144982	NP_659419	O60293	ZC3H1_HUMAN	proline/serine-rich coiled-coil 2	1545					RNA processing	intracellular	metal ion binding			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5						TCATTAGATGGATCATAAAAT	0.348													38	51					0	0	1	0	0
FGD6	55785	broad.mit.edu	37	12	95605014	95605014	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr12:95605014G>A	uc001tdp.3	-	2	270	c.46C>T	c.(46-48)CCC>TCC	p.P16S	FGD6_uc009zsx.2_Intron	NM_018351	NP_060821	Q6ZV73	FGD6_HUMAN	FYVE, RhoGEF and PH domain containing 6	16					actin cytoskeleton organization|filopodium assembly|regulation of Cdc42 GTPase activity|regulation of cell shape	cytoskeleton|Golgi apparatus|lamellipodium|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(2)|breast(1)	3						ACAAACTTGGGCTTGGGGGCC	0.388													33	30					0	0	1	0	0
SLC17A8	246213	broad.mit.edu	37	12	100811847	100811847	+	Silent	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr12:100811847C>T	uc010svi.1	+	11	1651	c.1338C>T	c.(1336-1338)GCC>GCT	p.A446A	SLC17A8_uc009ztx.2_Silent_p.A396A	NM_139319	NP_647480	Q8NDX2	VGLU3_HUMAN	solute carrier family 17 (sodium-dependent	446	Cytoplasmic (Potential).				neurotransmitter transport|sensory perception of sound|sodium ion transport	cell junction|integral to membrane|synaptic vesicle membrane|synaptosome	L-glutamate transmembrane transporter activity|symporter activity			ovary(3)	3						CACGCTATGCCAGCATTCTCA	0.478													52	80					0	0	1	0	0
SLC41A2	84102	broad.mit.edu	37	12	105282871	105282871	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr12:105282871G>A	uc001tla.2	-	4	987	c.820C>T	c.(820-822)CAT>TAT	p.H274Y		NM_032148	NP_115524	Q96JW4	S41A2_HUMAN	solute carrier family 41, member 2	274	Cytoplasmic.					integral to membrane|plasma membrane	magnesium ion transmembrane transporter activity			ovary(1)|skin(1)	2						AGTATGGAATGATCAAGGTAA	0.393													37	38					0	0	1	0	0
ALDH1L2	160428	broad.mit.edu	37	12	105464438	105464438	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr12:105464438G>A	uc001tlc.2	-	3	465	c.338C>T	c.(337-339)CCC>CTC	p.P113L	ALDH1L2_uc009zup.2_RNA	NM_001034173	NP_001029345	Q3SY69	AL1L2_HUMAN	aldehyde dehydrogenase 1 family, member L2	113	GART.				10-formyltetrahydrofolate catabolic process|biosynthetic process	mitochondrion	acyl carrier activity|cofactor binding|formyltetrahydrofolate dehydrogenase activity|hydroxymethyl-, formyl- and related transferase activity|methyltransferase activity|phosphopantetheine binding			skin(1)	1						TATATCCATGGGAATGAACTG	0.478													20	37					0	0	1	0	0
OAS2	4939	broad.mit.edu	37	12	113424971	113424971	+	Silent	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr12:113424971G>A	uc001tuj.2	+	2	446	c.306G>A	c.(304-306)GGG>GGA	p.G102G	OAS2_uc001tuh.2_Silent_p.G102G|OAS2_uc001tui.1_Silent_p.G102G	NM_016817	NP_058197	P29728	OAS2_HUMAN	2'-5'-oligoadenylate synthetase 2 isoform 1	102	OAS domain 1.				interferon-gamma-mediated signaling pathway|nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|type I interferon-mediated signaling pathway	endoplasmic reticulum|membrane|microsome|mitochondrion|nucleus	ATP binding|nucleotidyltransferase activity|RNA binding			ovary(1)	1						ATAAAACTGGGGATAAGCTGA	0.438													31	41					0	0	1	0	0
CAMKK2	10645	broad.mit.edu	37	12	121712177	121712177	+	Silent	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr12:121712177G>A	uc001tzu.2	-	2	277	c.153C>T	c.(151-153)TCC>TCT	p.S51S	CAMKK2_uc001tzt.2_Silent_p.S51S|CAMKK2_uc001tzv.2_Silent_p.S51S|CAMKK2_uc001tzw.2_Silent_p.S51S|CAMKK2_uc001tzx.2_Silent_p.S51S|CAMKK2_uc001tzy.2_Silent_p.S51S|CAMKK2_uc001uaa.1_Silent_p.S51S|CAMKK2_uc001uab.2_Silent_p.S51S|CAMKK2_uc001uac.2_Silent_p.S51S|CAMKK2_uc001uad.1_Silent_p.S51S	NM_006549	NP_006540	Q96RR4	KKCC2_HUMAN	calcium/calmodulin-dependent protein kinase	51					calcium-mediated signaling|MAPKKK cascade|positive regulation of transcription, DNA-dependent|protein autophosphorylation|regulation of protein kinase activity	cytoplasm	ATP binding|calcium ion binding|calmodulin binding|calmodulin-dependent protein kinase activity|protein tyrosine kinase activity			lung(1)|large_intestine(1)|stomach(1)	3	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)					CCACAATGAAGGACTCCATGC	0.667													24	19					0	0	1	0	0
DNAH10	196385	broad.mit.edu	37	12	124345710	124345710	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr12:124345710G>A	uc001uft.3	+	38	6572	c.6547G>A	c.(6547-6549)GAG>AAG	p.E2183K		NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	2183	AAA 2 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		AGACAAGAAGGAGCGAAAGTG	0.448													10	17					0	0	1	0	0
ULK1	8408	broad.mit.edu	37	12	132400521	132400521	+	Silent	SNP	C	T	T	rs144046347	byFrequency	TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr12:132400521C>T	uc001uje.2	+	19	1963	c.1695C>T	c.(1693-1695)GTC>GTT	p.V565V		NM_003565	NP_003556	O75385	ULK1_HUMAN	Unc-51-like kinase 1	565					autophagy|protein localization|regulation of autophagy	autophagic vacuole|cytosol|pre-autophagosomal structure|ULK1-ATG13-FIP200 complex	ATP binding|protein complex binding|protein serine/threonine kinase activity			ovary(1)|lung(1)|central_nervous_system(1)|skin(1)	4	all_neural(191;0.0982)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;2.07e-08)|Epithelial(86;2.56e-07)|all cancers(50;3.01e-07)		ACTTGCACGTCGTCCGCCCCA	0.697													48	48					0	0	1	0	0
TUBA3C	7278	broad.mit.edu	37	13	19752497	19752497	+	Missense_Mutation	SNP	G	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr13:19752497G>T	uc009zzj.2	-	3	313	c.264C>A	c.(262-264)CAC>CAA	p.H88Q		NM_006001	NP_005992	Q13748	TBA3C_HUMAN	tubulin, alpha 3c	88					'de novo' posttranslational protein folding|microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|protein binding|structural molecule activity			ovary(3)|skin(2)	5		all_cancers(29;1.31e-20)|all_epithelial(30;1.59e-20)|all_lung(29;6.91e-20)|Lung NSC(5;9.25e-17)|Hepatocellular(1;0.0207)|Lung SC(185;0.0262)|Ovarian(182;0.162)		all cancers(112;6.78e-06)|Epithelial(112;3.79e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00172)|Lung(94;0.0186)|LUSC - Lung squamous cell carcinoma(192;0.108)		GCTGCTCTGGGTGGAAGAGCT	0.512													3	80					1	1	1	1	0
CDK8	1024	broad.mit.edu	37	13	26923280	26923281	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr13:26923280_26923281GG>AA	uc001uqr.1	+	3	302_303	c.276_277GG>AA	c.(274-279)AAGGTG>AAAATG	p.V93M	CDK8_uc001uqs.1_Missense_Mutation_p.V93M|CDK8_uc001uqt.1_Translation_Start_Site	NM_001260	NP_001251	P49336	CDK8_HUMAN	cyclin-dependent kinase 8	93	Protein kinase.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	mediator complex	ATP binding|cyclin-dependent protein kinase activity|protein binding|RNA polymerase II carboxy-terminal domain kinase activity			lung(2)|large_intestine(1)|ovary(1)|skin(1)	5	Colorectal(5;0.000442)	Lung SC(185;0.0156)|Breast(139;0.147)		all cancers(112;0.0384)|Epithelial(112;0.142)|OV - Ovarian serous cystadenocarcinoma(117;0.188)		CTGATAGGAAGGTGTGGCTTCT	0.411													64	113					0	0	1	0	0
ENOX1	55068	broad.mit.edu	37	13	43872622	43872622	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr13:43872622G>A	uc001uza.3	-	12	1606	c.1306C>T	c.(1306-1308)CTC>TTC	p.L436F	ENOX1_uc001uzb.3_Missense_Mutation_p.L436F|ENOX1_uc001uzc.3_Missense_Mutation_p.L436F|ENOX1_uc001uyz.3_Missense_Mutation_p.L45F	NM_001127615	NP_001121087	Q8TC92	ENOX1_HUMAN	ecto-NOX disulfide-thiol exchanger 1	436	Potential.				electron transport chain|rhythmic process|transport	extracellular space|plasma membrane	nucleic acid binding|nucleotide binding|oxidoreductase activity			pancreas(1)|skin(1)	2		Lung NSC(96;0.000518)|Prostate(109;0.0233)|Hepatocellular(98;0.0268)|Lung SC(185;0.0367)|Breast(139;0.0406)		GBM - Glioblastoma multiforme(144;0.00333)|BRCA - Breast invasive adenocarcinoma(63;0.172)		TGCCAGCGGAGACTGTCATTC	0.522													38	40					0	0	1	0	0
SETDB2	83852	broad.mit.edu	37	13	50057673	50057673	+	Missense_Mutation	SNP	A	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr13:50057673A>T	uc001vcz.2	+	11	2398	c.1492A>T	c.(1492-1494)ATT>TTT	p.I498F	SETDB2_uc001vcy.3_Missense_Mutation_p.I486F|SETDB2_uc010adh.2_Missense_Mutation_p.I486F|SETDB2_uc001vda.2_Missense_Mutation_p.I486F	NM_031915	NP_114121	Q96T68	SETB2_HUMAN	SET domain, bifurcated 2 isoform a	498	SET.				cell division|chromosome segregation|heart looping|left/right axis specification|mitosis|negative regulation of transcription, DNA-dependent	chromosome|nucleus	DNA binding|histone methyltransferase activity (H3-K9 specific)|zinc ion binding			ovary(1)|central_nervous_system(1)	2		Lung NSC(96;0.000408)|Breast(56;0.00131)|Prostate(109;0.00446)|Hepatocellular(98;0.0556)|Glioma(44;0.236)	KIRC - Kidney renal clear cell carcinoma(9;0.206)	GBM - Glioblastoma multiforme(99;3.1e-09)		CAAGACAGCCATTTTTCAACA	0.244													6	12					0	0	1	0	0
TRIM13	10206	broad.mit.edu	37	13	50587148	50587148	+	Silent	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr13:50587148C>T	uc001vdq.1	+	3	1385	c.1072C>T	c.(1072-1074)CTG>TTG	p.L358L	DLEU2_uc001vdn.1_Intron|DLEU2_uc001vdo.1_Intron|KCNRG_uc001vdt.2_5'Flank|KCNRG_uc001vdu.2_5'Flank|TRIM13_uc001vdp.1_Silent_p.L361L|TRIM13_uc001vdr.1_Silent_p.L358L|TRIM13_uc001vds.1_Silent_p.L358L	NM_052811	NP_434698	O60858	TRI13_HUMAN	ret finger protein 2 isoform 1	358					anatomical structure morphogenesis|ER-associated protein catabolic process|positive regulation of I-kappaB kinase/NF-kappaB cascade|protein autoubiquitination	cytoplasm|endoplasmic reticulum membrane|integral to membrane	protein binding|signal transducer activity|ubiquitin-protein ligase activity|zinc ion binding			ovary(2)	2		Acute lymphoblastic leukemia(7;3.41e-06)|Lung NSC(96;3.08e-05)|Breast(56;9.7e-05)|Prostate(109;0.00174)|Hepatocellular(98;0.0207)|Myeloproliferative disorder(33;0.163)|Lung SC(185;0.187)|all_neural(104;0.19)		GBM - Glioblastoma multiforme(99;1.53e-10)|COAD - Colon adenocarcinoma(199;0.205)		CAGTTCCTATCTGACTAAAAC	0.373													36	41					0	0	1	0	0
FARP1	10160	broad.mit.edu	37	13	99017671	99017671	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr13:99017671C>T	uc001vnj.2	+	4	635	c.299C>T	c.(298-300)CCC>CTC	p.P100L	FARP1_uc001vnh.2_Missense_Mutation_p.P100L	NM_005766	NP_005757	Q9Y4F1	FARP1_HUMAN	FERM, RhoGEF, and pleckstrin domain protein 1	100	FERM.				regulation of Rho protein signal transduction	cytoplasm|cytoskeleton|extrinsic to membrane	cytoskeletal protein binding|Rho guanyl-nucleotide exchange factor activity			breast(2)	2	all_neural(89;0.0982)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)		BRCA - Breast invasive adenocarcinoma(86;0.233)			CTCCTAAAACCCATTGTGAAA	0.368													21	44					0	0	1	0	0
POTEG	404785	broad.mit.edu	37	14	19553525	19553525	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr14:19553525G>A	uc001vuz.1	+	1	161	c.109G>A	c.(109-111)GGG>AGG	p.G37R	POTEG_uc001vva.1_RNA|POTEG_uc010ahc.1_RNA	NM_001005356	NP_001005356	Q6S5H5	POTEG_HUMAN	POTE ankyrin domain family, member G	37										ovary(1)	1						CTGGTGCAGGGGGAGCGGCAA	0.592													32	267					0	0	1	0	0
POTEG	404785	broad.mit.edu	37	14	19559070	19559070	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr14:19559070G>A	uc001vuz.1	+	3	768	c.716G>A	c.(715-717)GGA>GAA	p.G239E	POTEG_uc001vva.1_RNA|POTEG_uc010ahc.1_RNA	NM_001005356	NP_001005356	Q6S5H5	POTEG_HUMAN	POTE ankyrin domain family, member G	239	ANK 3.									ovary(1)	1						GATGAGTATGGAAATACCGCT	0.403													41	108					0	0	1	0	0
SLC7A7	9056	broad.mit.edu	37	14	23282555	23282555	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr14:23282555G>A	uc001wgr.3	-	2	191	c.53C>T	c.(52-54)TCC>TTC	p.S18F	SLC7A7_uc001wgs.3_Missense_Mutation_p.S18F|SLC7A7_uc001wgt.3_Missense_Mutation_p.S18F|SLC7A7_uc001wgu.3_Missense_Mutation_p.S18F|SLC7A7_uc001wgv.3_Missense_Mutation_p.S18F	NM_003982	NP_003973	Q9UM01	YLAT1_HUMAN	solute carrier family 7 member 7	18					blood coagulation|cellular amino acid metabolic process|ion transport|leukocyte migration|protein complex assembly	basolateral plasma membrane|integral to plasma membrane	amino acid transmembrane transporter activity			ovary(1)|breast(1)	2	all_cancers(95;8.44e-05)			GBM - Glioblastoma multiforme(265;0.00741)		ACCCAAAGGGGAGGTTTCCAC	0.567													36	54					0	0	1	0	0
ARHGAP5	394	broad.mit.edu	37	14	32563240	32563240	+	Missense_Mutation	SNP	G	A	A	rs142991621		TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr14:32563240G>A	uc001wrl.2	+	2	3604	c.3365G>A	c.(3364-3366)CGA>CAA	p.R1122Q	ARHGAP5_uc001wrm.2_Missense_Mutation_p.R1122Q|ARHGAP5_uc001wrn.2_Missense_Mutation_p.R1122Q|ARHGAP5_uc001wro.2_Intron|ARHGAP5_uc001wrp.2_Intron	NM_001173	NP_001025226	Q13017	RHG05_HUMAN	Rho GTPase activating protein 5 isoform b	1122					cell adhesion|Rho protein signal transduction	cytosol|membrane	GTP binding|GTPase activity|Rho GTPase activator activity|SH2 domain binding			ovary(4)|central_nervous_system(1)	5	Hepatocellular(127;0.0604)|Prostate(35;0.15)|Breast(36;0.186)		LUAD - Lung adenocarcinoma(48;0.00192)|Lung(238;0.00714)|BRCA - Breast invasive adenocarcinoma(188;0.0952)|STAD - Stomach adenocarcinoma(7;0.173)	GBM - Glioblastoma multiforme(265;0.00566)		ATTAAAATTCGAAACTCATTT	0.353													14	20					0	0	1	0	0
NID2	22795	broad.mit.edu	37	14	52472502	52472502	+	Missense_Mutation	SNP	C	T	T	rs149021065		TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr14:52472502C>T	uc001wzo.2	-	21	4304	c.4070G>A	c.(4069-4071)CGA>CAA	p.R1357Q	NID2_uc010tqs.1_Missense_Mutation_p.R1309Q|NID2_uc010tqt.1_Missense_Mutation_p.R1357Q	NM_007361	NP_031387	Q14112	NID2_HUMAN	nidogen 2 precursor	1357	LDL-receptor class B 5.					basement membrane	calcium ion binding|collagen binding			pancreas(2)|breast(2)|ovary(1)|liver(1)|skin(1)	7	Breast(41;0.0639)|all_epithelial(31;0.123)					GAGGTGAGATCGTTGTTCTGG	0.438													42	56					0	0	1	0	0
GPHN	10243	broad.mit.edu	37	14	67579881	67579881	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr14:67579881G>A	uc001xiy.2	+	15	2641	c.1520G>A	c.(1519-1521)GGG>GAG	p.G507E	GPHN_uc001xix.2_Missense_Mutation_p.G540E|GPHN_uc010tss.1_Missense_Mutation_p.G553E|GPHN_uc010tst.1_Missense_Mutation_p.G476E|GPHN_uc010tsu.1_Missense_Mutation_p.G430E	NM_001024218	NP_001019389	Q9NQX3	GEPH_HUMAN	gephyrin isoform 2	507	MPT adenylyltransferase.				Mo-molybdopterin cofactor biosynthetic process|water-soluble vitamin metabolic process	cell junction|cytoplasm|cytoskeleton|postsynaptic membrane	ATP binding|metal ion binding|nucleotidyltransferase activity			ovary(2)	2		all_cancers(7;0.0476)|all_hematologic(31;0.0116)		Epithelial(1;1.73e-08)|all cancers(60;3.15e-07)|OV - Ovarian serous cystadenocarcinoma(108;0.000275)|BRCA - Breast invasive adenocarcinoma(234;0.00323)|Colorectal(3;0.0938)|KIRC - Kidney renal clear cell carcinoma(182;0.184)		ATGTCAACAGGGAATGAGGTA	0.428			T	MLL	AL								23	57					0	0	1	0	0
GPHN	10243	broad.mit.edu	37	14	67610133	67610133	+	Silent	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr14:67610133C>T	uc001xiy.2	+	17	2825	c.1704C>T	c.(1702-1704)ATC>ATT	p.I568I	GPHN_uc001xix.2_Silent_p.I601I|GPHN_uc010tss.1_Silent_p.I614I|GPHN_uc010tst.1_Silent_p.I537I|GPHN_uc010tsu.1_Silent_p.I491I	NM_001024218	NP_001019389	Q9NQX3	GEPH_HUMAN	gephyrin isoform 2	568	MPT adenylyltransferase.				Mo-molybdopterin cofactor biosynthetic process|water-soluble vitamin metabolic process	cell junction|cytoplasm|cytoskeleton|postsynaptic membrane	ATP binding|metal ion binding|nucleotidyltransferase activity			ovary(2)	2		all_cancers(7;0.0476)|all_hematologic(31;0.0116)		Epithelial(1;1.73e-08)|all cancers(60;3.15e-07)|OV - Ovarian serous cystadenocarcinoma(108;0.000275)|BRCA - Breast invasive adenocarcinoma(234;0.00323)|Colorectal(3;0.0938)|KIRC - Kidney renal clear cell carcinoma(182;0.184)		CTGATGTCATCATCACATCAG	0.403			T	MLL	AL								88	120					0	0	1	0	0
SLC8A3	6547	broad.mit.edu	37	14	70633531	70633531	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr14:70633531C>T	uc001xly.2	-	2	2363	c.1609G>A	c.(1609-1611)GAT>AAT	p.D537N	SLC8A3_uc001xlw.2_Missense_Mutation_p.D537N|SLC8A3_uc001xlx.2_Missense_Mutation_p.D537N|SLC8A3_uc001xlz.2_Missense_Mutation_p.D537N|SLC8A3_uc010ara.2_RNA	NM_183002	NP_892114	P57103	NAC3_HUMAN	solute carrier family 8 (sodium/calcium	537	Calx-beta 2.|Cytoplasmic (Potential).				cell communication|platelet activation	integral to membrane|plasma membrane	calcium:sodium antiporter activity|calmodulin binding			skin(3)|ovary(2)|breast(2)	7				BRCA - Breast invasive adenocarcinoma(234;0.0079)|all cancers(60;0.0102)|OV - Ovarian serous cystadenocarcinoma(108;0.0555)		TGAATAGTATCACATTCAAAA	0.507													21	17					0	0	1	0	0
PCNX	22990	broad.mit.edu	37	14	71524350	71524350	+	Silent	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr14:71524350C>T	uc001xmo.2	+	26	5207	c.4761C>T	c.(4759-4761)ATC>ATT	p.I1587I	PCNX_uc010are.1_Silent_p.I1476I|PCNX_uc010arf.1_Intron	NM_014982	NP_055797	Q96RV3	PCX1_HUMAN	pecanex-like 1	1587						integral to membrane				ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(12;0.206)	all cancers(60;0.00835)|BRCA - Breast invasive adenocarcinoma(234;0.00951)|OV - Ovarian serous cystadenocarcinoma(108;0.0417)		ACTGTTTCATCCTTGCCTCTG	0.453													213	248					0	0	1	0	0
RGS6	9628	broad.mit.edu	37	14	72941376	72941376	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr14:72941376G>A	uc001xna.3	+	10	1185	c.662G>A	c.(661-663)CGA>CAA	p.R221Q	RGS6_uc010ttn.1_Missense_Mutation_p.R221Q|RGS6_uc001xmx.3_Missense_Mutation_p.R221Q|RGS6_uc010tto.1_RNA|RGS6_uc001xmy.3_Missense_Mutation_p.R221Q|RGS6_uc010ttp.1_Missense_Mutation_p.R152Q|RGS6_uc001xmz.1_Missense_Mutation_p.R82Q	NM_004296	NP_004287	P49758	RGS6_HUMAN	regulator of G-protein signalling 6	221					G-protein coupled receptor protein signaling pathway|intracellular signal transduction|negative regulation of signal transduction|regulation of G-protein coupled receptor protein signaling pathway	cytoplasm|heterotrimeric G-protein complex	GTPase activator activity|signal transducer activity			upper_aerodigestive_tract(1)|lung(1)|skin(1)	3				all cancers(60;0.00309)|BRCA - Breast invasive adenocarcinoma(234;0.0281)|STAD - Stomach adenocarcinoma(64;0.0302)|OV - Ovarian serous cystadenocarcinoma(108;0.0476)		CGAAAATGTCGACGTTTGAAG	0.343													9	23					0	0	1	0	0
FAM161B	145483	broad.mit.edu	37	14	74402747	74402747	+	Silent	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr14:74402747C>T	uc001xpd.1	-	8	1816	c.1710G>A	c.(1708-1710)CTG>CTA	p.L570L		NM_152445	NP_689658			hypothetical protein LOC145483											ovary(1)	1						CAGCCTGCTTCAGGGTGTCTA	0.453													56	73					0	0	1	0	0
C14orf159	80017	broad.mit.edu	37	14	91655311	91655311	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr14:91655311C>T	uc001xzb.2	+	11	1745	c.977C>T	c.(976-978)TCG>TTG	p.S326L	C14orf159_uc010atv.1_RNA|C14orf159_uc001xyy.2_Missense_Mutation_p.S331L|C14orf159_uc001xyx.2_Missense_Mutation_p.S314L|C14orf159_uc001xyw.2_Missense_Mutation_p.S331L|C14orf159_uc001xzc.2_Missense_Mutation_p.S326L|C14orf159_uc001xza.2_Missense_Mutation_p.S331L|C14orf159_uc001xyv.2_Missense_Mutation_p.S331L|C14orf159_uc001xyz.2_Missense_Mutation_p.S202L|C14orf159_uc001xze.2_Missense_Mutation_p.S326L	NM_001102366	NP_001095836	Q7Z3D6	CN159_HUMAN	hypothetical protein LOC80017 isoform a	326						mitochondrion				central_nervous_system(2)|ovary(1)	3		all_cancers(154;0.0191)|all_epithelial(191;0.241)		Epithelial(152;0.141)|OV - Ovarian serous cystadenocarcinoma(161;0.207)		GCCTCTCTCTCGCTGTCCCAT	0.493													28	25					0	0	1	0	0
CATSPERB	79820	broad.mit.edu	37	14	92076928	92076928	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr14:92076928G>A	uc001xzs.1	-	21	2634	c.2494C>T	c.(2494-2496)CTC>TTC	p.L832F	CATSPERB_uc010aub.1_Missense_Mutation_p.L354F	NM_024764	NP_079040	Q9H7T0	CTSRB_HUMAN	cation channel, sperm-associated, beta	832					cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane				breast(2)|skin(2)|ovary(1)	5		all_cancers(154;0.0663)|all_epithelial(191;0.236)				ATAGATCTGAGATAACTACAG	0.398													20	31					0	0	1	0	0
SLC24A4	123041	broad.mit.edu	37	14	92909097	92909097	+	Silent	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr14:92909097C>T	uc001yak.2	+	6	492	c.468C>T	c.(466-468)ATC>ATT	p.I156I	SLC24A4_uc001yai.2_Silent_p.I109I|SLC24A4_uc010twm.1_Silent_p.I173I|SLC24A4_uc001yaj.2_Silent_p.I156I|SLC24A4_uc010auj.2_Silent_p.I64I|SLC24A4_uc010twn.1_5'Flank	NM_153646	NP_705932	Q8NFF2	NCKX4_HUMAN	solute carrier family 24 member 4 isoform 1	173	Alpha-1.|Helical; (Potential).					integral to membrane|plasma membrane	calcium, potassium:sodium antiporter activity|symporter activity			breast(2)|ovary(1)	3		all_cancers(154;0.0347)|all_epithelial(191;0.163)		Colorectal(1;0.00242)|COAD - Colon adenocarcinoma(157;0.047)|Epithelial(152;0.0781)|READ - Rectum adenocarcinoma(1;0.176)|all cancers(159;0.182)		TGGGCACCATCGTGGGCTCTG	0.612													43	82					0	0	1	0	0
DDX24	57062	broad.mit.edu	37	14	94517719	94517719	+	Silent	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr14:94517719G>A	uc001ycj.2	-	9	2497	c.2398C>T	c.(2398-2400)CTG>TTG	p.L800L	DDX24_uc010twq.1_Silent_p.L757L|DDX24_uc010twr.1_Silent_p.L550L	NM_020414	NP_065147	Q9GZR7	DDX24_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 24	800					RNA metabolic process	cytoplasm|nucleolus|nucleolus	ATP binding|ATP-dependent RNA helicase activity|protein binding|RNA binding			ovary(2)|kidney(1)|skin(1)	4		all_cancers(154;0.12)		Epithelial(152;0.114)|all cancers(159;0.19)|COAD - Colon adenocarcinoma(157;0.207)		TCCGTAAACAGTGGCTGGGAC	0.532											OREG0022891	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	48	57					0	0	1	0	0
BDKRB2	624	broad.mit.edu	37	14	96707571	96707571	+	Silent	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr14:96707571C>T	uc010avm.1	+	3	1102	c.906C>T	c.(904-906)TCC>TCT	p.S302S	BDKRB2_uc010avl.1_3'UTR|BDKRB2_uc010twu.1_Silent_p.S275S|BDKRB2_uc001yfg.2_Silent_p.S302S	NM_000623	NP_000614	P30411	BKRB2_HUMAN	bradykinin receptor B2	302	Extracellular (Potential).				arachidonic acid secretion|elevation of cytosolic calcium ion concentration|transmembrane receptor protein tyrosine kinase signaling pathway	endosome|integral to plasma membrane	bradykinin receptor activity|phosphatidylinositol phospholipase C activity|protease binding|protein heterodimerization activity|type 1 angiotensin receptor binding			ovary(3)|breast(1)|kidney(1)	5		all_cancers(154;0.0678)|Melanoma(154;0.155)|all_epithelial(191;0.179)		COAD - Colon adenocarcinoma(157;0.226)		GCATCCTCTCCAGCTGCCAGG	0.572													10	42					0	0	1	0	0
C14orf177	283598	broad.mit.edu	37	14	99183583	99183583	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr14:99183583G>A	uc001yfz.1	+	4	769	c.350G>A	c.(349-351)GGA>GAA	p.G117E		NM_182560	NP_872366	Q52M58	CN177_HUMAN	hypothetical protein LOC283598	117											0		Melanoma(154;0.128)				CTGTTCAAAGGAACTGTAGAA	0.413													21	36					0	0	1	0	0
BCL11B	64919	broad.mit.edu	37	14	99641932	99641932	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr14:99641932G>A	uc001yga.2	-	4	1508	c.1241C>T	c.(1240-1242)CCT>CTT	p.P414L	BCL11B_uc001ygb.2_Missense_Mutation_p.P343L	NM_138576	NP_612808	Q9C0K0	BC11B_HUMAN	B-cell CLL/lymphoma 11B isoform 1	414						nucleus	zinc ion binding			central_nervous_system(8)|large_intestine(1)|lung(1)	10		Melanoma(154;0.0866)|all_epithelial(191;0.241)		COAD - Colon adenocarcinoma(157;0.103)		CGTGCCGCCAGGGGGCATGGG	0.701			T	TLX3	T-ALL								7	3					0	0	1	0	0
MIR342	442909	broad.mit.edu	37	14	100576029	100576029	+	RNA	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr14:100576029G>A	hsa-mir-342|MI0000805	+			c.38G>A			EVL_uc001ygt.2_Intron|EVL_uc001ygv.2_Intron|EVL_uc001ygu.2_Intron|EVL_uc010avu.2_Intron																	0						atctgtgattgagggacatgg	0.259													6	18					0	0	1	0	0
DYNC1H1	1778	broad.mit.edu	37	14	102508460	102508460	+	Silent	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr14:102508460C>T	uc001yks.2	+	66	12377	c.12213C>T	c.(12211-12213)ATC>ATT	p.I4071I		NM_001376	NP_001367	Q14204	DYHC1_HUMAN	cytoplasmic dynein 1 heavy chain 1	4071	AAA 6 (By similarity).				cytoplasmic mRNA processing body assembly|G2/M transition of mitotic cell cycle|microtubule-based movement|mitotic spindle organization|stress granule assembly|transport	centrosome|cytoplasmic dynein complex|cytosol|Golgi apparatus|microtubule	ATP binding|ATPase activity, coupled|microtubule motor activity|protein binding			ovary(7)|central_nervous_system(2)|pancreas(1)	10						CAATTGCAATCGGTAAGGATG	0.537													23	26					0	0	1	0	0
PPP1R13B	23368	broad.mit.edu	37	14	104251219	104251219	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr14:104251219C>T	uc001yof.1	-	3	473	c.190G>A	c.(190-192)GAA>AAA	p.E64K	PPP1R13B_uc001yog.1_5'UTR	NM_015316	NP_056131	Q96KQ4	ASPP1_HUMAN	apoptosis-stimulating protein of p53, 1	64					apoptosis|induction of apoptosis|negative regulation of cell cycle	cytoplasm|nucleus|plasma membrane	protein binding			ovary(1)	1		all_cancers(154;0.173)|all_epithelial(191;0.131)|Melanoma(154;0.155)				TGAAGATGTTCGTACATCATA	0.398													30	35					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106757778	106757778	+	RNA	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr14:106757778C>T	uc010tyt.1	-	472		c.16287G>A								Parts of antibodies, mostly variable regions.												0						TAGGATTTTTCGTCATTCGAA	0.532													34	1					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106967396	106967396	+	RNA	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr14:106967396G>A	uc010tyt.1	-	201		c.9045C>T								Parts of antibodies, mostly variable regions.												0						CTCTAAACTGGAAAAAATCCC	0.562													39	39					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	107095315	107095315	+	RNA	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr14:107095315C>T	uc010tyt.1	-	101		c.4772G>A								Parts of antibodies, mostly variable regions.												0						GGATCCAGCTCCAGTAGTAAC	0.592													43	3					0	0	1	0	0
Unknown	0	broad.mit.edu	37	15	20649568	20649568	+	Silent	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr15:20649568C>T	uc001ytg.2	-	18	2650	c.1941G>A	c.(1939-1941)GGG>GGA	p.G647G	uc010tyx.1_RNA|uc001yth.3_Silent_p.G647G|uc010tyy.1_Silent_p.G647G					RecName: Full=Putative HERC2-like protein 3;																		TTCCTTCTTTCCCCATCCTGT	0.597													48	151					0	0	1	0	0
SNURF	8926	broad.mit.edu	37	15	25207350	25207350	+	Missense_Mutation	SNP	A	G	G			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr15:25207350A>G	uc001ywu.2	+	2	230	c.104A>G	c.(103-105)AAC>AGC	p.N35S	SNRPN_uc001ywp.1_5'UTR|SNRPN_uc001ywq.1_5'UTR|SNRPN_uc001ywr.1_5'UTR|SNRPN_uc001yws.1_5'UTR|SNRPN_uc001ywt.1_5'UTR|SNRPN_uc001ywv.1_5'UTR|SNRPN_uc001yww.1_5'UTR|SNRPN_uc001ywx.1_5'UTR|SNRPN_uc001ywz.1_RNA|PAR-SN_uc001yxa.1_RNA|SNRPN_uc001ywy.1_Missense_Mutation_p.N35S	NM_022804	NP_073715	Q9Y675	SNURF_HUMAN	SNRPN upstream reading frame protein	35						nucleus					0		all_cancers(20;1.4e-21)|Breast(32;0.000625)		all cancers(64;3.48e-07)|Epithelial(43;1.83e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0142)		TCACTGAGCAACCAAGAGTGA	0.438													41	51					0	0	1	0	0
GABRB3	2562	broad.mit.edu	37	15	26825509	26825509	+	Silent	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr15:26825509G>A	uc001zaz.2	-	6	781	c.639C>T	c.(637-639)ATC>ATT	p.I213I	GABRB3_uc010uae.1_Silent_p.I128I|GABRB3_uc001zba.2_Silent_p.I213I|GABRB3_uc001zbb.2_Silent_p.I269I	NM_000814	NP_000805	P28472	GBRB3_HUMAN	gamma-aminobutyric acid (GABA) A receptor, beta	213	Extracellular (Probable).				synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			upper_aerodigestive_tract(1)|ovary(1)|lung(1)|liver(1)|central_nervous_system(1)	5		all_cancers(20;1.89e-22)|all_lung(180;6.35e-15)|Breast(32;0.000279)|Colorectal(260;0.232)		all cancers(64;1.46e-07)|Epithelial(43;2.89e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0251)|COAD - Colon adenocarcinoma(236;0.235)|Lung(196;0.243)	Ethchlorvynol(DB00189)|Flurazepam(DB00690)|Lorazepam(DB00186)|Midazolam(DB00683)	GGTGCTCCACGATGGAGAACT	0.567													42	66					0	0	1	0	0
RPUSD2	27079	broad.mit.edu	37	15	40864065	40864065	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr15:40864065C>T	uc001zmd.1	+	2	869	c.869C>T	c.(868-870)TCT>TTT	p.S290F		NM_152260	NP_689473	Q8IZ73	RUSD2_HUMAN	RNA pseudouridylate synthase domain containing	290					pseudouridine synthesis		protein binding|pseudouridine synthase activity|RNA binding			skin(1)	1		all_cancers(109;2.74e-14)|all_epithelial(112;1.64e-11)|Lung NSC(122;6.69e-09)|all_lung(180;1.22e-07)|Melanoma(134;0.091)|Colorectal(260;0.175)|Ovarian(310;0.243)		GBM - Glioblastoma multiforme(113;3.1e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0786)		GCTGCAGTCTCTGAGAGAATT	0.552													54	65					0	0	1	0	0
SPG11	80208	broad.mit.edu	37	15	44900701	44900701	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr15:44900701G>A	uc001ztx.2	-	19	3425	c.3394C>T	c.(3394-3396)CCA>TCA	p.P1132S	SPG11_uc010ueh.1_Missense_Mutation_p.P1132S|SPG11_uc010uei.1_Missense_Mutation_p.P1132S	NM_025137	NP_079413	Q96JI7	SPTCS_HUMAN	spatacsin isoform 1	1132	Extracellular (Potential).				cell death	cytosol|integral to membrane|nucleus	protein binding			ovary(4)|skin(1)	5		all_cancers(109;1.29e-14)|all_epithelial(112;1.26e-12)|Lung NSC(122;1.34e-07)|all_lung(180;1.21e-06)|Melanoma(134;0.0122)		all cancers(107;2.93e-22)|GBM - Glioblastoma multiforme(94;1.55e-06)|COAD - Colon adenocarcinoma(120;0.0432)|Colorectal(105;0.0484)|Lung(196;0.104)|LUSC - Lung squamous cell carcinoma(244;0.214)		GTGCACTGTGGGAAGAGAGCA	0.393													34	64					0	0	1	0	0
C15orf43	145645	broad.mit.edu	37	15	45253724	45253724	+	Missense_Mutation	SNP	T	C	C			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr15:45253724T>C	uc001zuk.2	+	4	307	c.290T>C	c.(289-291)ATA>ACA	p.I97T		NM_152448	NP_689661	Q8NHR7	CO043_HUMAN	hypothetical protein LOC145645	97											0		all_cancers(109;3.68e-08)|all_epithelial(112;1.05e-06)|Lung NSC(122;1.42e-05)|all_lung(180;0.000112)|Melanoma(134;0.0192)		all cancers(107;7.64e-17)|GBM - Glioblastoma multiforme(94;2.03e-06)		ACCACAGAAATAAGAAGAAAA	0.299													12	15					0	0	1	0	0
ATP8B4	79895	broad.mit.edu	37	15	50330995	50330995	+	Missense_Mutation	SNP	T	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr15:50330995T>A	uc001zxu.2	-	6	474	c.332A>T	c.(331-333)AAT>ATT	p.N111I	ATP8B4_uc010ber.2_5'UTR|ATP8B4_uc010ufd.1_5'UTR|ATP8B4_uc010ufe.1_RNA	NM_024837	NP_079113	Q8TF62	AT8B4_HUMAN	ATPase class I type 8B member 4	111	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			skin(3)|ovary(2)|breast(2)|large_intestine(1)	8		all_lung(180;0.00183)		all cancers(107;2.41e-07)|GBM - Glioblastoma multiforme(94;8.28e-05)		AGACTGCCGATTATTCACTTG	0.398													28	45					0	0	1	0	0
Unknown	0	broad.mit.edu	37	15	62539252	62539252	+	RNA	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr15:62539252C>T	uc002ain.1	-	4		c.338G>A			uc002ajj.1_Silent_p.T140T|uc010uhp.1_5'Flank|uc002ajt.2_5'Flank|uc002ajw.2_5'Flank|uc010uhq.1_5'Flank|uc002ajx.2_5'Flank|uc002ajy.2_5'Flank					Homo sapiens cDNA FLJ38723 fis, clone KIDNE2010137, weakly similar to GOLGIN-95.																		CAGCCAAGATCGTCTCCAGCT	0.607													25	36					0	0	1	0	0
HERC1	8925	broad.mit.edu	37	15	64005849	64005849	+	Missense_Mutation	SNP	A	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr15:64005849A>T	uc002amp.2	-	23	4314	c.4166T>A	c.(4165-4167)TTC>TAC	p.F1389Y	HERC1_uc010uil.1_Missense_Mutation_p.F373Y	NM_003922	NP_003913	Q15751	HERC1_HUMAN	hect domain and RCC1-like domain 1	1389					protein modification process|transport	cytosol|Golgi apparatus|membrane	acid-amino acid ligase activity|ARF guanyl-nucleotide exchange factor activity			ovary(6)|breast(6)|lung(5)|central_nervous_system(2)	19						GGCTGAGAGGAAACACTGAAA	0.448													7	10					0	0	1	0	0
ADAMTS7	11173	broad.mit.edu	37	15	79058703	79058703	+	Silent	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr15:79058703G>A	uc002bej.3	-	19	3761	c.3550C>T	c.(3550-3552)CTG>TTG	p.L1184L	ADAMTS7_uc010und.1_3'UTR	NM_014272	NP_055087	Q9UKP4	ATS7_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1184					proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0						GGTGTCTGCAGGCCATCAGTG	0.602													13	14					0	0	1	0	0
KIAA1024	23251	broad.mit.edu	37	15	79755513	79755513	+	Silent	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr15:79755513C>T	uc002bew.1	+	3	2478	c.2403C>T	c.(2401-2403)TCC>TCT	p.S801S	KIAA1024_uc010unk.1_Silent_p.S801S	NM_015206	NP_056021	Q9UPX6	K1024_HUMAN	hypothetical protein LOC23251	801						integral to membrane				pancreas(2)|ovary(1)|central_nervous_system(1)	4						ACCCTGCCTCCCTCAAGGCCC	0.607													50	61					0	0	1	0	0
ALPK3	57538	broad.mit.edu	37	15	85411669	85411669	+	Silent	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr15:85411669G>A	uc002ble.2	+	14	5873	c.5706G>A	c.(5704-5706)AAG>AAA	p.K1902K	ALPK3_uc010upc.1_Silent_p.K203K	NM_020778	NP_065829	Q96L96	ALPK3_HUMAN	alpha-kinase 3	1902					heart development	nucleus	ATP binding|protein serine/threonine kinase activity			stomach(3)|ovary(3)|lung(2)|skin(2)|central_nervous_system(1)|breast(1)	12			BRCA - Breast invasive adenocarcinoma(143;0.0587)			AGGGCTCCAAGGCCCAGGGCA	0.617													15	18					0	0	1	0	0
NTRK3	4916	broad.mit.edu	37	15	88669548	88669548	+	Silent	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr15:88669548G>A	uc002bme.1	-	12	1512	c.1350C>T	c.(1348-1350)TTC>TTT	p.F450F	NTRK3_uc002bmh.2_Silent_p.F442F|NTRK3_uc002bmf.1_Silent_p.F450F|NTRK3_uc010upl.1_Silent_p.F352F|NTRK3_uc010bnh.1_Silent_p.F442F|NTRK3_uc002bmg.2_Silent_p.F450F	NM_001012338	NP_001012338	Q16288	NTRK3_HUMAN	neurotrophic tyrosine kinase, receptor, type 3	450	Helical; (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity		ETV6/NTRK3(234)	soft_tissue(85)|kidney(66)|breast(56)|salivary_gland(26)|lung(22)|large_intestine(6)|ovary(6)|stomach(5)|central_nervous_system(3)|pancreas(3)|haematopoietic_and_lymphoid_tissue(2)|skin(1)	281			BRCA - Breast invasive adenocarcinoma(143;0.211)			TGATCATGACGAAGAGAACCA	0.453			T	ETV6	congenital fibrosarcoma|Secretory breast 					TSP Lung(13;0.10)			20	55					0	0	1	0	0
SYNM	23336	broad.mit.edu	37	15	99671446	99671447	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr15:99671446_99671447CC>TT	uc002bup.2	+	6	3001_3002	c.2881_2882CC>TT	c.(2881-2883)CCC>TTC	p.P961F	SYNM_uc002buo.2_Missense_Mutation_p.P961F|SYNM_uc002buq.2_Intron	NM_145728	NP_663780	O15061	SYNEM_HUMAN	desmuslin isoform A	961	Tail.				intermediate filament cytoskeleton organization	adherens junction|costamere|intermediate filament|neurofilament cytoskeleton	intermediate filament binding|structural constituent of cytoskeleton|structural constituent of muscle|vinculin binding			ovary(3)|central_nervous_system(1)	4						GGAAACCCTTCCCGAGCGCATG	0.634													9	13					0	0	1	0	0
Unknown	0	broad.mit.edu	37	15	102292727	102292727	+	Silent	SNP	A	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr15:102292727A>T	uc010usj.1	+	4	374	c.315A>T	c.(313-315)GGA>GGT	p.G105G	uc002bxp.3_5'Flank|uc002bxt.2_5'Flank|uc002bxz.3_5'Flank|uc002byd.2_5'Flank|uc002bye.2_5'Flank|uc002byf.1_5'Flank|uc002byg.2_5'Flank|uc002byi.2_5'Flank|uc002byk.2_5'Flank|uc002bym.2_5'Flank|uc002byn.2_5'Flank|uc010usm.1_5'Flank					RecName: Full=Uncharacterized protein C15orf51.; Flags: Fragment;																		GGGAACAAGGAGACACTCCTG	0.582													18	17					0	0	1	0	0
SSTR5	6755	broad.mit.edu	37	16	1129256	1129256	+	Silent	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr16:1129256C>T	uc002ckq.2	+	1	476	c.388C>T	c.(388-390)CTG>TTG	p.L130L	LOC146336_uc002cko.2_5'Flank|LOC146336_uc002ckp.1_5'Flank	NM_001053	NP_001044	P35346	SSR5_HUMAN	somatostatin receptor 5	130	Helical; Name=3; (Potential).				negative regulation of cell proliferation	integral to plasma membrane	somatostatin receptor activity			lung(1)	1		Hepatocellular(780;0.00369)			Octreotide(DB00104)	TGTCTTCTGCCTGACAGTCAT	0.706													17	43					0	0	1	0	0
IFT140	9742	broad.mit.edu	37	16	1570724	1570724	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr16:1570724G>A	uc002cmb.2	-	27	3901	c.3539C>T	c.(3538-3540)TCC>TTC	p.S1180F	IFT140_uc002clz.2_Missense_Mutation_p.S793F	NM_014714	NP_055529	Q96RY7	IF140_HUMAN	intraflagellar transport 140	1180										ovary(3)|pancreas(1)|skin(1)	5		Hepatocellular(780;0.219)				CAGGTCCGAGGAGTCCTTGGC	0.612													13	14					0	0	1	0	0
PKD1	5310	broad.mit.edu	37	16	2154633	2154633	+	Missense_Mutation	SNP	C	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr16:2154633C>A	uc002cos.1	-	22	8236	c.8027G>T	c.(8026-8028)AGG>ATG	p.R2676M	PKD1_uc002cot.1_Missense_Mutation_p.R2676M|PKD1_uc010bse.1_5'Flank	NM_001009944	NP_001009944	P98161	PKD1_HUMAN	polycystin 1 isoform 1 precursor	2676	Extracellular (Potential).|REJ.				calcium-independent cell-matrix adhesion|homophilic cell adhesion|neuropeptide signaling pathway	basolateral plasma membrane|integral to plasma membrane	protein domain specific binding|sugar binding			central_nervous_system(2)|skin(1)	3						TACGAGCTCCCTGCTGGGCCC	0.677													4	12					1.12685e-05	1.13359e-05	1	1	0
CLDN9	9080	broad.mit.edu	37	16	3063628	3063628	+	Silent	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr16:3063628C>T	uc010uwo.1	+	1	1172	c.265C>T	c.(265-267)CTG>TTG	p.L89L		NM_020982	NP_066192	O95484	CLD9_HUMAN	claudin 9	89	Helical; (Potential).				calcium-independent cell-cell adhesion|tight junction assembly	integral to membrane|tight junction	identical protein binding|structural molecule activity				0						CATTGCCCTCCTGCTGGCCCT	0.657													31	41					0	0	1	0	0
CLDN6	9074	broad.mit.edu	37	16	3065797	3065797	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr16:3065797C>T	uc002csu.3	-	2	286	c.226G>A	c.(226-228)GAC>AAC	p.D76N		NM_021195	NP_067018	P56747	CLD6_HUMAN	claudin 6	76	Extracellular (Potential).				calcium-independent cell-cell adhesion	integral to membrane|tight junction	identical protein binding|structural molecule activity				0						GCCTGCAGGTCCTGTGGCAGC	0.642													31	44					0	0	1	0	0
ACSM2B	348158	broad.mit.edu	37	16	20566602	20566602	+	Silent	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr16:20566602C>T	uc002dhj.3	-	5	795	c.585G>A	c.(583-585)AAG>AAA	p.K195K	ACSM2B_uc002dhk.3_Silent_p.K195K|ACSM2B_uc010bwf.1_Silent_p.K195K	NM_182617	NP_872423	Q68CK6	ACS2B_HUMAN	acyl-CoA synthetase medium-chain family member	195					fatty acid metabolic process|xenobiotic metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|CoA-ligase activity|metal ion binding			skin(3)|ovary(1)|central_nervous_system(1)	5						TTAGTAGTTTCTTGAAGTTCA	0.269													76	122					0	0	1	0	0
ACSM1	116285	broad.mit.edu	37	16	20635466	20635466	+	Silent	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr16:20635466C>T	uc002dhm.1	-	12	1667	c.1599G>A	c.(1597-1599)CTG>CTA	p.L533L	ACSM1_uc002dhn.1_RNA|ACSM1_uc010bwg.1_Silent_p.L533L	NM_052956	NP_443188	Q08AH1	ACSM1_HUMAN	acyl-CoA synthetase medium-chain family member	533					benzoate metabolic process|butyrate metabolic process|energy derivation by oxidation of organic compounds|fatty acid oxidation|xenobiotic metabolic process	mitochondrial matrix	acyl-CoA ligase activity|ATP binding|butyrate-CoA ligase activity|GTP binding|metal ion binding			central_nervous_system(1)|skin(1)	2						CATGCTGCTGCAGTTCCTTGG	0.542													75	87					0	0	1	0	0
DNAH3	55567	broad.mit.edu	37	16	20975440	20975441	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr16:20975440_20975441CC>TT	uc010vbe.1	-	53	9765_9766	c.9765_9766GG>AA	c.(9763-9768)GAGGAT>GAAAAT	p.D3256N	DNAH3_uc010vbd.1_Missense_Mutation_p.D691N	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	3256	AAA 5 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		GCGGTTTCATCCTCCAGGATGT	0.441													59	56					0	0	1	0	0
VWA3A	146177	broad.mit.edu	37	16	22151497	22151497	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr16:22151497G>A	uc010vbq.1	+	23	2411	c.2315G>A	c.(2314-2316)AGA>AAA	p.R772K	VWA3A_uc010bxd.2_RNA	NM_173615	NP_775886	A6NCI4	VWA3A_HUMAN	von Willebrand factor A domain containing 3A	772						extracellular region				skin(1)	1				GBM - Glioblastoma multiforme(48;0.0439)		GACCCTGACAGAGAGAAGAGC	0.522													8	24					0	0	1	0	0
UBFD1	56061	broad.mit.edu	37	16	23569288	23569288	+	Missense_Mutation	SNP	A	G	G			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr16:23569288A>G	uc002dlv.2	+	2	245	c.43A>G	c.(43-45)ATG>GTG	p.M15V	EARS2_uc002dls.3_5'Flank|EARS2_uc002dlt.3_5'Flank|EARS2_uc002dlu.2_5'Flank	NM_019116	NP_061989	O14562	UBFD1_HUMAN	ubiquitin-binding protein homolog	15											0				GBM - Glioblastoma multiforme(48;0.0331)		GGAACCTGGCATGGACACGGA	0.632													8	7					0	0	1	0	0
TNRC6A	27327	broad.mit.edu	37	16	24804818	24804818	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr16:24804818C>T	uc002dmm.2	+	7	3314	c.3200C>T	c.(3199-3201)CCT>CTT	p.P1067L	TNRC6A_uc010bxs.2_Missense_Mutation_p.P814L|TNRC6A_uc010vcc.1_Missense_Mutation_p.P814L|TNRC6A_uc002dmn.2_Missense_Mutation_p.P814L|TNRC6A_uc002dmo.2_Intron	NM_014494	NP_055309	Q8NDV7	TNR6A_HUMAN	trinucleotide repeat containing 6A	1067	Sufficient for interaction with EIF2C1 and EIF2C4.				negative regulation of translation involved in gene silencing by miRNA	cytoplasmic mRNA processing body|micro-ribonucleoprotein complex	nucleotide binding|RNA binding			ovary(2)	2				GBM - Glioblastoma multiforme(48;0.0394)		TGGGGGGAGCCTTCTACTCCA	0.527													32	41					0	0	1	0	0
GTF3C1	2975	broad.mit.edu	37	16	27480849	27480849	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr16:27480849C>T	uc002dov.1	-	32	4877	c.4837G>A	c.(4837-4839)GAG>AAG	p.E1613K	GTF3C1_uc002dou.2_Missense_Mutation_p.E1613K	NM_001520	NP_001511	Q12789	TF3C1_HUMAN	general transcription factor IIIC, polypeptide	1613	Asp/Glu-rich (acidic).					transcription factor TFIIIC complex	DNA binding|protein binding			ovary(2)|pancreas(1)|breast(1)|skin(1)	5						TCGTCATCCTCCAGGCTGCCG	0.587													54	70					0	0	1	0	0
TUFM	7284	broad.mit.edu	37	16	28855302	28855302	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr16:28855302G>A	uc002drh.2	-	8	1182	c.1043C>T	c.(1042-1044)TCC>TTC	p.S348F	uc010vct.1_Intron|SH2B1_uc002dri.2_5'Flank	NM_003321	NP_003312	P49411	EFTU_HUMAN	Tu translation elongation factor, mitochondrial	345						mitochondrial nucleoid	GTP binding|GTPase activity|protein binding|translation elongation factor activity			ovary(1)	1						GGGCTTGATGGAACCTGGCTT	0.677													14	21					0	0	1	0	0
ATP2A1	487	broad.mit.edu	37	16	28914167	28914167	+	Silent	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr16:28914167C>T	uc002dro.1	+	19	2863	c.2679C>T	c.(2677-2679)GCC>GCT	p.A893A	uc010vct.1_Intron|ATP2A1_uc002drn.1_Silent_p.A893A|ATP2A1_uc002drp.1_Silent_p.A768A	NM_173201	NP_775293	O14983	AT2A1_HUMAN	ATPase, Ca++ transporting, fast twitch 1 isoform	893	Lumenal (By similarity).				apoptosis in response to endoplasmic reticulum stress|apoptotic mitochondrial changes|ATP biosynthetic process|calcium ion import|elevation of endoplasmic reticulum calcium ion concentration|elevation of mitochondrial calcium ion concentration|maintenance of mitochondrion location|negative regulation of striated muscle contraction|platelet activation|positive regulation of fast-twitch skeletal muscle fiber contraction|reduction of endoplasmic reticulum calcium ion concentration|relaxation of skeletal muscle|response to endoplasmic reticulum stress	endoplasmic reticulum membrane|ER-Golgi intermediate compartment|H zone|I band|microsome|perinuclear region of cytoplasm|platelet dense tubular network membrane|sarcoplasmic reticulum|sarcoplasmic reticulum membrane	ATP binding|ATP binding|calcium ion binding|calcium ion binding|calcium-transporting ATPase activity|protein homodimerization activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						TCTTCGAGGCCCCCGAGCCCA	0.617													18	25					0	0	1	0	0
KIF22	3835	broad.mit.edu	37	16	29811295	29811295	+	Silent	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr16:29811295C>T	uc002dts.3	+	8	1230	c.1206C>T	c.(1204-1206)GCC>GCT	p.A402A	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|KIF22_uc010vdv.1_Silent_p.A334A|KIF22_uc010vdw.1_Silent_p.A334A|KIF22_uc010bzf.2_Silent_p.A334A	NM_007317	NP_015556	Q14807	KIF22_HUMAN	kinesin family member 22	402					blood coagulation|DNA repair|microtubule-based movement|mitosis	cytosol|kinetochore|microtubule|nucleus	ATP binding|DNA binding|microtubule motor activity|protein binding				0						CAAAGAGAGCCCGAGGCCCTG	0.587													13	44					0	0	1	0	0
SRCAP	10847	broad.mit.edu	37	16	30748473	30748473	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr16:30748473C>T	uc002dze.1	+	34	7497	c.7112C>T	c.(7111-7113)TCC>TTC	p.S2371F	SRCAP_uc002dzf.2_RNA|SRCAP_uc002dzg.1_Missense_Mutation_p.S2166F	NM_006662	NP_006653	Q6ZRS2	SRCAP_HUMAN	Snf2-related CBP activator protein	2371					interspecies interaction between organisms|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	Golgi apparatus|nucleus|protein complex	ATP binding|DNA binding|helicase activity|histone acetyltransferase activity|transcription coactivator activity			ovary(3)|skin(1)	4			Colorectal(24;0.198)			GATGAGAGTTCCTGTGGGACT	0.652													15	20					0	0	1	0	0
NOD2	64127	broad.mit.edu	37	16	50745604	50745604	+	Silent	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr16:50745604G>A	uc002egm.1	+	4	1887	c.1782G>A	c.(1780-1782)GGG>GGA	p.G594G	NOD2_uc010cbk.1_Silent_p.G567G|NOD2_uc002egl.1_Silent_p.G372G|NOD2_uc010cbl.1_Silent_p.G372G|NOD2_uc010cbm.1_Silent_p.G372G|NOD2_uc010cbn.1_RNA|NOD2_uc010cbo.1_RNA|NOD2_uc010cbp.1_5'Flank|NOD2_uc010cbq.1_5'Flank|NOD2_uc010cbr.1_5'Flank	NM_022162	NP_071445	Q9HC29	NOD2_HUMAN	nucleotide-binding oligomerization domain	594	NACHT.				activation of MAPK activity involved in innate immune response|cytokine production involved in immune response|detection of bacterium|detection of muramyl dipeptide|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of macrophage apoptosis|nucleotide-binding oligomerization domain containing 2 signaling pathway|positive regulation of B cell activation|positive regulation of dendritic cell antigen processing and presentation|positive regulation of epithelial cell proliferation|positive regulation of ERK1 and ERK2 cascade|positive regulation of gamma-delta T cell activation|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interleukin-1 beta secretion|positive regulation of interleukin-10 production|positive regulation of interleukin-17 production|positive regulation of interleukin-6 production|positive regulation of JNK cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of Notch signaling pathway|positive regulation of phosphatidylinositol 3-kinase activity|positive regulation of prostaglandin-E synthase activity|positive regulation of prostaglandin-endoperoxide synthase activity|positive regulation of stress-activated MAPK cascade|positive regulation of tumor necrosis factor production|positive regulation of type 2 immune response|protein oligomerization|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cell surface|cytosol|plasma membrane|vesicle	ATP binding|CARD domain binding|muramyl dipeptide binding|protein kinase binding			ovary(3)|skin(1)	4		all_cancers(37;0.0156)				TCGTGCCAGGGAGTACGGCGC	0.577													7	3					0	0	1	0	0
IRX5	10265	broad.mit.edu	37	16	54966458	54966458	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr16:54966458C>T	uc002ehv.2	+	2	298	c.298C>T	c.(298-300)CAT>TAT	p.H100Y	IRX5_uc010cca.1_Missense_Mutation_p.H152Y|IRX5_uc002ehw.2_Missense_Mutation_p.H34Y	NM_005853	NP_005844	P78411	IRX5_HUMAN	iroquois homeobox protein 5	100					response to stimulus|visual perception	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|vitamin D binding				0						CTTGGGGTACCATCCTTACGC	0.657													22	11					0	0	1	0	0
NLRC5	84166	broad.mit.edu	37	16	57060508	57060508	+	Silent	SNP	C	G	G			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr16:57060508C>G	uc002ekk.1	+	6	1878	c.1653C>G	c.(1651-1653)ACC>ACG	p.T551T	NLRC5_uc010ccq.1_RNA|NLRC5_uc002ekn.2_Silent_p.T356T|NLRC5_uc002ekl.2_Silent_p.T356T|NLRC5_uc002ekm.2_Silent_p.T356T|NLRC5_uc010ccr.1_RNA	NM_032206	NP_115582	Q86WI3	NLRC5_HUMAN	nucleotide-binding oligomerization domains 27	551					defense response to virus|innate immune response|negative regulation of NF-kappaB transcription factor activity|negative regulation of type I interferon production|negative regulation of type I interferon-mediated signaling pathway|positive regulation of interferon-gamma-mediated signaling pathway|positive regulation of MHC class I biosynthetic process|positive regulation of transcription from RNA polymerase II promoter|positive regulation of type I interferon-mediated signaling pathway|regulation of kinase activity	cytosol|nucleus	ATP binding|protein binding|RNA polymerase II core promoter sequence-specific DNA binding			ovary(4)|skin(2)|breast(1)	7		all_neural(199;0.225)				TACAGCGGACCAAAGCTAGAC	0.612													52	11					0	0	1	0	0
CDH5	1003	broad.mit.edu	37	16	66426129	66426129	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr16:66426129G>A	uc002eom.3	+	7	1216	c.1060G>A	c.(1060-1062)GGA>AGA	p.G354R	CDH5_uc002eon.1_Missense_Mutation_p.G354R	NM_001795	NP_001786	P33151	CADH5_HUMAN	cadherin 5, type 2 preproprotein	354	Cadherin 3.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion|regulation of establishment of cell polarity	integral to membrane|membrane fraction	beta-catenin binding|calcium ion binding|ion channel binding|receptor binding			ovary(2)|lung(2)|central_nervous_system(1)|skin(1)	6		Ovarian(137;0.0955)		OV - Ovarian serous cystadenocarcinoma(108;0.107)		CCCTCCCGCGGGAAACAGAGC	0.527													88	15					0	0	1	0	0
CES2	8824	broad.mit.edu	37	16	66976133	66976133	+	Silent	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr16:66976133C>T	uc002eqr.2	+	9	2455	c.1455C>T	c.(1453-1455)CTC>CTT	p.L485L	CES2_uc002eqq.2_Silent_p.L485L|CES2_uc002eqs.2_Silent_p.L328L	NM_003869	NP_003860	O00748	EST2_HUMAN	carboxylesterase 2 isoform 1	421					catabolic process	endoplasmic reticulum lumen	carboxylesterase activity|methyl indole-3-acetate esterase activity|methyl jasmonate esterase activity|methyl salicylate esterase activity				0		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0663)|Epithelial(162;0.166)		TCCCTGCACTCCAAGTAGCAC	0.572													40	13					0	0	1	0	0
CES8	283848	broad.mit.edu	37	16	67038035	67038035	+	Missense_Mutation	SNP	G	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr16:67038035G>T	uc002eqv.2	+	9	1031	c.988G>T	c.(988-990)GAC>TAC	p.D330Y	CES8_uc010vix.1_Missense_Mutation_p.D330Y|CES8_uc002eqw.2_Missense_Mutation_p.D330Y|CES8_uc002eqy.2_Missense_Mutation_p.D232Y|CES8_uc002eqx.2_Missense_Mutation_p.D136Y|CES8_uc010viy.1_Missense_Mutation_p.D236Y|CES8_uc010viz.1_Missense_Mutation_p.D232Y|CES8_uc002eqz.2_5'Flank	NM_173815	NP_776176	Q5XG92	EST4A_HUMAN	carboxylesterase 8 (putative)	330						extracellular region	carboxylesterase activity				0						GATCCCAGATGACCCTTTGGT	0.512													4	68					1	1	1	1	0
LRRC29	26231	broad.mit.edu	37	16	67241973	67241973	+	Silent	SNP	C	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr16:67241973C>A	uc002esd.2	-	3	1203	c.306G>T	c.(304-306)CTG>CTT	p.L102L	LRRC29_uc002ese.2_Silent_p.L102L|LRRC29_uc002esf.2_Silent_p.L102L|LRRC29_uc002esg.2_Silent_p.L102L	NM_012163	NP_036295	Q8WV35	LRC29_HUMAN	F-box and leucine-rich repeat protein 9	102	LRR 3.										0		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.000691)|Epithelial(162;0.00462)|all cancers(182;0.0434)		ACAGCTGCCTCAGCTGGAGAA	0.597													5	1					0.000602214	0.000604009	1	1	0
FHOD1	29109	broad.mit.edu	37	16	67272111	67272111	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr16:67272111G>A	uc002esl.2	-	5	653	c.541C>T	c.(541-543)CTT>TTT	p.L181F	FHOD1_uc010ced.2_5'UTR|FHOD1_uc010vjh.1_5'UTR	NM_013241	NP_037373	Q9Y613	FHOD1_HUMAN	formin homology 2 domain containing 1	181	GBD/FH3.				actin cytoskeleton organization	cytoplasm|cytoskeleton|nucleus	actin binding			breast(2)|ovary(1)	3		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.000691)|Epithelial(162;0.00462)|all cancers(182;0.0434)		TGACCTCTAAGGATGTAGCTC	0.612													26	4					0	0	1	0	0
MLKL	197259	broad.mit.edu	37	16	74719433	74719433	+	Silent	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr16:74719433G>A	uc002fdb.2	-	5	1212	c.771C>T	c.(769-771)TTC>TTT	p.F257F	MLKL_uc002fdc.2_Intron	NM_152649	NP_689862	Q8NB16	MLKL_HUMAN	mixed lineage kinase domain-like isoform 1	257	Protein kinase.						ATP binding|protein binding|protein kinase activity			stomach(2)	2						TGGGAGATTCGAATTTCTTCA	0.333													13	2					0	0	1	0	0
KARS	3735	broad.mit.edu	37	16	75669983	75669983	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr16:75669983C>T	uc002feq.2	-	5	544	c.496G>A	c.(496-498)GAA>AAA	p.E166K	KARS_uc002fer.2_Missense_Mutation_p.E194K|KARS_uc002fes.2_Missense_Mutation_p.E10K|KARS_uc010cgz.2_Missense_Mutation_p.E10K	NM_005548	NP_005539	Q15046	SYK_HUMAN	lysyl-tRNA synthetase isoform 2	166					interspecies interaction between organisms|lysyl-tRNA aminoacylation|tRNA processing	cytosol|extracellular region|mitochondrial matrix|nucleus|plasma membrane|soluble fraction	ATP binding|lysine-tRNA ligase activity|metal ion binding|tRNA binding			ovary(2)	2					L-Lysine(DB00123)	AATTCTTCTTCTGATTTATAA	0.378													7	2					0	0	1	0	0
CDYL2	124359	broad.mit.edu	37	16	80654731	80654731	+	Missense_Mutation	SNP	A	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr16:80654731A>T	uc002ffs.2	-	4	1041	c.936T>A	c.(934-936)GAT>GAA	p.D312E		NM_152342	NP_689555	Q8N8U2	CDYL2_HUMAN	chromodomain protein, Y-like 2	312						nucleus	catalytic activity|protein binding			central_nervous_system(1)	1						GGTAGGAATAATCCAGGCCGC	0.582													27	4					0	0	1	0	0
JPH3	57338	broad.mit.edu	37	16	87678630	87678630	+	Silent	SNP	C	T	T	rs140186033	by1000genomes	TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr16:87678630C>T	uc002fkd.2	+	2	1403	c.1149C>T	c.(1147-1149)ATC>ATT	p.I383I	JPH3_uc010vou.1_RNA	NM_020655	NP_065706	Q8WXH2	JPH3_HUMAN	junctophilin 3	383	Ala-rich.|Cytoplasmic (Potential).				calcium ion transport into cytosol|regulation of ryanodine-sensitive calcium-release channel activity	integral to membrane|junctional sarcoplasmic reticulum membrane|plasma membrane	protein binding			ovary(1)|pancreas(1)	2				BRCA - Breast invasive adenocarcinoma(80;0.0287)		AGGCTGAGATCGCGGCTTCCA	0.672													18	1					0	0	1	0	0
SLC7A5	8140	broad.mit.edu	37	16	87874041	87874041	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr16:87874041G>A	uc002fkm.2	-	4	881	c.809C>T	c.(808-810)CCC>CTC	p.P270L		NM_003486	NP_003477	Q01650	LAT1_HUMAN	solute carrier family 7 (cationic amino acid	270					blood coagulation|cell differentiation|cellular amino acid metabolic process|ion transport|leukocyte migration|nervous system development	apical plasma membrane|cytosol|integral to membrane	neutral amino acid transmembrane transporter activity|peptide antigen binding				0				BRCA - Breast invasive adenocarcinoma(80;0.049)		GTACCTGTAGGGGTTGATCAT	0.423													25	7					0	0	1	0	0
PRPF8	10594	broad.mit.edu	37	17	1564010	1564010	+	Silent	SNP	C	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr17:1564010C>A	uc002fte.2	-	29	4734	c.4620G>T	c.(4618-4620)CCG>CCT	p.P1540P		NM_006445	NP_006436	Q6P2Q9	PRP8_HUMAN	U5 snRNP-specific protein	1540						catalytic step 2 spliceosome|nuclear speck|U5 snRNP	protein binding|RNA binding			lung(4)|ovary(2)	6				UCEC - Uterine corpus endometrioid carcinoma (25;0.0855)		GATTAATGGTCGGGGACCACC	0.498													37	45					6.2361e-21	6.32063e-21	1	1	0
METT10D	79066	broad.mit.edu	37	17	2381097	2381097	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr17:2381097G>A	uc002fut.2	-	3	359	c.211C>T	c.(211-213)CCA>TCA	p.P71S	METT10D_uc002fuu.3_RNA|METT10D_uc010cka.2_RNA|METT10D_uc002fuv.2_Missense_Mutation_p.P71S|METT10D_uc010vqx.1_RNA|METT10D_uc010vqy.1_5'UTR	NM_024086	NP_076991	Q86W50	MET16_HUMAN	methyltransferase 10 domain containing	71							methyltransferase activity				0						CTCTCCAATGGAATATCAATA	0.423													41	55					0	0	1	0	0
OR3A4	390756	broad.mit.edu	37	17	3213767	3213767	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr17:3213767G>A	uc002fvi.2	+	1	229	c.163G>A	c.(163-165)GAA>AAA	p.E55K		NR_024128				RecName: Full=Olfactory receptor 3A4; AltName: Full=Olfactory receptor 17-24;          Short=OR17-24;											ovary(1)	1						CATCCTTATGGAAACCAAACT	0.537													24	47					0	0	1	0	0
TM4SF5	9032	broad.mit.edu	37	17	4686150	4686150	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr17:4686150G>A	uc002fyw.1	+	4	428	c.397G>A	c.(397-399)GGA>AGA	p.G133R		NM_003963	NP_003954	O14894	T4S5_HUMAN	transmembrane 4 superfamily member 5	133	Extracellular (Potential).					integral to plasma membrane				ovary(1)	1						CTCCCACAGGGGAGCTTACTT	0.667													33	34					0	0	1	0	0
NLRP1	22861	broad.mit.edu	37	17	5425071	5425071	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr17:5425071G>A	uc002gci.2	-	13	4111	c.3556C>T	c.(3556-3558)CAC>TAC	p.H1186Y	NLRP1_uc002gcg.1_Missense_Mutation_p.H1190Y|NLRP1_uc002gck.2_Missense_Mutation_p.H1186Y|NLRP1_uc002gcj.2_Missense_Mutation_p.H1156Y|NLRP1_uc002gcl.2_Missense_Mutation_p.H1156Y|NLRP1_uc002gch.3_Missense_Mutation_p.H1186Y	NM_033004	NP_127497	Q9C000	NALP1_HUMAN	NLR family, pyrin domain containing 1 isoform 1	1186					defense response to bacterium|induction of apoptosis|neuron apoptosis|positive regulation of interleukin-1 beta secretion|response to muramyl dipeptide	cytoplasm|NALP1 inflammasome complex|nucleus	ATP binding|caspase activator activity|enzyme binding|protein domain specific binding			lung(4)|breast(2)|ovary(1)|central_nervous_system(1)|skin(1)	9		Colorectal(1115;3.48e-05)				TCTTTAAAGTGGGCCATTTGG	0.453													39	35					0	0	1	0	0
EFNB3	1949	broad.mit.edu	37	17	7611307	7611307	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr17:7611307C>T	uc002gis.2	+	2	551	c.154C>T	c.(154-156)CCT>TCT	p.P52S		NM_001406	NP_001397	Q15768	EFNB3_HUMAN	ephrin-B3 precursor	52	Extracellular (Potential).				cell-cell signaling|interspecies interaction between organisms	integral to plasma membrane	ephrin receptor binding|transmembrane-ephrin receptor activity			ovary(1)	1		all_cancers(10;1.14e-06)|Prostate(122;0.081)				TGTGCTGTACCCTCAGATCGG	0.597													27	43					0	0	1	0	0
DNAH2	146754	broad.mit.edu	37	17	7720727	7720727	+	Silent	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr17:7720727C>T	uc002giu.1	+	64	10028	c.10014C>T	c.(10012-10014)ATC>ATT	p.I3338I	DNAH2_uc010cnm.1_Silent_p.I276I	NM_020877	NP_065928	Q9P225	DYH2_HUMAN	dynein heavy chain domain 3	3338					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(6)|skin(6)|central_nervous_system(1)	13		all_cancers(10;4.66e-07)|Prostate(122;0.081)				AAATCTGGATCGGGAAGGTGA	0.577													39	50					0	0	1	0	0
KDM6B	23135	broad.mit.edu	37	17	7749407	7749407	+	Missense_Mutation	SNP	C	T	T	rs141369717	byFrequency	TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr17:7749407C>T	uc002giw.1	+	6	624	c.248C>T	c.(247-249)CCA>CTA	p.P83L	KDM6B_uc002gix.2_5'Flank	NM_001080424	NP_001073893	O15054	KDM6B_HUMAN	lysine (K)-specific demethylase 6B	83	Pro-rich.				inflammatory response	nucleus	metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			central_nervous_system(1)|pancreas(1)	2						GCGCCCACTCCAAGACCCCTC	0.637													7	16					0	0	1	0	0
GUCY2D	3000	broad.mit.edu	37	17	7917254	7917254	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr17:7917254G>A	uc002gjt.2	+	12	2394	c.2320G>A	c.(2320-2322)GAC>AAC	p.D774N		NM_000180	NP_000171	Q02846	GUC2D_HUMAN	guanylate cyclase 2D, membrane (retina-specific)	774	Protein kinase.|Cytoplasmic (Potential).				intracellular signal transduction|receptor guanylyl cyclase signaling pathway|visual perception	integral to plasma membrane|nuclear outer membrane	ATP binding|GTP binding|guanylate cyclase activity|protein kinase activity|receptor activity			skin(1)	1		Prostate(122;0.157)				GGTGTCCATGGACCAGGCACC	0.642													54	72					0	0	1	0	0
MYH1	4619	broad.mit.edu	37	17	10400457	10400457	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr17:10400457C>T	uc002gmo.2	-	33	4679	c.4585G>A	c.(4585-4587)GAA>AAA	p.E1529K	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	1529	Potential.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						TTTTCCAGTTCATGGATGCGC	0.373													11	16					0	0	1	0	0
MYH1	4619	broad.mit.edu	37	17	10401105	10401105	+	Silent	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr17:10401105C>T	uc002gmo.2	-	31	4405	c.4311G>A	c.(4309-4311)GAG>GAA	p.E1437E	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	1437	Potential.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						CATTTGTCCTCTCAACATCAA	0.438													43	81					0	0	1	0	0
RICH2	9912	broad.mit.edu	37	17	12877444	12877444	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr17:12877444G>A	uc002gnr.3	+	18	1907	c.1580G>A	c.(1579-1581)CGA>CAA	p.R527Q	RICH2_uc010vvk.1_Missense_Mutation_p.R527Q|RICH2_uc010vvl.1_Missense_Mutation_p.R521Q|RICH2_uc002gns.3_Missense_Mutation_p.R321Q|RICH2_uc010vvm.1_Missense_Mutation_p.R521Q|RICH2_uc010vvn.1_Intron	NM_014859	NP_055674	Q17R89	RHG44_HUMAN	Rho GTPase-activating protein RICH2	527					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity				0						TGGGTGGCTCGAAGAGGCTCC	0.677													4	7					0	0	1	0	0
EVPLL	645027	broad.mit.edu	37	17	18286458	18286458	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr17:18286458G>A	uc002gte.2	+	7	886	c.631G>A	c.(631-633)GAC>AAC	p.D211N		NM_001145127	NP_001138599	A8MZ36	EVPLL_HUMAN	envoplakin-like	211											0						GGACTGGAGCGACCTCATGGC	0.721													3	5					0	0	1	0	0
NOS2	4843	broad.mit.edu	37	17	26114749	26114749	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr17:26114749G>A	uc002gzu.2	-	5	686	c.422C>T	c.(421-423)CCT>CTT	p.P141L	NOS2_uc010crh.1_Missense_Mutation_p.P141L|NOS2_uc010wab.1_Missense_Mutation_p.P141L	NM_000625	NP_000616	P35228	NOS2_HUMAN	nitric oxide synthase 2A	141					arginine catabolic process|defense response to Gram-negative bacterium|innate immune response in mucosa|nitric oxide biosynthetic process|peptidyl-cysteine S-nitrosylation|platelet activation|positive regulation of killing of cells of other organism|positive regulation of leukocyte mediated cytotoxicity|regulation of cellular respiration|regulation of insulin secretion|superoxide metabolic process	cytosol|nucleus	arginine binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|protein homodimerization activity|tetrahydrobiopterin binding			skin(2)|ovary(1)|breast(1)	4					Dexamethasone(DB01234)|Hydrocortisone(DB00741)|L-Arginine(DB00125)|L-Citrulline(DB00155)	GATAGCTTGAGGTAGAAGCTC	0.522													48	80					0	0	1	0	0
NEK8	284086	broad.mit.edu	37	17	27065145	27065145	+	Silent	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr17:27065145C>T	uc002hcp.2	+	8	1104	c.1104C>T	c.(1102-1104)CTC>CTT	p.L368L		NM_178170	NP_835464	Q86SG6	NEK8_HUMAN	NIMA-related kinase 8	368						cytoplasm|primary cilium	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			stomach(2)|ovary(1)|pancreas(1)|liver(1)|skin(1)	6	Lung NSC(42;0.0158)					GAGGCAGTCTCCTTCCTGGGG	0.672													6	8					0	0	1	0	0
SUZ12	23512	broad.mit.edu	37	17	30325845	30325845	+	Silent	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr17:30325845C>T	uc002hgs.2	+	16	2265	c.2043C>T	c.(2041-2043)CTC>CTT	p.L681L	SUZ12_uc002hgt.2_Silent_p.L658L	NM_015355	NP_056170	Q15022	SUZ12_HUMAN	joined to JAZF1	681					negative regulation of cell differentiation|transcription, DNA-dependent	ESC/E(Z) complex	histone methyltransferase activity|methylated histone residue binding|zinc ion binding		JAZF1/SUZ12(131)	soft_tissue(98)|endometrium(33)	131		Myeloproliferative disorder(56;0.0255)|all_hematologic(16;0.041)|Ovarian(249;0.182)|Breast(31;0.231)				TTACCAAGCTCCGTGAAATGC	0.358			T	JAZF1	endometrial stromal tumours								15	17					0	0	1	0	0
FNDC8	54752	broad.mit.edu	37	17	33448814	33448814	+	Silent	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr17:33448814C>T	uc002hix.2	+	1	184	c.102C>T	c.(100-102)CCC>CCT	p.P34P	RFFL_uc002hiq.2_5'Flank|RAD51L3_uc002hir.2_5'Flank|RAD51L3_uc010wcd.1_5'Flank|RAD51L3_uc002his.2_5'Flank|RAD51L3_uc010ctk.2_5'Flank|RAD51L3_uc010wce.1_5'Flank|RAD51L3_uc002hit.2_5'Flank|RAD51L3_uc002hiu.2_5'Flank|RAD51L3_uc010wcf.1_5'Flank|RAD51L3_uc002hiw.1_5'Flank|RAD51L3_uc002hiv.1_5'Flank|RAD51L3_uc010ctl.1_5'Flank|RAD51L3_uc010ctm.1_5'Flank	NM_017559	NP_060029	Q8TC99	FNDC8_HUMAN	fibronectin type III domain containing 8	34										ovary(2)	2		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.022)		TGCCAAAACCCTTTTCAAACC	0.483													44	53					0	0	1	0	0
GAS2L2	246176	broad.mit.edu	37	17	34071983	34071983	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr17:34071983C>T	uc002hjv.1	-	6	2561	c.2533G>A	c.(2533-2535)GAG>AAG	p.E845K		NM_139285	NP_644814	Q8NHY3	GA2L2_HUMAN	growth arrest-specific 2 like 2	845					cell cycle arrest	cytoplasm|cytoskeleton				ovary(1)|skin(1)	2		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		GGctctttctcctcctttcct	0.512													16	22					0	0	1	0	0
KRT39	390792	broad.mit.edu	37	17	39118534	39118534	+	Silent	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr17:39118534C>T	uc002hvo.1	-	5	912	c.876G>A	c.(874-876)GAG>GAA	p.E292E	KRT39_uc010wfm.1_Silent_p.E25E	NM_213656	NP_998821	Q6A163	K1C39_HUMAN	type I hair keratin KA35	292	Coil 2.|Rod.					intermediate filament	structural molecule activity				0		Breast(137;0.00043)|Ovarian(249;0.15)				GATTCAGCTCCTCTATCTGAA	0.443													48	100					0	0	1	0	0
KRT31	3881	broad.mit.edu	37	17	39552737	39552737	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr17:39552737C>T	uc002hwn.2	-	3	576	c.523G>A	c.(523-525)GAC>AAC	p.D175N	KRT31_uc010cxn.2_Missense_Mutation_p.D175N	NM_002277	NP_002268	Q15323	K1H1_HUMAN	keratin 31	175	Rod.|Coil 1B.				epidermis development	intermediate filament	protein binding|structural constituent of cytoskeleton				0		Breast(137;0.000496)				GCCTCCAGGTCGGACTTGCAC	0.587													51	53					0	0	1	0	0
KRT15	3866	broad.mit.edu	37	17	39670283	39670283	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr17:39670283C>T	uc002hwy.2	-	8	1554	c.1363G>A	c.(1363-1365)GAA>AAA	p.E455K	KRT15_uc002hwz.2_Missense_Mutation_p.E357K|KRT15_uc002hxa.2_Missense_Mutation_p.E290K|KRT15_uc002hxb.1_3'UTR	NM_002275	NP_002266	P19012	K1C15_HUMAN	keratin 15	455	Tail.				epidermis development	intermediate filament	protein binding|structural constituent of cytoskeleton				0		Breast(137;0.000286)				ACTTAGATTTCTCTCTTGTGG	0.517													47	61					0	0	1	0	0
ACLY	47	broad.mit.edu	37	17	40043946	40043946	+	Missense_Mutation	SNP	A	C	C			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr17:40043946A>C	uc002hyg.2	-	17	1944	c.1781T>G	c.(1780-1782)ATC>AGC	p.I594S	ACLY_uc002hyh.2_Missense_Mutation_p.I584S|ACLY_uc002hyi.2_Missense_Mutation_p.I648S|ACLY_uc010wfx.1_Missense_Mutation_p.I638S|ACLY_uc010wfy.1_Missense_Mutation_p.I323S	NM_001096	NP_001087	P53396	ACLY_HUMAN	ATP citrate lyase isoform 1	594					ATP catabolic process|cellular carbohydrate metabolic process|citrate metabolic process|coenzyme A metabolic process|energy reserve metabolic process|long-chain fatty-acyl-CoA biosynthetic process|positive regulation of cellular metabolic process|triglyceride biosynthetic process	citrate lyase complex|cytosol|nucleus	ATP binding|ATP citrate synthase activity|citrate (pro-3S)-lyase activity|metal ion binding|protein binding|succinate-CoA ligase (ADP-forming) activity			ovary(2)|central_nervous_system(1)	3		Breast(137;0.000143)				TATGATGGCGATGGTCCGGAT	0.547													21	34					0	0	1	0	0
WNK4	65266	broad.mit.edu	37	17	40937126	40937126	+	Silent	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr17:40937126G>A	uc002ibj.2	+	5	1203	c.1182G>A	c.(1180-1182)CCG>CCA	p.P394P	WNK4_uc010wgx.1_Intron|WNK4_uc002ibk.1_Silent_p.P166P|WNK4_uc010wgy.1_5'Flank	NM_032387	NP_115763	Q96J92	WNK4_HUMAN	WNK lysine deficient protein kinase 4	394	Protein kinase.				intracellular protein kinase cascade	tight junction	ATP binding|protein serine/threonine kinase activity			ovary(3)|skin(3)|stomach(1)	7		Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.0749)		GCAGAAAGCCGAACAGCTTCC	0.592													8	15					0	0	1	0	0
NBR1	4077	broad.mit.edu	37	17	41345501	41345501	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr17:41345501C>T	uc010czd.2	+	12	1510	c.1370C>T	c.(1369-1371)TCC>TTC	p.S457F	NBR1_uc010diz.2_Missense_Mutation_p.S457F|NBR1_uc010whu.1_Missense_Mutation_p.S457F|NBR1_uc010whv.1_Missense_Mutation_p.S457F|NBR1_uc010whw.1_Missense_Mutation_p.S436F|NBR1_uc010whx.1_Missense_Mutation_p.S266F	NM_031862	NP_114068	Q14596	NBR1_HUMAN	neighbor of BRCA1 gene 1	457					macroautophagy|protein oligomerization	autophagic vacuole|cytoplasmic vesicle|cytosol|late endosome|lysosome|sarcomere	ubiquitin binding|zinc ion binding			skin(1)	1		Breast(137;0.00086)		BRCA - Breast invasive adenocarcinoma(366;0.0934)		ACGTATACTTCCCATTGGCGT	0.512													9	13					0	0	1	0	0
SOST	50964	broad.mit.edu	37	17	41832725	41832725	+	Silent	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr17:41832725C>T	uc002iec.1	-	2	674	c.627G>A	c.(625-627)CTG>CTA	p.L209L		NM_025237	NP_079513	Q9BQB4	SOST_HUMAN	sclerostin precursor	209					negative regulation of BMP signaling pathway|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of ossification|negative regulation of protein complex assembly|negative regulation of Wnt receptor signaling pathway involved in dorsal/ventral axis specification|Wnt receptor signaling pathway		heparin binding|protein binding				0		Breast(137;0.00725)		UCEC - Uterine corpus endometrioid carcinoma (308;0.177)|BRCA - Breast invasive adenocarcinoma(366;0.0741)		AGGCGTTCTCCAGCTCGGCCT	0.537													15	19					0	0	1	0	0
CCDC43	124808	broad.mit.edu	37	17	42759406	42759406	+	Silent	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr17:42759406G>A	uc002ihc.2	-	3	437	c.393C>T	c.(391-393)CTC>CTT	p.L131L	CCDC43_uc010czw.1_Silent_p.L131L	NM_144609	NP_653210	Q96MW1	CCD43_HUMAN	coiled-coil domain containing 43 isoform 1	131	Potential.										0		Prostate(33;0.0322)				ACTGGGCCAGGAGGGCAGCTT	0.478													54	92					0	0	1	0	0
GJC1	10052	broad.mit.edu	37	17	42882577	42882577	+	Silent	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr17:42882577G>A	uc002ihj.2	-	2	1120	c.609C>T	c.(607-609)GTC>GTT	p.V203V	GJC1_uc002ihk.2_Silent_p.V203V|GJC1_uc002ihl.2_Silent_p.V203V|GJC1_uc010czx.2_Silent_p.V203V|GJC1_uc010czy.1_Silent_p.V64V	NM_005497	NP_005488	P36383	CXG1_HUMAN	connexin 45	203	Extracellular (Potential).				cellular membrane organization|gap junction assembly|muscle contraction|synaptic transmission|transport	connexon complex|integral to membrane					0		Prostate(33;0.0959)				AAAACGGGTGGACTTGGAAGC	0.438													56	59					0	0	1	0	0
SGCA	6442	broad.mit.edu	37	17	48245837	48245837	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr17:48245837G>A	uc002iqi.2	+	5	524	c.488G>A	c.(487-489)GGA>GAA	p.G163E	SGCA_uc010wmh.1_Missense_Mutation_p.G61E|SGCA_uc002iqj.2_Missense_Mutation_p.G163E|SGCA_uc010wmi.1_RNA|uc010dbn.1_5'Flank	NM_000023	NP_000014	Q16586	SGCA_HUMAN	sarcoglycan, alpha isoform 1 precursor	163	Extracellular (Potential).				muscle contraction|muscle organ development	cytoplasm|cytoskeleton|integral to membrane|sarcoglycan complex|sarcolemma	calcium ion binding			ovary(2)	2						GCCTTGGGGGGACTCTGGGAG	0.652													3	1					0	0	1	0	0
ABCC3	8714	broad.mit.edu	37	17	48741464	48741464	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr17:48741464C>T	uc002isl.2	+	10	1410	c.1330C>T	c.(1330-1332)CTC>TTC	p.L444F	ABCC3_uc002isk.3_Missense_Mutation_p.L444F|ABCC3_uc002ism.2_Missense_Mutation_p.P156L	NM_003786	NP_003777	O15438	MRP3_HUMAN	ATP-binding cassette, sub-family C, member 3	444	ABC transmembrane type-1 1.|Helical; Name=8; (By similarity).				bile acid metabolic process	integral to plasma membrane|membrane fraction	ATP binding|bile acid-exporting ATPase activity|organic anion transmembrane transporter activity			skin(3)|central_nervous_system(1)	4			BRCA - Breast invasive adenocarcinoma(22;3.05e-09)		Glibenclamide(DB01016)	GATCTACTTCCTCTGGCAGGT	0.537													63	71					0	0	1	0	0
C17orf71	55181	broad.mit.edu	37	17	57287876	57287876	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr17:57287876C>T	uc002ixi.2	+	1	506	c.464C>T	c.(463-465)TCC>TTC	p.S155F		NM_018149	NP_060619	Q8ND04	SMG8_HUMAN	SMG8 protein	155					nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|regulation of protein kinase activity		protein binding				0	all_neural(34;0.0837)|Medulloblastoma(34;0.0922)					CTCCTCACCTCCATCTGTGAC	0.547													10	23					0	0	1	0	0
SCN4A	6329	broad.mit.edu	37	17	62019286	62019286	+	Silent	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr17:62019286C>T	uc002jds.1	-	24	4433	c.4356G>A	c.(4354-4356)CTG>CTA	p.L1452L		NM_000334	NP_000325	P35499	SCN4A_HUMAN	voltage-gated sodium channel type 4 alpha	1452	Helical; Voltage-sensor; Name=S4 of repeat IV; (Potential).|IV.				muscle contraction	voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(1)|pancreas(1)|skin(1)	3					Lamotrigine(DB00555)	CAATCCGCGCCAGGCGGATCA	0.637													16	24					0	0	1	0	0
ABCA8	10351	broad.mit.edu	37	17	66925201	66925201	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr17:66925201C>T	uc002jhp.2	-	8	1293	c.1114G>A	c.(1114-1116)GGA>AGA	p.G372R	ABCA8_uc002jhq.2_Missense_Mutation_p.G372R|ABCA8_uc010wqq.1_Missense_Mutation_p.G372R|ABCA8_uc010wqr.1_Missense_Mutation_p.G311R|ABCA8_uc002jhr.2_Missense_Mutation_p.G372R	NM_007168	NP_009099	O94911	ABCA8_HUMAN	ATP-binding cassette, sub-family A member 8	372	Helical; (Potential).					integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(2)|skin(1)	3	Breast(10;4.56e-13)					TGGGCCATTCCAAGCATGAAG	0.458													24	43					0	0	1	0	0
KCNJ2	3759	broad.mit.edu	37	17	68171981	68171981	+	Silent	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr17:68171981C>T	uc010dfg.2	+	2	1202	c.801C>T	c.(799-801)ATC>ATT	p.I267I	KCNJ2_uc002jir.2_Silent_p.I267I	NM_000891	NP_000882	P63252	IRK2_HUMAN	potassium inwardly-rectifying channel J2	267	Cytoplasmic (By similarity).				synaptic transmission	integral to plasma membrane	inward rectifier potassium channel activity|protein binding				0	Breast(10;1.64e-08)					TGTCCCCAATCACTATAGTCC	0.403													25	37					0	0	1	0	0
TNRC6C	57690	broad.mit.edu	37	17	76089202	76089202	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr17:76089202C>T	uc002jud.2	+	16	4759	c.4159C>T	c.(4159-4161)CCA>TCA	p.P1387S	TNRC6C_uc002juf.2_Missense_Mutation_p.P1384S	NM_018996	NP_061869	Q9HCJ0	TNR6C_HUMAN	trinucleotide repeat containing 6C isoform 2	1387	Sufficient for translational repression when tethered to a target mRNA.				gene silencing by RNA|regulation of translation		nucleotide binding|RNA binding			ovary(1)|central_nervous_system(1)	2			BRCA - Breast invasive adenocarcinoma(99;0.00269)|Lung(188;0.0973)			CAACTGGCCCCCAGGTAAGAC	0.522													8	22					0	0	1	0	0
DNAH17	8632	broad.mit.edu	37	17	76557901	76557901	+	Silent	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr17:76557901C>T	uc002jvv.1	-	8	943	c.837G>A	c.(835-837)CTG>CTA	p.L279L						RecName: Full=Dynein heavy chain 17, axonemal; AltName: Full=Axonemal beta dynein heavy chain 17; AltName: Full=Ciliary dynein heavy chain 17; AltName: Full=Ciliary dynein heavy chain-like protein 1; AltName: Full=Axonemal dynein heavy chain-like protein 1; AltName: Full=Dynein light chain 2, axonemal;											ovary(6)|breast(2)|skin(1)	9			BRCA - Breast invasive adenocarcinoma(99;0.00294)|OV - Ovarian serous cystadenocarcinoma(97;0.0656)			TTTTGTGGATCAGGGGGATGT	0.562													5	19					0	0	1	0	0
TEX19	400629	broad.mit.edu	37	17	80320315	80320315	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr17:80320315G>A	uc002keq.2	+	2	598	c.289G>A	c.(289-291)GCA>ACA	p.A97T		NM_207459	NP_997342	Q8NA77	TEX19_HUMAN	testis expressed 19	97						nucleus					0						GGGCTCTGAGGCATGGGGGCC	0.647													33	33					0	0	1	0	0
MRO	83876	broad.mit.edu	37	18	48327755	48327755	+	Silent	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr18:48327755C>T	uc002lew.3	-	6	843	c.549G>A	c.(547-549)CTG>CTA	p.L183L	MRO_uc010xdn.1_Intron|MRO_uc010dpa.2_Silent_p.L197L|MRO_uc010dpb.2_Intron|MRO_uc010dpc.2_Intron|MRO_uc002lex.3_Silent_p.L183L	NM_031939	NP_114145	Q9BYG7	MSTRO_HUMAN	maestro isoform a	183						nucleolus	binding				0		Colorectal(6;0.0596)		Colorectal(21;0.082)		GTAAATGGATCAGGAGGGAAT	0.468													140	17					0	0	1	0	0
ALPK2	115701	broad.mit.edu	37	18	56205006	56205006	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr18:56205006C>T	uc002lhj.3	-	5	2627	c.2413G>A	c.(2413-2415)GAG>AAG	p.E805K	ALPK2_uc002lhk.1_Missense_Mutation_p.E136K	NM_052947	NP_443179	Q86TB3	ALPK2_HUMAN	heart alpha-kinase	805							ATP binding|protein serine/threonine kinase activity			ovary(7)|skin(5)|lung(1)|central_nervous_system(1)	14						TCAAAACACTCCATTGCACAC	0.473													43	7					0	0	1	0	0
SEC11C	90701	broad.mit.edu	37	18	56819810	56819810	+	Silent	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr18:56819810C>T	uc002lht.2	+	3	296	c.240C>T	c.(238-240)TTC>TTT	p.F80F	SEC11C_uc010dpo.1_Silent_p.F80F|SEC11C_uc010xej.1_Silent_p.F80F	NM_033280	NP_150596	Q9BY50	SC11C_HUMAN	SEC11-like 3	80	Lumenal (Potential).				energy reserve metabolic process|regulation of insulin secretion|signal peptide processing	endoplasmic reticulum membrane|integral to membrane|microsome	serine-type peptidase activity				0		Colorectal(73;0.175)				ACCTCCTGTTCCTCACAAATT	0.448													164	31					0	0	1	0	0
PCSK4	54760	broad.mit.edu	37	19	1487294	1487294	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr19:1487294C>T	uc002ltb.1	-	7	763	c.701G>A	c.(700-702)GGT>GAT	p.G234D	PCSK4_uc002lta.2_Missense_Mutation_p.G46D	NM_017573	NP_060043	Q6UW60	PCSK4_HUMAN	proprotein convertase subtilisin/kexin type 4	234	Catalytic (By similarity).				proteolysis	integral to membrane	serine-type endopeptidase activity				0		Acute lymphoblastic leukemia(61;3.02e-13)|all_hematologic(61;4.32e-09)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GGTGATGGTACCGTCCAGCAT	0.527													5	12					0	0	1	0	0
MRPL54	116541	broad.mit.edu	37	19	3762731	3762731	+	Silent	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr19:3762731G>A	uc002lyq.3	+	1	67	c.33G>A	c.(31-33)CGG>CGA	p.R11R	APBA3_uc002lyp.1_5'Flank	NM_172251	NP_758455	Q6P161	RM54_HUMAN	mitochondrial ribosomal protein L54 precursor	11						mitochondrion|ribosome					0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00467)|STAD - Stomach adenocarcinoma(1328;0.18)		GGGCTACCCGGACGTGGGCCG	0.622													31	37					0	0	1	0	0
FSD1	79187	broad.mit.edu	37	19	4306272	4306272	+	Missense_Mutation	SNP	A	C	C			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr19:4306272A>C	uc002lzy.2	+	3	342	c.189A>C	c.(187-189)GAA>GAC	p.E63D	FSD1_uc010xie.1_Missense_Mutation_p.E50D|FSD1_uc010xif.1_Silent_p.R47R|FSD1_uc002lzz.2_Missense_Mutation_p.E63D	NM_024333	NP_077309	Q9BTV5	FSD1_HUMAN	fibronectin type III and SPRY domain containing	63	Potential.				cell division|mitosis	cleavage furrow|microtubule|microtubule organizing center|nucleus				skin(1)	1				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.034)|STAD - Stomach adenocarcinoma(1328;0.18)		AGCTGAAAGAAGGCATGCTTA	0.592													44	59					0	0	1	0	0
HDGFRP2	84717	broad.mit.edu	37	19	4491608	4491608	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr19:4491608C>T	uc002mao.2	+	5	628	c.535C>T	c.(535-537)CAG>TAG	p.Q179*	HDGFRP2_uc002map.2_Nonsense_Mutation_p.Q179*|HDGFRP2_uc010dtz.1_RNA	NM_001001520	NP_001001520	Q7Z4V5	HDGR2_HUMAN	hepatoma-derived growth factor-related protein 2	179	Ser-rich.				transcription, DNA-dependent	nucleus	DNA binding|protein binding				0						CGACCTGGATCAGGCCAGCGT	0.627													28	35					0	0	1	0	0
INSR	3643	broad.mit.edu	37	19	7174618	7174618	+	Silent	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr19:7174618G>A	uc002mgd.1	-	4	1208	c.1099C>T	c.(1099-1101)CTG>TTG	p.L367L	INSR_uc002mge.1_Silent_p.L367L|INSR_uc002mgf.2_Silent_p.L367L	NM_000208	NP_000199	P06213	INSR_HUMAN	insulin receptor isoform Long precursor	367					activation of MAPK activity|activation of protein kinase B activity|carbohydrate metabolic process|fibroblast growth factor receptor signaling pathway|G-protein coupled receptor protein signaling pathway|glucose homeostasis|heart morphogenesis|peptidyl-tyrosine phosphorylation|positive regulation of cell migration|positive regulation of cell proliferation|positive regulation of developmental growth|positive regulation of DNA replication|positive regulation of glucose import|positive regulation of glycogen biosynthetic process|positive regulation of glycolysis|positive regulation of MAPKKK cascade|positive regulation of mitosis|positive regulation of nitric oxide biosynthetic process|positive regulation of protein kinase B signaling cascade|positive regulation of protein phosphorylation|positive regulation of respiratory burst|protein autophosphorylation|protein heterotetramerization|regulation of embryonic development|regulation of transcription, DNA-dependent|transformation of host cell by virus	caveola|endosome membrane|insulin receptor complex|microsome	ATP binding|GTP binding|insulin binding|insulin receptor activity|insulin receptor substrate binding|insulin-like growth factor I binding|insulin-like growth factor II binding|insulin-like growth factor receptor binding|metal ion binding|phosphatidylinositol 3-kinase binding|PTB domain binding|receptor signaling protein tyrosine kinase activity|SH2 domain binding			ovary(4)|lung(3)|central_nervous_system(2)|large_intestine(1)|stomach(1)|skin(1)	12					Insulin Glargine recombinant(DB00047)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	TTGATGATCAGACTCCCGTTG	0.597													53	63					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9049537	9049537	+	Silent	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr19:9049537G>A	uc002mkp.2	-	5	32298	c.32094C>T	c.(32092-32094)ATC>ATT	p.I10698I		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	10700	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AAAAATTGGGGATTGTTCTGG	0.468													83	105					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9064721	9064721	+	Silent	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr19:9064721G>A	uc002mkp.2	-	3	22929	c.22725C>T	c.(22723-22725)TCC>TCT	p.S7575S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	7577	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CTTCTGTCCTGGAGACCTCAG	0.502													48	81					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9066184	9066184	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr19:9066184G>A	uc002mkp.2	-	3	21466	c.21262C>T	c.(21262-21264)CCC>TCC	p.P7088S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	7090	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TCCAGAGAGGGAGAGCTTTGC	0.502													26	32					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9066520	9066520	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr19:9066520G>A	uc002mkp.2	-	3	21130	c.20926C>T	c.(20926-20928)CCC>TCC	p.P6976S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	6978	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GTACCAGTGGGGACTTCTGAA	0.483													51	56					0	0	1	0	0
ZGLP1	100125288	broad.mit.edu	37	19	10419147	10419147	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr19:10419147G>A	uc002mnw.3	-	1	1087	c.211C>T	c.(211-213)CCT>TCT	p.P71S	FDX1L_uc002mnx.1_Intron	NM_001103167	NP_001096637	P0C6A0	ZGLP1_HUMAN	GATA like protein-1	71					multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1						TCCTGGGCAGGGGACTGACCC	0.672													9	7					0	0	1	0	0
ZNF443	10224	broad.mit.edu	37	19	12541141	12541141	+	Silent	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr19:12541141C>T	uc002mtu.2	-	4	2043	c.1845G>A	c.(1843-1845)CCG>CCA	p.P615P		NM_005815	NP_005806	Q9Y2A4	ZN443_HUMAN	zinc finger protein 443	615					induction of apoptosis|regulation of transcription, DNA-dependent|response to stress|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(1)	1						TACATTCATACGGGTTCTCTC	0.403													4	36					0	0	1	0	0
CD97	976	broad.mit.edu	37	19	14513431	14513431	+	Silent	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr19:14513431C>T	uc002myl.2	+	12	1329	c.1206C>T	c.(1204-1206)CTC>CTT	p.L402L	CD97_uc002mym.2_Silent_p.L353L|CD97_uc002myn.2_Silent_p.L309L	NM_078481	NP_510966	P48960	CD97_HUMAN	CD97 antigen isoform 1 precursor	402	Extracellular (Potential).				cell adhesion|cell-cell signaling|cellular component movement|immune response|inflammatory response|neuropeptide signaling pathway	extracellular space|integral to plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(3)|breast(1)	4						CGGGCATCCTCTCCATCCAGA	0.577													56	76					0	0	1	0	0
CASP14	23581	broad.mit.edu	37	19	15164655	15164655	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr19:15164655G>A	uc010dzv.1	+	4	597	c.289G>A	c.(289-291)GGA>AGA	p.G97R	CASP14_uc002naf.2_Missense_Mutation_p.G97R	NM_012114	NP_036246	P31944	CASPE_HUMAN	caspase 14 precursor	97					apoptosis|cell differentiation|epidermis development|proteolysis	cytoplasm|nucleus	cysteine-type endopeptidase activity			skin(2)|ovary(1)|lung(1)	4						CTTCCTCAAGGGAGAAGATGG	0.547													42	78					0	0	1	0	0
OR10H3	26532	broad.mit.edu	37	19	15852266	15852266	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr19:15852266C>T	uc010xoq.1	+	1	64	c.64C>T	c.(64-66)CAG>TAG	p.Q22*		NM_013938	NP_039226	O60404	O10H3_HUMAN	olfactory receptor, family 10, subfamily H,	22	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						AGCCTTCCCCCAGCAGCTCCT	0.468													100	134					0	0	1	0	0
NWD1	284434	broad.mit.edu	37	19	16875922	16875922	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr19:16875922C>T	uc002neu.3	+	10	2751	c.2329C>T	c.(2329-2331)CCT>TCT	p.P777S	NWD1_uc002net.3_Missense_Mutation_p.P642S|NWD1_uc002nev.3_Missense_Mutation_p.P571S			Q149M9	NWD1_HUMAN	RecName: Full=NACHT and WD repeat domain-containing protein 1;	777							ATP binding			skin(3)|ovary(2)|pancreas(2)	7						CCTGTGTGCCCCTCACCTGGA	0.637													25	41					0	0	1	0	0
CPAMD8	27151	broad.mit.edu	37	19	17081811	17081811	+	Silent	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr19:17081811C>T	uc002nfb.2	-	18	2276	c.2244G>A	c.(2242-2244)GTG>GTA	p.V748V		NM_015692	NP_056507	Q8IZJ3	CPMD8_HUMAN	C3 and PZP-like, alpha-2-macroglobulin domain	701						extracellular space|plasma membrane	serine-type endopeptidase inhibitor activity			ovary(4)|breast(4)|large_intestine(3)|pancreas(1)|skin(1)	13						GGTTCAGGCTCACTCGGTCGG	0.617													35	58					0	0	1	0	0
ZNF208	7757	broad.mit.edu	37	19	22155896	22155896	+	Missense_Mutation	SNP	A	C	C			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr19:22155896A>C	uc002nqp.2	-	5	1789	c.1640T>G	c.(1639-1641)ATT>AGT	p.I547S	ZNF208_uc002nqo.1_Intron	NM_007153	NP_009084			zinc finger protein 208											ovary(5)|skin(2)	7		all_lung(12;0.0961)|Lung NSC(12;0.103)				TGAGACCTTAATAAAGGTTTT	0.398													5	76					0	0	1	0	0
ZNF208	7757	broad.mit.edu	37	19	22156530	22156530	+	Missense_Mutation	SNP	A	G	G			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr19:22156530A>G	uc002nqp.2	-	4	1455	c.1306T>C	c.(1306-1308)TGG>CGG	p.W436R	ZNF208_uc002nqo.1_Intron|ZNF208_uc010ecw.1_5'Flank	NM_007153	NP_009084			zinc finger protein 208											ovary(5)|skin(2)	7		all_lung(12;0.0961)|Lung NSC(12;0.103)				TTTGAGGACCAGTTGAAAGCT	0.388													3	87					0	0	1	0	0
ZNF676	163223	broad.mit.edu	37	19	22364058	22364058	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr19:22364058G>A	uc002nqs.1	-	3	779	c.461C>T	c.(460-462)TCA>TTA	p.S154L		NM_001001411	NP_001001411	Q8N7Q3	ZN676_HUMAN	zinc finger protein 676	154					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.114)				AGATAGGTGTGAAAGCATGCA	0.323													20	26					0	0	1	0	0
FFAR3	2865	broad.mit.edu	37	19	35849900	35849900	+	Silent	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr19:35849900G>A	uc002nzd.2	+	2	183	c.108G>A	c.(106-108)CTG>CTA	p.L36L	FFAR3_uc010xsu.1_RNA	NM_005304	NP_005295	O14843	FFAR3_HUMAN	free fatty acid receptor 3	36	Helical; Name=1; (Potential).					integral to plasma membrane	G-protein coupled receptor activity|lipid binding				0	all_lung(56;9.78e-09)|Lung NSC(56;1.46e-08)|Esophageal squamous(110;0.162)		Epithelial(14;1.29e-19)|OV - Ovarian serous cystadenocarcinoma(14;4.63e-18)|all cancers(14;5.19e-17)|LUSC - Lung squamous cell carcinoma(66;0.0221)			TGCTGGCCCTGGTGGTCTTCG	0.647													49	169					0	0	1	0	0
FFAR3	2865	broad.mit.edu	37	19	35849945	35849945	+	Silent	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr19:35849945C>T	uc002nzd.2	+	2	228	c.153C>T	c.(151-153)GAC>GAT	p.D51D	FFAR3_uc010xsu.1_RNA	NM_005304	NP_005295	O14843	FFAR3_HUMAN	free fatty acid receptor 3	51	Helical; Name=2; (Potential).					integral to plasma membrane	G-protein coupled receptor activity|lipid binding				0	all_lung(56;9.78e-09)|Lung NSC(56;1.46e-08)|Esophageal squamous(110;0.162)		Epithelial(14;1.29e-19)|OV - Ovarian serous cystadenocarcinoma(14;4.63e-18)|all cancers(14;5.19e-17)|LUSC - Lung squamous cell carcinoma(66;0.0221)			TGGCCGTGGACGTGCTCCTGC	0.662													51	185					0	0	1	0	0
GGN	199720	broad.mit.edu	37	19	38876802	38876802	+	Missense_Mutation	SNP	T	C	C			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr19:38876802T>C	uc002oij.1	-	3	1235	c.1100A>G	c.(1099-1101)AAC>AGC	p.N367S	GGN_uc002oik.1_Intron|GGN_uc010efy.1_Missense_Mutation_p.N284S	NM_152657	NP_689870	Q86UU5	GGN_HUMAN	gametogenetin	367	Interaction with GGNBP1 (By similarity).|Pro-rich.				cell differentiation|multicellular organismal development|spermatogenesis						0	all_cancers(60;3.4e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)			GCCAGCCCCGTTGAAGCGGAA	0.697													4	4					0	0	1	0	0
FCGBP	8857	broad.mit.edu	37	19	40362865	40362865	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr19:40362865G>A	uc002omp.3	-	32	15213	c.15205C>T	c.(15205-15207)CCC>TCC	p.P5069S		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	5069						extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			TACTCAGAGGGACTCAGCACC	0.647													77	119					0	0	1	0	0
CYP2F1	1572	broad.mit.edu	37	19	41622449	41622449	+	Silent	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr19:41622449C>T	uc002opu.1	+	3	317	c.261C>T	c.(259-261)GCC>GCT	p.A87A	CYP2F1_uc010xvw.1_5'UTR|CYP2F1_uc010xvv.1_Silent_p.A87A|CYP2F1_uc002opv.1_RNA	NM_000774	NP_000765	P24903	CP2F1_HUMAN	cytochrome P450, family 2, subfamily F,	87					naphthalene metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding				0						TGAAGGAGGCCCTGGTGGACC	0.592													22	44					0	0	1	0	0
PSG2	5670	broad.mit.edu	37	19	43575870	43575870	+	Missense_Mutation	SNP	A	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr19:43575870A>T	uc002ovr.2	-	4	1039	c.946T>A	c.(946-948)TTG>ATG	p.L316M	PSG6_uc002ovi.2_Intron|PSG6_uc010xwk.1_Intron|PSG2_uc002ovq.3_Missense_Mutation_p.L316M|PSG2_uc010eiq.1_Missense_Mutation_p.L316M|PSG2_uc002ovs.3_Missense_Mutation_p.L316M|PSG2_uc002ovt.3_Missense_Mutation_p.L316M	NM_031246	NP_112536	P11465	PSG2_HUMAN	pregnancy specific beta-1-glycoprotein 2	316	Ig-like C2-type 2.				cell migration|female pregnancy	extracellular region					0		Prostate(69;0.00682)				TTGACTGTCAACGATGTGGAG	0.458													126	187					0	0	1	0	0
ZNF229	7772	broad.mit.edu	37	19	44934301	44934301	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr19:44934301C>T	uc002oze.1	-	6	1089	c.655G>A	c.(655-657)GAT>AAT	p.D219N	ZNF229_uc010ejk.1_5'UTR|ZNF229_uc010ejl.1_Missense_Mutation_p.D213N	NM_014518	NP_055333	Q9UJW7	ZN229_HUMAN	zinc finger protein 229	219					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)|ovary(1)|pancreas(1)	4		Prostate(69;0.0352)				AAGCTGTCATCATCCCAGTTA	0.388													37	55					0	0	1	0	0
HIF3A	64344	broad.mit.edu	37	19	46815879	46815879	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr19:46815879G>A	uc002peh.2	+	8	1023	c.994G>A	c.(994-996)GAG>AAG	p.E332K	HIF3A_uc002pef.1_3'UTR|HIF3A_uc002peg.3_Missense_Mutation_p.E332K|HIF3A_uc010xxx.1_RNA|HIF3A_uc002pei.3_Missense_Mutation_p.E276K|HIF3A_uc002pej.1_Missense_Mutation_p.E263K|HIF3A_uc002pek.2_Missense_Mutation_p.E276K|HIF3A_uc010xxy.1_Missense_Mutation_p.E263K|HIF3A_uc002pel.2_Missense_Mutation_p.E330K|HIF3A_uc010xxz.1_Missense_Mutation_p.E281K	NM_152795	NP_690008	Q9Y2N7	HIF3A_HUMAN	hypoxia inducible factor 3, alpha subunit	332					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|signal transducer activity			upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3		Ovarian(192;0.00965)|all_neural(266;0.0887)		OV - Ovarian serous cystadenocarcinoma(262;0.00204)|all cancers(93;0.0107)|GBM - Glioblastoma multiforme(486;0.0489)|Epithelial(262;0.136)		CCCCCAGTCGGAGAGTATCGT	0.582													42	65					0	0	1	0	0
KPTN	11133	broad.mit.edu	37	19	47983154	47983154	+	Silent	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr19:47983154G>A	uc002pgy.2	-	8	857	c.753C>T	c.(751-753)TCC>TCT	p.S251S	KPTN_uc010xys.1_RNA	NM_007059	NP_008990	Q9Y664	KPTN_HUMAN	kaptin (actin binding protein)	251					actin filament organization|cellular component movement|sensory perception of sound	actin cytoskeleton|growth cone|microtubule organizing center|nucleus|perinuclear region of cytoplasm|stereocilium	actin binding			ovary(1)	1		all_cancers(25;1.55e-10)|all_epithelial(76;3.4e-08)|all_lung(116;1.73e-07)|Lung NSC(112;3.95e-07)|Ovarian(192;0.0139)|all_neural(266;0.026)|Breast(70;0.0503)		OV - Ovarian serous cystadenocarcinoma(262;0.000428)|all cancers(93;0.000631)|Epithelial(262;0.0153)|GBM - Glioblastoma multiforme(486;0.0694)		CAATCACTCGGGAGATGGGAC	0.642													9	21					0	0	1	0	0
SCAF1	58506	broad.mit.edu	37	19	50154274	50154274	+	Missense_Mutation	SNP	C	G	G			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr19:50154274C>G	uc002poq.2	+	7	752	c.628C>G	c.(628-630)CCA>GCA	p.P210A		NM_021228	NP_067051	Q9H7N4	SFR19_HUMAN	SR-related CTD-associated factor 1	210	Pro-rich.				mRNA processing|RNA splicing	nucleus	RNA binding				0		all_lung(116;1.05e-05)|Lung NSC(112;3.77e-05)|all_neural(266;0.196)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.00113)|GBM - Glioblastoma multiforme(134;0.0204)		ttcccctcccccacccccACC	0.398													2	2					0	0	1	0	0
MYBPC2	4606	broad.mit.edu	37	19	50957300	50957300	+	Silent	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr19:50957300G>A	uc002psf.2	+	17	1824	c.1773G>A	c.(1771-1773)AGG>AGA	p.R591R		NM_004533	NP_004524	Q14324	MYPC2_HUMAN	myosin binding protein C, fast type	591	Ig-like C2-type 5.				cell adhesion|muscle filament sliding	cytosol|myosin filament	actin binding|structural constituent of muscle			breast(1)	1		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.0079)|GBM - Glioblastoma multiforme(134;0.0144)		CCGAGGGCAGGACCCGCATCG	0.627													7	10					0	0	1	0	0
MYBPC2	4606	broad.mit.edu	37	19	50958463	50958463	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr19:50958463G>A	uc002psf.2	+	19	2164	c.2113G>A	c.(2113-2115)GAG>AAG	p.E705K		NM_004533	NP_004524	Q14324	MYPC2_HUMAN	myosin binding protein C, fast type	705	Fibronectin type-III 1.				cell adhesion|muscle filament sliding	cytosol|myosin filament	actin binding|structural constituent of muscle			breast(1)	1		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.0079)|GBM - Glioblastoma multiforme(134;0.0144)		CAAGATGATCGAGGGCATCCT	0.517													35	46					0	0	1	0	0
KLK4	9622	broad.mit.edu	37	19	51412513	51412513	+	Silent	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr19:51412513G>A	uc002pua.1	-	2	219	c.219C>T	c.(217-219)TTC>TTT	p.F73F	KLK4_uc002pty.1_Silent_p.F24F|KLK4_uc002ptz.1_RNA|KLK4_uc002pub.1_5'UTR|KLK4_uc002puc.1_RNA|KLK4_uc010eoi.1_5'UTR|KLK4_uc002pud.1_5'Flank	NM_004917	NP_004908	Q9Y5K2	KLK4_HUMAN	kallikrein-related peptidase 4 preproprotein	73	Peptidase S1.				proteolysis	extracellular region	metal ion binding|serine-type endopeptidase activity				0		all_neural(266;0.026)		OV - Ovarian serous cystadenocarcinoma(262;0.00624)|GBM - Glioblastoma multiforme(134;0.00878)		CTCACTTCTGGAAACAGTGTG	0.632													88	110					0	0	1	0	0
ZNF702P	79986	broad.mit.edu	37	19	53472947	53472947	+	RNA	SNP	A	G	G			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr19:53472947A>G	uc002qan.3	-	4		c.1554T>C				NR_003578				Synthetic construct DNA, clone: pF1KB9679, Homo sapiens ZNF702 gene for zinc finger protein 702, without stop codon, in Flexi system.												0						TTACACTTGTAAGGTTTCTCT	0.338													10	24					0	0	1	0	0
LILRB1	10859	broad.mit.edu	37	19	55142732	55142732	+	Silent	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr19:55142732G>A	uc002qgj.2	+	4	385	c.45G>A	c.(43-45)CTG>CTA	p.L15L	LILRB1_uc010erp.1_Silent_p.L32L|LILRB1_uc002qgl.2_Silent_p.L15L|LILRB1_uc002qgk.2_Silent_p.L15L|LILRB1_uc002qgm.2_Silent_p.L15L|LILRB1_uc010erq.2_Silent_p.L15L|LILRB1_uc010err.2_RNA	NM_006669	NP_006660	Q8NHL6	LIRB1_HUMAN	leukocyte immunoglobulin-like receptor,	15					regulation of immune response|response to virus	integral to membrane|plasma membrane	protein phosphatase 1 binding|receptor activity			large_intestine(1)|ovary(1)|skin(1)	3				GBM - Glioblastoma multiforme(193;0.0188)		GGCTGAGTCTGGGCCCCAGGA	0.672										HNSCC(37;0.09)			48	70					0	0	1	0	0
EPS8L1	54869	broad.mit.edu	37	19	55594839	55594840	+	Nonsense_Mutation	DNP	GG	AA	AA			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr19:55594839_55594840GG>AA	uc002qis.3	+	13	1412_1413	c.1308_1309GG>AA	c.(1306-1311)TGGGAG>TGAAAG	p.436_437WE>*K	EPS8L1_uc010ess.1_Nonsense_Mutation_p.418_419WE>*K|EPS8L1_uc010est.1_Nonsense_Mutation_p.436_437WE>*K|EPS8L1_uc010yfr.1_Nonsense_Mutation_p.372_373WE>*K|EPS8L1_uc010esu.1_RNA|EPS8L1_uc002qiu.2_Nonsense_Mutation_p.309_310WE>*K|EPS8L1_uc002qiv.2_Nonsense_Mutation_p.82_83WE>*K|EPS8L1_uc002qiw.2_Nonsense_Mutation_p.183_184WE>*K	NM_133180	NP_573441	Q8TE68	ES8L1_HUMAN	epidermal growth factor receptor pathway	436_437						cytoplasm					0			BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.044)		GCCGCGCCTGGGAGGACCCAGT	0.713													5	13					0	0	1	0	0
NLRP8	126205	broad.mit.edu	37	19	56466597	56466597	+	Silent	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr19:56466597C>T	uc002qmh.2	+	3	1244	c.1173C>T	c.(1171-1173)TCC>TCT	p.S391S	NLRP8_uc010etg.2_Silent_p.S391S	NM_176811	NP_789781	Q86W28	NALP8_HUMAN	NLR family, pyrin domain containing 8	391	NACHT.					cytoplasm	ATP binding			ovary(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|kidney(1)	13		Colorectal(82;0.000147)|Ovarian(87;0.17)		GBM - Glioblastoma multiforme(193;0.0695)		TTCTCTTCTCCATGTGCCGGG	0.463													40	73					0	0	1	0	0
C19orf18	147685	broad.mit.edu	37	19	58483850	58483850	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr19:58483850C>T	uc002qqv.2	-	3	353	c.249G>A	c.(247-249)ATG>ATA	p.M83I		NM_152474	NP_689687	Q8NEA5	CS018_HUMAN	hypothetical protein LOC147685 precursor	83	Extracellular (Potential).					integral to membrane				ovary(1)	1		Colorectal(82;0.000256)|all_neural(62;0.0577)|Breast(46;0.147)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.017)		TCAGGAATTTCATGGGGTTCG	0.483													17	22					0	0	1	0	0
MYT1L	23040	broad.mit.edu	37	2	1926536	1926536	+	Silent	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr2:1926536G>A	uc002qxe.2	-	10	1832	c.1005C>T	c.(1003-1005)TTC>TTT	p.F335F	MYT1L_uc002qxd.2_Silent_p.F335F|MYT1L_uc010ewl.1_RNA	NM_015025	NP_055840	Q9UL68	MYT1L_HUMAN	myelin transcription factor 1-like	335					cell differentiation|nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|central_nervous_system(1)	6	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.037)|all_epithelial(98;0.241)		OV - Ovarian serous cystadenocarcinoma(76;0.169)|all cancers(51;0.244)		TGGCCAGGTCGAAGCACTGAT	0.562													29	37					0	0	1	0	0
MTA3	57504	broad.mit.edu	37	2	42936056	42936056	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr2:42936056G>A	uc002rso.1	+	15	1844	c.1174G>A	c.(1174-1176)GGA>AGA	p.G392R	MTA3_uc002rsp.1_Missense_Mutation_p.G392R|MTA3_uc002rsq.2_Missense_Mutation_p.G449R|MTA3_uc002rsr.2_Missense_Mutation_p.G448R	NM_020744	NP_065795	Q9BTC8	MTA3_HUMAN	metastasis associated 1 family, member 3	449						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2						GGCCATGCAGGGAATGCCAGT	0.478													67	142					0	0	1	0	0
OXER1	165140	broad.mit.edu	37	2	42990231	42990231	+	Silent	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr2:42990231G>A	uc002rss.2	-	1	1171	c.1089C>T	c.(1087-1089)CTC>CTT	p.L363L		NM_148962	NP_683765	Q8TDS5	OXER1_HUMAN	G-protein coupled receptor TG1019	363	Cytoplasmic (Potential).				regulation of cAMP biosynthetic process	integral to membrane|plasma membrane	5(S)-hydroxyperoxy-6E,8Z,11Z,14Z-icosatetraenoic acid binding|5-hydroxy-6E,8Z,11Z,14Z-icosatetraenoic acid binding|5-oxo-6E,8Z,11Z,14Z-icosatetraenoic acid binding|G-protein coupled receptor activity			breast(1)	1						GGCTCTGGTGGAGGAAGTTGG	0.657													9	16					0	0	1	0	0
PROKR1	10887	broad.mit.edu	37	2	68882591	68882591	+	Missense_Mutation	SNP	G	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr2:68882591G>T	uc010yqj.1	+	2	1065	c.1065G>T	c.(1063-1065)AAG>AAT	p.K355N	PROKR1_uc002ses.2_RNA	NM_138964	NP_620414	Q8TCW9	PKR1_HUMAN	G protein-coupled receptor 73	355	Cytoplasmic (Potential).					integral to membrane|plasma membrane	neuropeptide Y receptor activity			ovary(1)	1						ACTTCAAAAAGATCATGTTGC	0.512													28	34					1.2476e-16	1.25882e-16	1	1	0
TGFA	7039	broad.mit.edu	37	2	70683516	70683516	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr2:70683516G>A	uc002sgs.3	-	4	526	c.320C>T	c.(319-321)TCC>TTC	p.S107F	TGFA_uc010fdq.2_Missense_Mutation_p.S113F|TGFA_uc010fdr.2_Missense_Mutation_p.S112F|TGFA_uc002sgt.3_Missense_Mutation_p.S106F|TGFA_uc002sgu.2_Missense_Mutation_p.S106F|TGFA_uc002sgv.2_Missense_Mutation_p.S107F|TGFA_uc002sgw.2_Missense_Mutation_p.S106F	NM_003236	NP_003227	P01135	TGFA_HUMAN	transforming growth factor, alpha isoform 1	107	Helical; (Potential).				activation of MAPK activity|cell proliferation|positive regulation of cell division|positive regulation of epidermal growth factor receptor activity|positive regulation of epithelial cell proliferation|positive regulation of mitosis	cell surface|extracellular space|integral to membrane|plasma membrane	epidermal growth factor receptor binding|growth factor activity|MAP kinase kinase activity|signal transducer activity			prostate(1)	1						GGCCACGATGGAGACCACCAC	0.612													3	4					0	0	1	0	0
ADD2	119	broad.mit.edu	37	2	70933498	70933498	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr2:70933498G>A	uc002sgz.2	-	3	508	c.43C>T	c.(43-45)CCG>TCG	p.P15S	ADD2_uc010fds.1_RNA|ADD2_uc002sgy.2_Missense_Mutation_p.P15S|ADD2_uc002sha.2_Missense_Mutation_p.P15S|ADD2_uc002sgx.2_Missense_Mutation_p.P15S|ADD2_uc010fdt.1_Missense_Mutation_p.P15S|ADD2_uc002shc.1_Missense_Mutation_p.P15S|ADD2_uc002shd.1_Missense_Mutation_p.P15S|ADD2_uc010fdu.1_Missense_Mutation_p.P31S	NM_001617	NP_001608	P35612	ADDB_HUMAN	adducin 2 isoform a	15					actin filament bundle assembly|barbed-end actin filament capping|positive regulation of protein binding	cytoplasm|F-actin capping protein complex|plasma membrane	actin filament binding|calmodulin binding|metal ion binding|protein heterodimerization activity|protein homodimerization activity|spectrin binding			ovary(2)|pancreas(1)	3						TGCCCCTGCGGGGGCGGCGGC	0.632													31	53					0	0	1	0	0
TMEM150A	129303	broad.mit.edu	37	2	85826257	85826257	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr2:85826257C>T	uc002spw.1	-	7	1479	c.758G>A	c.(757-759)GGG>GAG	p.G253E	TMEM150A_uc002spx.1_Missense_Mutation_p.G169E|TMEM150A_uc002spz.1_Missense_Mutation_p.G200E|TMEM150A_uc002sqa.1_Missense_Mutation_p.G169E|TMEM150A_uc002spy.1_Missense_Mutation_p.G253E	NM_001031738	NP_001026908	Q86TG1	T150A_HUMAN	transmembrane protein 150A isoform 1	253	Cytoplasmic (Potential).					integral to membrane|plasma membrane					0						GCTGCTGCTCCCGGAGGACTT	0.632													31	44					0	0	1	0	0
RPIA	22934	broad.mit.edu	37	2	88998008	88998008	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr2:88998008C>T	uc002ste.2	+	2	333	c.292C>T	c.(292-294)CAA>TAA	p.Q98*		NM_144563	NP_653164	P49247	RPIA_HUMAN	ribose 5-phosphate isomerase A	98					pentose-phosphate shunt, non-oxidative branch	cytosol	ribose-5-phosphate isomerase activity			ovary(1)	1		Acute lymphoblastic leukemia(2;0.000456)|all_hematologic(2;0.00287)				GCAGAATAACCAAGTGCTGGG	0.373													59	82					0	0	1	0	0
Unknown	0	broad.mit.edu	37	2	89416877	89416877	+	RNA	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr2:89416877C>T	uc010ytr.1	-	42		c.4725G>A			uc002stl.2_Intron					Parts of antibodies, mostly variable regions.																		GCAAAATCTTCAGGCTGCAGG	0.493													51	65					0	0	1	0	0
Unknown	0	broad.mit.edu	37	2	89476122	89476122	+	RNA	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr2:89476122C>T	uc010ytr.1	-	28		c.3359G>A			uc002stl.2_Intron					Parts of antibodies, mostly variable regions.																		CCCACTGGATCCTGAAATAAT	0.408													44	60					0	0	1	0	0
VWA3B	200403	broad.mit.edu	37	2	98834465	98834465	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr2:98834465G>A	uc002syo.2	+	14	2257	c.1993G>A	c.(1993-1995)GAT>AAT	p.D665N	VWA3B_uc002syj.2_RNA|VWA3B_uc002syk.1_RNA|VWA3B_uc002syl.1_Missense_Mutation_p.D184N|VWA3B_uc002sym.2_Missense_Mutation_p.D665N|VWA3B_uc002syn.1_RNA|VWA3B_uc010yvi.1_Missense_Mutation_p.D322N|VWA3B_uc002syp.1_Missense_Mutation_p.D57N|VWA3B_uc002syq.1_5'UTR|VWA3B_uc002syr.1_5'UTR	NM_144992	NP_659429	Q502W6	VWA3B_HUMAN	von Willebrand factor A domain containing 3B	665	VWFA.									ovary(3)|large_intestine(2)|skin(1)	6						TGGTTGCAAGGATCCCACTCC	0.453													20	33					0	0	1	0	0
VWA3B	200403	broad.mit.edu	37	2	98834468	98834468	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr2:98834468C>T	uc002syo.2	+	14	2260	c.1996C>T	c.(1996-1998)CCC>TCC	p.P666S	VWA3B_uc002syj.2_RNA|VWA3B_uc002syk.1_RNA|VWA3B_uc002syl.1_Missense_Mutation_p.P185S|VWA3B_uc002sym.2_Missense_Mutation_p.P666S|VWA3B_uc002syn.1_RNA|VWA3B_uc010yvi.1_Missense_Mutation_p.P323S|VWA3B_uc002syp.1_Missense_Mutation_p.P58S|VWA3B_uc002syq.1_5'UTR|VWA3B_uc002syr.1_5'UTR	NM_144992	NP_659429	Q502W6	VWA3B_HUMAN	von Willebrand factor A domain containing 3B	666	VWFA.									ovary(3)|large_intestine(2)|skin(1)	6						TTGCAAGGATCCCACTCCCCC	0.453													20	35					0	0	1	0	0
CCDC93	54520	broad.mit.edu	37	2	118688722	118688722	+	Missense_Mutation	SNP	T	C	C			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr2:118688722T>C	uc002tlj.2	-	23	1859	c.1733A>G	c.(1732-1734)GAA>GGA	p.E578G		NM_019044	NP_061917	Q567U6	CCD93_HUMAN	coiled-coil domain containing 93	578	Potential.									large_intestine(1)|ovary(1)	2						CTTTTTCTTTTCCATCTGTTG	0.408													37	52					0	0	1	0	0
POTEF	728378	broad.mit.edu	37	2	130877866	130877866	+	Missense_Mutation	SNP	T	C	C			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr2:130877866T>C	uc010fmh.2	-	3	623	c.223A>G	c.(223-225)AGT>GGT	p.S75G		NM_001099771	NP_001093241	A5A3E0	POTEF_HUMAN	prostate, ovary, testis expressed protein on	75						cell cortex	ATP binding			skin(3)|ovary(2)	5						CTCTTGCCACTCCCCCTGCAG	0.592													5	237					0	0	1	0	0
FAM123C	205147	broad.mit.edu	37	2	131520881	131520881	+	Silent	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr2:131520881C>T	uc002trw.2	+	2	1426	c.1236C>T	c.(1234-1236)TTC>TTT	p.F412F	FAM123C_uc010fmv.2_Silent_p.F412F|FAM123C_uc010fms.1_Silent_p.F412F|FAM123C_uc010fmt.1_Silent_p.F412F|FAM123C_uc010fmu.1_Silent_p.F412F	NM_152698	NP_689911	Q8N944	F123C_HUMAN	hypothetical protein LOC205147	412										pancreas(2)|ovary(1)	3	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.13)		CCGCCACCTTCCCACGGGACA	0.617													23	22					0	0	1	0	0
YSK4	80122	broad.mit.edu	37	2	135738568	135738568	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr2:135738568G>A	uc002tue.1	-	9	3774	c.3743C>T	c.(3742-3744)TCA>TTA	p.S1248L	YSK4_uc002tuf.1_Missense_Mutation_p.S430L|YSK4_uc010fnc.1_Missense_Mutation_p.S382L|YSK4_uc010fnd.1_Missense_Mutation_p.S1135L|YSK4_uc010zbg.1_Missense_Mutation_p.S380L|YSK4_uc002tuh.3_Missense_Mutation_p.S976L|YSK4_uc002tui.3_3'UTR	NM_025052	NP_079328	Q56UN5	YSK4_HUMAN	Yeast Sps1/Ste20-related kinase 4 isoform 1	1248	Protein kinase.						ATP binding|protein serine/threonine kinase activity			stomach(2)|urinary_tract(1)|ovary(1)|breast(1)	5				BRCA - Breast invasive adenocarcinoma(221;0.112)		CCAGATATCTGATTTCCGTCC	0.498													28	30					0	0	1	0	0
YSK4	80122	broad.mit.edu	37	2	135744092	135744092	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr2:135744092G>A	uc002tue.1	-	7	2381	c.2350C>T	c.(2350-2352)CAT>TAT	p.H784Y	YSK4_uc002tuf.1_Intron|YSK4_uc010fnc.1_Intron|YSK4_uc010fnd.1_Missense_Mutation_p.H671Y|YSK4_uc010zbg.1_Intron|YSK4_uc002tuh.3_Missense_Mutation_p.H512Y|YSK4_uc002tui.3_Missense_Mutation_p.H801Y	NM_025052	NP_079328	Q56UN5	YSK4_HUMAN	Yeast Sps1/Ste20-related kinase 4 isoform 1	784							ATP binding|protein serine/threonine kinase activity			stomach(2)|urinary_tract(1)|ovary(1)|breast(1)	5				BRCA - Breast invasive adenocarcinoma(221;0.112)		TTCATGGGATGAATTTCATCT	0.393													27	37					0	0	1	0	0
YSK4	80122	broad.mit.edu	37	2	135744095	135744095	+	Missense_Mutation	SNP	T	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr2:135744095T>A	uc002tue.1	-	7	2378	c.2347A>T	c.(2347-2349)ATT>TTT	p.I783F	YSK4_uc002tuf.1_Intron|YSK4_uc010fnc.1_Intron|YSK4_uc010fnd.1_Missense_Mutation_p.I670F|YSK4_uc010zbg.1_Intron|YSK4_uc002tuh.3_Missense_Mutation_p.I511F|YSK4_uc002tui.3_Missense_Mutation_p.I800F	NM_025052	NP_079328	Q56UN5	YSK4_HUMAN	Yeast Sps1/Ste20-related kinase 4 isoform 1	783							ATP binding|protein serine/threonine kinase activity			stomach(2)|urinary_tract(1)|ovary(1)|breast(1)	5				BRCA - Breast invasive adenocarcinoma(221;0.112)		ATGGGATGAATTTCATCTTTG	0.393													28	38					0	0	1	0	0
SCN3A	6328	broad.mit.edu	37	2	166011006	166011006	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr2:166011006G>A	uc002ucx.2	-	11	1828	c.1336C>T	c.(1336-1338)CAG>TAG	p.Q446*	SCN3A_uc002ucy.2_Nonsense_Mutation_p.Q446*|SCN3A_uc002ucz.2_Nonsense_Mutation_p.Q446*|SCN3A_uc002uda.1_Nonsense_Mutation_p.Q315*|SCN3A_uc002udb.1_Nonsense_Mutation_p.Q315*	NM_006922	NP_008853	Q9NY46	SCN3A_HUMAN	sodium channel, voltage-gated, type III, alpha	446						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10					Lamotrigine(DB00555)	AGCATCTGCTGAAATTCGGCC	0.398													38	34					0	0	1	0	0
SCN2A	6326	broad.mit.edu	37	2	166170253	166170253	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr2:166170253G>A	uc002udc.2	+	9	1448	c.1158G>A	c.(1156-1158)TGG>TGA	p.W386*	SCN2A_uc002udd.2_Nonsense_Mutation_p.W386*|SCN2A_uc002ude.2_Nonsense_Mutation_p.W386*	NM_001040142	NP_001035232	Q99250	SCN2A_HUMAN	sodium channel, voltage-gated, type II, alpha	386	I.				myelination	node of Ranvier|voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|breast(1)|pancreas(1)	8					Lamotrigine(DB00555)	AAGACTTCTGGGAAAACCTTT	0.383													18	21					0	0	1	0	0
SCN2A	6326	broad.mit.edu	37	2	166201121	166201121	+	Silent	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr2:166201121C>T	uc002udc.2	+	16	2909	c.2619C>T	c.(2617-2619)ATC>ATT	p.I873I	SCN2A_uc002udd.2_Silent_p.I873I|SCN2A_uc002ude.2_Silent_p.I873I	NM_001040142	NP_001035232	Q99250	SCN2A_HUMAN	sodium channel, voltage-gated, type II, alpha	873	II.				myelination	node of Ranvier|voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|breast(1)|pancreas(1)	8					Lamotrigine(DB00555)	TAATTAAGATCATTGGCAATT	0.423													38	31					0	0	1	0	0
SCN1A	6323	broad.mit.edu	37	2	166908336	166908336	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr2:166908336G>A	uc010zcz.1	-	6	875	c.857C>T	c.(856-858)TCC>TTC	p.S286F	SCN1A_uc002udo.3_Missense_Mutation_p.S155F|SCN1A_uc010fpk.2_Missense_Mutation_p.S155F	NM_006920	NP_008851	P35498	SCN1A_HUMAN	sodium channel, voltage-gated, type I, alpha	286	I.					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|skin(6)|large_intestine(1)	13					Lamotrigine(DB00555)|Levetiracetam(DB01202)|Phenacemide(DB01121)|Phenytoin(DB00252)|Topiramate(DB00273)|Zonisamide(DB00909)	TTCCTCCAAGGAAGCATTGGT	0.383													30	23					0	0	1	0	0
STK39	27347	broad.mit.edu	37	2	169020276	169020276	+	Missense_Mutation	SNP	T	C	C			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr2:169020276T>C	uc002uea.2	-	4	705	c.545A>G	c.(544-546)TAT>TGT	p.Y182C		NM_013233	NP_037365	Q9UEW8	STK39_HUMAN	serine threonine kinase 39 (STE20/SPS1 homolog,	182	Protein kinase.				response to stress	cytoplasm|nucleus	ATP binding|protein binding|receptor signaling protein serine/threonine kinase activity			central_nervous_system(1)|skin(1)	2						TCTGTGTAGATAGTCTAAGCC	0.378													4	50					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179452311	179452311	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr2:179452311C>T	uc010zfg.1	-	255	56245	c.56021G>A	c.(56020-56022)GGA>GAA	p.G18674E	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.G12369E|TTN_uc010zfi.1_Missense_Mutation_p.G12302E|TTN_uc010zfj.1_Missense_Mutation_p.G12177E	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	19601							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GGAATATTTTCCTGAGTCATC	0.428													9	16					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179485607	179485607	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr2:179485607C>T	uc010zfg.1	-	196	38250	c.38026G>A	c.(38026-38028)GAA>AAA	p.E12676K	TTN_uc010zfh.1_Missense_Mutation_p.E6371K|TTN_uc010zfi.1_Missense_Mutation_p.E6304K|TTN_uc010zfj.1_Missense_Mutation_p.E6179K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	13603							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATAGCTTCTTCATTTCTGAAC	0.408													18	29					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179571228	179571228	+	Silent	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr2:179571228C>T	uc010zfg.1	-	99	25865	c.25641G>A	c.(25639-25641)AGG>AGA	p.R8547R	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.R5208R	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	9474							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTTGTTTCTTCCTTTCATCCA	0.323													11	18					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179611649	179611649	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr2:179611649C>T	uc002unb.2	-	46	15702	c.15478G>A	c.(15478-15480)GAA>AAA	p.E5160K	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CGCCATATTTCATAAGCTGAA	0.398													44	65					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179616605	179616605	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr2:179616605G>A	uc002unb.2	-	46	10746	c.10522C>T	c.(10522-10524)CAG>TAG	p.Q3508*	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GTAAGTTTCTGGGTAAAAGAA	0.358													26	50					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179664612	179664612	+	Silent	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr2:179664612C>T	uc002und.2	-	5	834	c.609G>A	c.(607-609)AAG>AAA	p.K203K	TTN_uc010zfg.1_Silent_p.K203K|TTN_uc010zfh.1_Silent_p.K203K|TTN_uc010zfi.1_Silent_p.K203K|TTN_uc010zfj.1_Silent_p.K203K|TTN_uc002unb.2_Silent_p.K203K			Q8WZ42	TITIN_HUMAN	Homo sapiens cDNA FLJ32040 fis, clone NTONG2000858, highly similar to H.sapiens mRNA for titin protein.	203							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTGTCTTTGTCTTTTTAGCAG	0.398													24	33					0	0	1	0	0
NEUROD1	4760	broad.mit.edu	37	2	182543168	182543168	+	Silent	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr2:182543168G>A	uc002uof.2	-	2	656	c.420C>T	c.(418-420)ATC>ATT	p.I140I	CERKL_uc002uod.1_Intron	NM_002500	NP_002491	Q13562	NDF1_HUMAN	neurogenic differentiation 1	140	Helix-loop-helix motif.				amacrine cell differentiation|cerebellum development|dentate gyrus development|embryonic organ morphogenesis|enteroendocrine cell differentiation|glucose homeostasis|inner ear development|insulin secretion|negative regulation of apoptosis|nitric oxide mediated signal transduction|positive regulation of apoptosis|positive regulation of neuron differentiation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|regulation of cell cycle arrest|regulation of intestinal epithelial structure maintenance|response to glucose stimulus	cytoplasm|nucleus	chromatin binding|E-box binding|protein heterodimerization activity|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription factor binding			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.088)			GCAGAGTCTCGATTTTGGACA	0.582													27	33					0	0	1	0	0
DNAH7	56171	broad.mit.edu	37	2	196801363	196801363	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr2:196801363C>T	uc002utj.3	-	20	3333	c.3232G>A	c.(3232-3234)GAA>AAA	p.E1078K		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	1078	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						TCAAGAAGTTCATCATTGGAC	0.299													8	12					0	0	1	0	0
STK17B	9262	broad.mit.edu	37	2	197010643	197010643	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr2:197010643C>T	uc002utk.2	-	4	796	c.472G>A	c.(472-474)GAT>AAT	p.D158N	STK17B_uc010fsh.2_Missense_Mutation_p.D158N	NM_004226	NP_004217	O94768	ST17B_HUMAN	serine/threonine kinase 17B	158	Protein kinase.	Proton acceptor (By similarity).			apoptosis|induction of apoptosis|intracellular protein kinase cascade	nucleus	ATP binding|protein serine/threonine kinase activity			lung(2)	2			OV - Ovarian serous cystadenocarcinoma(117;0.141)			ACCTTTAAATCAAGGTGTACA	0.328													8	25					0	0	1	0	0
PLCL1	5334	broad.mit.edu	37	2	198949115	198949115	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr2:198949115G>A	uc010fsp.2	+	2	1165	c.874G>A	c.(874-876)GAA>AAA	p.E292K	PLCL1_uc002uuv.3_Missense_Mutation_p.E213K	NM_001114661	NP_001108133	Q15111	PLCL1_HUMAN	RecName: Full=Inactive phospholipase C-like protein 1;          Short=PLC-L1; AltName: Full=Phospholipase C-deleted in lung carcinoma; AltName: Full=Phospholipase C-related but catalytically inactive protein;          Short=PRIP;	292					intracellular signal transduction|lipid metabolic process	cytoplasm	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			ovary(1)|skin(1)	2					Quinacrine(DB01103)	GAAGAGCAAGGAAAAACTAAC	0.393													34	49					0	0	1	0	0
FZD7	8324	broad.mit.edu	37	2	202900456	202900456	+	Silent	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr2:202900456C>T	uc002uyw.1	+	1	1147	c.1086C>T	c.(1084-1086)TTC>TTT	p.F362F		NM_003507	NP_003498	O75084	FZD7_HUMAN	frizzled 7 precursor	362	Cytoplasmic (Potential).				axonogenesis|brain development|canonical Wnt receptor signaling pathway|cellular response to retinoic acid|G-protein signaling, coupled to cGMP nucleotide second messenger|gonad development|mesenchymal to epithelial transition|negative regulation of cell-substrate adhesion|negative regulation of ectodermal cell fate specification|positive regulation of epithelial cell proliferation involved in wound healing|positive regulation of phosphorylation|positive regulation of transcription, DNA-dependent|regulation of catenin import into nucleus|vasculature development|Wnt receptor signaling pathway, calcium modulating pathway	apical part of cell|cytoplasm|integral to membrane|neuron projection membrane	G-protein coupled receptor activity|PDZ domain binding|Wnt receptor activity|Wnt-protein binding			skin(2)|ovary(1)|breast(1)	4						TCACTTGGTTCCTGGCGGCCG	0.617											OREG0015146	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	34	52					0	0	1	0	0
ERBB4	2066	broad.mit.edu	37	2	213403228	213403228	+	Silent	SNP	G	C	C			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr2:213403228G>C	uc002veg.1	-	1	125	c.27C>G	c.(25-27)GTC>GTG	p.V9V	ERBB4_uc002veh.1_Silent_p.V9V|ERBB4_uc010zji.1_Silent_p.V9V|ERBB4_uc010zjj.1_Silent_p.V9V|ERBB4_uc010fut.1_Silent_p.V9V	NM_005235	NP_005226	Q15303	ERBB4_HUMAN	v-erb-a erythroblastic leukemia viral oncogene	9					cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent|transmembrane receptor protein tyrosine kinase signaling pathway	basolateral plasma membrane|cytoplasm|integral to membrane|nucleus	ATP binding|protein binding|receptor signaling protein tyrosine kinase activity|transmembrane receptor protein tyrosine kinase activity			lung(21)|skin(5)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	33		Renal(323;0.06)|Lung NSC(271;0.197)		UCEC - Uterine corpus endometrioid carcinoma (47;0.214)|Epithelial(149;5.86e-06)|all cancers(144;2.95e-05)|Lung(261;0.00244)|LUSC - Lung squamous cell carcinoma(224;0.00266)		GGCTCACCCAGACCCAAAGTC	0.612										TSP Lung(8;0.080)			49	64					0	0	1	0	0
ATIC	471	broad.mit.edu	37	2	216190051	216190051	+	Silent	SNP	T	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr2:216190051T>A	uc002vex.3	+	5	552	c.378T>A	c.(376-378)ATT>ATA	p.I126I	ATIC_uc010zjo.1_Silent_p.I67I|ATIC_uc002vey.3_Silent_p.I125I	NM_004044	NP_004035	P31939	PUR9_HUMAN	5-aminoimidazole-4-carboxamide ribonucleotide	126	IMP.				IMP biosynthetic process|purine base metabolic process	cytosol	IMP cyclohydrolase activity|phosphoribosylaminoimidazolecarboxamide formyltransferase activity|protein homodimerization activity		ATIC/ALK(24)	haematopoietic_and_lymphoid_tissue(22)|ovary(2)|lung(2)|soft_tissue(2)|skin(1)	29		Renal(323;0.229)		Epithelial(149;2.02e-06)|all cancers(144;0.000316)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.0097)	Tetrahydrofolic acid(DB00116)	AAATTGACATTGGTAAGTCAG	0.353			T	ALK	ALCL								10	22					0	0	1	0	0
COL6A3	1293	broad.mit.edu	37	2	238285527	238285527	+	Silent	SNP	G	A	A	rs145203676		TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr2:238285527G>A	uc002vwl.2	-	7	3243	c.2958C>T	c.(2956-2958)ATC>ATT	p.I986I	COL6A3_uc002vwo.2_Silent_p.I780I|COL6A3_uc010znj.1_Silent_p.I379I|COL6A3_uc002vwq.2_Silent_p.I780I|COL6A3_uc002vwr.2_Silent_p.I579I|COL6A3_uc010znk.1_Silent_p.I786I	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	986	Nonhelical region.|VWFA 5.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		GAGACAGCACGATCTGCTCTA	0.512													70	96					0	0	1	0	0
ESPNL	339768	broad.mit.edu	37	2	239037360	239037360	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr2:239037360G>A	uc002vxq.3	+	8	1338	c.1228G>A	c.(1228-1230)GCG>ACG	p.A410T	ESPNL_uc010fyw.2_Missense_Mutation_p.A106T	NM_194312	NP_919288	Q6ZVH7	ESPNL_HUMAN	espin-like	410										pancreas(1)	1		Breast(86;7.61e-05)|Renal(207;0.00183)|Ovarian(221;0.0481)|all_hematologic(139;0.158)|all_lung(227;0.198)|Melanoma(123;0.203)|Hepatocellular(293;0.244)		Epithelial(121;4.71e-24)|OV - Ovarian serous cystadenocarcinoma(60;3.02e-12)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;5.63e-08)|BRCA - Breast invasive adenocarcinoma(100;0.000109)|Lung(119;0.0108)|LUSC - Lung squamous cell carcinoma(224;0.0253)		GACAGAGACGGCGCTGGCGGG	0.697													9	6					0	0	1	0	0
CDC25B	994	broad.mit.edu	37	20	3782450	3782450	+	Splice_Site	SNP	G	C	C			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr20:3782450G>C	uc002wjn.2	+	9	1699	c.921_splice	c.e9+1	p.K307_splice	CDC25B_uc010zqk.1_Splice_Site_p.K243_splice|CDC25B_uc010zql.1_Splice_Site_p.K229_splice|CDC25B_uc010zqm.1_Intron|CDC25B_uc002wjl.2_Splice_Site_p.K195_splice|CDC25B_uc002wjm.2_Splice_Site_p.K195_splice|CDC25B_uc002wjo.2_Splice_Site_p.K293_splice|CDC25B_uc002wjp.2_Splice_Site_p.K266_splice|CDC25B_uc002wjq.2_Splice_Site_p.K107_splice|CDC25B_uc010gbc.2_5'Flank	NM_021873	NP_068659	P30305	MPIP2_HUMAN	cell division cycle 25B isoform 1						cell division|G2/M transition of mitotic cell cycle|mitosis|positive regulation of cell proliferation	cytosol|microtubule organizing center|nucleoplasm	protein binding|protein tyrosine phosphatase activity			lung(3)|ovary(2)	5						AGAGGAAAAGGTGGGCCTCTG	0.582													16	17					0	0	1	0	0
CSRP2BP	57325	broad.mit.edu	37	20	18143485	18143485	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr20:18143485G>A	uc002wqj.2	+	7	2189	c.1567G>A	c.(1567-1569)GAC>AAC	p.D523N	CSRP2BP_uc002wqk.2_Missense_Mutation_p.D395N|CSRP2BP_uc010zru.1_Missense_Mutation_p.D394N	NM_020536	NP_065397	Q9H8E8	CSR2B_HUMAN	CSRP2 binding protein	523					histone H3 acetylation	Ada2/Gcn5/Ada3 transcription activator complex|cytoplasm	LIM domain binding|N-acetyltransferase activity			lung(3)|ovary(2)|skin(1)	6						TTTGTTAGTTGACGGGATTTA	0.448													41	56					0	0	1	0	0
CSRP2BP	57325	broad.mit.edu	37	20	18165328	18165328	+	Silent	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr20:18165328C>T	uc002wqj.2	+	10	2689	c.2067C>T	c.(2065-2067)TTC>TTT	p.F689F	CSRP2BP_uc002wqk.2_Silent_p.F561F|CSRP2BP_uc010zru.1_Silent_p.F560F	NM_020536	NP_065397	Q9H8E8	CSR2B_HUMAN	CSRP2 binding protein	689	N-acetyltransferase.				histone H3 acetylation	Ada2/Gcn5/Ada3 transcription activator complex|cytoplasm	LIM domain binding|N-acetyltransferase activity			lung(3)|ovary(2)|skin(1)	6						CCTTTGGCTTCATGGTTCCTG	0.398													35	34					0	0	1	0	0
XKR7	343702	broad.mit.edu	37	20	30584465	30584465	+	Silent	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr20:30584465G>A	uc002wxe.2	+	3	1119	c.945G>A	c.(943-945)CTG>CTA	p.L315L		NM_001011718	NP_001011718	Q5GH72	XKR7_HUMAN	XK, Kell blood group complex subunit-related	315	Helical; (Potential).					integral to membrane				ovary(1)|breast(1)|skin(1)	3			Colorectal(19;0.00306)|COAD - Colon adenocarcinoma(19;0.0347)			CCCGCGGCCTGGCCTTCGCGC	0.642													11	28					0	0	1	0	0
PLAGL2	5326	broad.mit.edu	37	20	30789802	30789802	+	Silent	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr20:30789802G>A	uc002wxn.2	-	2	397	c.180C>T	c.(178-180)CTC>CTT	p.L60L		NM_002657	NP_002648	Q9UPG8	PLAL2_HUMAN	pleiomorphic adenoma gene-like 2	60						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2			UCEC - Uterine corpus endometrioid carcinoma (5;0.0241)			CTGGTTGCGGGAGGCTGTGAG	0.542													28	40					0	0	1	0	0
C20orf71	128861	broad.mit.edu	37	20	31805372	31805372	+	Silent	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr20:31805372C>T	uc002wyr.2	+	1	238	c.30C>T	c.(28-30)ATC>ATT	p.I10I	C20orf71_uc002wys.2_Silent_p.I10I	NM_178466	NP_848561	Q9BQP9	SPLC3_HUMAN	short long palate, lung and nasal epithelium	10						extracellular region	lipid binding			ovary(1)|skin(1)	2						GGCTCCTCATCTTCCTCGGGT	0.592													33	54					0	0	1	0	0
ZNF341	84905	broad.mit.edu	37	20	32379235	32379235	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr20:32379235C>T	uc002wzy.2	+	15	2497	c.2477C>T	c.(2476-2478)TCC>TTC	p.S826F	ZNF341_uc002wzx.2_Missense_Mutation_p.S819F|ZNF341_uc010geq.2_Missense_Mutation_p.S736F|ZNF341_uc010ger.2_RNA|ZNF341_uc002wzz.2_Missense_Mutation_p.S253F	NM_032819	NP_116208	Q9BYN7	ZN341_HUMAN	zinc finger protein 341	826					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						GGGCTGGGCTCCAACCTGGCT	0.682													19	26					0	0	1	0	0
CEP250	11190	broad.mit.edu	37	20	34081376	34081376	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr20:34081376G>A	uc002xcm.2	+	24	3681	c.3010G>A	c.(3010-3012)GAT>AAT	p.D1004N	CEP250_uc010zve.1_Missense_Mutation_p.D372N	NM_007186	NP_009117	Q9BV73	CP250_HUMAN	centrosomal protein 2	1004	Gln/Glu-rich.|Potential.				centriole-centriole cohesion|G2/M transition of mitotic cell cycle|protein localization|regulation of centriole-centriole cohesion	centriole|cilium|cytosol|microtubule basal body|perinuclear region of cytoplasm|protein complex	protein C-terminus binding|protein kinase binding			ovary(4)|central_nervous_system(1)	5	Lung NSC(9;0.00156)|all_lung(11;0.00243)		BRCA - Breast invasive adenocarcinoma(18;0.0106)			CCTGCTGCAGGATAAGATGGA	0.612													11	14					0	0	1	0	0
C20orf117	140710	broad.mit.edu	37	20	35425314	35425314	+	Silent	SNP	T	C	C			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr20:35425314T>C	uc002xgd.1	-	13	3066	c.2739A>G	c.(2737-2739)GAA>GAG	p.E913E	C20orf117_uc002xge.1_RNA	NM_199181	NP_954650	O94964	K0889_HUMAN	hypothetical protein LOC140710 isoform 2	913											0		Myeloproliferative disorder(115;0.00874)				CAAGCTCAACTTCGGAAACAG	0.577													33	57					0	0	1	0	0
ADA	100	broad.mit.edu	37	20	43255108	43255108	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr20:43255108C>T	uc002xmj.2	-	4	479	c.351G>A	c.(349-351)TGG>TGA	p.W117*	ADA_uc010ggt.2_RNA	NM_000022	NP_000013	P00813	ADA_HUMAN	adenosine deaminase	117					adenosine catabolic process|cell adhesion|hypoxanthine salvage|inosine biosynthetic process|negative regulation of adenosine receptor signaling pathway|purine nucleotide salvage|purine ribonucleoside monophosphate biosynthetic process|regulation of cell-cell adhesion mediated by integrin|response to hypoxia|T cell activation	cell junction|cytoplasmic membrane-bounded vesicle lumen|cytosol|external side of plasma membrane|lysosome	adenosine deaminase activity|protein binding|zinc ion binding			pancreas(2)|ovary(1)	3		all_lung(126;1.24e-07)|Lung NSC(126;1.94e-07)|Myeloproliferative disorder(115;0.0122)	COAD - Colon adenocarcinoma(18;0.00189)		Adenosine(DB00640)|Cladribine(DB00242)|Dipyridamole(DB00975)|Erythromycin(DB00199)|Fludarabine(DB01073)|Idoxuridine(DB00249)|Nelarabine(DB01280)|Pentostatin(DB00552)|Theophylline(DB00277)|Vidarabine(DB00194)	CAGCCTGGTTCCAGGGGATTG	0.592									Adenosine_Deaminase_Deficiency				32	29					0	0	1	0	0
SLPI	6590	broad.mit.edu	37	20	43882350	43882350	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr20:43882350G>A	uc002xnm.1	-	2	132	c.110C>T	c.(109-111)CCT>CTT	p.P37L		NM_003064	NP_003055	P03973	SLPI_HUMAN	secretory leukocyte peptidase inhibitor	37	Trypsin inhibitory domain.|WAP 1.					extracellular region	serine-type endopeptidase inhibitor activity			ovary(1)	1		Myeloproliferative disorder(115;0.0122)				AGATTTCTTAGGAGGACAGAC	0.507													14	21					0	0	1	0	0
TSHZ2	128553	broad.mit.edu	37	20	51871276	51871276	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr20:51871276G>A	uc002xwo.2	+	2	2235	c.1279G>A	c.(1279-1281)GAG>AAG	p.E427K		NM_173485	NP_775756	Q9NRE2	TSH2_HUMAN	teashirt zinc finger homeobox 2	427					multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|haematopoietic_and_lymphoid_tissue(1)	6			STAD - Stomach adenocarcinoma(23;0.1)			GTTAGCAGTGGAGAAAATGCA	0.512													71	108					0	0	1	0	0
APCDD1L	164284	broad.mit.edu	37	20	57036205	57036205	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr20:57036205C>T	uc002xze.1	-	4	1333	c.1147G>A	c.(1147-1149)GGG>AGG	p.G383R	APCDD1L_uc010zzp.1_Missense_Mutation_p.G394R	NM_153360	NP_699191	Q8NCL9	APCDL_HUMAN	adenomatosis polyposis coli down-regulated	383						integral to membrane				ovary(1)	1	Lung NSC(12;0.000856)|all_lung(29;0.0025)		BRCA - Breast invasive adenocarcinoma(13;5.6e-11)|Epithelial(14;1.67e-07)|all cancers(14;1.48e-06)			GACCAGGCCCCCGCACCCCCA	0.632													48	70					0	0	1	0	0
NPEPL1	79716	broad.mit.edu	37	20	57290271	57290271	+	Silent	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr20:57290271C>T	uc010zzs.1	+	12	1556	c.1461C>T	c.(1459-1461)TTC>TTT	p.F487F	NPEPL1_uc010zzr.1_Silent_p.F439F|NPEPL1_uc002xzn.2_RNA|NPEPL1_uc010gjo.1_Silent_p.F459F|NPEPL1_uc002xzp.2_3'UTR	NM_024663	NP_078939	Q8NDH3	PEPL1_HUMAN	aminopeptidase-like 1	487					proteolysis	cytoplasm	aminopeptidase activity|manganese ion binding|metalloexopeptidase activity				0	all_lung(29;0.0175)		BRCA - Breast invasive adenocarcinoma(13;2.88e-09)|Colorectal(105;0.109)			TGGCGCTCTTCGGCCGTGCCT	0.662													7	9					0	0	1	0	0
COL20A1	57642	broad.mit.edu	37	20	61946769	61946769	+	Silent	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr20:61946769C>T	uc011aau.1	+	20	2602	c.2502C>T	c.(2500-2502)CTC>CTT	p.L834L	COL20A1_uc011aav.1_Silent_p.L655L	NM_020882	NP_065933	Q9P218	COKA1_HUMAN	collagen, type XX, alpha 1	834					cell adhesion	collagen|extracellular space	structural molecule activity			central_nervous_system(1)	1	all_cancers(38;1.39e-10)					GCCCAGCCCTCCGCCCTGACG	0.697													4	8					0	0	1	0	0
RTEL1	51750	broad.mit.edu	37	20	62292755	62292755	+	Silent	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr20:62292755C>T	uc002yfu.1	+	3	550	c.207C>T	c.(205-207)GCC>GCT	p.A69A	RTEL1_uc011abc.1_RNA|RTEL1_uc002yft.1_Silent_p.A69A|RTEL1_uc011abd.1_Silent_p.A69A|RTEL1_uc002yfv.2_Silent_p.A69A|RTEL1_uc011abe.1_5'UTR|RTEL1_uc002yfw.2_RNA	NM_016434	NP_057518	Q9NZ71	RTEL1_HUMAN	regulator of telomere elongation helicase 1	69	Helicase ATP-binding.				DNA repair|regulation of double-strand break repair via homologous recombination|telomere maintenance	nucleus	ATP binding|ATP-dependent DNA helicase activity|DNA binding|iron-sulfur cluster binding|metal ion binding				0	all_cancers(38;6.47e-12)|all_epithelial(29;3.75e-13)		Epithelial(9;1.25e-09)|all cancers(9;5.13e-09)|BRCA - Breast invasive adenocarcinoma(10;7.26e-05)|OV - Ovarian serous cystadenocarcinoma(5;0.00223)|Colorectal(105;0.107)			GCATCTCTGCCCGCAAGATTG	0.632													27	43					0	0	1	0	0
C21orf99	149992	broad.mit.edu	37	21	14439197	14439197	+	RNA	SNP	G	C	C			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr21:14439197G>C	uc002yja.3	+	10		c.2715G>C				NR_026916				Homo sapiens C21orf99 protein (C21orf99) mRNA, complete cds.												0						AAGAAGAAGAGAAGAGAAGAA	0.289													2	17					0	0	1	0	0
TMPRSS15	5651	broad.mit.edu	37	21	19698756	19698756	+	Silent	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr21:19698756C>T	uc002ykw.2	-	16	1945	c.1914G>A	c.(1912-1914)GGG>GGA	p.G638G		NM_002772	NP_002763	P98073	ENTK_HUMAN	enterokinase precursor	638	Extracellular (Potential).				proteolysis	brush border|integral to membrane	scavenger receptor activity|serine-type endopeptidase activity			ovary(5)|upper_aerodigestive_tract(1)|breast(1)|skin(1)	8						TACCTGGAATCCCCAAGTGAT	0.408													64	83					0	0	1	0	0
TIAM1	7074	broad.mit.edu	37	21	32582405	32582405	+	Missense_Mutation	SNP	G	C	C			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr21:32582405G>C	uc002yow.1	-	12	2816	c.2344C>G	c.(2344-2346)CGG>GGG	p.R782G	TIAM1_uc011adk.1_Missense_Mutation_p.R782G|TIAM1_uc011adl.1_Missense_Mutation_p.R757G	NM_003253	NP_003244	Q13009	TIAM1_HUMAN	T-cell lymphoma invasion and metastasis 1	782	RBD.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cell-cell junction|cytosol	receptor signaling protein activity|Rho guanyl-nucleotide exchange factor activity			lung(3)|breast(3)|ovary(2)|large_intestine(2)	10						TCGCCTGGCCGGACGACCGTC	0.552													28	35					0	0	1	0	0
SFRS15	57466	broad.mit.edu	37	21	33074171	33074171	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr21:33074171G>A	uc002ypd.2	-	6	944	c.518C>T	c.(517-519)TCC>TTC	p.S173F	SFRS15_uc002ype.2_Missense_Mutation_p.S173F|SFRS15_uc010glu.2_Missense_Mutation_p.S158F|SFRS15_uc002ypf.1_5'UTR|SFRS15_uc002ypg.2_Missense_Mutation_p.S173F	NM_020706	NP_065757	O95104	SFR15_HUMAN	splicing factor, arginine/serine-rich 15 isoform	173						nucleus	nucleotide binding|RNA binding				0						AGCTGGGACGGAGTTTGGAGT	0.463													21	33					0	0	1	0	0
KCNE1	3753	broad.mit.edu	37	21	35821823	35821823	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr21:35821823C>T	uc010gmp.2	-	2	540	c.110G>A	c.(109-111)AGC>AAC	p.S37N	KCNE1_uc002ytz.2_Missense_Mutation_p.S37N|KCNE1_uc010gmq.2_Missense_Mutation_p.S37N|KCNE1_uc010gmr.2_Missense_Mutation_p.S37N|KCNE1_uc010gms.2_Missense_Mutation_p.S37N|KCNE1_uc002yua.2_RNA	NM_001127670	NP_001121142	P15382	KCNE1_HUMAN	potassium voltage-gated channel, Isk-related	37					blood circulation|membrane depolarization|muscle contraction|sensory perception of sound	lysosome	delayed rectifier potassium channel activity|potassium channel regulator activity			ovary(2)	2					Indapamide(DB00808)	GCCGTCACTGCTGCGGGGGGA	0.607													30	35					0	0	1	0	0
BRWD1	54014	broad.mit.edu	37	21	40604406	40604406	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr21:40604406G>A	uc002yxk.1	-	24	2924	c.2785C>T	c.(2785-2787)CCA>TCA	p.P929S	BRWD1_uc010goc.1_5'UTR|BRWD1_uc002yxl.2_Missense_Mutation_p.P929S	NM_018963	NP_061836	Q9NSI6	BRWD1_HUMAN	bromodomain and WD repeat domain containing 1	929					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus				skin(3)|ovary(1)	4		Prostate(19;8.44e-08)|all_epithelial(19;0.223)				AGCTCTGCTGGAGTCATCCTC	0.398													45	40					0	0	1	0	0
DSCAM	1826	broad.mit.edu	37	21	41561041	41561041	+	Silent	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr21:41561041G>A	uc002yyq.1	-	12	2933	c.2481C>T	c.(2479-2481)ATC>ATT	p.I827I	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	827	Ig-like C2-type 9.|Extracellular (Potential).				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				CAGGGTTAATGATTCGGTCCT	0.512													55	88					0	0	1	0	0
TMPRSS3	64699	broad.mit.edu	37	21	43802292	43802292	+	Silent	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr21:43802292C>T	uc002zbb.2	-	9	1035	c.834G>A	c.(832-834)TTG>TTA	p.L278L	TMPRSS3_uc002zay.2_Silent_p.L36L|TMPRSS3_uc002zaz.2_Silent_p.L151L|TMPRSS3_uc002zba.2_Silent_p.L151L|TMPRSS3_uc002zbc.2_Silent_p.L278L|TMPRSS3_uc002zbd.2_Silent_p.L278L	NM_024022	NP_076927	P57727	TMPS3_HUMAN	transmembrane protease, serine 3 isoform 1	278	Peptidase S1.|Extracellular (Potential).				cellular sodium ion homeostasis|proteolysis	endoplasmic reticulum membrane|integral to membrane	scavenger receptor activity|serine-type endopeptidase activity|sodium channel regulator activity			ovary(2)|breast(1)	3						CTGGATTGTCCAACAGGGAAA	0.522													18	39					0	0	1	0	0
TMPRSS3	64699	broad.mit.edu	37	21	43802299	43802299	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr21:43802299G>A	uc002zbb.2	-	9	1028	c.827C>T	c.(826-828)TCC>TTC	p.S276F	TMPRSS3_uc002zay.2_Missense_Mutation_p.S34F|TMPRSS3_uc002zaz.2_Missense_Mutation_p.S149F|TMPRSS3_uc002zba.2_Missense_Mutation_p.S149F|TMPRSS3_uc002zbc.2_Missense_Mutation_p.S276F|TMPRSS3_uc002zbd.2_Missense_Mutation_p.S276F	NM_024022	NP_076927	P57727	TMPS3_HUMAN	transmembrane protease, serine 3 isoform 1	276	Peptidase S1.|Extracellular (Potential).				cellular sodium ion homeostasis|proteolysis	endoplasmic reticulum membrane|integral to membrane	scavenger receptor activity|serine-type endopeptidase activity|sodium channel regulator activity			ovary(2)|breast(1)	3						GTCCAACAGGGAAACTAGACC	0.502													16	34					0	0	1	0	0
TRPM2	7226	broad.mit.edu	37	21	45821640	45821640	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr21:45821640C>T	uc002zet.1	+	17	2611	c.2398C>T	c.(2398-2400)CAC>TAC	p.H800Y	TRPM2_uc002zeu.1_Missense_Mutation_p.H800Y|TRPM2_uc002zew.1_Missense_Mutation_p.H800Y|TRPM2_uc010gpt.1_Missense_Mutation_p.H800Y|TRPM2_uc002zex.1_Missense_Mutation_p.H586Y|TRPM2_uc002zey.1_Missense_Mutation_p.H313Y	NM_003307	NP_003298	O94759	TRPM2_HUMAN	transient receptor potential cation channel,	800	Helical; (Potential).					integral to plasma membrane	ADP-ribose diphosphatase activity|calcium channel activity|sodium channel activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3						GGTGGTCTTCCACCTGAACAT	0.642													124	154					0	0	1	0	0
KRTAP12-3	386683	broad.mit.edu	37	21	46078006	46078007	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr21:46078006_46078007CC>TT	uc002zft.2	+	1	158_159	c.110_111CC>TT	c.(109-111)CCC>CTT	p.P37L	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198697	NP_941970	P60328	KR123_HUMAN	keratin associated protein 12-3	37	5.|14 X 5 AA approximate repeats.					intermediate filament				central_nervous_system(1)	1						GTGTGCATGCCCGTGAGCTGCA	0.649													55	97					0	0	1	0	0
IL17RA	23765	broad.mit.edu	37	22	17590562	17590562	+	Missense_Mutation	SNP	A	C	C			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr22:17590562A>C	uc002zly.2	+	13	2586	c.2453A>C	c.(2452-2454)GAG>GCG	p.E818A	IL17RA_uc010gqt.2_Missense_Mutation_p.E766A	NM_014339	NP_055154	Q96F46	I17RA_HUMAN	interleukin 17A receptor precursor	818	Cytoplasmic (Potential).|Poly-Glu.				fibroblast activation|positive regulation of interleukin-23 production	integral to plasma membrane	interleukin-17 receptor activity			skin(2)	2		all_epithelial(15;0.0181)|Lung NSC(13;0.109)|all_lung(157;0.132)		Colorectal(9;0.241)		GAGGAAGAGGAGCAGGACCCA	0.652													5	9					0	0	1	0	0
MICAL3	57553	broad.mit.edu	37	22	18370137	18370137	+	Silent	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr22:18370137G>A	uc002zng.3	-	14	2309	c.1956C>T	c.(1954-1956)TCC>TCT	p.S652S	MICAL3_uc011agl.1_Silent_p.S652S|MICAL3_uc002znh.2_Silent_p.S652S|MICAL3_uc002znj.1_Silent_p.S352S|MICAL3_uc002znk.1_Silent_p.S652S|MICAL3_uc002znl.1_Silent_p.S285S|MICAL3_uc002znm.2_Silent_p.S153S|MICAL3_uc010grf.2_Silent_p.S652S	NM_015241	NP_056056	Q7RTP6	MICA3_HUMAN	microtubule associated monoxygenase, calponin	652						cytoplasm|cytoskeleton	monooxygenase activity|zinc ion binding				0		all_epithelial(15;0.198)		Lung(27;0.0427)		TGCTTAGGAAGGAGATAGGGG	0.507													17	19					0	0	1	0	0
GNB1L	54584	broad.mit.edu	37	22	19776423	19776423	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr22:19776423G>A	uc002zqe.1	-	7	1187	c.793C>T	c.(793-795)CGC>TGC	p.R265C	GNB1L_uc002zqd.1_Missense_Mutation_p.R121C|GNB1L_uc002zqf.1_Missense_Mutation_p.R265C	NM_053004	NP_443730	Q9BYB4	GNB1L_HUMAN	guanine nucleotide binding protein	265	WD 5.				G-protein coupled receptor protein signaling pathway|intracellular signal transduction	internal side of plasma membrane|intracellular				breast(1)	1	Colorectal(54;0.0993)					AGGATCTTGCGATCTGGCCGG	0.642													34	41					0	0	1	0	0
SGSM1	129049	broad.mit.edu	37	22	25272586	25272586	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr22:25272586C>T	uc003abg.2	+	14	1656	c.1499C>T	c.(1498-1500)TCC>TTC	p.S500F	SGSM1_uc003abh.2_Missense_Mutation_p.S500F|SGSM1_uc010guu.1_Missense_Mutation_p.S445F|SGSM1_uc003abj.2_Missense_Mutation_p.S445F|SGSM1_uc003abi.1_Missense_Mutation_p.S420F	NM_001039948	NP_001035037	Q2NKQ1	SGSM1_HUMAN	RUN and TBC1 domain containing 2 isoform 1	500						Golgi apparatus	Rab GTPase activator activity			ovary(2)|central_nervous_system(2)|pancreas(1)	5						AACCTCCCATCCCTGTGGCAG	0.557													82	88					0	0	1	0	0
MYO18B	84700	broad.mit.edu	37	22	26164992	26164992	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr22:26164992G>A	uc003abz.1	+	4	1359	c.1109G>A	c.(1108-1110)AGA>AAA	p.R370K	MYO18B_uc003aca.1_Missense_Mutation_p.R251K|MYO18B_uc010guy.1_Missense_Mutation_p.R251K|MYO18B_uc010guz.1_Missense_Mutation_p.R251K|MYO18B_uc011aka.1_5'UTR|MYO18B_uc011akb.1_5'Flank	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	370						nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						GACGATCTGAGAATGGGGGAG	0.562													5	13					0	0	1	0	0
MYO18B	84700	broad.mit.edu	37	22	26422479	26422479	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr22:26422479C>T	uc003abz.1	+	43	6789	c.6539C>T	c.(6538-6540)ACC>ATC	p.T2180I	MYO18B_uc003aca.1_Missense_Mutation_p.T2061I|MYO18B_uc010guy.1_Missense_Mutation_p.T2062I|MYO18B_uc010guz.1_Missense_Mutation_p.T2060I|MYO18B_uc011aka.1_Missense_Mutation_p.T1334I|MYO18B_uc011akb.1_Missense_Mutation_p.T1693I|MYO18B_uc010gva.1_Missense_Mutation_p.T163I|MYO18B_uc010gvb.1_RNA	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	2180						nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						GCCCGGTCCACCAATGTCCAC	0.547													67	69					0	0	1	0	0
RNF185	91445	broad.mit.edu	37	22	31600560	31600560	+	Silent	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr22:31600560C>T	uc003akb.2	+	7	767	c.567C>T	c.(565-567)CTC>CTT	p.L189L	RNF185_uc010gwh.2_RNA|RNF185_uc011alm.1_Silent_p.L127L|RNF185_uc003akc.2_Silent_p.L127L|RNF185_uc003ake.2_Silent_p.L133L	NM_152267	NP_689480	Q96GF1	RN185_HUMAN	ring finger protein 185 isoform 1	189	Helical; (Potential).					integral to membrane	zinc ion binding				0						TGTTCTGGCTCCTGATTGCCT	0.567													31	38					0	0	1	0	0
SLC5A1	6523	broad.mit.edu	37	22	32498182	32498182	+	Silent	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr22:32498182C>T	uc003amc.2	+	13	1855	c.1623C>T	c.(1621-1623)ATC>ATT	p.I541I	SLC5A1_uc011alz.1_Silent_p.I414I	NM_000343	NP_000334	P13866	SC5A1_HUMAN	solute carrier family 5 (sodium/glucose	541	Helical; (Potential).				carbohydrate metabolic process	integral to plasma membrane	glucose:sodium symporter activity|protein binding			skin(1)	1						TCATCACCATCGTGGTCATCT	0.488													71	133					0	0	1	0	0
SYN3	8224	broad.mit.edu	37	22	32924957	32924957	+	Silent	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr22:32924957C>T	uc003amx.2	-	10	1293	c.1134G>A	c.(1132-1134)GTG>GTA	p.V378V	SYN3_uc003amy.2_Silent_p.V378V|SYN3_uc003amz.2_Silent_p.V377V|SYN3_uc011amc.1_Silent_p.V12V	NM_003490	NP_003481	O14994	SYN3_HUMAN	synapsin III isoform IIIa	378	C; actin-binding and synaptic-vesicle binding.				neurotransmitter secretion	cell junction|synaptic vesicle membrane	ATP binding|ligase activity			skin(1)	1						TGTCCTCTTCCACATGCTCTC	0.597											OREG0026488	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	34	43					0	0	1	0	0
APOL1	8542	broad.mit.edu	37	22	36661890	36661890	+	Silent	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr22:36661890G>A	uc003apf.2	+	6	1176	c.1008G>A	c.(1006-1008)ACG>ACA	p.T336T	APOL1_uc011amn.1_Silent_p.T213T|APOL1_uc003apc.2_RNA|APOL1_uc003ape.2_Silent_p.T352T|APOL1_uc011amo.1_Silent_p.T213T|APOL1_uc011amp.1_Silent_p.T336T|APOL1_uc011amq.1_Silent_p.T318T|APOL1_uc010gwx.2_Silent_p.T213T	NM_003661	NP_003652	O14791	APOL1_HUMAN	apolipoprotein L1 isoform a precursor	336					cholesterol metabolic process|cytolysis|innate immune response|killing of cells of other organism|lipid transport|lipoprotein metabolic process	high-density lipoprotein particle|very-low-density lipoprotein particle	chloride channel activity|lipid binding|protein binding			breast(2)|ovary(1)	3						TCAAGCTCACGGATGTGGCCC	0.532													19	27					0	0	1	0	0
MYH9	4627	broad.mit.edu	37	22	36680290	36680290	+	Silent	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr22:36680290G>A	uc003apg.2	-	40	5845	c.5614C>T	c.(5614-5616)CTG>TTG	p.L1872L		NM_002473	NP_002464	P35579	MYH9_HUMAN	myosin, heavy polypeptide 9, non-muscle	1872	Potential.				actin cytoskeleton reorganization|actin filament-based movement|angiogenesis|axon guidance|blood vessel endothelial cell migration|cytokinesis|integrin-mediated signaling pathway|leukocyte migration|membrane protein ectodomain proteolysis|monocyte differentiation|platelet formation|protein transport|regulation of cell shape	actomyosin contractile ring|cleavage furrow|cytosol|myosin complex|nucleus|ruffle|stress fiber|uropod	actin filament binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|microfilament motor activity|protein anchor|protein homodimerization activity			breast(3)|ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|lung(1)|skin(1)|kidney(1)|pancreas(1)	11						AGCTGCTTCAGGCGGGTAGAT	0.701			T	ALK	ALCL		Deafness|autosomal dominant 17|Epstein syndrome|Fechtner syndrome|May-Hegglin anomaly|Sebastian syndrome		Hereditary_Macrothrombocytopenia_MYH9-associated				5	9					0	0	1	0	0
ENTHD1	150350	broad.mit.edu	37	22	40257788	40257788	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr22:40257788C>T	uc003ayg.2	-	3	825	c.574G>A	c.(574-576)GGA>AGA	p.G192R		NM_152512	NP_689725	Q8IYW4	ENTD1_HUMAN	ENTH domain containing 1	192										ovary(2)|skin(1)	3	Melanoma(58;0.0749)					TGTAACCTTCCAAACTTAGGA	0.313													20	18					0	0	1	0	0
KIAA1644	85352	broad.mit.edu	37	22	44681376	44681376	+	Silent	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr22:44681376C>T	uc003bet.2	-	4	664	c.531G>A	c.(529-531)CAG>CAA	p.Q177Q		NM_001099294	NP_001092764	Q3SXP7	K1644_HUMAN	hypothetical protein LOC85352 precursor	177	Cytoplasmic (Potential).					integral to membrane				ovary(1)	1		all_neural(38;0.0762)|Ovarian(80;0.105)|Glioma(61;0.222)				TGTGCACGGCCTGTGGGGCTT	0.682													61	58					0	0	1	0	0
PPARA	5465	broad.mit.edu	37	22	46627847	46627847	+	Silent	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr22:46627847C>T	uc003bgw.1	+	8	1136	c.870C>T	c.(868-870)TTC>TTT	p.F290F	PPARA_uc003bgx.1_Silent_p.F290F|PPARA_uc010hab.1_Silent_p.F290F|PPARA_uc003bhb.1_Silent_p.F290F|PPARA_uc010hac.1_Silent_p.F87F	NM_005036	NP_005027	Q07869	PPARA_HUMAN	peroxisome proliferative activated receptor,	290	Ligand-binding.				fatty acid metabolic process|fatty acid transport|negative regulation of appetite|negative regulation of cholesterol storage|negative regulation of macrophage derived foam cell differentiation|negative regulation of receptor biosynthetic process|negative regulation of sequestering of triglyceride|negative regulation of transcription from RNA polymerase II promoter|positive regulation of fatty acid beta-oxidation|regulation of cellular ketone metabolic process by positive regulation of transcription from an RNA polymerase II promoter|regulation of glycolysis by positive regulation of transcription from an RNA polymerase II promoter|regulation of lipid transport by positive regulation of transcription from an RNA polymerase II promoter|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	drug binding|ligand-regulated transcription factor activity|lipid binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|ubiquitin conjugating enzyme binding|zinc ion binding			ovary(1)|central_nervous_system(1)	2		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00522)	Atorvastatin(DB01076)|Bezafibrate(DB01393)|Clofibrate(DB00636)|Fenofibrate(DB01039)|Gemfibrozil(DB01241)|Simvastatin(DB00641)	TCACGGAATTCGCCAAGGCCA	0.542													32	25					0	0	1	0	0
TTLL8	164714	broad.mit.edu	37	22	50472774	50472774	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr22:50472774C>T	uc011ark.1	-	9	1039	c.1039G>A	c.(1039-1041)GAC>AAC	p.D347N		NM_001080447	NP_001073916			tubulin tyrosine ligase-like family, member 8											ovary(2)	2		all_cancers(38;3.44e-07)|all_epithelial(38;2.44e-06)|all_lung(38;0.00141)|Breast(42;0.00519)|Lung NSC(38;0.0199)|Ovarian(80;0.142)|Lung SC(80;0.162)		READ - Rectum adenocarcinoma(2;0.000882)|Colorectal(2;0.00311)|BRCA - Breast invasive adenocarcinoma(115;0.226)		GCATCCGCACCAGGGGACTCA	0.612													10	19					0	0	1	0	0
MOV10L1	54456	broad.mit.edu	37	22	50552817	50552817	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr22:50552817G>A	uc003bjj.2	+	7	975	c.892G>A	c.(892-894)GGA>AGA	p.G298R	MOV10L1_uc003bjk.3_Missense_Mutation_p.G298R|MOV10L1_uc011arp.1_Missense_Mutation_p.G278R|MOV10L1_uc011arq.1_Missense_Mutation_p.G59R|MOV10L1_uc010hao.1_RNA	NM_018995	NP_061868	Q9BXT6	M10L1_HUMAN	MOV10-like 1 isoform 1	298					germ cell development|multicellular organismal development|spermatogenesis		ATP binding|ATP-dependent RNA helicase activity|magnesium ion binding|RNA binding			ovary(2)|skin(1)	3		all_cancers(38;3.31e-11)|all_epithelial(38;5.69e-10)|all_lung(38;3.73e-05)|Breast(42;0.000525)|Lung NSC(38;0.000954)|Ovarian(80;0.0367)|Lung SC(80;0.114)		LUAD - Lung adenocarcinoma(64;0.0215)|BRCA - Breast invasive adenocarcinoma(115;0.24)		CAGGAATAAAGGAGACATTCC	0.368													14	21					0	0	1	0	0
ATP2B2	491	broad.mit.edu	37	3	10382301	10382301	+	Missense_Mutation	SNP	A	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr3:10382301A>T	uc003bvt.2	-	20	3444	c.3005T>A	c.(3004-3006)TTC>TAC	p.F1002Y	ATP2B2_uc003bvv.2_Missense_Mutation_p.F957Y|ATP2B2_uc003bvw.2_Missense_Mutation_p.F957Y|ATP2B2_uc010hdo.2_Missense_Mutation_p.F707Y	NM_001001331	NP_001001331	Q01814	AT2B2_HUMAN	plasma membrane calcium ATPase 2 isoform 1	1002	Helical; (Potential).				ATP biosynthetic process|cytosolic calcium ion homeostasis|platelet activation	cytosol|integral to membrane|plasma membrane	ATP binding|ATP binding|calcium ion binding|calcium-transporting ATPase activity|calcium-transporting ATPase activity|calmodulin binding|calmodulin binding|metal ion binding|PDZ domain binding|protein C-terminus binding			ovary(3)|skin(2)|central_nervous_system(1)	6						CATCATGACGAAGGTGTTGAA	0.552													76	90					0	0	1	0	0
ATP2B2	491	broad.mit.edu	37	3	10387752	10387752	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr3:10387752C>T	uc003bvt.2	-	17	2913	c.2474G>A	c.(2473-2475)GGG>GAG	p.G825E	ATP2B2_uc003bvv.2_Missense_Mutation_p.G780E|ATP2B2_uc003bvw.2_Missense_Mutation_p.G780E|ATP2B2_uc010hdo.2_Missense_Mutation_p.G530E	NM_001001331	NP_001001331	Q01814	AT2B2_HUMAN	plasma membrane calcium ATPase 2 isoform 1	825	Cytoplasmic (Potential).				ATP biosynthetic process|cytosolic calcium ion homeostasis|platelet activation	cytosol|integral to membrane|plasma membrane	ATP binding|ATP binding|calcium ion binding|calcium-transporting ATPase activity|calcium-transporting ATPase activity|calmodulin binding|calmodulin binding|metal ion binding|PDZ domain binding|protein C-terminus binding			ovary(3)|skin(2)|central_nervous_system(1)	6						GAGTGCAGGCCCGTCGTTGGT	0.657													23	24					0	0	1	0	0
ATP2B2	491	broad.mit.edu	37	3	10430008	10430008	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr3:10430008G>A	uc003bvt.2	-	6	1299	c.860C>T	c.(859-861)ACC>ATC	p.T287I	ATP2B2_uc003bvv.2_Missense_Mutation_p.T287I|ATP2B2_uc003bvw.2_Missense_Mutation_p.T287I|ATP2B2_uc010hdp.2_Missense_Mutation_p.T287I|ATP2B2_uc010hdo.2_Missense_Mutation_p.T23I	NM_001001331	NP_001001331	Q01814	AT2B2_HUMAN	plasma membrane calcium ATPase 2 isoform 1	287	Cytoplasmic (Potential).				ATP biosynthetic process|cytosolic calcium ion homeostasis|platelet activation	cytosol|integral to membrane|plasma membrane	ATP binding|ATP binding|calcium ion binding|calcium-transporting ATPase activity|calcium-transporting ATPase activity|calmodulin binding|calmodulin binding|metal ion binding|PDZ domain binding|protein C-terminus binding			ovary(3)|skin(2)|central_nervous_system(1)	6						CCCCAGGAGGGTAAAGATGAT	0.522													115	150					0	0	1	0	0
TSEN2	80746	broad.mit.edu	37	3	12545048	12545048	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr3:12545048G>A	uc003bxc.2	+	5	983	c.596G>A	c.(595-597)TGC>TAC	p.C199Y	TSEN2_uc003bwy.2_Missense_Mutation_p.C199Y|TSEN2_uc003bwz.2_Intron|TSEN2_uc003bxa.2_Missense_Mutation_p.C199Y|TSEN2_uc011auq.1_Missense_Mutation_p.C199Y|TSEN2_uc003bxb.2_Missense_Mutation_p.C199Y|TSEN2_uc011aur.1_Missense_Mutation_p.C108Y	NM_025265	NP_079541	Q8NCE0	SEN2_HUMAN	tRNA-intron nuclease 2 isoform 1	199					mRNA processing|tRNA splicing, via endonucleolytic cleavage and ligation	cytoplasm|nucleolus|tRNA-intron endonuclease complex	nucleic acid binding|tRNA-intron endonuclease activity			central_nervous_system(1)	1						GGCTCTGGCTGCCACCCAACA	0.577													11	20					0	0	1	0	0
TRANK1	9881	broad.mit.edu	37	3	36893258	36893258	+	Silent	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr3:36893258G>A	uc003cgj.2	-	5	3359	c.3057C>T	c.(3055-3057)GGC>GGT	p.G1019G		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	1569					DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						CAAATTCTAAGCCTTTTGCTT	0.363													6	6					0	0	1	0	0
SCN10A	6336	broad.mit.edu	37	3	38768322	38768323	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr3:38768322_38768323GG>AA	uc003ciq.2	-	16	2861_2862	c.2861_2862CC>TT	c.(2860-2862)TCC>TTT	p.S954F		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	954					sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	CCTTGGAGCTGGAGAGTGGGAG	0.604													24	30					0	0	1	0	0
SCN11A	11280	broad.mit.edu	37	3	38889194	38889194	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr3:38889194G>A	uc011ays.1	-	26	4566	c.4367C>T	c.(4366-4368)CCT>CTT	p.P1456L		NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	1456	IV.				response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	CGGAGGGAAAGGAATGTGCTC	0.498													12	15					0	0	1	0	0
TRAK1	22906	broad.mit.edu	37	3	42264711	42264711	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr3:42264711C>T	uc003cky.2	+	16	2560	c.2344C>T	c.(2344-2346)CCG>TCG	p.P782S	TRAK1_uc011azi.1_Missense_Mutation_p.P761S	NM_001042646	NP_001036111	Q9UPV9	TRAK1_HUMAN	OGT(O-Glc-NAc transferase)-interacting protein	782					endosome to lysosome transport|protein O-linked glycosylation|protein targeting|regulation of transcription from RNA polymerase II promoter	early endosome|mitochondrion|nucleus				ovary(1)	1						CCCCTCTACTCCGCCGAACTC	0.622													19	39					0	0	1	0	0
CXCR6	10663	broad.mit.edu	37	3	45988228	45988228	+	Silent	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr3:45988228C>T	uc003cpc.1	+	2	336	c.255C>T	c.(253-255)CCC>CCT	p.P85P	FYCO1_uc003cpb.3_Intron|FYCO1_uc011bal.1_Intron|CXCR6_uc010hix.1_Silent_p.P85P	NM_006564	NP_006555	O00574	CXCR6_HUMAN	G protein-coupled receptor TYMSTR	85	Helical; Name=2; (Potential).				viral genome replication	integral to plasma membrane	coreceptor activity			skin(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.00113)|KIRC - Kidney renal clear cell carcinoma(197;0.0172)|Kidney(197;0.0203)		GCACTCTGCCCTTCTGGGCCT	0.517													76	83					0	0	1	0	0
MIR1226	100302232	broad.mit.edu	37	3	47891084	47891084	+	RNA	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr3:47891084C>T	hsa-mir-1226|MI0006313	+			c.40C>T			DHX30_uc003crt.2_Intron|DHX30_uc003cru.2_Intron																	0						CTGGGATGGTCCAAAAGGGTG	0.572													21	23					0	0	1	0	0
COL7A1	1294	broad.mit.edu	37	3	48619779	48619779	+	Missense_Mutation	SNP	G	A	A	rs149711883	byFrequency	TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr3:48619779G>A	uc003ctz.2	-	46	4613	c.4612C>T	c.(4612-4614)CGC>TGC	p.R1538C		NM_000094	NP_000085	Q02388	CO7A1_HUMAN	alpha 1 type VII collagen precursor	1538	Triple-helical region.				cell adhesion|epidermis development	basement membrane|collagen type VII	protein binding|serine-type endopeptidase inhibitor activity			ovary(4)|breast(3)|skin(3)|central_nervous_system(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		TCCCCAGGGCGACCAGGCTCC	0.607													56	79					0	0	1	0	0
MUSTN1	389125	broad.mit.edu	37	3	52867661	52867661	+	Silent	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr3:52867661G>A	uc003dga.3	-	2	370	c.114C>T	c.(112-114)TCC>TCT	p.S38S	ITIH4_uc011bem.1_5'Flank|ITIH4_uc011ben.1_5'Flank|ITIH4_uc003dfz.2_5'Flank|ITIH4_uc010hmp.1_5'Flank|MUSTN1_uc010hmq.1_RNA|MUSTN1_uc003dgb.3_Nonsense_Mutation_p.Q142*|TMEM110_uc003dgc.3_Silent_p.S328S	NM_205853	NP_995325	Q8IVN3	MSTN1_HUMAN	musculoskeletal, embryonic nuclear protein 1	38											0				BRCA - Breast invasive adenocarcinoma(193;6.56e-05)|Kidney(197;0.000586)|KIRC - Kidney renal clear cell carcinoma(197;0.000755)|OV - Ovarian serous cystadenocarcinoma(275;0.0471)		GGTAGGTCTTGGACTTGATTT	0.602													10	5					0	0	1	0	0
IL17RD	54756	broad.mit.edu	37	3	57143616	57143616	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr3:57143616G>A	uc003dil.2	-	5	588	c.499C>T	c.(499-501)CCT>TCT	p.P167S	IL17RD_uc003dik.2_Missense_Mutation_p.P143S|IL17RD_uc010hna.2_Missense_Mutation_p.P23S|IL17RD_uc011bex.1_Missense_Mutation_p.P23S	NM_017563	NP_060033	Q8NFM7	I17RD_HUMAN	interleukin 17 receptor D precursor	167	Extracellular (Potential).					Golgi membrane|integral to membrane|plasma membrane	receptor activity				0				KIRC - Kidney renal clear cell carcinoma(284;0.0173)|Kidney(284;0.0204)		TTAATGGAAGGAAAAGGGACA	0.408													25	28					0	0	1	0	0
LMOD3	56203	broad.mit.edu	37	3	69168212	69168212	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr3:69168212C>T	uc003dns.2	-	2	1503	c.1294G>A	c.(1294-1296)GAG>AAG	p.E432K	LMOD3_uc003dnt.2_Missense_Mutation_p.E432K	NM_198271	NP_938012	Q0VAK6	LMOD3_HUMAN	leiomodin 3 (fetal)	432						cytoplasm|cytoskeleton	tropomyosin binding			ovary(1)	1		Lung NSC(201;0.0193)|Prostate(884;0.174)		BRCA - Breast invasive adenocarcinoma(55;7.88e-05)|Epithelial(33;0.000839)|LUSC - Lung squamous cell carcinoma(21;0.0119)|Lung(16;0.0191)|KIRC - Kidney renal clear cell carcinoma(39;0.205)|Kidney(39;0.24)		CCCAACAGCTCCCACATCCCA	0.547													29	40					0	0	1	0	0
CNTN3	5067	broad.mit.edu	37	3	74418350	74418350	+	Silent	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr3:74418350G>A	uc003dpm.1	-	7	1016	c.936C>T	c.(934-936)CTC>CTT	p.L312L		NM_020872	NP_065923	Q9P232	CNTN3_HUMAN	contactin 3 precursor	312	Ig-like C2-type 3.				cell adhesion	anchored to membrane|plasma membrane	protein binding			breast(3)|ovary(1)|skin(1)	5		Lung NSC(201;0.138)|Lung SC(41;0.21)		Epithelial(33;0.00212)|BRCA - Breast invasive adenocarcinoma(55;0.00258)|LUSC - Lung squamous cell carcinoma(21;0.00461)|Lung(16;0.01)		CATAGTAAGTGAGACGCCCTC	0.413													8	22					0	0	1	0	0
OR5AC2	81050	broad.mit.edu	37	3	97806585	97806585	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr3:97806585C>T	uc011bgs.1	+	1	569	c.569C>T	c.(568-570)TCA>TTA	p.S190L		NM_054106	NP_473447	Q9NZP5	O5AC2_HUMAN	olfactory receptor, family 5, subfamily AC,	190	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						TTCAAAATTTCATGCAATGGT	0.313													17	28					0	0	1	0	0
OR5H2	79310	broad.mit.edu	37	3	98002110	98002110	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr3:98002110C>T	uc003dsj.1	+	1	379	c.379C>T	c.(379-381)CGC>TGC	p.R127C		NM_001005482	NP_001005482	Q8NGV7	OR5H2_HUMAN	olfactory receptor, family 5, subfamily H,	127	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)	3						GGCATATGATCGCTATGTAGC	0.378													31	48					0	0	1	0	0
OR5H2	79310	broad.mit.edu	37	3	98002435	98002435	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr3:98002435C>T	uc003dsj.1	+	1	704	c.704C>T	c.(703-705)TCT>TTT	p.S235F		NM_001005482	NP_001005482	Q8NGV7	OR5H2_HUMAN	olfactory receptor, family 5, subfamily H,	235	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)	3						AAAAAGAAGTCTGTTAGAGGC	0.388													12	19					0	0	1	0	0
GPR15	2838	broad.mit.edu	37	3	98250908	98250908	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr3:98250908G>A	uc011bgy.1	+	1	31	c.31G>A	c.(31-33)GAT>AAT	p.D11N		NM_005290	NP_005281	P49685	GPR15_HUMAN	G protein-coupled receptor 15	11	Extracellular (Potential).					integral to plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			ovary(1)	1		Lung NSC(201;7.93e-06)|all_neural(597;0.00172)|Hepatocellular(537;0.00825)|Myeloproliferative disorder(1037;0.0255)		Lung(72;0.246)		AGTTTATTTGGATTATTACTA	0.403													20	27					0	0	1	0	0
MORC1	27136	broad.mit.edu	37	3	108688571	108688571	+	Splice_Site	SNP	T	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr3:108688571T>A	uc003dxl.2	-	26	2638	c.2551_splice	c.e26-1	p.L851_splice	MORC1_uc011bhn.1_Splice_Site_p.L830_splice	NM_014429	NP_055244	Q86VD1	MORC1_HUMAN	MORC family CW-type zinc finger 1						cell differentiation|multicellular organismal development|spermatogenesis	nucleus	ATP binding|zinc ion binding			ovary(3)|skin(3)|breast(2)	8						CTGCTCCAGCTGTTTTCATAA	0.358													31	29					0	0	1	0	0
PHLDB2	90102	broad.mit.edu	37	3	111603475	111603475	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr3:111603475C>T	uc010hqa.2	+	2	962	c.551C>T	c.(550-552)TCC>TTC	p.S184F	PHLDB2_uc003dyc.2_Missense_Mutation_p.S211F|PHLDB2_uc003dyd.2_Missense_Mutation_p.S184F|PHLDB2_uc003dyg.2_Missense_Mutation_p.S184F|PHLDB2_uc003dyh.2_Missense_Mutation_p.S184F|PHLDB2_uc003dye.3_Missense_Mutation_p.S184F|PHLDB2_uc003dyf.3_Missense_Mutation_p.S184F	NM_001134438	NP_001127910	Q86SQ0	PHLB2_HUMAN	pleckstrin homology-like domain, family B,	184						cytoplasm|intermediate filament cytoskeleton|plasma membrane				ovary(4)|skin(2)	6						AATGGAAGTTCCCTGAGTGAT	0.547													23	35					0	0	1	0	0
ZDHHC23	254887	broad.mit.edu	37	3	113672889	113672889	+	Silent	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr3:113672889C>T	uc003eau.2	+	3	803	c.504C>T	c.(502-504)CCC>CCT	p.P168P	ZDHHC23_uc003eav.2_Silent_p.P162P	NM_173570	NP_775841	Q8IYP9	ZDH23_HUMAN	zinc finger, DHHC domain containing 23	168	Helical; (Potential).					integral to membrane	acyltransferase activity|zinc ion binding			ovary(2)	2						GTGTGGGTCCCGTTCAGCTGG	0.527													69	70					0	0	1	0	0
ZDHHC23	254887	broad.mit.edu	37	3	113673215	113673215	+	Missense_Mutation	SNP	T	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr3:113673215T>A	uc003eau.2	+	3	1129	c.830T>A	c.(829-831)ATA>AAA	p.I277K	ZDHHC23_uc003eav.2_Missense_Mutation_p.I271K	NM_173570	NP_775841	Q8IYP9	ZDH23_HUMAN	zinc finger, DHHC domain containing 23	277	DHHC-type.					integral to membrane	acyltransferase activity|zinc ion binding			ovary(2)	2						CACTGCCGGATATGTGGCATC	0.512													11	9					0	0	1	0	0
DIRC2	84925	broad.mit.edu	37	3	122591385	122591385	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr3:122591385C>T	uc003efw.3	+	8	1401	c.1262C>T	c.(1261-1263)ACT>ATT	p.T421I	DIRC2_uc010hrl.2_RNA|DIRC2_uc010hrm.2_Missense_Mutation_p.T259I	NM_032839	NP_116228	Q96SL1	DIRC2_HUMAN	disrupted in renal carcinoma 2	421	Helical; (Potential).				transport	integral to membrane					0				GBM - Glioblastoma multiforme(114;0.0614)		GGAGTTGTCACTTTTTTAAGT	0.323													22	20					0	0	1	0	0
KLF15	28999	broad.mit.edu	37	3	126062715	126062715	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr3:126062715G>A	uc011bkk.1	-	3	1288	c.1106C>T	c.(1105-1107)TCG>TTG	p.S369L		NM_014079	NP_054798	Q9UIH9	KLF15_HUMAN	Kruppel-like factor 15	369	C2H2-type 2.					nucleus	DNA binding|zinc ion binding			lung(1)	1				GBM - Glioblastoma multiforme(114;0.147)		CCTGTGCCGCGACAGCTCGTC	0.667													13	5					0	0	1	0	0
UROC1	131669	broad.mit.edu	37	3	126222860	126222860	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr3:126222860C>T	uc003eiz.1	-	9	912	c.880G>A	c.(880-882)GAC>AAC	p.D294N	UROC1_uc010hsi.1_Missense_Mutation_p.D294N	NM_144639	NP_653240	Q96N76	HUTU_HUMAN	urocanase domain containing 1 isoform 1	294					histidine catabolic process	cytosol	urocanate hydratase activity			ovary(1)	1				GBM - Glioblastoma multiforme(114;0.17)		ATGCAGCGGTCCAAGCTGTCA	0.607													46	58					0	0	1	0	0
Unknown	0	broad.mit.edu	37	3	129130158	129130159	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr3:129130158_129130159GG>AA	uc003emg.2	-	5	1040_1041	c.877_878CC>TT	c.(877-879)CCG>TTG	p.P293L		NM_207307	NP_997190			hypothetical protein LOC90288																		CTTCTTGAGCGGACCCTTCAGG	0.574													34	55					0	0	1	0	0
KY	339855	broad.mit.edu	37	3	134322777	134322777	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr3:134322777C>T	uc010hty.2	-	11	1692	c.1630G>A	c.(1630-1632)GAA>AAA	p.E544K	KY_uc011blw.1_3'UTR|KY_uc011blx.1_Missense_Mutation_p.E523K	NM_178554	NP_848649	Q8NBH2	KY_HUMAN	kyphoscoliosis peptidase	544						cytoskeleton|Z disc	peptidase activity			ovary(2)	2						TTTCCTGGTTCCTGCCTCTTC	0.517													16	31					0	0	1	0	0
TRIM42	287015	broad.mit.edu	37	3	140397380	140397380	+	Silent	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr3:140397380C>T	uc003eto.1	+	1	500	c.309C>T	c.(307-309)TTC>TTT	p.F103F		NM_152616	NP_689829	Q8IWZ5	TRI42_HUMAN	tripartite motif-containing 42	103						intracellular	zinc ion binding			lung(2)|skin(2)|upper_aerodigestive_tract(1)|breast(1)|central_nervous_system(1)	7						TCATCACTTTCCACAAGGGCC	0.507													19	19					0	0	1	0	0
ATR	545	broad.mit.edu	37	3	142215958	142215958	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr3:142215958C>T	uc003eux.3	-	33	5757	c.5635G>A	c.(5635-5637)GAT>AAT	p.D1879N		NM_001184	NP_001175	Q13535	ATR_HUMAN	ataxia telangiectasia and Rad3 related protein	1879	FAT.				cell cycle|cellular response to gamma radiation|cellular response to UV|DNA damage checkpoint|DNA repair|DNA replication|multicellular organismal development|negative regulation of DNA replication|peptidyl-serine phosphorylation|positive regulation of DNA damage response, signal transduction by p53 class mediator|protein autophosphorylation|replicative senescence	PML body	ATP binding|DNA binding|MutLalpha complex binding|MutSalpha complex binding|protein serine/threonine kinase activity			lung(5)|skin(5)|breast(4)|ovary(3)|stomach(1)|central_nervous_system(1)|liver(1)	20						TTTAGAGAATCTTCTTGAGAA	0.453								Other_conserved_DNA_damage_response_genes					25	43					0	0	1	0	0
ZIC4	84107	broad.mit.edu	37	3	147114101	147114101	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr3:147114101C>T	uc003ewd.1	-	3	499	c.226G>A	c.(226-228)GAG>AAG	p.E76K	ZIC4_uc003ewc.1_Missense_Mutation_p.E6K|ZIC4_uc011bno.1_Missense_Mutation_p.E126K	NM_032153	NP_115529	Q8N9L1	ZIC4_HUMAN	zinc finger protein of the cerebellum 4	76						nucleus	DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|central_nervous_system(1)	2						GGGAAGGGCTCCGGCCGCGCG	0.716													3	6					0	0	1	0	0
COMMD2	51122	broad.mit.edu	37	3	149468623	149468623	+	Missense_Mutation	SNP	A	G	G			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr3:149468623A>G	uc003exk.2	-	4	291	c.244T>C	c.(244-246)TTC>CTC	p.F82L		NM_016094	NP_057178	Q86X83	COMD2_HUMAN	COMM domain containing 2	82							protein binding				0			LUSC - Lung squamous cell carcinoma(72;0.0378)|Lung(72;0.048)			GAGTCTTGGAAATCCAGTTCA	0.308													16	14					0	0	1	0	0
FAM194A	131831	broad.mit.edu	37	3	150421551	150421551	+	Silent	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr3:150421551C>T	uc003eyg.2	-	1	192	c.135G>A	c.(133-135)GAG>GAA	p.E45E	FAM194A_uc003eyh.2_Intron	NM_152394	NP_689607	Q7L0X2	F194A_HUMAN	hypothetical protein LOC131831	45	Glu-rich.									skin(2)|ovary(1)	3						ccacctcttcctcctcctcct	0.189													9	7					0	0	1	0	0
PPM1L	151742	broad.mit.edu	37	3	160786656	160786656	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr3:160786656G>A	uc003fdr.2	+	4	895	c.794G>A	c.(793-795)CGG>CAG	p.R265Q	PPM1L_uc003fds.2_Missense_Mutation_p.R86Q|PPM1L_uc003fdt.2_Missense_Mutation_p.R138Q|PPM1L_uc010hwf.2_RNA	NM_139245	NP_640338	Q5SGD2	PPM1L_HUMAN	protein phosphatase 1 (formerly 2C)-like	265	Cytoplasmic (Potential).|PP2C-like.				protein dephosphorylation|sphingolipid metabolic process	endoplasmic reticulum membrane|integral to membrane|protein serine/threonine phosphatase complex	metal ion binding|protein serine/threonine phosphatase activity			breast(1)	1			Lung(72;0.00149)|LUSC - Lung squamous cell carcinoma(72;0.00216)			GCCATGTCTCGGTCCCTGGGG	0.512													26	25					0	0	1	0	0
SI	6476	broad.mit.edu	37	3	164735374	164735374	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr3:164735374C>T	uc003fei.2	-	31	3783	c.3721G>A	c.(3721-3723)GAA>AAA	p.E1241K		NM_001041	NP_001032	P14410	SUIS_HUMAN	sucrase-isomaltase	1241	Sucrase.|Lumenal.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|brush border|Golgi apparatus|integral to membrane	carbohydrate binding|oligo-1,6-glucosidase activity|sucrose alpha-glucosidase activity			ovary(7)|upper_aerodigestive_tract(4)|skin(2)|pancreas(1)	14		Prostate(884;0.00314)|Melanoma(1037;0.0153)|all_neural(597;0.0199)			Acarbose(DB00284)	TCATATAATTCCCGAACCTCT	0.338										HNSCC(35;0.089)			26	21					0	0	1	0	0
SLITRK3	22865	broad.mit.edu	37	3	164906390	164906390	+	Silent	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr3:164906390G>A	uc003fej.3	-	2	2673	c.2229C>T	c.(2227-2229)ATC>ATT	p.I743I	SLITRK3_uc003fek.2_Silent_p.I743I	NM_014926	NP_055741	O94933	SLIK3_HUMAN	slit and trk like 3 protein precursor	743	Cytoplasmic (Potential).					integral to membrane		p.I743N(1)		ovary(6)|skin(3)|pancreas(1)	10						CCGGGTGGGGGATGTACTCAT	0.458										HNSCC(40;0.11)			41	66					0	0	1	0	0
SERPINI2	5276	broad.mit.edu	37	3	167183010	167183010	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr3:167183010C>T	uc003fer.1	-	4	908	c.850G>A	c.(850-852)GAA>AAA	p.E284K	SERPINI2_uc003fes.1_Missense_Mutation_p.E294K|SERPINI2_uc003fet.1_Missense_Mutation_p.E284K	NM_006217	NP_006208	O75830	SPI2_HUMAN	serpin peptidase inhibitor, clade I (pancpin),	284					cellular component movement|regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			skin(2)|urinary_tract(1)	3						AGGCTTATTTCTACTTCCTCT	0.378													25	27					0	0	1	0	0
MECOM	2122	broad.mit.edu	37	3	169099087	169099087	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr3:169099087G>A	uc011bpj.1	-	2	666	c.263C>T	c.(262-264)CCT>CTT	p.P88L	MECOM_uc003ffl.2_Missense_Mutation_p.P60L|MECOM_uc011bpk.1_Intron|MECOM_uc010hwn.2_Missense_Mutation_p.P88L|MECOM_uc011bpl.1_Missense_Mutation_p.P88L	NM_004991	NP_004982	Q03112	EVI1_HUMAN	MDS1 and EVI1 complex locus isoform c	Error:Variant_position_missing_in_Q03112_after_alignment					apoptosis|cell differentiation|hemopoietic stem cell proliferation|negative regulation of JNK cascade|negative regulation of programmed cell death|negative regulation of transcription, DNA-dependent|regulation of cell cycle	nuclear speck	DNA binding|protein binding|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(5)|skin(5)|upper_aerodigestive_tract(1)|central_nervous_system(1)|ovary(1)|pancreas(1)	14						TCCTGCCCCAGGCATATTTGA	0.483													45	78					0	0	1	0	0
SAMD7	344658	broad.mit.edu	37	3	169644647	169644647	+	Silent	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr3:169644647G>A	uc003fgd.2	+	6	864	c.597G>A	c.(595-597)GAG>GAA	p.E199E	SAMD7_uc003fge.2_Silent_p.E199E|SAMD7_uc011bpo.1_Silent_p.E100E	NM_182610	NP_872416	Q7Z3H4	SAMD7_HUMAN	sterile alpha motif domain containing 7	199										skin(1)	1	all_cancers(22;1.55e-22)|all_epithelial(15;2.41e-27)|all_lung(20;3.52e-17)|Lung NSC(18;1.44e-16)|Ovarian(172;0.000337)|Breast(254;0.169)		Lung(28;2.71e-13)|STAD - Stomach adenocarcinoma(35;0.0106)			GTGATGCTGAGAGTTCCAAAA	0.463													19	25					0	0	1	0	0
SLC2A2	6514	broad.mit.edu	37	3	170723214	170723214	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr3:170723214C>T	uc003fhe.1	-	7	1132	c.823G>A	c.(823-825)GAA>AAA	p.E275K	SLC2A2_uc003fhf.1_Missense_Mutation_p.E102K|SLC2A2_uc011bpu.1_Missense_Mutation_p.E148K	NM_000340	NP_000331	P11168	GTR2_HUMAN	solute carrier family 2 (facilitated glucose	275	Cytoplasmic (Potential).				carbohydrate metabolic process|cellular lipid metabolic process|endocrine pancreas development|energy reserve metabolic process|regulation of insulin secretion	integral to plasma membrane|membrane fraction	D-glucose transmembrane transporter activity			ovary(1)|central_nervous_system(1)	2	all_cancers(22;1.41e-19)|all_lung(20;1.59e-15)|Lung NSC(18;7.08e-15)|Ovarian(172;0.00197)|Breast(254;0.122)		LUSC - Lung squamous cell carcinoma(14;1.1e-14)|Lung(28;2.99e-14)			TTTCTCATTTCATTAATATCT	0.388													6	17					0	0	1	0	0
PEX5L	51555	broad.mit.edu	37	3	179537668	179537668	+	Missense_Mutation	SNP	T	C	C			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr3:179537668T>C	uc003fki.1	-	9	1049	c.919A>G	c.(919-921)ACC>GCC	p.T307A	PEX5L_uc011bqd.1_Missense_Mutation_p.T264A|PEX5L_uc011bqe.1_Missense_Mutation_p.T115A|PEX5L_uc011bqf.1_Missense_Mutation_p.T199A|PEX5L_uc003fkj.1_Missense_Mutation_p.T272A|PEX5L_uc010hxd.1_Missense_Mutation_p.T305A|PEX5L_uc011bqg.1_Missense_Mutation_p.T283A|PEX5L_uc011bqh.1_Missense_Mutation_p.T248A	NM_016559	NP_057643	Q8IYB4	PEX5R_HUMAN	peroxisomal biogenesis factor 5-like	307					protein import into peroxisome matrix|regulation of cAMP-mediated signaling	cytosol|peroxisomal membrane	peroxisome matrix targeting signal-1 binding			ovary(3)|large_intestine(1)	4	all_cancers(143;3.94e-14)|Ovarian(172;0.0338)|Breast(254;0.183)		OV - Ovarian serous cystadenocarcinoma(80;1.75e-26)|GBM - Glioblastoma multiforme(14;0.000518)			GCCGAGATGGTTACTTGGTTC	0.413													41	48					0	0	1	0	0
EVC2	132884	broad.mit.edu	37	4	5578067	5578067	+	Silent	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr4:5578067G>A	uc003gij.2	-	18	3226	c.3172C>T	c.(3172-3174)CTG>TTG	p.L1058L	EVC2_uc011bwb.1_Silent_p.L498L|EVC2_uc003gik.2_Silent_p.L978L	NM_147127	NP_667338	Q86UK5	LBN_HUMAN	limbin	1058	Potential.					integral to membrane				large_intestine(3)|ovary(2)	5						GGTTCGTTCAGAATCCCGGGC	0.622													23	31					0	0	1	0	0
GPR78	27201	broad.mit.edu	37	4	8584355	8584355	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr4:8584355C>T	uc003glk.2	+	2	1185	c.766C>T	c.(766-768)CCG>TCG	p.P256S	CPZ_uc003gll.2_RNA	NM_080819	NP_543009	Q96P69	GPR78_HUMAN	G protein-coupled receptor 78	256	Helical; Name=6; (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			central_nervous_system(4)|ovary(2)	6						CTGCTTTGCCCCGTATGTCAT	0.622													29	63					0	0	1	0	0
BOD1L	259282	broad.mit.edu	37	4	13603637	13603637	+	Silent	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr4:13603637G>A	uc003gmz.1	-	10	5004	c.4887C>T	c.(4885-4887)GAC>GAT	p.D1629D	BOD1L_uc010idr.1_Silent_p.D966D	NM_148894	NP_683692	Q8NFC6	BOD1L_HUMAN	biorientation of chromosomes in cell division	1629							DNA binding			ovary(5)|breast(1)	6						CAGCCAGTAGGTCTGCTGCTC	0.473													78	81					0	0	1	0	0
SLC34A2	10568	broad.mit.edu	37	4	25665876	25665876	+	Silent	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr4:25665876G>A	uc003grr.2	+	4	384	c.303G>A	c.(301-303)TTG>TTA	p.L101L	SLC34A2_uc003grs.2_Silent_p.L100L|SLC34A2_uc010iev.2_Silent_p.L100L	NM_006424	NP_006415	O95436	NPT2B_HUMAN	solute carrier family 34 (sodium phosphate),	101	Helical; Name=M1; (Potential).				cellular phosphate ion homeostasis	apical plasma membrane|brush border membrane|integral to plasma membrane	phosphate binding|sodium ion binding|sodium-dependent phosphate transmembrane transporter activity|sodium:phosphate symporter activity			skin(3)|ovary(1)|kidney(1)	5		Breast(46;0.0503)				TTGGGAGATTGATTTTACTTC	0.478													45	63					0	0	1	0	0
TLR10	81793	broad.mit.edu	37	4	38775831	38775831	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr4:38775831C>T	uc003gti.2	-	2	1760	c.1381G>A	c.(1381-1383)GAG>AAG	p.E461K	TLR10_uc003gtj.2_Missense_Mutation_p.E461K|TLR10_uc003gtk.2_Missense_Mutation_p.E461K	NM_030956	NP_112218	Q9BXR5	TLR10_HUMAN	toll-like receptor 10 precursor	461	LRR 13.|Extracellular (Potential).				inflammatory response|innate immune response|MyD88-dependent toll-like receptor signaling pathway	integral to membrane|plasma membrane	transmembrane receptor activity			lung(1)|breast(1)	2						TGAATAGTCTCTTTAGGTACA	0.348													33	38					0	0	1	0	0
ATP8A1	10396	broad.mit.edu	37	4	42454056	42454056	+	Silent	SNP	T	C	C			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr4:42454056T>C	uc003gwr.2	-	30	3070	c.2838A>G	c.(2836-2838)TTA>TTG	p.L946L	ATP8A1_uc003gwq.2_Silent_p.L172L|ATP8A1_uc003gws.2_Silent_p.L931L	NM_006095	NP_006086	Q9Y2Q0	AT8A1_HUMAN	ATPase, aminophospholipid transporter (APLT),	946	Helical; (Potential).				ATP biosynthetic process	chromaffin granule membrane|integral to membrane|plasma membrane	aminophospholipid transporter activity|ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|cation-transporting ATPase activity|magnesium ion binding|phospholipid-translocating ATPase activity			skin(2)|central_nervous_system(1)	3					Phosphatidylserine(DB00144)	AGAGGCCATTTAAACAATGAA	0.373													10	15					0	0	1	0	0
KCTD8	386617	broad.mit.edu	37	4	44177182	44177182	+	Silent	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr4:44177182C>T	uc003gwu.2	-	2	1331	c.1047G>A	c.(1045-1047)GGG>GGA	p.G349G		NM_198353	NP_938167	Q6ZWB6	KCTD8_HUMAN	potassium channel tetramerisation domain	349						cell junction|postsynaptic membrane|presynaptic membrane|voltage-gated potassium channel complex	voltage-gated potassium channel activity			central_nervous_system(2)|ovary(1)	3						TACAGGAAGTCCCACTTTCAC	0.468										HNSCC(17;0.042)			18	32					0	0	1	0	0
CSN2	1447	broad.mit.edu	37	4	70823387	70823387	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr4:70823387G>A	uc003hes.3	-	5	293	c.280C>T	c.(280-282)CCT>TCT	p.P94S	CSN2_uc003het.3_Missense_Mutation_p.P93S	NM_001891	NP_001882	P05814	CASB_HUMAN	casein beta precursor	94					calcium ion transport	extracellular region	calcium ion binding|enzyme inhibitor activity|transporter activity				0						TCAGGCTGAGGGACAGGCAGC	0.473													53	69					0	0	1	0	0
CSN3	1448	broad.mit.edu	37	4	71114793	71114793	+	Missense_Mutation	SNP	C	T	T	rs150281469	byFrequency	TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr4:71114793C>T	uc003hfe.3	+	4	224	c.166C>T	c.(166-168)CCT>TCT	p.P56S		NM_005212	NP_005203	P07498	CASK_HUMAN	casein kappa precursor	56						extracellular region	protein binding			ovary(2)|kidney(1)|central_nervous_system(1)	4						AAATAGCTATCCTTATTATGG	0.363													56	86					0	0	1	0	0
FRAS1	80144	broad.mit.edu	37	4	79460483	79460483	+	Silent	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr4:79460483C>T	uc003hlb.2	+	73	11774	c.11334C>T	c.(11332-11334)TTC>TTT	p.F3778F		NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	3773	Extracellular (Potential).				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						ATAAGTACTTCCATGATGTGC	0.423													25	39					0	0	1	0	0
NAA11	84779	broad.mit.edu	37	4	80246951	80246951	+	Silent	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr4:80246951C>T	uc003hlt.3	-	1	221	c.81G>A	c.(79-81)CAG>CAA	p.Q27Q		NM_032693	NP_116082	Q9BSU3	NAA11_HUMAN	alpha-N-acetyltransferase 1B	27	Interaction with NAA15 (By similarity).|N-acetyltransferase.					cytoplasm|nucleus	peptide alpha-N-acetyltransferase activity|protein binding			ovary(1)|central_nervous_system(1)	2						AGTATTTCATCTGGTAGTTCT	0.488													25	33					0	0	1	0	0
PRKG2	5593	broad.mit.edu	37	4	82074822	82074822	+	Silent	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr4:82074822G>A	uc003hmh.2	-	6	980	c.966C>T	c.(964-966)ACC>ACT	p.T322T	PRKG2_uc011ccf.1_5'UTR|PRKG2_uc011ccg.1_5'UTR|PRKG2_uc011cch.1_Silent_p.T322T	NM_006259	NP_006250	Q13237	KGP2_HUMAN	protein kinase, cGMP-dependent, type II	322	cGMP 2.				platelet activation|signal transduction	cytosol	ATP binding|cGMP binding|cGMP-dependent protein kinase activity			breast(3)|central_nervous_system(2)|ovary(1)|large_intestine(1)	7						AAATGAAAAAGGTACTTCCTT	0.303													26	32					0	0	1	0	0
AFF1	4299	broad.mit.edu	37	4	88035745	88035745	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr4:88035745C>T	uc003hqj.3	+	11	2146	c.1739C>T	c.(1738-1740)CCC>CTC	p.P580L	AFF1_uc011ccz.1_Missense_Mutation_p.P587L|AFF1_uc003hqk.3_Missense_Mutation_p.P580L|AFF1_uc011cda.1_Missense_Mutation_p.P218L	NM_005935	NP_005926	P51825	AFF1_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	580						nucleus	sequence-specific DNA binding transcription factor activity			breast(1)	1		Acute lymphoblastic leukemia(40;0.0935)|all_hematologic(202;0.111)|Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000233)		GCCCCCCACCCCGGAAAGAGG	0.597													14	12					0	0	1	0	0
C4orf37	285555	broad.mit.edu	37	4	98761987	98761987	+	Missense_Mutation	SNP	T	C	C			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr4:98761987T>C	uc003htt.1	-	9	1231	c.1141A>G	c.(1141-1143)AGA>GGA	p.R381G		NM_174952	NP_777612	Q8N412	CD037_HUMAN	hypothetical protein LOC285555	381											0				OV - Ovarian serous cystadenocarcinoma(123;2.27e-08)		GCATGTTTTCTTTTAGCCACT	0.413													50	53					0	0	1	0	0
EIF4E	1977	broad.mit.edu	37	4	99808247	99808247	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr4:99808247G>A	uc003hue.2	-	5	1905	c.382C>T	c.(382-384)CGC>TGC	p.R128C	EIF4E_uc011cea.1_Missense_Mutation_p.R148C|EIF4E_uc011ceb.1_Missense_Mutation_p.R128C|EIF4E_uc011cec.1_Missense_Mutation_p.R128C	NM_001968	NP_001959	P06730	IF4E_HUMAN	eukaryotic translation initiation factor 4E	128					G1/S transition of mitotic cell cycle|insulin receptor signaling pathway|interspecies interaction between organisms|mRNA export from nucleus|nuclear-transcribed mRNA poly(A) tail shortening|positive regulation of mitotic cell cycle|regulation of translation	cytoplasmic mRNA processing body|cytosol|eukaryotic translation initiation factor 4F complex|mRNA cap binding complex|RNA-induced silencing complex	protein binding|RNA cap binding|translation initiation factor activity			lung(1)|central_nervous_system(1)	2				OV - Ovarian serous cystadenocarcinoma(123;2.7e-07)|LUSC - Lung squamous cell carcinoma(721;0.00227)		AGCCAAAAGCGATCGAGGTCA	0.373													70	88					0	0	1	0	0
ADH7	131	broad.mit.edu	37	4	100349074	100349074	+	Silent	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr4:100349074G>A	uc003huv.1	-	5	555	c.456C>T	c.(454-456)TTC>TTT	p.F152F		NM_000673	NP_000664	P40394	ADH7_HUMAN	class IV alcohol dehydrogenase, mu or sigma	152					ethanol oxidation|fatty acid omega-oxidation|response to bacterium|response to ethanol|xenobiotic metabolic process	cytosol|soluble fraction	alcohol dehydrogenase activity, zinc-dependent|aldehyde oxidase activity|ethanol binding|receptor antagonist activity|retinol binding|retinol dehydrogenase activity			lung(2)|skin(1)	3				OV - Ovarian serous cystadenocarcinoma(123;1.75e-08)	NADH(DB00157)	TGGTGTTCATGAAGTGGTGGA	0.433													71	91					0	0	1	0	0
CFI	3426	broad.mit.edu	37	4	110670660	110670660	+	Missense_Mutation	SNP	G	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr4:110670660G>T	uc003hzr.3	-	9	1247	c.1039C>A	c.(1039-1041)CAA>AAA	p.Q347K	CFI_uc003hzq.2_Missense_Mutation_p.Q144K|CFI_uc011cft.1_Missense_Mutation_p.Q355K|CFI_uc003hzs.3_Missense_Mutation_p.Q340K	NM_000204	NP_000195	P05156	CFAI_HUMAN	complement factor I preproprotein	347	Peptidase S1.				complement activation, classical pathway|innate immune response|proteolysis	extracellular space|membrane	scavenger receptor activity|serine-type endopeptidase activity				0		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.000331)		TTTACCAGTTGTGCTCGCTTT	0.413													39	47					6.23363e-37	6.3468e-37	1	1	0
BBS7	55212	broad.mit.edu	37	4	122780197	122780197	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr4:122780197G>A	uc003ied.2	-	5	652	c.478C>T	c.(478-480)CGT>TGT	p.R160C	BBS7_uc003iee.1_Missense_Mutation_p.R160C	NM_176824	NP_789794	Q8IWZ6	BBS7_HUMAN	Bardet-Biedl syndrome 7 protein isoform a	160					cilium morphogenesis|digestive tract morphogenesis|fat cell differentiation|heart looping|melanosome transport|pigment granule aggregation in cell center|response to stimulus|visual perception	BBSome|centrosome|cilium membrane	protein binding			ovary(1)	1						GGTGTGATACGAGATAATCTT	0.348									Bardet-Biedl_syndrome				104	116					0	0	1	0	0
PCDH10	57575	broad.mit.edu	37	4	134073364	134073364	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr4:134073364G>A	uc003iha.2	+	1	2895	c.2069G>A	c.(2068-2070)GGG>GAG	p.G690E	PCDH10_uc003igz.2_Missense_Mutation_p.G690E	NM_032961	NP_116586	Q9P2E7	PCD10_HUMAN	protocadherin 10 isoform 1 precursor	690	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)	2				LUSC - Lung squamous cell carcinoma(193;0.227)		ggcgggggcgggagcggaggc	0.587													17	23					0	0	1	0	0
SETD7	80854	broad.mit.edu	37	4	140432985	140432985	+	Silent	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr4:140432985G>A	uc003ihw.2	-	8	1219	c.933C>T	c.(931-933)CCC>CCT	p.P311P		NM_030648	NP_085151	Q8WTS6	SETD7_HUMAN	SET domain-containing protein 7	311	SET.				peptidyl-lysine dimethylation|peptidyl-lysine monomethylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleus	histone-lysine N-methyltransferase activity|p53 binding			ovary(1)|central_nervous_system(1)	2	all_hematologic(180;0.156)					GCCCAAAACGGGGGTGGACAA	0.577													54	56					0	0	1	0	0
NPY5R	4889	broad.mit.edu	37	4	164272161	164272161	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr4:164272161G>A	uc003iqn.2	+	4	918	c.736G>A	c.(736-738)GAA>AAA	p.E246K		NM_006174	NP_006165	Q15761	NPY5R_HUMAN	neuropeptide Y receptor Y5	246	Cytoplasmic (Potential).				cardiac left ventricle morphogenesis|outflow tract morphogenesis	integral to plasma membrane				lung(6)|skin(1)	7	all_hematologic(180;0.166)	Prostate(90;0.109)				GTCCAACAAAGAAAACAGACT	0.383													22	29					0	0	1	0	0
TKTL2	84076	broad.mit.edu	37	4	164394112	164394112	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr4:164394112C>T	uc003iqp.3	-	1	936	c.775G>A	c.(775-777)GAA>AAA	p.E259K		NM_032136	NP_115512	Q9H0I9	TKTL2_HUMAN	transketolase-like 2	259						cytoplasm	metal ion binding|transketolase activity			ovary(2)|skin(2)|pancreas(1)	5	all_hematologic(180;0.166)	Prostate(90;0.0959)|all_neural(102;0.223)				TGCCAATTTTCTGCATCCTCA	0.413													59	75					0	0	1	0	0
ODZ3	55714	broad.mit.edu	37	4	183664346	183664346	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr4:183664346G>T	uc003ivd.1	+	18	3440	c.3403G>T	c.(3403-3405)GAA>TAA	p.E1135*	ODZ3_uc003ive.1_Nonsense_Mutation_p.E541*	NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3	1135	Extracellular (Potential).				signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		GGGAAACGGGGAAAACCAGTT	0.438													10	27					2.80697e-09	2.82798e-09	1	1	0
SDHA	6389	broad.mit.edu	37	5	225635	225635	+	Silent	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr5:225635C>T	uc003jao.3	+	4	529	c.414C>T	c.(412-414)GCC>GCT	p.A138A	SDHA_uc003jan.2_Silent_p.A138A|SDHA_uc011clv.1_Silent_p.A138A|SDHA_uc011clw.1_Intron|SDHA_uc003jap.3_Silent_p.A138A|SDHA_uc003jaq.3_5'Flank	NM_004168	NP_004159	P31040	DHSA_HUMAN	succinate dehydrogenase complex, subunit A,	138					nervous system development|respiratory electron transport chain|succinate metabolic process|transport|tricarboxylic acid cycle	mitochondrial respiratory chain complex II	electron carrier activity|flavin adenine dinucleotide binding|protein binding|succinate dehydrogenase (ubiquinone) activity				0			Epithelial(17;0.0159)|all cancers(22;0.0236)|OV - Ovarian serous cystadenocarcinoma(19;0.0674)|Lung(60;0.113)		Succinic acid(DB00139)	ACCAGGATGCCATCCACTACA	0.592									Familial_Paragangliomas				30	51					0	0	1	0	0
SDHA	6389	broad.mit.edu	37	5	226103	226103	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr5:226103C>T	uc003jao.3	+	5	677	c.562C>T	c.(562-564)CGG>TGG	p.R188W	SDHA_uc003jan.2_Missense_Mutation_p.R188W|SDHA_uc011clv.1_Missense_Mutation_p.R188W|SDHA_uc011clw.1_Missense_Mutation_p.R140W|SDHA_uc003jap.3_Missense_Mutation_p.R188W|SDHA_uc003jaq.3_5'Flank	NM_004168	NP_004159	P31040	DHSA_HUMAN	succinate dehydrogenase complex, subunit A,	188					nervous system development|respiratory electron transport chain|succinate metabolic process|transport|tricarboxylic acid cycle	mitochondrial respiratory chain complex II	electron carrier activity|flavin adenine dinucleotide binding|protein binding|succinate dehydrogenase (ubiquinone) activity				0			Epithelial(17;0.0159)|all cancers(22;0.0236)|OV - Ovarian serous cystadenocarcinoma(19;0.0674)|Lung(60;0.113)		Succinic acid(DB00139)	GCAGGCCCATCGGTGCTGCTG	0.547									Familial_Paragangliomas				59	66					0	0	1	0	0
SLC6A19	340024	broad.mit.edu	37	5	1201859	1201859	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr5:1201859C>T	uc003jbw.3	+	1	150	c.94C>T	c.(94-96)CGG>TGG	p.R32W		NM_001003841	NP_001003841	Q695T7	S6A19_HUMAN	solute carrier family 6, member 19	32	Cytoplasmic (Potential).				cellular nitrogen compound metabolic process	integral to plasma membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity				0	all_cancers(3;3.55e-15)|Lung NSC(6;2.89e-14)|all_lung(6;2.2e-13)|all_epithelial(6;3.75e-10)		Epithelial(17;0.000356)|all cancers(22;0.00137)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|Lung(60;0.185)			GGCCAGCTCCCGGCCGAAGTG	0.667													17	27					0	0	1	0	0
IRX2	153572	broad.mit.edu	37	5	2749124	2749124	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr5:2749124G>A	uc003jda.2	-	3	940	c.698C>T	c.(697-699)TCG>TTG	p.S233L	IRX2_uc003jdb.2_Missense_Mutation_p.S233L	NM_001134222	NP_001127694	Q9BZI1	IRX2_HUMAN	iroquois homeobox 2	233						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(1)	1				GBM - Glioblastoma multiforme(108;0.204)		CGACTCGGCCGAGCACGAGTG	0.697													21	30					0	0	1	0	0
ADAMTS16	170690	broad.mit.edu	37	5	5190165	5190165	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr5:5190165G>A	uc003jdl.2	+	7	1267	c.1129G>A	c.(1129-1131)GGG>AGG	p.G377R	ADAMTS16_uc003jdk.1_Missense_Mutation_p.G377R|ADAMTS16_uc003jdj.1_Missense_Mutation_p.G377R	NM_139056	NP_620687	Q8TE57	ATS16_HUMAN	ADAM metallopeptidase with thrombospondin type 1	377	Peptidase M12B.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(3)|lung(2)|large_intestine(1)|breast(1)|pancreas(1)	8						GGGGAAAGATGGGACTCGTCA	0.517													52	67					0	0	1	0	0
ADAMTS16	170690	broad.mit.edu	37	5	5190167	5190167	+	Silent	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr5:5190167G>A	uc003jdl.2	+	7	1269	c.1131G>A	c.(1129-1131)GGG>GGA	p.G377G	ADAMTS16_uc003jdk.1_Silent_p.G377G|ADAMTS16_uc003jdj.1_Silent_p.G377G	NM_139056	NP_620687	Q8TE57	ATS16_HUMAN	ADAM metallopeptidase with thrombospondin type 1	377	Peptidase M12B.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(3)|lung(2)|large_intestine(1)|breast(1)|pancreas(1)	8						GGAAAGATGGGACTCGTCATG	0.517													53	68					0	0	1	0	0
TAS2R1	50834	broad.mit.edu	37	5	9629923	9629923	+	Missense_Mutation	SNP	T	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr5:9629923T>A	uc003jem.1	-	1	541	c.222A>T	c.(220-222)GAA>GAT	p.E74D		NM_019599	NP_062545	Q9NYW7	TA2R1_HUMAN	taste receptor T2R1	74	Helical; Name=2; (Potential).				chemosensory behavior|sensory perception of taste	integral to membrane	taste receptor activity			ovary(3)	3						ACATGATGAATTCTATGAAGA	0.393													11	12					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13842003	13842003	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr5:13842003C>T	uc003jfd.2	-	33	5324	c.5282G>A	c.(5281-5283)CGA>CAA	p.R1761Q		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	1761	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TGACAGAATTCGATCATAGAT	0.328									Kartagener_syndrome				22	36					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13864539	13864539	+	Silent	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr5:13864539C>T	uc003jfd.2	-	28	4605	c.4563G>A	c.(4561-4563)GAG>GAA	p.E1521E		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	1521	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					GAAGAGGTGCCTCCATGATAT	0.408									Kartagener_syndrome				18	23					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13870886	13870886	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr5:13870886C>T	uc003jfd.2	-	24	3866	c.3824G>A	c.(3823-3825)GGA>GAA	p.G1275E		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	1275	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CTCAATAGGTCCTACTTGAAA	0.368									Kartagener_syndrome				17	14					0	0	1	0	0
GUSBP1	728411	broad.mit.edu	37	5	21461940	21461940	+	Missense_Mutation	SNP	G	A	A	rs137972597	by1000genomes	TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr5:21461940G>A	uc010iub.2	+	3	220	c.140G>A	c.(139-141)CGA>CAA	p.R47Q	GUSBP1_uc011cnn.1_RNA|GUSBP1_uc003jgh.3_RNA|GUSBP1_uc003jgf.3_Missense_Mutation_p.R47Q|GUSBP1_uc003jgg.3_RNA	NR_027028				SubName: Full=Putative uncharacterized protein GUSBL2;												0						GAACAAACTCGAAGAACAGCT	0.368													27	34					0	0	1	0	0
PRDM9	56979	broad.mit.edu	37	5	23527083	23527083	+	Missense_Mutation	SNP	G	C	C	rs112192848		TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr5:23527083G>C	uc003jgo.2	+	11	2068	c.1886G>C	c.(1885-1887)AGA>ACA	p.R629T		NM_020227	NP_064612	Q9NQV7	PRDM9_HUMAN	PR domain containing 9	629	C2H2-type 5.				meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleoplasm	histone-lysine N-methyltransferase activity|nucleic acid binding|zinc ion binding			ovary(3)|large_intestine(2)|pancreas(1)	6						CACCAGAGGAGACACACAGGG	0.612										HNSCC(3;0.000094)			5	86					0	0	1	0	0
PDZD2	23037	broad.mit.edu	37	5	32089580	32089580	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr5:32089580C>T	uc003jhl.2	+	20	6414	c.6026C>T	c.(6025-6027)CCC>CTC	p.P2009L	PDZD2_uc003jhm.2_Missense_Mutation_p.P2009L	NM_178140	NP_835260	O15018	PDZD2_HUMAN	PDZ domain containing 2	2009					cell adhesion	cell-cell junction|endoplasmic reticulum|extracellular region|nucleus				central_nervous_system(4)|ovary(2)|skin(2)|large_intestine(1)	9						CTCTCTGAACCCGACAGAGGT	0.612													89	140					0	0	1	0	0
SLC1A3	6507	broad.mit.edu	37	5	36680671	36680671	+	Silent	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr5:36680671C>T	uc003jkj.3	+	8	1745	c.1269C>T	c.(1267-1269)TTC>TTT	p.F423F	SLC1A3_uc011cox.1_Silent_p.F316F|SLC1A3_uc010iuy.2_Silent_p.F423F	NM_004172	NP_004163	P43003	EAA1_HUMAN	solute carrier family 1 (glial high affinity	423					D-aspartate import|L-glutamate import|neurotransmitter uptake	integral to membrane|membrane fraction	high-affinity glutamate transmembrane transporter activity|sodium:dicarboxylate symporter activity				0	all_lung(31;0.000245)		Epithelial(62;0.0444)|Lung(74;0.111)|all cancers(62;0.128)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)		L-Glutamic Acid(DB00142)	AACTGAACTTCGGACAAATTA	0.348													39	43					0	0	1	0	0
OSMR	9180	broad.mit.edu	37	5	38881793	38881793	+	Silent	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr5:38881793G>A	uc003jln.1	+	4	712	c.345G>A	c.(343-345)AAG>AAA	p.K115K	OSMR_uc003jlm.1_Silent_p.K115K	NM_003999	NP_003990	Q99650	OSMR_HUMAN	oncostatin M receptor precursor	115	Extracellular (Potential).				cell proliferation|positive regulation of cell proliferation	oncostatin-M receptor complex	growth factor binding|oncostatin-M receptor activity			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5	all_lung(31;0.000365)					TAAGAATAAAGAGTTTGGTGG	0.488													26	34					0	0	1	0	0
HEATR7B2	133558	broad.mit.edu	37	5	41000328	41000328	+	Silent	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr5:41000328C>T	uc003jmj.3	-	39	4966	c.4476G>A	c.(4474-4476)GTG>GTA	p.V1492V	HEATR7B2_uc003jmi.3_Silent_p.V1047V	NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	1492							binding			ovary(6)|central_nervous_system(2)	8						TCACCAGTTTCACACAGAATT	0.498													40	38					0	0	1	0	0
HEATR7B2	133558	broad.mit.edu	37	5	41000874	41000874	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr5:41000874C>T	uc003jmj.3	-	38	4746	c.4256G>A	c.(4255-4257)GGA>GAA	p.G1419E	HEATR7B2_uc003jmi.3_Missense_Mutation_p.G974E	NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	1419							binding			ovary(6)|central_nervous_system(2)	8						CCACCTTCTTCCTGTTAGGGG	0.443													7	2					0	0	1	0	0
C6	729	broad.mit.edu	37	5	41154034	41154034	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr5:41154034C>T	uc003jmk.2	-	15	2378	c.2168G>A	c.(2167-2169)AGA>AAA	p.R723K	C6_uc003jml.1_Missense_Mutation_p.R723K	NM_000065	NP_000056	P13671	CO6_HUMAN	complement component 6 precursor	723	C5b-binding domain.|Sushi 2.				complement activation, classical pathway|cytolysis|innate immune response	membrane attack complex	protein binding			ovary(3)|central_nervous_system(2)|skin(2)	7		Breast(839;1.07e-05)|Ovarian(839;0.0228)|Lung SC(612;0.0548)|Lung NSC(810;0.128)|all_neural(839;0.157)				TTCACCAATTCTATACAATCT	0.463													33	36					0	0	1	0	0
HCN1	348980	broad.mit.edu	37	5	45262123	45262123	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr5:45262123G>A	uc003jok.2	-	8	2598	c.2573C>T	c.(2572-2574)CCA>CTA	p.P858L		NM_021072	NP_066550	O60741	HCN1_HUMAN	hyperpolarization activated cyclic	858	Cytoplasmic (Potential).|Poly-Pro.					integral to membrane	cAMP binding|sodium channel activity|voltage-gated potassium channel activity			ovary(1)	1						AGGGGGTGCTGGAGGGACTCC	0.587													56	53					0	0	1	0	0
ITGA2	3673	broad.mit.edu	37	5	52374640	52374640	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr5:52374640G>A	uc003joy.2	+	24	3007	c.2864G>A	c.(2863-2865)GGG>GAG	p.G955E	ITGA2_uc011cqa.1_RNA|ITGA2_uc011cqb.1_RNA|ITGA2_uc011cqc.1_Missense_Mutation_p.G879E|ITGA2_uc011cqd.1_Intron|ITGA2_uc011cqe.1_RNA	NM_002203	NP_002194	P17301	ITA2_HUMAN	integrin alpha 2 precursor	955	Extracellular (Potential).				axon guidance|blood coagulation|cell-matrix adhesion|integrin-mediated signaling pathway|interspecies interaction between organisms|organ morphogenesis	integrin complex	collagen binding|identical protein binding|receptor activity			lung(1)	1		Lung NSC(810;3.11e-05)|Breast(144;0.014)|Prostate(461;0.0181)				TCTTCGGATGGGAATGTTCCT	0.363													12	28					0	0	1	0	0
GPR98	84059	broad.mit.edu	37	5	89949315	89949315	+	Silent	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr5:89949315C>T	uc003kju.2	+	20	4020	c.3924C>T	c.(3922-3924)TTC>TTT	p.F1308F	GPR98_uc003kjt.2_5'UTR	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	1308	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		TTGGAATTTTCCCCACCACCG	0.483													14	24					0	0	1	0	0
POU5F2	134187	broad.mit.edu	37	5	93077030	93077030	+	Silent	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr5:93077030C>T	uc003kkl.1	-	1	280	c.240G>A	c.(238-240)AGG>AGA	p.R80R	FAM172A_uc010jbd.2_Intron|FAM172A_uc011cuf.1_Intron|FAM172A_uc011cug.1_Intron|FAM172A_uc011cuh.1_Intron|FAM172A_uc011cui.1_Intron|FAM172A_uc011cuj.1_Intron	NM_153216	NP_694948	Q8N7G0	PO5F2_HUMAN	POU domain class 5, transcription factor 2	80						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0		all_cancers(142;3.87e-05)|all_epithelial(76;4.59e-07)|all_lung(232;0.0126)|Lung NSC(167;0.0155)|Ovarian(174;0.0218)|Prostate(281;0.173)|Colorectal(57;0.19)		UCEC - Uterine corpus endometrioid carcinoma (5;0.0415)|all cancers(79;2.03e-19)		CAAGACGGGGCCTGCAGGGTG	0.682													10	7					0	0	1	0	0
CAMK4	814	broad.mit.edu	37	5	110712584	110712584	+	Silent	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr5:110712584C>T	uc011cvj.1	+	5	429	c.330C>T	c.(328-330)ACC>ACT	p.T110T	CAMK4_uc003kpf.2_Silent_p.T110T|CAMK4_uc010jbv.2_Intron	NM_001744	NP_001735	Q16566	KCC4_HUMAN	calcium/calmodulin-dependent protein kinase IV	110	Protein kinase.				activation of phospholipase C activity|nerve growth factor receptor signaling pathway|synaptic transmission	cytosol|nucleoplasm	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity			ovary(3)|lung(2)	5		all_cancers(142;1.49e-05)|all_epithelial(76;1.82e-07)|Prostate(80;0.00964)|all_lung(232;0.0181)|Lung NSC(167;0.0298)|Ovarian(225;0.0446)|Colorectal(57;0.0478)|Breast(839;0.244)		OV - Ovarian serous cystadenocarcinoma(64;3.79e-08)|Epithelial(69;5.29e-08)|all cancers(49;1.1e-05)|COAD - Colon adenocarcinoma(37;0.109)		TATTTGAAACCCCTACAGAAA	0.343													29	75					0	0	1	0	0
YTHDC2	64848	broad.mit.edu	37	5	112920141	112920141	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr5:112920141C>T	uc003kqn.2	+	26	3973	c.3790C>T	c.(3790-3792)CCT>TCT	p.P1264S		NM_022828	NP_073739	Q9H6S0	YTDC2_HUMAN	YTH domain containing 2	1264	Ser-rich.						ATP binding|ATP-dependent helicase activity|nucleic acid binding			skin(2)|central_nervous_system(1)	3		all_cancers(142;7.69e-05)|all_epithelial(76;6.42e-07)|Colorectal(10;0.00278)|Prostate(80;0.00955)|Ovarian(225;0.0444)|Lung NSC(810;0.143)|all_lung(232;0.163)|Breast(839;0.244)		OV - Ovarian serous cystadenocarcinoma(64;7.2e-08)|Epithelial(69;8.83e-08)|all cancers(49;6.9e-06)|COAD - Colon adenocarcinoma(37;0.0458)|Colorectal(14;0.0594)		TTACCCAAGTCCTTGTGCTAG	0.403													46	60					0	0	1	0	0
FNIP1	96459	broad.mit.edu	37	5	131014771	131014771	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr5:131014771G>A	uc003kvs.1	-	12	1442	c.1300C>T	c.(1300-1302)CGT>TGT	p.R434C	RAPGEF6_uc003kvp.1_Intron|FNIP1_uc003kvt.1_Missense_Mutation_p.R406C|FNIP1_uc010jdm.1_Missense_Mutation_p.R389C|FNIP1_uc003kvu.2_Missense_Mutation_p.R434C	NM_133372	NP_588613	Q8TF40	FNIP1_HUMAN	folliculin interacting protein 1 isoform 1	434					regulation of protein phosphorylation	cytoplasm	protein binding			pancreas(1)|skin(1)	2		all_cancers(142;0.00347)|Lung NSC(810;0.106)|all_lung(232;0.123)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	Lung(113;0.0665)		TTCATGAAACGATAGCAAAGG	0.348													14	15					0	0	1	0	0
H2AFY	9555	broad.mit.edu	37	5	134724752	134724752	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr5:134724752G>A	uc003lam.1	-	2	242	c.32C>T	c.(31-33)ACC>ATC	p.T11I	H2AFY_uc003lao.1_Missense_Mutation_p.T11I|H2AFY_uc003lan.1_Missense_Mutation_p.T11I|H2AFY_uc003lap.1_RNA|H2AFY_uc003laq.1_RNA|H2AFY_uc003lar.1_RNA|H2AFY_uc011cxz.1_Missense_Mutation_p.T11I|H2AFY_uc003las.1_Missense_Mutation_p.T11I|H2AFY_uc003lat.1_Missense_Mutation_p.T11I	NM_138610	NP_613258	O75367	H2AY_HUMAN	H2A histone family, member Y isoform 3	11	Histone H2A.				chromatin modification|dosage compensation|nucleosome assembly	Barr body|nucleosome	DNA binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			GGACGTCTTGGTGGACTTCTT	0.617													17	38					0	0	1	0	0
ANKHD1-EIF4EBP3	404734	broad.mit.edu	37	5	139876707	139876707	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr5:139876707G>A	uc003lfs.1	+	15	2972	c.2848G>A	c.(2848-2850)GAA>AAA	p.E950K	ANKHD1_uc003lfq.1_Missense_Mutation_p.E969K|ANKHD1_uc003lfr.2_Missense_Mutation_p.E950K|ANKHD1_uc003lft.1_Intron|ANKHD1_uc003lfu.1_Missense_Mutation_p.E430K|ANKHD1_uc003lfv.1_Intron	NM_020690	NP_065741	Q8IWZ2	Q8IWZ2_HUMAN	ANKHD1-EIF4EBP3 protein	950						cytoplasm|nucleus	RNA binding			ovary(6)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AAATTCTCTTGAACTTCAGAA	0.428													79	110					0	0	1	0	0
PCDHA10	56139	broad.mit.edu	37	5	140236088	140236088	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr5:140236088C>T	uc003lhx.2	+	1	455	c.455C>T	c.(454-456)CCA>CTA	p.P152L	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Missense_Mutation_p.P152L|PCDHA10_uc011dad.1_Missense_Mutation_p.P152L	NM_018901	NP_061724	Q9Y5I2	PCDAA_HUMAN	protocadherin alpha 10 isoform 1 precursor	152	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			ovary(2)|skin(2)|breast(1)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TCTCGATTTCCACTAGAAGGC	0.423													64	83					0	0	1	0	0
PCDHA12	56137	broad.mit.edu	37	5	140256635	140256635	+	Silent	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr5:140256635G>A	uc003lic.2	+	1	1705	c.1578G>A	c.(1576-1578)GAG>GAA	p.E526E	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc011daf.1_Silent_p.E526E	NM_018903	NP_061726	Q9UN75	PCDAC_HUMAN	protocadherin alpha 12 isoform 1 precursor	526	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TAGACCACGAGGAGCTGGAGC	0.697													81	108					0	0	1	0	0
PCDHB10	56126	broad.mit.edu	37	5	140572553	140572553	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr5:140572553C>T	uc003lix.2	+	1	602	c.428C>T	c.(427-429)TCA>TTA	p.S143L		NM_018930	NP_061753	Q9UN67	PCDBA_HUMAN	protocadherin beta 10 precursor	143	Cadherin 2.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TTAAAAATATCAGAAAATACA	0.433													32	42					0	0	1	0	0
ZNF300	91975	broad.mit.edu	37	5	150275189	150275189	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr5:150275189C>T	uc003lsy.1	-	6	1879	c.1612G>A	c.(1612-1614)GGA>AGA	p.G538R	IRGM_uc011dcl.1_Intron	NM_052860	NP_443092	Q96RE9	ZN300_HUMAN	zinc finger protein 300	538	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|skin(1)	2		Medulloblastoma(196;0.109)|all_hematologic(541;0.131)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			CGCTGGTGTCCCGGAAGGTGG	0.428													25	31					0	0	1	0	0
LARP1	23367	broad.mit.edu	37	5	154092519	154092519	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr5:154092519C>T	uc003lvo.2	+	1	58	c.34C>T	c.(34-36)CCT>TCT	p.P12S		NM_015315	NP_056130	Q6PKG0	LARP1_HUMAN	la related protein isoform 1	276							protein binding|RNA binding			ovary(2)|pancreas(1)|skin(1)	4	Renal(175;0.00488)	Medulloblastoma(196;0.0354)|all_neural(177;0.147)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)			AAAGAGGCCTCCTTTCCCTCA	0.587													23	44					0	0	1	0	0
HAVCR1	26762	broad.mit.edu	37	5	156479517	156479517	+	Silent	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr5:156479517C>T	uc010jij.1	-	4	713	c.528G>A	c.(526-528)ACG>ACA	p.T176T	HAVCR1_uc011ddl.1_Silent_p.T7T|HAVCR1_uc003lwi.2_Silent_p.T176T|HAVCR1_uc011ddm.1_Silent_p.T176T	NM_001099414	NP_001092884	Q96D42	HAVR1_HUMAN	hepatitis A virus cellular receptor 1	171	Extracellular (Potential).|6.|11 X 6 AA approximate tandem repeats of V-P-T-T-T-T].|Thr-rich.				interspecies interaction between organisms	integral to membrane	receptor activity			ovary(1)|skin(1)	2	Renal(175;0.00488)	Medulloblastoma(196;0.0354)|all_neural(177;0.0999)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			TCAGAACAGTCGTTGTCGTTG	0.468													333	347					0	0	1	0	0
ATP10B	23120	broad.mit.edu	37	5	160113225	160113225	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr5:160113225C>T	uc003lym.1	-	6	1178	c.331G>A	c.(331-333)GAA>AAA	p.E111K	ATP10B_uc003lyp.2_Missense_Mutation_p.E111K|ATP10B_uc011deg.1_Missense_Mutation_p.E155K|ATP10B_uc003lyo.2_5'Flank	NM_025153	NP_079429	O94823	AT10B_HUMAN	ATPase, class V, type 10B	111	Helical; (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5	Renal(175;0.00196)	Medulloblastoma(196;0.0377)|all_neural(177;0.121)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			TGGAAGACTTCCATGGAGGGC	0.463													15	26					0	0	1	0	0
WWC1	23286	broad.mit.edu	37	5	167850845	167850845	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr5:167850845C>T	uc003lzu.2	+	11	1675	c.1582C>T	c.(1582-1584)CCA>TCA	p.P528S	WWC1_uc003lzv.2_Missense_Mutation_p.P528S|WWC1_uc011den.1_Missense_Mutation_p.P528S|WWC1_uc003lzw.2_Missense_Mutation_p.P327S	NM_015238	NP_056053	Q8IX03	KIBRA_HUMAN	WW and C2 domain containing 1 isoform 3	528					cell migration|positive regulation of MAPKKK cascade|regulation of hippo signaling cascade|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus|perinuclear region of cytoplasm|ruffle membrane	protein binding|transcription coactivator activity			ovary(2)|skin(2)|breast(1)	5	Renal(175;0.000212)|Lung NSC(126;0.0875)|all_lung(126;0.166)	Medulloblastoma(196;0.0399)|all_neural(177;0.0577)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0364)|Epithelial(171;0.0765)|OV - Ovarian serous cystadenocarcinoma(192;0.0918)		GTCTGGCACCCCAAAGTCCAT	0.637													24	24					0	0	1	0	0
DOCK2	1794	broad.mit.edu	37	5	169509824	169509824	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr5:169509824G>A	uc003maf.2	+	52	5535	c.5455G>A	c.(5455-5457)GGC>AGC	p.G1819S	DOCK2_uc011der.1_RNA|DOCK2_uc010jjm.2_Missense_Mutation_p.G1311S|DOCK2_uc003mah.2_Missense_Mutation_p.G375S	NM_004946	NP_004937	Q92608	DOCK2_HUMAN	dedicator of cytokinesis 2	1819					actin cytoskeleton organization|regulation of defense response to virus by virus|viral reproduction	cytoskeleton|cytosol|endomembrane system|membrane	electron carrier activity|GTP binding|GTPase binding|heme binding|Rac guanyl-nucleotide exchange factor activity|T cell receptor binding			ovary(5)|pancreas(2)	7	Renal(175;0.000159)|Lung NSC(126;0.0221)|all_lung(126;0.0337)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			GGCTGAAGAAGGCAAACAGAT	0.517													32	58					0	0	1	0	0
TSPAN17	26262	broad.mit.edu	37	5	176083925	176083925	+	Silent	SNP	C	T	T	rs61753280		TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr5:176083925C>T	uc003met.2	+	8	1015	c.786C>T	c.(784-786)CTC>CTT	p.L262L	TSPAN17_uc003mes.3_Silent_p.L177L|TSPAN17_uc003meu.2_Silent_p.L259L|TSPAN17_uc003mev.2_Silent_p.L262L|TSPAN17_uc003mew.2_Silent_p.L259L	NM_012171	NP_036303	Q96FV3	TSN17_HUMAN	transmembrane 4 superfamily member 17 isoform a	259	Cytoplasmic (Potential).					integral to membrane|ubiquitin ligase complex	protein binding|ubiquitin-protein ligase activity				0	all_cancers(89;0.00141)|Renal(175;0.000269)|Lung NSC(126;0.00814)|all_lung(126;0.0133)	Medulloblastoma(196;0.00498)|all_neural(177;0.0212)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			CCCAGAACCTCGTGAGTGACA	0.662													22	33					0	0	1	0	0
ZNF454	285676	broad.mit.edu	37	5	178392632	178392632	+	Silent	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr5:178392632G>A	uc003mjo.1	+	5	1498	c.1227G>A	c.(1225-1227)GAG>GAA	p.E409E	ZNF454_uc010jkz.1_Silent_p.E409E	NM_182594	NP_872400	Q8N9F8	ZN454_HUMAN	zinc finger protein 454	409					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|lung(1)	3	all_cancers(89;0.000904)|Renal(175;0.000159)|all_epithelial(37;0.000167)|Lung NSC(126;0.00199)|all_lung(126;0.00351)	all_cancers(40;0.225)|all_neural(177;0.00802)|Medulloblastoma(196;0.0145)|all_hematologic(541;0.248)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.234)		ACACTGGAGAGAAACCTTACA	0.408													35	49					0	0	1	0	0
FLT4	2324	broad.mit.edu	37	5	180047230	180047230	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr5:180047230C>T	uc003mma.3	-	17	2564	c.2485G>A	c.(2485-2487)GAA>AAA	p.E829K	FLT4_uc003mlz.3_Missense_Mutation_p.E829K|FLT4_uc003mmb.1_Missense_Mutation_p.E362K	NM_002020	NP_002011	P35916	VGFR3_HUMAN	fms-related tyrosine kinase 4 isoform 2	829	Cytoplasmic (Potential).				positive regulation of cell proliferation	integral to plasma membrane	ATP binding|protein phosphatase binding|vascular endothelial growth factor receptor activity			lung(7)|skin(2)|ovary(2)|stomach(1)|central_nervous_system(1)|breast(1)|kidney(1)	15	all_cancers(89;2.21e-05)|all_epithelial(37;5.29e-06)|Renal(175;0.000159)|Lung NSC(126;0.00199)|all_lung(126;0.00351)|Breast(19;0.114)	all_cancers(40;0.00245)|Medulloblastoma(196;0.0133)|all_neural(177;0.0199)|all_hematologic(541;0.163)|Ovarian(839;0.238)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.134)	Sorafenib(DB00398)|Sunitinib(DB01268)	GACAGGTATTCGCATTGCTCC	0.662									Congenital_Hereditary_Lymphedema				69	86					0	0	1	0	0
HIST1H4G	8369	broad.mit.edu	37	6	26247170	26247170	+	Silent	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr6:26247170C>T	uc003nhf.2	-	1	36	c.36G>A	c.(34-36)GGG>GGA	p.G12G		NM_003547	NP_003538	Q99525	H4G_HUMAN	histone cluster 1, H4g	12					nucleosome assembly	nucleosome|nucleus	DNA binding				0		all_hematologic(11;0.0945)|Acute lymphoblastic leukemia(11;0.167)				CACCGCCTTTCCCAAGGCCTT	0.507													13	21					0	0	1	0	0
OR2J2	26707	broad.mit.edu	37	6	29141438	29141438	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr6:29141438C>T	uc011dlm.1	+	1	128	c.26C>T	c.(25-27)TCG>TTG	p.S9L		NM_030905	NP_112167	O76002	OR2J2_HUMAN	olfactory receptor, family 2, subfamily J,	9	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						AATGCAAGTTCGGAAGACTTC	0.368													24	45					0	0	1	0	0
OR2J2	26707	broad.mit.edu	37	6	29141776	29141776	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr6:29141776G>A	uc011dlm.1	+	1	466	c.364G>A	c.(364-366)GAT>AAT	p.D122N		NM_030905	NP_112167	O76002	OR2J2_HUMAN	olfactory receptor, family 2, subfamily J,	122	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						GATGTCATATGATCGTTATGT	0.463													96	204					0	0	1	0	0
OR5V1	81696	broad.mit.edu	37	6	29323851	29323851	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr6:29323851C>T	uc011dlo.1	-	1	204	c.122G>A	c.(121-123)GGA>GAA	p.G41E		NM_030876	NP_110503	Q9UGF6	OR5V1_HUMAN	olfactory receptor, family 5, subfamily V,	41	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|kidney(1)	4						TAATATATTTCCTCCCAAAGT	0.363													33	34					0	0	1	0	0
NCR3	259197	broad.mit.edu	37	6	31560469	31560469	+	Silent	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr6:31560469G>A	uc003nuv.2	-	1	294	c.30C>T	c.(28-30)ATC>ATT	p.I10I	NCR3_uc003nuw.2_Silent_p.I10I|NCR3_uc003nux.1_Silent_p.I10I	NM_147130	NP_667341	O14931	NCTR3_HUMAN	natural cytotoxicity triggering receptor 3	10					cell recognition|immune response|inflammatory response|positive regulation of natural killer cell mediated cytotoxicity	integral to plasma membrane	receptor activity			ovary(1)|skin(1)	2						GATGGACCATGATCAAGATGA	0.587													31	50					0	0	1	0	0
TNXB	7148	broad.mit.edu	37	6	32029944	32029944	+	Silent	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr6:32029944G>A	uc003nzl.2	-	20	7360	c.7158C>T	c.(7156-7158)ATC>ATT	p.I2386I		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	2448					actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						CTGTCACCCCGATGGCAGACA	0.627													16	24					0	0	1	0	0
NOTCH4	4855	broad.mit.edu	37	6	32181549	32181549	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr6:32181549G>A	uc003obb.2	-	14	2375	c.2236C>T	c.(2236-2238)CCT>TCT	p.P746S	NOTCH4_uc011dpu.1_RNA|NOTCH4_uc011dpv.1_RNA	NM_004557	NP_004548	Q99466	NOTC4_HUMAN	notch4 preproprotein	746	EGF-like 19.|Extracellular (Potential).				cell fate determination|embryo development|hemopoiesis|mammary gland development|negative regulation of endothelial cell differentiation|Notch receptor processing|Notch signaling pathway|patterning of blood vessels|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|protein heterodimerization activity|receptor activity			lung(8)|ovary(5)|breast(4)|central_nervous_system(3)|upper_aerodigestive_tract(1)|skin(1)	22						CCAGGGCTAGGGTTGCAGGAG	0.592													26	26					0	0	1	0	0
COL11A2	1302	broad.mit.edu	37	6	33156227	33156227	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr6:33156227C>T	uc003ocx.1	-	4	746	c.518G>A	c.(517-519)CGG>CAG	p.R173Q	COL11A2_uc003ocy.1_Missense_Mutation_p.R173Q|COL11A2_uc003ocz.1_Missense_Mutation_p.R173Q|COL11A2_uc003oda.2_Missense_Mutation_p.R173Q	NM_080680	NP_542411	P13942	COBA2_HUMAN	collagen, type XI, alpha 2 isoform 1	173	TSP N-terminal.				cartilage development|cell adhesion|collagen fibril organization|sensory perception of sound|soft palate development	collagen type XI	extracellular matrix structural constituent conferring tensile strength|protein binding, bridging			ovary(3)|skin(2)	5						GGGGAGAGGCCGGGTGACTCG	0.542													47	80					0	0	1	0	0
MOCS1	4337	broad.mit.edu	37	6	39874151	39874151	+	Silent	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr6:39874151C>T	uc003opb.2	-	10	2031	c.1893G>A	c.(1891-1893)GGG>GGA	p.G631G	MOCS1_uc003opa.2_3'UTR|MOCS1_uc003opc.2_Silent_p.G615G|MOCS1_uc003opd.2_3'UTR|MOCS1_uc003ope.2_Silent_p.G528G	NM_005942	NP_005933	Q9NZB8	MOCS1_HUMAN	molybdenum cofactor synthesis-step 1 protein	631	Molybdenum cofactor biosynthesis protein C.				Mo-molybdopterin cofactor biosynthetic process|Mo-molybdopterin cofactor biosynthetic process|water-soluble vitamin metabolic process	cytosol|molybdopterin synthase complex|nucleus	4 iron, 4 sulfur cluster binding|4 iron, 4 sulfur cluster binding|catalytic activity|GTP binding|metal ion binding			ovary(1)|liver(1)|central_nervous_system(1)	3	Ovarian(28;0.0355)|Colorectal(47;0.196)					GATGGAAGTCCCCCCGCTGAC	0.587													96	109					0	0	1	0	0
MOCS1	4337	broad.mit.edu	37	6	39895144	39895144	+	Silent	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr6:39895144G>A	uc003opb.2	-	1	312	c.174C>T	c.(172-174)TCC>TCT	p.S58S	MOCS1_uc003opa.2_Silent_p.S58S|MOCS1_uc003opc.2_Silent_p.S58S|MOCS1_uc003opd.2_Silent_p.S58S|MOCS1_uc003ope.2_Intron	NM_005942	NP_005933	Q9NZB8	MOCS1_HUMAN	molybdenum cofactor synthesis-step 1 protein	58	Molybdenum cofactor biosynthesis protein A.				Mo-molybdopterin cofactor biosynthetic process|Mo-molybdopterin cofactor biosynthetic process|water-soluble vitamin metabolic process	cytosol|molybdopterin synthase complex|nucleus	4 iron, 4 sulfur cluster binding|4 iron, 4 sulfur cluster binding|catalytic activity|GTP binding|metal ion binding			ovary(1)|liver(1)|central_nervous_system(1)	3	Ovarian(28;0.0355)|Colorectal(47;0.196)					TGAGGAAGGCGGAGAAGGGGG	0.652													8	25					0	0	1	0	0
LRFN2	57497	broad.mit.edu	37	6	40359748	40359748	+	Silent	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr6:40359748C>T	uc003oph.1	-	3	2769	c.2304G>A	c.(2302-2304)GAG>GAA	p.E768E		NM_020737	NP_065788	Q9ULH4	LRFN2_HUMAN	leucine rich repeat and fibronectin type III	768	Cytoplasmic (Potential).					cell junction|integral to membrane|postsynaptic membrane				ovary(2)|skin(1)	3	Ovarian(28;0.0418)|Colorectal(47;0.196)					CCAGGTCACTCTCCTCAAAGG	0.637													37	50					0	0	1	0	0
CUL7	9820	broad.mit.edu	37	6	43014252	43014252	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr6:43014252G>A	uc003otq.2	-	11	2788	c.2485C>T	c.(2485-2487)CAG>TAG	p.Q829*	CUL7_uc010jyg.2_Nonsense_Mutation_p.Q108*|CUL7_uc011dvb.1_Nonsense_Mutation_p.Q913*|CUL7_uc010jyh.2_Intron|KLC4_uc003otr.1_Intron	NM_014780	NP_055595	Q14999	CUL7_HUMAN	cullin 7	829	DOC.				interspecies interaction between organisms|ubiquitin-dependent protein catabolic process|vasculogenesis	anaphase-promoting complex|mitochondrion	ubiquitin protein ligase binding			ovary(3)|kidney(1)	4			all cancers(41;0.00231)|Colorectal(64;0.00237)|COAD - Colon adenocarcinoma(64;0.00473)|OV - Ovarian serous cystadenocarcinoma(102;0.0442)|KIRC - Kidney renal clear cell carcinoma(15;0.133)|Kidney(15;0.188)			CACGAACCCTGGCACAGGTAT	0.567													20	34					0	0	1	0	0
ENPP5	59084	broad.mit.edu	37	6	46129247	46129247	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr6:46129247G>A	uc003oxz.1	-	4	1458	c.1250C>T	c.(1249-1251)CCT>CTT	p.P417L	ENPP5_uc003oya.1_Missense_Mutation_p.P417L|ENPP5_uc011dvz.1_Missense_Mutation_p.P323L|ENPP5_uc010jzc.1_3'UTR	NM_021572	NP_067547	Q9UJA9	ENPP5_HUMAN	ectonucleotide pyrophosphatase/phosphodiesterase	417						extracellular region|integral to membrane	hydrolase activity				0						AACACTACCAGGGAGGAGTAT	0.438													28	19					0	0	1	0	0
MEP1A	4224	broad.mit.edu	37	6	46802353	46802353	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr6:46802353G>A	uc010jzh.1	+	12	1690	c.1648G>A	c.(1648-1650)GTG>ATG	p.V550M	MEP1A_uc011dwg.1_Missense_Mutation_p.V272M|MEP1A_uc011dwh.1_Missense_Mutation_p.V578M|MEP1A_uc011dwi.1_Missense_Mutation_p.V450M	NM_005588	NP_005579	Q16819	MEP1A_HUMAN	meprin A alpha precursor	550	MATH.|Extracellular (Potential).				digestion|proteolysis	extracellular space|integral to plasma membrane|soluble fraction	metalloendopeptidase activity|zinc ion binding			pancreas(2)|ovary(1)	3			Lung(136;0.192)			GCCGTCCAGGGTGGGAACCTA	0.438													55	68					0	0	1	0	0
MUT	4594	broad.mit.edu	37	6	49419406	49419407	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr6:49419406_49419407GG>AA	uc003ozg.3	-	6	1359_1360	c.1104_1105CC>TT	c.(1102-1107)GTCCGT>GTTTGT	p.R369C		NM_000255	NP_000246	P22033	MUTA_HUMAN	methylmalonyl Coenzyme A mutase precursor	369			R -> H (in MMAM; mut- and mut0).|R -> C (in MMAM; mut0).		fatty acid beta-oxidation	mitochondrial matrix	cobalamin binding|metal ion binding|methylmalonyl-CoA mutase activity				0	Lung NSC(77;0.0376)				Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)	ATTGCAGTACGGACAATATTAT	0.351													14	20					0	0	1	0	0
PGK2	5232	broad.mit.edu	37	6	49754528	49754528	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr6:49754528G>A	uc003ozu.2	-	1	480	c.373C>T	c.(373-375)CAT>TAT	p.H125Y		NM_138733	NP_620061	P07205	PGK2_HUMAN	phosphoglycerate kinase 2	125					glycolysis	cytosol	ATP binding|phosphoglycerate kinase activity			ovary(1)	1	Lung NSC(77;0.0402)					TCCTCCACATGAAAGCGCAGG	0.512													31	38					0	0	1	0	0
MCART3P	442229	broad.mit.edu	37	6	66498897	66498897	+	RNA	SNP	T	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr6:66498897T>A	uc011dxw.1	+	1		c.1126T>A				NR_026540				Homo sapiens mitochondrial carrier triple repeat 3 pseudogene, mRNA (cDNA clone IMAGE:4821649).												0						GAGGTCCCATTAAGGAGCATC	0.433													18	14					0	0	1	0	0
FBXL4	26235	broad.mit.edu	37	6	99365508	99365508	+	Silent	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr6:99365508G>A	uc003ppf.1	-	4	958	c.600C>T	c.(598-600)TTC>TTT	p.F200F	FBXL4_uc003ppg.1_Silent_p.F200F|FBXL4_uc003pph.1_Intron	NM_012160	NP_036292	Q9UKA2	FBXL4_HUMAN	F-box and leucine-rich repeat protein 4	200					ubiquitin-dependent protein catabolic process	cytoplasm|nucleus|ubiquitin ligase complex				skin(2)	2		all_cancers(76;1.56e-06)|Acute lymphoblastic leukemia(125;4.93e-10)|all_hematologic(75;3.55e-07)|all_epithelial(107;0.00893)|Colorectal(196;0.069)|Lung NSC(302;0.197)		BRCA - Breast invasive adenocarcinoma(108;0.0413)		GATTTGTGGGGAAATTTATCT	0.413													28	69					0	0	1	0	0
WASF1	8936	broad.mit.edu	37	6	110422958	110422958	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr6:110422958G>A	uc003ptv.1	-	10	2192	c.1355C>T	c.(1354-1356)CCC>CTC	p.P452L	WASF1_uc003ptw.1_Missense_Mutation_p.P452L|WASF1_uc003ptx.1_Missense_Mutation_p.P452L|WASF1_uc003pty.1_Missense_Mutation_p.P452L	NM_003931	NP_003922	Q92558	WASF1_HUMAN	Wiskott-Aldrich syndrome protein family member	452					actin filament polymerization|cellular component movement	actin cytoskeleton	actin binding				0		all_cancers(87;1.18e-05)|Acute lymphoblastic leukemia(125;2.66e-08)|all_hematologic(75;1.13e-06)|all_epithelial(87;0.00159)|Colorectal(196;0.0488)		OV - Ovarian serous cystadenocarcinoma(136;0.0364)|Epithelial(106;0.051)|all cancers(137;0.0687)		TAGCCCAGAGGGAGGATGAGC	0.557													52	84					0	0	1	0	0
SMPDL3A	10924	broad.mit.edu	37	6	123116922	123116922	+	Silent	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr6:123116922C>T	uc003pzg.2	+	2	734	c.213C>T	c.(211-213)TCC>TCT	p.S71S	SMPDL3A_uc003pzh.2_Intron	NM_006714	NP_006705	Q92484	ASM3A_HUMAN	acid sphingomyelinase-like phosphodiesterase 3A	71					sphingomyelin catabolic process	extracellular space	hydrolase activity, acting on glycosyl bonds|protein binding|sphingomyelin phosphodiesterase activity				0				GBM - Glioblastoma multiforme(226;0.236)		CAAATGCCTCCAACCCTGGCC	0.398													16	33					0	0	1	0	0
PTPRK	5796	broad.mit.edu	37	6	128304509	128304509	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr6:128304509G>A	uc003qbk.2	-	23	3629	c.3262C>T	c.(3262-3264)CGA>TGA	p.R1088*	PTPRK_uc003qbj.2_Nonsense_Mutation_p.R1089*|PTPRK_uc010kfc.2_Nonsense_Mutation_p.R1095*|PTPRK_uc011ebu.1_Nonsense_Mutation_p.R1111*	NM_002844	NP_002835	Q15262	PTPRK_HUMAN	protein tyrosine phosphatase, receptor type, K	1088	Substrate binding (By similarity).|Tyrosine-protein phosphatase 1.|Cytoplasmic (Potential).				cell migration|cellular response to reactive oxygen species|cellular response to UV|focal adhesion assembly|negative regulation of cell cycle|negative regulation of cell migration|negative regulation of keratinocyte proliferation|negative regulation of transcription, DNA-dependent|protein localization at cell surface|transforming growth factor beta receptor signaling pathway	adherens junction|cell surface|cell-cell junction|integral to plasma membrane|leading edge membrane	beta-catenin binding|gamma-catenin binding|protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(3)|skin(2)|pancreas(1)|kidney(1)|central_nervous_system(1)	8				all cancers(137;0.0118)|GBM - Glioblastoma multiforme(226;0.0372)|OV - Ovarian serous cystadenocarcinoma(136;0.24)		CAGCCAGTTCGTCCAGCACCA	0.383													43	50					0	0	1	0	0
LAMA2	3908	broad.mit.edu	37	6	129419523	129419523	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr6:129419523C>T	uc003qbn.2	+	4	707	c.602C>T	c.(601-603)TCA>TTA	p.S201L	LAMA2_uc003qbo.2_Missense_Mutation_p.S201L	NM_000426	NP_000417	P24043	LAMA2_HUMAN	laminin alpha 2 subunit isoform a precursor	201	Laminin N-terminal.				cell adhesion|muscle organ development|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|breast(1)|skin(1)	10				OV - Ovarian serous cystadenocarcinoma(136;0.178)|all cancers(137;0.245)		ATCTGCACTTCATTTTACTCC	0.433													44	39					0	0	1	0	0
ENPP1	5167	broad.mit.edu	37	6	132207842	132207842	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr6:132207842C>T	uc011ecf.1	+	24	2605	c.2585C>T	c.(2584-2586)ACT>ATT	p.T862I		NM_006208	NP_006199	P22413	ENPP1_HUMAN	ectonucleotide pyrophosphatase/phosphodiesterase	862	Nuclease.|Extracellular (Potential).				3'-phosphoadenosine 5'-phosphosulfate metabolic process|biomineral tissue development|cellular phosphate ion homeostasis|cellular response to insulin stimulus|generation of precursor metabolites and energy|immune response|inorganic diphosphate transport|negative regulation of cell growth|negative regulation of fat cell differentiation|negative regulation of glucose import|negative regulation of glycogen biosynthetic process|negative regulation of insulin receptor signaling pathway|negative regulation of protein autophosphorylation|nucleoside triphosphate catabolic process|phosphate metabolic process|sequestering of triglyceride|water-soluble vitamin metabolic process	basolateral plasma membrane|cell surface|extracellular space|integral to membrane	ATP binding|insulin receptor binding|metal ion binding|nucleic acid binding|nucleoside-triphosphate diphosphatase activity|nucleotide diphosphatase activity|phosphodiesterase I activity|polysaccharide binding|protein homodimerization activity|scavenger receptor activity			upper_aerodigestive_tract(2)|ovary(2)	4	Breast(56;0.0505)			GBM - Glioblastoma multiforme(226;0.0216)|OV - Ovarian serous cystadenocarcinoma(155;0.022)	Amifostine(DB01143)|Ribavirin(DB00811)	CCTCACAGGACTGATAACAGC	0.383													30	32					0	0	1	0	0
MAP7	9053	broad.mit.edu	37	6	136677896	136677896	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr6:136677896C>T	uc003qgz.2	-	16	2195	c.1949G>A	c.(1948-1950)GGA>GAA	p.G650E	MAP7_uc011edf.1_Missense_Mutation_p.G635E|MAP7_uc011edg.1_Missense_Mutation_p.G680E|MAP7_uc010kgu.2_Missense_Mutation_p.G672E|MAP7_uc011edh.1_Missense_Mutation_p.G635E|MAP7_uc010kgv.2_Missense_Mutation_p.G672E|MAP7_uc010kgs.2_Missense_Mutation_p.G504E|MAP7_uc011edi.1_Missense_Mutation_p.G504E|MAP7_uc010kgq.1_Missense_Mutation_p.G556E|MAP7_uc003qha.1_Missense_Mutation_p.G613E	NM_003980	NP_003971	Q14244	MAP7_HUMAN	microtubule-associated protein 7	650					establishment or maintenance of cell polarity|microtubule cytoskeleton organization|protein localization in plasma membrane|response to osmotic stress	basolateral plasma membrane|microtubule|microtubule associated complex|nucleus|perinuclear region of cytoplasm	receptor binding|structural molecule activity				0	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00199)|OV - Ovarian serous cystadenocarcinoma(155;0.00643)		CTTTCCATTTCCCGGAGCGTT	0.443													26	30					0	0	1	0	0
MAP3K5	4217	broad.mit.edu	37	6	136904796	136904796	+	Missense_Mutation	SNP	C	T	T	rs78303756		TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr6:136904796C>T	uc003qhc.2	-	24	3669	c.3308G>A	c.(3307-3309)CGA>CAA	p.R1103Q	MAP3K5_uc011edj.1_Missense_Mutation_p.R350Q|MAP3K5_uc011edk.1_Missense_Mutation_p.R949Q	NM_005923	NP_005914	Q99683	M3K5_HUMAN	mitogen-activated protein kinase kinase kinase	1103					activation of JUN kinase activity|activation of MAPKK activity|cellular response to hydrogen peroxide|induction of apoptosis by extracellular signals|interspecies interaction between organisms		ATP binding|caspase activator activity|magnesium ion binding|MAP kinase kinase kinase activity|protein homodimerization activity|protein phosphatase binding			ovary(2)|skin(2)|lung(1)	5	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00137)|OV - Ovarian serous cystadenocarcinoma(155;0.00569)		TATGATTTTTCGGTCAGTGGA	0.453													46	42					0	0	1	0	0
HECA	51696	broad.mit.edu	37	6	139487440	139487440	+	Silent	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr6:139487440C>T	uc003qin.2	+	2	576	c.291C>T	c.(289-291)CCC>CCT	p.P97P		NM_016217	NP_057301	Q9UBI9	HDC_HUMAN	headcase	97					respiratory tube development						0				GBM - Glioblastoma multiforme(68;0.000252)|OV - Ovarian serous cystadenocarcinoma(155;0.000387)		GTGCCACTCCCCTGATCTGCA	0.458													87	95					0	0	1	0	0
SYNE1	23345	broad.mit.edu	37	6	152770686	152770686	+	Silent	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr6:152770686C>T	uc010kiw.2	-	28	4088	c.3486G>A	c.(3484-3486)GAG>GAA	p.E1162E	SYNE1_uc003qot.3_Silent_p.E1169E|SYNE1_uc003qou.3_Silent_p.E1162E|SYNE1_uc010kjb.1_Silent_p.E1145E|SYNE1_uc003qow.2_Silent_p.E457E|SYNE1_uc003qox.1_Silent_p.E678E	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	1162	Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		CACGTTTAACCTCTCCGTGGT	0.403										HNSCC(10;0.0054)			38	41					0	0	1	0	0
SUN1	23353	broad.mit.edu	37	7	899919	899919	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr7:899919G>A	uc011jvp.1	+	15	1758	c.1679G>A	c.(1678-1680)CGG>CAG	p.R560Q	GET4_uc003sjj.1_RNA|SUN1_uc003sjf.2_Missense_Mutation_p.R477Q|SUN1_uc011jvq.1_Missense_Mutation_p.R457Q|SUN1_uc003sjg.2_Missense_Mutation_p.R465Q|SUN1_uc011jvr.1_Missense_Mutation_p.R358Q|SUN1_uc003sji.2_Missense_Mutation_p.R398Q|SUN1_uc003sjk.2_Missense_Mutation_p.R199Q	NM_001130965	NP_001124437	O94901	SUN1_HUMAN	unc-84 homolog A isoform a	587	Perinuclear space.				cytoskeletal anchoring at nuclear membrane|nuclear matrix anchoring at nuclear membrane	integral to membrane|nuclear inner membrane|SUN-KASH complex	protein binding				0						CAGATCCTGCGGAACGTCACC	0.597													20	26					0	0	1	0	0
INTS1	26173	broad.mit.edu	37	7	1516529	1516529	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr7:1516529G>A	uc003skn.2	-	36	5065	c.4964C>T	c.(4963-4965)TCG>TTG	p.S1655L	INTS1_uc003skm.1_5'Flank	NM_001080453	NP_001073922	Q8N201	INT1_HUMAN	integrator complex subunit 1	1655					snRNA processing	integral to membrane|integrator complex|nuclear membrane					0		Ovarian(82;0.0253)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0181)|OV - Ovarian serous cystadenocarcinoma(56;6.99e-15)		GGGACGGAACGAGGGCACCTG	0.637													10	14					0	0	1	0	0
CARD11	84433	broad.mit.edu	37	7	2962946	2962946	+	Silent	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr7:2962946G>A	uc003smv.2	-	16	2366	c.1962C>T	c.(1960-1962)ACC>ACT	p.T654T		NM_032415	NP_115791	Q9BXL7	CAR11_HUMAN	caspase recruitment domain family, member 11	654					positive regulation of cytokine production|positive regulation of NF-kappaB transcription factor activity|regulation of apoptosis|T cell costimulation|T cell receptor signaling pathway	cytosol|membrane raft|plasma membrane	CARD domain binding|guanylate kinase activity			haematopoietic_and_lymphoid_tissue(43)|ovary(2)|kidney(2)|skin(2)|central_nervous_system(1)	50		Ovarian(82;0.0115)		OV - Ovarian serous cystadenocarcinoma(56;8.44e-14)		GCCCCACAGAGGTGACCGAAG	0.647			Mis		DLBCL								24	30					0	0	1	0	0
ISPD	729920	broad.mit.edu	37	7	16298607	16298607	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr7:16298607G>A	uc010ktx.2	-	7	964	c.964C>T	c.(964-966)CAT>TAT	p.H322Y	ISPD_uc010kty.2_Missense_Mutation_p.H272Y|uc003stf.2_Intron	NM_001101426	NP_001094896	A4D126	ISPD_HUMAN	notch1-induced protein isoform a	322					isoprenoid biosynthetic process		nucleotidyltransferase activity			ovary(1)	1						CTGCCAGCATGACCCAGAGCC	0.343										Multiple Myeloma(15;0.18)			12	23					0	0	1	0	0
ADCYAP1R1	117	broad.mit.edu	37	7	31126557	31126557	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr7:31126557G>A	uc003tca.1	+	11	1047	c.824G>A	c.(823-825)GGG>GAG	p.G275E	ADCYAP1R1_uc003tcb.1_Missense_Mutation_p.G254E|ADCYAP1R1_uc003tcc.1_Missense_Mutation_p.G275E|ADCYAP1R1_uc003tcd.1_Missense_Mutation_p.G275E|ADCYAP1R1_uc003tce.1_Missense_Mutation_p.G275E|ADCYAP1R1_uc003tcf.1_5'UTR	NM_001118	NP_001109	P41586	PACR_HUMAN	adenylate cyclase activating polypeptide 1	275	Helical; Name=4; (Potential).				activation of adenylate cyclase activity|cell differentiation|nerve growth factor receptor signaling pathway|spermatogenesis	integral to plasma membrane	vasoactive intestinal polypeptide receptor activity			ovary(1)	1						GTTCTCCCAGGGACCCCAACT	0.537													45	74					0	0	1	0	0
ELMO1	9844	broad.mit.edu	37	7	37252982	37252982	+	Silent	SNP	G	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr7:37252982G>T	uc003tfk.1	-	12	1219	c.912C>A	c.(910-912)CTC>CTA	p.L304L	ELMO1_uc011kbc.1_Silent_p.L208L|ELMO1_uc010kxg.1_Silent_p.L304L	NM_014800	NP_055615	Q92556	ELMO1_HUMAN	engulfment and cell motility 1 isoform 1	304					actin cytoskeleton organization|apoptosis|cellular component movement|phagocytosis, engulfment|Rac protein signal transduction|regulation of defense response to virus by virus|viral reproduction	cytoskeleton|cytosol|plasma membrane	SH3 domain binding			ovary(3)|skin(2)|upper_aerodigestive_tract(1)	6						TGTCTTCCAGGAGGTTAAAGG	0.502													47	42					3.07002e-29	3.11632e-29	1	1	0
GLI3	2737	broad.mit.edu	37	7	42005498	42005498	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr7:42005498C>T	uc011kbh.1	-	15	3264	c.3173G>A	c.(3172-3174)CGA>CAA	p.R1058Q	GLI3_uc011kbg.1_Missense_Mutation_p.R999Q	NM_000168	NP_000159	P10071	GLI3_HUMAN	GLI-Kruppel family member GLI3	1058					negative regulation of alpha-beta T cell differentiation|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of smoothened signaling pathway|negative regulation of transcription from RNA polymerase II promoter|negative thymic T cell selection|positive regulation of alpha-beta T cell differentiation|positive regulation of transcription from RNA polymerase II promoter|thymocyte apoptosis	cilium|cytosol|nucleolus	beta-catenin binding|histone acetyltransferase binding|histone deacetylase binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(11)|ovary(3)|large_intestine(2)|central_nervous_system(1)|kidney(1)|pancreas(1)	19						GTGGAAGTTTCGGGACTGGCC	0.632									Greig_Cephalopolysyndactyly|Pallister-Hall_syndrome				27	31					0	0	1	0	0
ADCY1	107	broad.mit.edu	37	7	45753484	45753484	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr7:45753484G>A	uc003tne.3	+	20	3268	c.3250G>A	c.(3250-3252)GGC>AGC	p.G1084S		NM_021116	NP_066939	Q08828	ADCY1_HUMAN	adenylate cyclase 1	1084	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|calmodulin binding|metal ion binding			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6					Adenosine(DB00640)|Adenosine monophosphate(DB00131)|Adenosine triphosphate(DB00171)	TGGCCTTCAGGGCAGACGTCC	0.607													43	53					0	0	1	0	0
VSTM2A	222008	broad.mit.edu	37	7	54617709	54617709	+	Silent	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr7:54617709C>T	uc010kzf.2	+	4	885	c.480C>T	c.(478-480)TTC>TTT	p.F160F	VSTM2A_uc010kze.2_Silent_p.F160F|VSTM2A_uc003tqc.3_Silent_p.F160F	NM_182546	NP_872352	Q8TAG5	VTM2A_HUMAN	V-set and transmembrane domain containing 2	160						extracellular region					0			STAD - Stomach adenocarcinoma(5;0.0525)			TGCAGGCCTTCGAAGCCTCGC	0.592													6	10					0	0	1	0	0
ZNF735	730291	broad.mit.edu	37	7	63679776	63679776	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr7:63679776G>A	uc011kdn.1	+	4	347	c.347G>A	c.(346-348)GGA>GAA	p.G116E		NM_001159524	NP_001152996	P0CB33	ZN735_HUMAN	zinc finger protein 735	116					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						AGAACATATGGAAAATGTGGA	0.338													16	48					0	0	1	0	0
UPK3B	80761	broad.mit.edu	37	7	76140168	76140168	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr7:76140168G>A	uc003ufq.2	+	1	424	c.199G>A	c.(199-201)GGG>AGG	p.G67R	UPK3B_uc003ufo.2_Intron|UPK3B_uc010ldk.1_Intron	NM_030570	NP_085047	Q9BT76	UPK3B_HUMAN	uroplakin 3B isoform a	67	Lumenal (Potential).				negative regulation of gene expression	integral to membrane|plasma membrane				central_nervous_system(1)	1		Myeloproliferative disorder(862;0.204)				GGCAGCCCCAGGGACCCCCAC	0.677													6	7					0	0	1	0	0
GRM3	2913	broad.mit.edu	37	7	86468428	86468428	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr7:86468428C>T	uc003uid.2	+	4	2697	c.1598C>T	c.(1597-1599)CCC>CTC	p.P533L	GRM3_uc010lef.2_Intron|GRM3_uc010leg.2_Missense_Mutation_p.P405L|GRM3_uc010leh.2_Missense_Mutation_p.P125L	NM_000840	NP_000831	Q14832	GRM3_HUMAN	glutamate receptor, metabotropic 3 precursor	533	Extracellular (Potential).				synaptic transmission	integral to plasma membrane				lung(4)|ovary(3)|central_nervous_system(2)|skin(2)|haematopoietic_and_lymphoid_tissue(1)|prostate(1)	13	Esophageal squamous(14;0.0058)|all_lung(186;0.132)|Lung NSC(181;0.142)				Acamprosate(DB00659)|Nicotine(DB00184)	ATTTGCATCCCCTGTGAACCC	0.537													91	115					0	0	1	0	0
ABCB4	5244	broad.mit.edu	37	7	87092077	87092077	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr7:87092077G>A	uc003uiv.1	-	4	359	c.283C>T	c.(283-285)CCA>TCA	p.P95S	ABCB4_uc003uiw.1_Missense_Mutation_p.P95S|ABCB4_uc003uix.1_Missense_Mutation_p.P95S|ABCB4_uc003uiy.2_Missense_Mutation_p.P95S	NM_018849	NP_061337	P21439	MDR3_HUMAN	ATP-binding cassette, subfamily B, member 4	95	Extracellular (By similarity).|ABC transmembrane type-1 1.		P -> S.		cellular lipid metabolic process	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus|membrane fraction	ATP binding|xenobiotic-transporting ATPase activity			ovary(4)|skin(1)|pancreas(1)	6	Esophageal squamous(14;0.0058)|all_lung(186;0.201)|Lung NSC(181;0.203)					TGCTTACCTGGAAAGGAGAAG	0.363													18	27					0	0	1	0	0
TRRAP	8295	broad.mit.edu	37	7	98547765	98547765	+	Silent	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr7:98547765C>T	uc003upp.2	+	37	5402	c.5193C>T	c.(5191-5193)TTC>TTT	p.F1731F	TRRAP_uc011kis.1_Silent_p.F1713F|TRRAP_uc003upr.2_Silent_p.F1430F	NM_003496	NP_003487	Q9Y4A5	TRRAP_HUMAN	transformation/transcription domain-associated	1731					histone deubiquitination|histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	NuA4 histone acetyltransferase complex|PCAF complex|STAGA complex|transcription factor TFTC complex	phosphotransferase activity, alcohol group as acceptor|protein binding|transcription cofactor activity			ovary(9)|large_intestine(8)|central_nervous_system(6)|skin(6)|stomach(5)|upper_aerodigestive_tract(1)|lung(1)|liver(1)	37	all_cancers(62;6.96e-09)|all_epithelial(64;4.86e-09)|Lung NSC(181;0.01)|all_lung(186;0.016)|Esophageal squamous(72;0.0274)		STAD - Stomach adenocarcinoma(171;0.215)			ACATGACATTCTTAAAAGAGT	0.438													27	39					0	0	1	0	0
PILRA	29992	broad.mit.edu	37	7	99971334	99971334	+	Silent	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr7:99971334C>T	uc003uuo.1	+	1	267	c.55C>T	c.(55-57)CTG>TTG	p.L19L	PILRA_uc011kjn.1_Silent_p.L19L|PILRA_uc011kjo.1_Silent_p.L19L|PILRA_uc003uup.1_Silent_p.L19L|PILRA_uc003uuq.1_Silent_p.L19L	NM_013439	NP_038467	Q9UKJ1	PILRA_HUMAN	paired immunoglobulin-like type 2 receptor alpha	19					interspecies interaction between organisms	extracellular region|integral to membrane|plasma membrane	protein binding|receptor activity			skin(1)	1	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					GCCAGCATTTCTGCAGCCTAG	0.647													47	59					0	0	1	0	0
MUC17	140453	broad.mit.edu	37	7	100675152	100675152	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr7:100675152C>T	uc003uxp.1	+	3	508	c.455C>T	c.(454-456)CCA>CTA	p.P152L	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	152	Extracellular (Potential).|Ser-rich.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					ATGTCAACACCAAGTGAAGAA	0.453													70	84					0	0	1	0	0
MUC17	140453	broad.mit.edu	37	7	100687008	100687008	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr7:100687008C>T	uc003uxp.1	+	3	12364	c.12311C>T	c.(12310-12312)TCC>TTC	p.S4104F	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	4104	Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					CGGACCACTTCCTTCCCCACG	0.547													59	82					0	0	1	0	0
SLC26A4	5172	broad.mit.edu	37	7	107329538	107329538	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr7:107329538G>A	uc003vep.2	+	9	1266	c.1042G>A	c.(1042-1044)GAG>AAG	p.E348K	SLC26A4_uc011kmb.1_5'Flank|SLC26A4_uc011kmc.1_5'Flank	NM_000441	NP_000432	O43511	S26A4_HUMAN	pendrin	348	Helical; (Potential).				regulation of pH|regulation of protein localization|sensory perception of sound	apical plasma membrane|integral to membrane	chloride transmembrane transporter activity|inorganic anion exchanger activity|iodide transmembrane transporter activity|secondary active sulfate transmembrane transporter activity			ovary(3)|central_nervous_system(2)|skin(2)	7						CTTGTTCTCGGAGATGCTGGC	0.443									Pendred_syndrome				44	72					0	0	1	0	0
PPP1R3A	5506	broad.mit.edu	37	7	113518701	113518701	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr7:113518701C>T	uc010ljy.1	-	4	2477	c.2446G>A	c.(2446-2448)GAA>AAA	p.E816K		NM_002711	NP_002702	Q16821	PPR3A_HUMAN	protein phosphatase 1, regulatory (inhibitor)	816					glycogen metabolic process	integral to membrane				lung(9)|ovary(9)|pancreas(7)|skin(6)|breast(2)|prostate(1)	34						TTCTCCATTTCATCTACACGT	0.373													28	39					0	0	1	0	0
ST7	7982	broad.mit.edu	37	7	116859158	116859158	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr7:116859158C>T	uc003vin.2	+	14	1640	c.1426C>T	c.(1426-1428)CCC>TCC	p.P476S	ST7_uc011knl.1_Missense_Mutation_p.P453S|ST7_uc003vio.2_Missense_Mutation_p.P453S|ST7_uc003viq.2_Missense_Mutation_p.P430S|ST7_uc011knm.1_Missense_Mutation_p.P433S|ST7_uc003vir.2_Missense_Mutation_p.P396S|ST7_uc011knn.1_Missense_Mutation_p.P424S	NM_021908	NP_068708	Q9NRC1	ST7_HUMAN	suppression of tumorigenicity 7 isoform b	476						integral to membrane	binding			central_nervous_system(1)|skin(1)	2	all_cancers(3;3.88e-07)|all_epithelial(6;3.42e-07)|Lung NSC(10;0.00072)|all_lung(10;0.000847)		STAD - Stomach adenocarcinoma(10;0.000512)	LUSC - Lung squamous cell carcinoma(290;0.133)		GATCCCTTATCCCTTGGAAAA	0.443													61	91					0	0	1	0	0
PLXNA4	91584	broad.mit.edu	37	7	131910920	131910920	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr7:131910920G>A	uc003vra.3	-	8	2211	c.1982C>T	c.(1981-1983)TCG>TTG	p.S661L		NM_020911	NP_065962	Q9HCM2	PLXA4_HUMAN	plexin A4 isoform 1	661	PSI 2.|Extracellular (Potential).					integral to membrane|intracellular|plasma membrane				ovary(1)	1						GGCCACTTACGAATTGTGGAC	0.512													67	91					0	0	1	0	0
CHRM2	1129	broad.mit.edu	37	7	136700305	136700305	+	Silent	SNP	T	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr7:136700305T>A	uc003vtf.1	+	4	1316	c.693T>A	c.(691-693)GTT>GTA	p.V231V	CHRM2_uc003vtg.1_Silent_p.V231V|CHRM2_uc003vtj.1_Silent_p.V231V|CHRM2_uc003vtk.1_Silent_p.V231V|CHRM2_uc003vtl.1_Silent_p.V231V|CHRM2_uc003vtm.1_Silent_p.V231V|CHRM2_uc003vti.1_Silent_p.V231V|CHRM2_uc003vto.1_Silent_p.V231V|CHRM2_uc003vtn.1_Silent_p.V231V|uc003vtp.1_Intron	NM_001006630	NP_001006631	P08172	ACM2_HUMAN	cholinergic receptor, muscarinic 2	231	Cytoplasmic (By similarity).				activation of phospholipase C activity by muscarinic acetylcholine receptor signaling pathway|G-protein signaling, coupled to cAMP nucleotide second messenger|nervous system development|regulation of heart contraction|response to virus	cell junction|integral to plasma membrane|postsynaptic membrane	muscarinic acetylcholine receptor activity|protein binding			ovary(4)|central_nervous_system(1)	5					Anisotropine Methylbromide(DB00517)|Atropine(DB00572)|Benzquinamide(DB00767)|Carbachol(DB00411)|Cryptenamine(DB00785)|Cyclizine(DB01176)|Desipramine(DB01151)|Diphenidol(DB01231)|Doxacurium(DB01334)|Doxacurium chloride(DB01135)|Flavoxate(DB01148)|Gallamine Triethiodide(DB00483)|Homatropine Methylbromide(DB00725)|Hyoscyamine(DB00424)|Ipratropium(DB00332)|Methotrimeprazine(DB01403)|Metixene(DB00340)|Metocurine(DB01336)|Mivacurium(DB01226)|Olanzapine(DB00334)|Oxybutynin(DB01062)|Oxyphencyclimine(DB00383)|Pilocarpine(DB01085)|Procyclidine(DB00387)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Rocuronium(DB00728)|Thiethylperazine(DB00372)|Tolterodine(DB01036)|Tridihexethyl(DB00505)|Triflupromazine(DB00508)	AAGACCCCGTTTCTCCAAGTC	0.483													16	12					0	0	1	0	0
KIAA1549	57670	broad.mit.edu	37	7	138601678	138601678	+	Silent	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr7:138601678G>A	uc011kql.1	-	2	2743	c.2694C>T	c.(2692-2694)TCC>TCT	p.S898S	KIAA1549_uc003vuk.3_Silent_p.S848S|KIAA1549_uc011kqj.1_Silent_p.S898S	NM_020910	NP_065961	Q9HCM3	K1549_HUMAN	hypothetical protein LOC57670 isoform 1	898						integral to membrane			KIAA1549/BRAF(229)	central_nervous_system(229)|pancreas(1)	230						CCATCAGGGTGGAGTCGAGGG	0.632			O	BRAF	pilocytic astrocytoma								13	17					0	0	1	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453137	+	Missense_Mutation	DNP	AC	TT	TT	rs121913378		TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr7:140453136_140453137AC>TT	uc003vwc.3	-	15	1859_1860	c.1798_1799GT>AA	c.(1798-1800)GTG>AAG	p.V600K		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAGA	0.366	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)|V600M(IGR1_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				26	36					0	0	1	0	0
KEL	3792	broad.mit.edu	37	7	142649599	142649599	+	Silent	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr7:142649599G>A	uc003wcb.2	-	10	1410	c.1200C>T	c.(1198-1200)CCC>CCT	p.P400P		NM_000420	NP_000411	P23276	KELL_HUMAN	Kell blood group, metallo-endopeptidase	400	Extracellular (Potential).				proteolysis|vasoconstriction	integral to membrane|plasma membrane	metal ion binding|metalloendopeptidase activity|protein binding			ovary(3)|central_nervous_system(1)	4	Melanoma(164;0.059)					TCCTCACCATGGGTGGTTGCT	0.557													45	44					0	0	1	0	0
CUL1	8454	broad.mit.edu	37	7	148456715	148456715	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr7:148456715G>A	uc010lpg.2	+	6	1136	c.610G>A	c.(610-612)GTT>ATT	p.V204I	CUL1_uc003wey.2_Missense_Mutation_p.V204I|CUL1_uc003wez.2_Missense_Mutation_p.V94I	NM_003592	NP_003583	Q13616	CUL1_HUMAN	cullin 1	204					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell cycle arrest|G1/S transition of mitotic cell cycle|induction of apoptosis by intracellular signals|interspecies interaction between organisms|negative regulation of cell proliferation|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein ubiquitination|S phase of mitotic cell cycle|SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	cytosol|nucleoplasm|SCF ubiquitin ligase complex	ubiquitin protein ligase binding			lung(1)	1	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00291)			GATTAGTGGAGTTGTACAGTC	0.299													20	21					0	0	1	0	0
ZNF425	155054	broad.mit.edu	37	7	148800729	148800729	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr7:148800729G>A	uc003wfj.2	-	4	2307	c.2234C>T	c.(2233-2235)GCC>GTC	p.A745V		NM_001001661	NP_001001661	Q6IV72	ZN425_HUMAN	zinc finger protein 425	745					negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|zinc ion binding			breast(2)|ovary(1)	3	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00463)			CTTCTCTTTGGCATGCACTGC	0.572													17	22					0	0	1	0	0
ZNF746	155061	broad.mit.edu	37	7	149174108	149174108	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr7:149174108G>A	uc003wfw.2	-	6	1014	c.743C>T	c.(742-744)CCG>CTG	p.P248L	ZNF746_uc010lpi.2_Missense_Mutation_p.P248L	NM_152557	NP_689770	Q6NUN9	ZN746_HUMAN	zinc finger protein 746 isoform 2	248					negative regulation of transcription, DNA-dependent|neuron death|regulation of cell death|transcription, DNA-dependent	cytoplasm|nucleus	transcription regulatory region DNA binding|ubiquitin protein ligase binding|zinc ion binding			ovary(2)|breast(1)	3	Melanoma(164;0.165)		OV - Ovarian serous cystadenocarcinoma(82;0.00358)			GGAGGTGGGCGGGATGGTGGT	0.617													20	30					0	0	1	0	0
ASB10	136371	broad.mit.edu	37	7	150883675	150883675	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr7:150883675C>T	uc003wjm.1	-	2	649	c.523G>A	c.(523-525)GAA>AAA	p.E175K	ASB10_uc003wjl.1_Missense_Mutation_p.E175K|ASB10_uc003wjn.1_Missense_Mutation_p.E115K	NM_001142459	NP_001135931	Q8WXI3	ASB10_HUMAN	ankyrin repeat and SOCS box-containing 10	130	ANK 1.				intracellular signal transduction						0			OV - Ovarian serous cystadenocarcinoma(82;0.00448)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		CGCAGGACTTCCGTGTGGCCA	0.677													4	10					0	0	1	0	0
RNF32	140545	broad.mit.edu	37	7	156447349	156447349	+	Silent	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr7:156447349C>T	uc003wmo.2	+	4	536	c.354C>T	c.(352-354)CTC>CTT	p.L118L	RNF32_uc010lql.1_RNA|RNF32_uc010lqm.2_Silent_p.L118L|RNF32_uc003wmp.2_Silent_p.L118L|RNF32_uc003wmq.2_Silent_p.L118L|RNF32_uc003wmr.2_Silent_p.L118L|RNF32_uc003wms.2_Silent_p.L118L|RNF32_uc003wmu.2_RNA|RNF32_uc003wmt.2_Silent_p.L118L	NM_030936	NP_112198	Q9H0A6	RNF32_HUMAN	ring finger protein 32	118						aggresome|endosome	protein binding|zinc ion binding				0	Ovarian(565;0.218)	all_hematologic(28;0.0592)	OV - Ovarian serous cystadenocarcinoma(82;0.00291)	UCEC - Uterine corpus endometrioid carcinoma (81;0.169)		AGCGCTCTCTCCTGCAAGGGG	0.532													29	43					0	0	1	0	0
RNF32	140545	broad.mit.edu	37	7	156451211	156451211	+	Missense_Mutation	SNP	A	C	C			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr7:156451211A>C	uc003wmo.2	+	7	813	c.631A>C	c.(631-633)AAA>CAA	p.K211Q	RNF32_uc010lql.1_RNA|RNF32_uc010lqm.2_Missense_Mutation_p.K211Q|RNF32_uc003wmq.2_Missense_Mutation_p.K211Q|RNF32_uc003wmr.2_Missense_Mutation_p.K211Q|RNF32_uc003wms.2_Missense_Mutation_p.K211Q|RNF32_uc003wmu.2_RNA|RNF32_uc003wmt.2_Missense_Mutation_p.K211Q	NM_030936	NP_112198	Q9H0A6	RNF32_HUMAN	ring finger protein 32	211	IQ.					aggresome|endosome	protein binding|zinc ion binding				0	Ovarian(565;0.218)	all_hematologic(28;0.0592)	OV - Ovarian serous cystadenocarcinoma(82;0.00291)	UCEC - Uterine corpus endometrioid carcinoma (81;0.169)		AAACCTGAGGAAAACAGTACC	0.373													28	40					0	0	1	0	0
PTPRN2	5799	broad.mit.edu	37	7	157691406	157691406	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr7:157691406C>T	uc003wno.2	-	12	1868	c.1747G>A	c.(1747-1749)GAA>AAA	p.E583K	PTPRN2_uc003wnp.2_Missense_Mutation_p.E566K|PTPRN2_uc003wnq.2_Missense_Mutation_p.E554K|PTPRN2_uc003wnr.2_Missense_Mutation_p.E545K|PTPRN2_uc011kwa.1_Missense_Mutation_p.E606K	NM_002847	NP_002838	Q92932	PTPR2_HUMAN	protein tyrosine phosphatase, receptor type, N	583	Extracellular (Potential).					integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(4)|large_intestine(1)|pleura(1)|skin(1)	7	all_neural(206;0.181)	all_cancers(7;8.99e-13)|all_epithelial(9;2.4e-06)|all_hematologic(28;0.0155)|Breast(660;0.132)	OV - Ovarian serous cystadenocarcinoma(82;0.00463)	STAD - Stomach adenocarcinoma(7;0.0875)		CCAGAGGTTTCCTCCAGTTTG	0.512													84	109					0	0	1	0	0
ARHGEF10	9639	broad.mit.edu	37	8	1814708	1814708	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr8:1814708C>T	uc003wpr.2	+	6	740	c.562C>T	c.(562-564)CGA>TGA	p.R188*	ARHGEF10_uc003wpq.1_Nonsense_Mutation_p.R213*|ARHGEF10_uc003wps.2_Nonsense_Mutation_p.R189*|ARHGEF10_uc003wpt.2_Nonsense_Mutation_p.R103*|ARHGEF10_uc010lrd.1_Nonsense_Mutation_p.R103*|ARHGEF10_uc003wpu.2_Nonsense_Mutation_p.R102*	NM_014629	NP_055444	O15013	ARHGA_HUMAN	Rho guanine nucleotide exchange factor 10	213					centrosome duplication|myelination in peripheral nervous system|positive regulation of GTP catabolic process|positive regulation of stress fiber assembly|regulation of Rho protein signal transduction|spindle assembly involved in mitosis	centrosome|cytosol|soluble fraction	kinesin binding|Rho guanyl-nucleotide exchange factor activity			large_intestine(1)	1		Colorectal(14;3.46e-05)|Renal(68;0.000518)|Ovarian(12;0.00409)|Myeloproliferative disorder(644;0.0255)|Hepatocellular(245;0.0834)		COAD - Colon adenocarcinoma(149;1.62e-05)|BRCA - Breast invasive adenocarcinoma(11;1.68e-05)|KIRC - Kidney renal clear cell carcinoma(542;0.00361)|READ - Rectum adenocarcinoma(644;0.0718)		TCAAGTCGGTCGAGAGGACAG	0.532													44	94					0	0	1	0	0
CSMD1	64478	broad.mit.edu	37	8	2796226	2796226	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr8:2796226C>T	uc011kwk.1	-	70	10969	c.10579G>A	c.(10579-10581)GAA>AAA	p.E3527K	CSMD1_uc011kwj.1_Missense_Mutation_p.E2841K|CSMD1_uc010lrg.2_Missense_Mutation_p.E1418K	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	3527	Cytoplasmic (Potential).					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		TTGCTGTTTTCATGCCCAGCA	0.403													6	11					0	0	1	0	0
SGK223	157285	broad.mit.edu	37	8	8234635	8234635	+	Silent	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr8:8234635C>T	uc003wsh.3	-	2	1284	c.1284G>A	c.(1282-1284)CAG>CAA	p.Q428Q		NM_001080826	NP_001074295	Q86YV5	SG223_HUMAN	pragmin	428							ATP binding|non-membrane spanning protein tyrosine kinase activity				0						CTATCTTGGCCTGTGACTTGG	0.637													27	44					0	0	1	0	0
RP1L1	94137	broad.mit.edu	37	8	10468714	10468714	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr8:10468714G>A	uc003wtc.2	-	4	3123	c.2894C>T	c.(2893-2895)CCA>CTA	p.P965L		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	965					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		GGGCTCTTCTGGAATGTTGTC	0.642													37	51					0	0	1	0	0
PDLIM2	64236	broad.mit.edu	37	8	22449084	22449084	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr8:22449084C>T	uc003xby.2	+	9	1184	c.784C>T	c.(784-786)CCC>TCC	p.P262S	PDLIM2_uc003xbz.2_Missense_Mutation_p.P262S|PDLIM2_uc003xca.2_Intron|PDLIM2_uc003xcb.2_Missense_Mutation_p.P262S|PDLIM2_uc003xcc.1_Missense_Mutation_p.P262S|PDLIM2_uc003xcd.1_3'UTR	NM_021630	NP_067643	Q96JY6	PDLI2_HUMAN	PDZ and LIM domain 2 isoform 2	262						actin cytoskeleton|cell surface|cytoplasm|focal adhesion|nucleus	zinc ion binding				0		Prostate(55;0.0421)|Breast(100;0.102)|all_epithelial(46;0.142)		BRCA - Breast invasive adenocarcinoma(99;0.00579)|Colorectal(74;0.0152)|COAD - Colon adenocarcinoma(73;0.0626)		AGCCTTCTTGCCCAGCTCACT	0.642													25	14					0	0	1	0	0
ADAM28	10863	broad.mit.edu	37	8	24167683	24167683	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr8:24167683C>T	uc003xdy.2	+	4	318	c.235C>T	c.(235-237)CTT>TTT	p.L79F	ADAM28_uc003xdx.2_Missense_Mutation_p.L79F|ADAM28_uc011kzz.1_5'UTR|ADAM28_uc011laa.1_RNA	NM_014265	NP_055080	Q9UKQ2	ADA28_HUMAN	ADAM metallopeptidase domain 28 isoform 1	79					proteolysis|spermatogenesis	extracellular region|integral to membrane|plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|lung(1)|central_nervous_system(1)	5		Prostate(55;0.0959)		Colorectal(74;0.0129)|COAD - Colon adenocarcinoma(73;0.0434)|BRCA - Breast invasive adenocarcinoma(99;0.175)		CAGGAACCTCCTTGCACCAGG	0.398													22	20					0	0	1	0	0
ADAM7	8756	broad.mit.edu	37	8	24358371	24358371	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr8:24358371C>T	uc003xeb.2	+	19	2184	c.2071C>T	c.(2071-2073)CGT>TGT	p.R691C	ADAM7_uc003xec.2_Missense_Mutation_p.R463C	NM_003817	NP_003808	Q9H2U9	ADAM7_HUMAN	a disintegrin and metalloproteinase domain 7	691	Cytoplasmic (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding	p.R691H(1)		skin(3)|ovary(1)|kidney(1)	5		Prostate(55;0.0181)		Colorectal(74;0.0199)|COAD - Colon adenocarcinoma(73;0.0754)|BRCA - Breast invasive adenocarcinoma(99;0.182)		ACTATTAGTTCGTTACCGAAA	0.373													40	47					0	0	1	0	0
EBF2	64641	broad.mit.edu	37	8	25745418	25745418	+	Silent	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr8:25745418G>A	uc003xes.1	-	9	839	c.822C>T	c.(820-822)ATC>ATT	p.I274I	PPP2R2A_uc003xek.2_Intron|EBF2_uc010lug.1_RNA	NM_022659	NP_073150	Q9HAK2	COE2_HUMAN	early B-cell factor 2	274	IPT/TIG.				multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|metal ion binding			ovary(3)|skin(1)	4		all_cancers(63;0.0989)|Ovarian(32;2.74e-05)|all_epithelial(46;0.0608)|Prostate(55;0.0845)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0277)|Epithelial(17;3.29e-10)|Colorectal(74;0.00383)|COAD - Colon adenocarcinoma(73;0.00738)		AGTTGTCCCCGATGATGATGA	0.498													36	54					0	0	1	0	0
RAB11FIP1	80223	broad.mit.edu	37	8	37729818	37729818	+	Nonsense_Mutation	SNP	A	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr8:37729818A>T	uc003xkm.1	-	4	2546	c.2502T>A	c.(2500-2502)TGT>TGA	p.C834*	RAB11FIP1_uc010lvz.1_Intron|RAB11FIP1_uc003xkn.1_Intron|RAB11FIP1_uc003xkl.1_Nonsense_Mutation_p.C163*|RAB11FIP1_uc003xko.1_Nonsense_Mutation_p.C163*|RAB11FIP1_uc003xkp.1_Intron	NM_001002814	NP_001002814	Q6WKZ4	RFIP1_HUMAN	RAB11 family interacting protein 1 isoform 3	834					protein transport	centrosome|phagocytic vesicle membrane|recycling endosome	protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3		Lung NSC(58;0.118)|all_lung(54;0.195)	LUSC - Lung squamous cell carcinoma(8;3.62e-11)			GCTCCTGGGGACAACTGCTGT	0.572													41	36					0	0	1	0	0
IDO2	169355	broad.mit.edu	37	8	39845390	39845390	+	Silent	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr8:39845390G>A	uc010lwy.1	+	7	731	c.489G>A	c.(487-489)GGG>GGA	p.G163G	IDO2_uc003xno.1_RNA|IDO2_uc010lwz.1_Intron|IDO2_uc003xnp.1_5'UTR	NM_194294	NP_919270	Q6ZQW0	I23O2_HUMAN	indoleamine-pyrrole 2,3 dioxygenase-like 1	150					tryptophan catabolic process to kynurenine	cytosol	heme binding|indoleamine 2,3-dioxygenase activity|tryptophan 2,3-dioxygenase activity			ovary(2)	2						CCTTCCCAAGGAACCTGGAGA	0.512													6	9					0	0	1	0	0
RP1	6101	broad.mit.edu	37	8	55537388	55537388	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr8:55537388G>A	uc003xsd.1	+	4	1094	c.946G>A	c.(946-948)GAA>AAA	p.E316K	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	316					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			ATATCCTTCTGAAGATGATAT	0.303													11	11					0	0	1	0	0
CYP7B1	9420	broad.mit.edu	37	8	65527679	65527679	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr8:65527679C>T	uc003xvj.2	-	4	1165	c.961G>A	c.(961-963)GAA>AAA	p.E321K		NM_004820	NP_004811	O75881	CP7B1_HUMAN	cytochrome P450, family 7, subfamily B,	321					bile acid biosynthetic process|cell death|cholesterol metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	25-hydroxycholesterol 7alpha-hydroxylase activity|electron carrier activity|heme binding|oxysterol 7-alpha-hydroxylase activity			ovary(3)	3		all_cancers(86;0.217)|Lung NSC(129;0.0521)|all_lung(136;0.0906)|all_epithelial(80;0.215)				CGGTCAATTTCGTCACGCACT	0.488													28	49					0	0	1	0	0
DCAF4L2	138009	broad.mit.edu	37	8	88886136	88886136	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr8:88886136C>T	uc003ydz.2	-	1	161	c.64G>A	c.(64-66)GGA>AGA	p.G22R		NM_152418	NP_689631	Q8NA75	DC4L2_HUMAN	WD repeat domain 21C	22										ovary(1)	1						GCATTGAGTCCCACTCTGACT	0.522													27	47					0	0	1	0	0
VPS13B	157680	broad.mit.edu	37	8	100865828	100865828	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr8:100865828C>T	uc003yiv.2	+	56	10397	c.10286C>T	c.(10285-10287)CCC>CTC	p.P3429L	VPS13B_uc003yiw.2_Missense_Mutation_p.P3404L	NM_017890	NP_060360	Q7Z7G8	VP13B_HUMAN	vacuolar protein sorting 13B isoform 5	3429					protein transport					ovary(7)|skin(4)|lung(3)|central_nervous_system(2)|pancreas(2)|breast(1)|kidney(1)	20	Breast(36;3.73e-07)		OV - Ovarian serous cystadenocarcinoma(57;0.00636)			GGAGCTGGTCCCCTCCCTGGG	0.537													19	18					0	0	1	0	0
RGS22	26166	broad.mit.edu	37	8	101065073	101065073	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr8:101065073G>A	uc003yjb.1	-	10	1841	c.1646C>T	c.(1645-1647)CCA>CTA	p.P549L	RGS22_uc003yja.1_Missense_Mutation_p.P368L|RGS22_uc003yjc.1_Missense_Mutation_p.P537L|RGS22_uc011lgz.1_RNA|RGS22_uc010mbo.1_RNA	NM_015668	NP_056483	Q8NE09	RGS22_HUMAN	regulator of G-protein signaling 22	549					negative regulation of signal transduction	cytoplasm|plasma membrane	GTPase activator activity|signal transducer activity			ovary(3)|skin(2)|breast(1)|central_nervous_system(1)	7			Epithelial(11;6.71e-08)|all cancers(13;4.19e-06)|OV - Ovarian serous cystadenocarcinoma(57;0.000469)|STAD - Stomach adenocarcinoma(118;0.169)			GGGTCTTAATGGCAAGAGGGT	0.413													51	69					0	0	1	0	0
RGS22	26166	broad.mit.edu	37	8	101076098	101076098	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr8:101076098C>T	uc003yjb.1	-	8	1093	c.898G>A	c.(898-900)GAT>AAT	p.D300N	RGS22_uc003yja.1_Missense_Mutation_p.D119N|RGS22_uc003yjc.1_Missense_Mutation_p.D288N|RGS22_uc011lgz.1_RNA|RGS22_uc010mbo.1_RNA	NM_015668	NP_056483	Q8NE09	RGS22_HUMAN	regulator of G-protein signaling 22	300					negative regulation of signal transduction	cytoplasm|plasma membrane	GTPase activator activity|signal transducer activity			ovary(3)|skin(2)|breast(1)|central_nervous_system(1)	7			Epithelial(11;6.71e-08)|all cancers(13;4.19e-06)|OV - Ovarian serous cystadenocarcinoma(57;0.000469)|STAD - Stomach adenocarcinoma(118;0.169)			TCATCAACATCCTGTTTCTTT	0.313													14	21					0	0	1	0	0
ZFAT	57623	broad.mit.edu	37	8	135612789	135612789	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr8:135612789C>T	uc003yup.2	-	7	2540	c.2365G>A	c.(2365-2367)GTA>ATA	p.V789I	ZFAT_uc003yun.2_Missense_Mutation_p.V777I|ZFAT_uc003yuo.2_Missense_Mutation_p.V777I|ZFAT_uc010meh.2_Missense_Mutation_p.V777I|ZFAT_uc010mei.2_RNA|ZFAT_uc003yuq.2_Missense_Mutation_p.V777I|ZFAT_uc010mej.2_Missense_Mutation_p.V727I|ZFAT_uc003yur.2_Missense_Mutation_p.V777I|ZFATAS_uc003yus.1_RNA	NM_020863	NP_065914	Q9P243	ZFAT_HUMAN	zinc finger protein 406 isoform ZFAT-1	789	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|nucleus	DNA binding|zinc ion binding			central_nervous_system(1)	1	all_epithelial(106;8.26e-19)|Lung NSC(106;3.47e-07)|all_lung(105;1.39e-06)|Ovarian(258;0.0102)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0432)			TTCTGAATTACGTGGCGTTTA	0.428													49	79					0	0	1	0	0
BAI1	575	broad.mit.edu	37	8	143562694	143562694	+	Silent	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr8:143562694C>T	uc003ywm.2	+	9	2091	c.1908C>T	c.(1906-1908)TCC>TCT	p.S636S		NM_001702	NP_001693	O14514	BAI1_HUMAN	brain-specific angiogenesis inhibitor 1	636	Extracellular (Potential).				axonogenesis|cell adhesion|negative regulation of angiogenesis|negative regulation of cell proliferation|neuropeptide signaling pathway|peripheral nervous system development	cell-cell junction|integral to plasma membrane	G-protein coupled receptor activity|protein binding			lung(3)|ovary(2)|breast(1)|central_nervous_system(1)|pancreas(1)	8	all_cancers(97;2.84e-12)|all_epithelial(106;5.91e-09)|Lung NSC(106;0.000322)|all_lung(105;0.000616)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0315)|Acute lymphoblastic leukemia(118;0.155)					GCTGTGTTTCCATTGACTACA	0.607													39	50					0	0	1	0	0
CYP11B1	1584	broad.mit.edu	37	8	143960476	143960476	+	Missense_Mutation	SNP	G	A	A	rs145050906	byFrequency	TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr8:143960476G>A	uc003yxi.2	-	2	374	c.367C>T	c.(367-369)CGT>TGT	p.R123C	CYP11B1_uc003yxh.2_5'Flank|CYP11B1_uc003yxj.2_Missense_Mutation_p.R123C|CYP11B1_uc010mey.2_Missense_Mutation_p.R168C	NM_000497	NP_000488	P15538	C11B1_HUMAN	cytochrome P450, family 11, subfamily B,	123					aldosterone biosynthetic process|cellular response to hormone stimulus|cellular response to potassium ion|cortisol biosynthetic process|glucose homeostasis|immune response|regulation of blood pressure|response to stress|xenobiotic metabolic process	mitochondrial inner membrane	electron carrier activity|steroid 11-beta-monooxygenase activity			ovary(3)	3	all_cancers(97;4.74e-11)|all_epithelial(106;2.06e-08)|Lung NSC(106;0.000228)|all_lung(105;0.000633)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0254)|Acute lymphoblastic leukemia(118;0.155)				Mitotane(DB00648)	TTGTGCCCACGATGTTGTCTG	0.632									Familial_Hyperaldosteronism_type_I				17	31					0	0	1	0	0
CYP11B2	1585	broad.mit.edu	37	8	143996515	143996515	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr8:143996515C>T	uc003yxk.1	-	3	545	c.542G>A	c.(541-543)CGG>CAG	p.R181Q		NM_000498	NP_000489	P19099	C11B2_HUMAN	cytochrome P450, family 11, subfamily B,	181					aldosterone biosynthetic process|cellular response to hormone stimulus|cellular response to potassium ion|cortisol biosynthetic process|potassium ion homeostasis|regulation of blood volume by renal aldosterone|sodium ion homeostasis|xenobiotic metabolic process		corticosterone 18-monooxygenase activity|electron carrier activity|steroid 11-beta-monooxygenase activity				0	all_cancers(97;5.56e-11)|all_epithelial(106;2.49e-08)|Lung NSC(106;0.000228)|all_lung(105;0.000633)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0254)|Acute lymphoblastic leukemia(118;0.155)				Candesartan(DB00796)|Metyrapone(DB01011)	CAGGCTCCCCCGGGCGTTCTG	0.647									Familial_Hyperaldosteronism_type_I				5	19					0	0	1	0	0
ZNF34	80778	broad.mit.edu	37	8	145999766	145999766	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr8:145999766G>A	uc003zdy.3	-	6	670	c.568C>T	c.(568-570)CCT>TCT	p.P190S	ZNF34_uc010mgb.2_Missense_Mutation_p.P87S|ZNF34_uc003zdx.3_Missense_Mutation_p.P169S	NM_030580	NP_085057	Q8IZ26	ZNF34_HUMAN	zinc finger protein 34	190					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_cancers(97;3.54e-11)|all_epithelial(106;2.65e-10)|Lung NSC(106;4.08e-05)|all_lung(105;0.000125)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)	Acute lymphoblastic leukemia(644;0.221)	OV - Ovarian serous cystadenocarcinoma(54;2.75e-39)|Epithelial(56;5.18e-38)|all cancers(56;4.41e-33)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.11)	GBM - Glioblastoma multiforme(99;0.0179)		CTCTGATCAGGAACAGGTCTT	0.478													5	14					0	0	1	0	0
DMRT3	58524	broad.mit.edu	37	9	990557	990557	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr9:990557C>T	uc003zgw.1	+	2	1009	c.971C>T	c.(970-972)TCG>TTG	p.S324L		NM_021240	NP_067063	Q9NQL9	DMRT3_HUMAN	doublesex and mab-3 related transcription factor	324					cell differentiation|multicellular organismal development|sex differentiation	nucleus	DNA binding|metal ion binding|sequence-specific DNA binding transcription factor activity			ovary(2)|central_nervous_system(1)	3		all_lung(10;1.39e-08)|Lung NSC(10;1.42e-08)		Lung(218;0.0196)		TACCCCATCTCGTCTTCCAAA	0.557													27	10					0	0	1	0	0
IFNA14	3448	broad.mit.edu	37	9	21239926	21239926	+	Silent	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr9:21239926C>T	uc010mis.2	-	1	53	c.9G>A	c.(7-9)TTG>TTA	p.L3L	IFNA14_uc003zoo.1_RNA	NM_002172	NP_002163	P01570	IFN14_HUMAN	interferon, alpha 14 precursor	3					blood coagulation|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway	extracellular space	cytokine activity|cytokine receptor binding				0				Lung(24;2.12e-22)|LUSC - Lung squamous cell carcinoma(38;1.4e-13)		AAGCAAAGGGCAATGCCATTG	0.512													47	15					0	0	1	0	0
C9orf24	84688	broad.mit.edu	37	9	34397532	34397532	+	Silent	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr9:34397532G>A	uc003zuh.1	-	1	318	c.100C>T	c.(100-102)CTG>TTG	p.L34L		NM_032596	NP_115985	Q8NCR6	CI024_HUMAN	testes development-related NYD-SP22 isoform 1	34										ovary(1)	1			LUSC - Lung squamous cell carcinoma(29;0.0107)	GBM - Glioblastoma multiforme(74;0.123)		CAGGCACACAGGGGTGGGTCC	0.567													66	6					0	0	1	0	0
TMEM8B	51754	broad.mit.edu	37	9	35853233	35853233	+	Silent	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr9:35853233G>A	uc003zym.2	+	13	2077	c.1062G>A	c.(1060-1062)CTG>CTA	p.L354L	TMEM8B_uc003zyo.2_Silent_p.L354L	NM_001042589	NP_001036054	A6NDV4	TMM8B_HUMAN	transmembrane protein 8B isoform a	354	Helical; (Potential).				cell-matrix adhesion|regulation of growth|regulation of mitotic cell cycle	cell surface|endoplasmic reticulum|integral to membrane|mitochondrion|nucleus|plasma membrane	protein binding			ovary(1)	1						TCTTCGCCCTGGGGATCTTGG	0.607													56	13					0	0	1	0	0
Unknown	0	broad.mit.edu	37	9	66513883	66513883	+	RNA	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr9:66513883C>T	uc010mnh.1	-	6		c.865G>A								Homo sapiens cDNA FLJ20444 fis, clone KAT05128.																		GACGTCTGCTCTTGGAGCACA	0.498													14	78					0	0	1	0	0
PRUNE2	158471	broad.mit.edu	37	9	79320019	79320019	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr9:79320019G>A	uc010mpk.2	-	8	7295	c.7171C>T	c.(7171-7173)CCG>TCG	p.P2391S	PRUNE2_uc004akj.3_5'Flank|PRUNE2_uc010mpl.1_5'Flank	NM_015225	NP_056040	Q8WUY3	PRUN2_HUMAN	prune homolog 2	2391					apoptosis|G1 phase|induction of apoptosis	cytoplasm	metal ion binding|pyrophosphatase activity				0						GGTGTGTACGGTGCCAGCGAC	0.498													41	9					0	0	1	0	0
PTCH1	5727	broad.mit.edu	37	9	98242860	98242860	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr9:98242860G>A	uc004avk.3	-	6	945	c.757C>T	c.(757-759)CCT>TCT	p.P253S	PTCH1_uc010mro.2_Missense_Mutation_p.P102S|PTCH1_uc010mrp.2_Missense_Mutation_p.P102S|PTCH1_uc010mrq.2_Missense_Mutation_p.P102S|PTCH1_uc004avl.3_Missense_Mutation_p.P102S|PTCH1_uc010mrr.2_Missense_Mutation_p.P187S|PTCH1_uc004avm.3_Missense_Mutation_p.P252S|PTCH1_uc010mrs.1_5'UTR|PTCH1_uc010mrt.1_RNA|PTCH1_uc010mru.1_RNA	NM_000264	NP_000255	Q13635	PTC1_HUMAN	patched isoform L	253	Extracellular (Potential).				embryonic limb morphogenesis|negative regulation of multicellular organism growth|protein processing|regulation of smoothened signaling pathway|smoothened signaling pathway	integral to plasma membrane	hedgehog receptor activity			skin(242)|central_nervous_system(72)|bone(33)|upper_aerodigestive_tract(11)|lung(6)|large_intestine(4)|breast(4)|oesophagus(3)|ovary(3)|vulva(1)	379		Medulloblastoma(1;7.87e-06)|all_neural(1;0.000555)|Acute lymphoblastic leukemia(62;0.136)				CACCGCAAAGGAGGTTTACCT	0.453									Basal_Cell_Nevus_syndrome				35	3					0	0	1	0	0
PAPPA	5069	broad.mit.edu	37	9	118950229	118950229	+	Silent	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr9:118950229C>T	uc004bjn.2	+	2	1593	c.1212C>T	c.(1210-1212)TCC>TCT	p.S404S	PAPPA_uc011lxp.1_Silent_p.S197S|PAPPA_uc011lxq.1_Silent_p.S197S	NM_002581	NP_002572	Q13219	PAPP1_HUMAN	pregnancy-associated plasma protein A	404	Metalloprotease.				cell differentiation|female pregnancy	cytoplasm|extracellular region|membrane	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(4)|pancreas(1)	9						GCAACTCCTCCCTTCGCCGCC	0.617													34	13					0	0	1	0	0
PAPPA	5069	broad.mit.edu	37	9	119115183	119115183	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr9:119115183G>A	uc004bjn.2	+	16	4544	c.4163G>A	c.(4162-4164)CGG>CAG	p.R1388Q	PAPPA_uc011lxq.1_Missense_Mutation_p.R763Q	NM_002581	NP_002572	Q13219	PAPP1_HUMAN	pregnancy-associated plasma protein A	1388	Sushi 3.				cell differentiation|female pregnancy	cytoplasm|extracellular region|membrane	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(4)|pancreas(1)	9						GGATCCTCTCGGAAGTCAAAG	0.507													9	3					0	0	1	0	0
PPP6C	5537	broad.mit.edu	37	9	127933372	127933372	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr9:127933372G>A	uc004bpg.3	-	2	384	c.163C>T	c.(163-165)CAT>TAT	p.H55Y	PPP6C_uc010mwv.2_Missense_Mutation_p.H92Y|PPP6C_uc010mww.2_Missense_Mutation_p.H55Y|PPP6C_uc011lzr.1_5'UTR	NM_002721	NP_002712	O00743	PPP6_HUMAN	protein phosphatase 6, catalytic subunit isoform	55		Iron (By similarity).			G1/S transition of mitotic cell cycle|protein dephosphorylation	cytosol	metal ion binding|protein binding|protein serine/threonine phosphatase activity			ovary(1)|skin(1)	2						ACCTGTCCATGGATATCTCCA	0.378													83	15					0	0	1	0	0
ZBTB34	403341	broad.mit.edu	37	9	129642870	129642870	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr9:129642870C>T	uc004bqm.3	+	2	1277	c.1180C>T	c.(1180-1182)CAT>TAT	p.H394Y		NM_001099270	NP_001092740	Q8NCN2	ZBT34_HUMAN	zinc finger and BTB domain containing 34	394	C2H2-type 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						CATGCGACTCCATATGGGAAT	0.493													18	6					0	0	1	0	0
CEL	1056	broad.mit.edu	37	9	135946961	135946961	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr9:135946961C>T	uc010naa.1	+	11	2097	c.2081C>T	c.(2080-2082)CCC>CTC	p.P694L		NM_001807	NP_001798	P19835	CEL_HUMAN	carboxyl ester lipase precursor	691	13.|17 X 11 AA tandem repeats, glycodomain, O-linked (mucin type).				cholesterol catabolic process|fatty acid catabolic process|intestinal cholesterol absorption|intestinal lipid catabolic process|pancreatic juice secretion|protein esterification	cytosol|extracellular space	acylglycerol lipase activity|carboxylesterase activity|heparin binding|sterol esterase activity|triglyceride lipase activity			pancreas(1)	1				OV - Ovarian serous cystadenocarcinoma(145;1.03e-40)|Epithelial(140;3.58e-37)|GBM - Glioblastoma multiforme(294;0.00164)|READ - Rectum adenocarcinoma(205;0.196)		GGCGCCCCCCCCGTGCCGCCC	0.582													2	0					0	0	1	0	0
P2RY8	286530	broad.mit.edu	37	X	1585177	1585177	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chrX:1585177C>T	uc004cpz.2	-	2	523	c.275G>A	c.(274-276)GGG>GAG	p.G92E		NM_178129	NP_835230	Q86VZ1	P2RY8_HUMAN	G-protein coupled purinergic receptor P2Y8	92	Helical; Name=3; (Potential).					integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			lung(5)	5		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				AAGCAGCACCCCGAATACCCA	0.547			T	CRLF2	B-ALL|Downs associated ALL								24	36					0	0	1	0	0
TLR8	51311	broad.mit.edu	37	X	12938064	12938064	+	Missense_Mutation	SNP	T	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chrX:12938064T>A	uc004cve.2	+	2	973	c.905T>A	c.(904-906)ATT>AAT	p.I302N	TLR8_uc004cvd.2_Missense_Mutation_p.I320N	NM_138636	NP_619542	Q9NR97	TLR8_HUMAN	toll-like receptor 8 precursor	302	LRR 7.|Extracellular (Potential).				cellular response to mechanical stimulus|defense response to virus|I-kappaB kinase/NF-kappaB cascade|immunoglobulin mediated immune response|inflammatory response|innate immune response|positive regulation of innate immune response|positive regulation of interferon-alpha biosynthetic process|positive regulation of interferon-beta biosynthetic process|positive regulation of interferon-gamma biosynthetic process|positive regulation of interleukin-8 biosynthetic process	endosome membrane	DNA binding|double-stranded RNA binding|single-stranded RNA binding|transmembrane receptor activity			ovary(4)|lung(2)|large_intestine(1)	7						CTCAGGAAGATTAATGCTGCC	0.403													39	2					0	0	1	0	0
CA5B	11238	broad.mit.edu	37	X	15800757	15800757	+	Silent	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chrX:15800757C>T	uc004cxe.2	+	8	1041	c.924C>T	c.(922-924)CCC>CCT	p.P308P		NM_007220	NP_009151	Q9Y2D0	CAH5B_HUMAN	carbonic anhydrase VB, mitochondrial precursor	308					one-carbon metabolic process	mitochondrion	carbonate dehydratase activity|zinc ion binding				0	Hepatocellular(33;0.183)					AAGCGAAACCCAAGCCGGCCA	0.433													52	10					0	0	1	0	0
MAGEB6	158809	broad.mit.edu	37	X	26212941	26212941	+	Silent	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chrX:26212941G>A	uc004dbr.2	+	2	1127	c.978G>A	c.(976-978)GGG>GGA	p.G326G	MAGEB6_uc010ngc.1_Silent_p.G106G	NM_173523	NP_775794	Q8N7X4	MAGB6_HUMAN	melanoma antigen family B, 6	326	MAGE.									ovary(3)	3						CAATCTATGGGGATGCTCGGA	0.488													89	8					0	0	1	0	0
DMD	1756	broad.mit.edu	37	X	32613978	32613978	+	Silent	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chrX:32613978G>A	uc004dda.1	-	13	1742	c.1498C>T	c.(1498-1500)CTA>TTA	p.L500L	DMD_uc004dcz.2_Silent_p.L377L|DMD_uc004dcy.1_Silent_p.L496L|DMD_uc004ddb.1_Silent_p.L492L|DMD_uc010ngo.1_Intron|DMD_uc004ddf.2_Silent_p.L492L|DMD_uc010ngp.1_Intron|DMD_uc010ngq.1_Intron	NM_004006	NP_003997	P11532	DMD_HUMAN	dystrophin Dp427m isoform	500	Spectrin 2.		Missing (in BMD).		muscle filament sliding|peptide biosynthetic process	cell surface|costamere|cytoskeleton|cytosol|dystrophin-associated glycoprotein complex|sarcolemma	actin binding|dystroglycan binding|nitric-oxide synthase binding|protein binding|structural constituent of cytoskeleton|structural constituent of muscle|zinc ion binding			ovary(3)|pancreas(2)|large_intestine(1)	6		all_cancers(2;1.22e-16)|Acute lymphoblastic leukemia(2;4.65e-06)|all_hematologic(2;0.00108)|all_epithelial(3;0.00626)|all_neural(2;0.0189)|all_lung(315;0.182)|Glioma(3;0.203)				TCTTGTTCTAGATCTTCTTGA	0.358													20	3					0	0	1	0	0
FAM47A	158724	broad.mit.edu	37	X	34148905	34148905	+	Silent	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chrX:34148905C>T	uc004ddg.2	-	1	1524	c.1491G>A	c.(1489-1491)AAG>AAA	p.K497K		NM_203408	NP_981953	Q5JRC9	FA47A_HUMAN	hypothetical protein LOC158724	497			Missing.							ovary(4)|central_nervous_system(1)	5						TCCGACGAGTCTTGGGAGGCT	0.657													42	5					0	0	1	0	0
PAGE2	203569	broad.mit.edu	37	X	55116508	55116508	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chrX:55116508G>A	uc004duf.1	+	2	109	c.55G>A	c.(55-57)GAG>AAG	p.E19K		NM_207339	NP_997222	Q7Z2X7	GGEE2_HUMAN	P antigen family, member 2	19										ovary(2)	2						AAATGACCAAGAGTCTTCCCA	0.338													29	2					0	0	1	0	0
FAAH2	158584	broad.mit.edu	37	X	57358218	57358218	+	Silent	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chrX:57358218G>A	uc004dvc.2	+	4	749	c.600G>A	c.(598-600)CAG>CAA	p.Q200Q		NM_174912	NP_777572	Q6GMR7	FAAH2_HUMAN	fatty acid amide hydrolase 2	200						integral to membrane	carbon-nitrogen ligase activity, with glutamine as amido-N-donor|hydrolase activity			ovary(3)	3						ATGATTTACAGCATATTGTAG	0.353										HNSCC(52;0.14)			75	10					0	0	1	0	0
HEPH	9843	broad.mit.edu	37	X	65476102	65476102	+	Silent	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chrX:65476102C>T	uc011moz.1	+	17	2895	c.2835C>T	c.(2833-2835)ACC>ACT	p.T945T	HEPH_uc004dwn.2_Silent_p.T945T|HEPH_uc004dwo.2_Silent_p.T675T|HEPH_uc010nkr.2_Silent_p.T753T|HEPH_uc011mpa.1_Silent_p.T945T|HEPH_uc010nks.2_Silent_p.T234T	NM_138737	NP_620074	Q9BQS7	HEPH_HUMAN	hephaestin isoform a	942	Extracellular (Potential).|Plastocyanin-like 6.				cellular iron ion homeostasis|copper ion transport|transmembrane transport	integral to membrane|plasma membrane	copper ion binding|oxidoreductase activity			lung(5)|ovary(4)	9						ATGTGGCAACCCATGGGTCCC	0.423													56	3					0	0	1	0	0
NHSL2	340527	broad.mit.edu	37	X	71360061	71360061	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chrX:71360061C>T	uc011mqa.1	+	6	2663	c.2663C>T	c.(2662-2664)CCA>CTA	p.P888L	NHSL2_uc004eak.1_Missense_Mutation_p.P522L|NHSL2_uc010nli.2_Missense_Mutation_p.P657L	NM_001013627	NP_001013649	Q5HYW2	NHSL2_HUMAN	NHS-like 2	888											0	Renal(35;0.156)					GTCCACAAGCCACCATCTGTT	0.547													24	4					0	0	1	0	0
KIAA2022	340533	broad.mit.edu	37	X	73962509	73962509	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chrX:73962509C>T	uc004eby.2	-	3	2500	c.1883G>A	c.(1882-1884)CGA>CAA	p.R628Q		NM_001008537	NP_001008537	Q5QGS0	K2022_HUMAN	hypothetical protein LOC340533	628					base-excision repair, gap-filling|DNA replication proofreading|DNA replication, removal of RNA primer|nucleotide-excision repair, DNA gap filling|regulation of mitotic cell cycle|S phase of mitotic cell cycle	delta DNA polymerase complex	3'-5'-exodeoxyribonuclease activity|DNA-directed DNA polymerase activity			ovary(7)|large_intestine(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15						TTTAGATTTTCGTTTGCGAGC	0.418													15	0					0	0	1	0	0
MAGEE2	139599	broad.mit.edu	37	X	75003415	75003415	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chrX:75003415C>T	uc004ecj.1	-	1	1657	c.1472G>A	c.(1471-1473)CGA>CAA	p.R491Q		NM_138703	NP_619648	Q8TD90	MAGE2_HUMAN	melanoma antigen family E, 2	491	MAGE 2.									ovary(1)|skin(1)	2						GTTCTGTGGTCGCTTTCTGTA	0.478													22	2					0	0	1	0	0
POF1B	79983	broad.mit.edu	37	X	84634231	84634231	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chrX:84634231G>A	uc004eer.2	-	2	375	c.229C>T	c.(229-231)CCT>TCT	p.P77S	POF1B_uc004ees.2_Missense_Mutation_p.P77S	NM_024921	NP_079197	Q8WVV4	POF1B_HUMAN	premature ovarian failure, 1B	77							actin binding				0						GTTTTGAGAGGGGAGAGCACT	0.493													11	3					0	0	1	0	0
BTK	695	broad.mit.edu	37	X	100617189	100617189	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chrX:100617189G>A	uc004ehg.2	-	7	753	c.560C>T	c.(559-561)CCT>CTT	p.P187L	BTK_uc010nnn.2_Missense_Mutation_p.P187L|BTK_uc010nno.2_Missense_Mutation_p.P221L|BTK_uc004ehi.2_Missense_Mutation_p.P187L	NM_000061	NP_000052	Q06187	BTK_HUMAN	Bruton agammaglobulinemia tyrosine kinase	187					calcium-mediated signaling|induction of apoptosis by extracellular signals|mesoderm development	cytosol|membrane raft|nucleus|plasma membrane	ATP binding|identical protein binding|metal ion binding|non-membrane spanning protein tyrosine kinase activity|phosphatidylinositol-3,4,5-trisphosphate binding			lung(3)|central_nervous_system(2)|ovary(1)	6						TGGGGGAAGAGGCTTTTTTGT	0.488									Agammaglobulinemia_X-linked				37	4					0	0	1	0	0
DCX	1641	broad.mit.edu	37	X	110576300	110576300	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chrX:110576300C>T	uc004epd.2	-	4	1202	c.1030G>A	c.(1030-1032)GAT>AAT	p.D344N	DCX_uc011msv.1_Missense_Mutation_p.D344N|DCX_uc004epe.2_Missense_Mutation_p.D263N|DCX_uc004epf.2_Missense_Mutation_p.D263N|DCX_uc004epg.2_Missense_Mutation_p.D263N	NM_000555	NP_000546	O43602	DCX_HUMAN	doublecortin isoform a	344	Doublecortin 2.				axon guidance|central nervous system development|intracellular signal transduction	cytosol|microtubule associated complex	microtubule binding			central_nervous_system(2)|lung(1)|skin(1)	4						AGAGAAAAATCATCCTGAGCA	0.398													4	1					0	0	1	0	0
TRPC5	7224	broad.mit.edu	37	X	111095589	111095589	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chrX:111095589C>T	uc004epl.1	-	5	2233	c.1314G>A	c.(1312-1314)ATG>ATA	p.M438I	TRPC5_uc004epm.1_Missense_Mutation_p.M438I	NM_012471	NP_036603	Q9UL62	TRPC5_HUMAN	transient receptor potential cation channel,	438	Helical; (Potential).				axon guidance	calcium channel complex|integral to plasma membrane	protein binding|store-operated calcium channel activity			urinary_tract(1)	1						TTGCAAAATCCATCAGGTTCC	0.423													55	8					0	0	1	0	0
SLC25A43	203427	broad.mit.edu	37	X	118544178	118544178	+	Silent	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chrX:118544178C>T	uc004erd.2	+	3	887	c.543C>T	c.(541-543)TCC>TCT	p.S181S	SLC25A43_uc004erc.1_RNA|SLC25A43_uc011mtt.1_Intron	NM_145305	NP_660348	Q8WUT9	S2543_HUMAN	mitochondrial solute carrier protein	181	Helical; Name=4; (Potential).|Solcar 2.				transmembrane transport	integral to membrane|mitochondrial inner membrane	binding			skin(1)	1						CTGCTGGCTCCCTTCTTGTTT	0.517													69	5					0	0	1	0	0
SASH3	54440	broad.mit.edu	37	X	128926698	128926698	+	Silent	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chrX:128926698G>A	uc011mun.1	+	6	869	c.687G>A	c.(685-687)GTG>GTA	p.V229V	SASH3_uc004euu.2_Silent_p.V229V|SASH3_uc011muo.1_Silent_p.V196V	NM_018990	NP_061863	O75995	SASH3_HUMAN	SAM and SH3 domain containing 3	229	SH3.									ovary(2)|pancreas(1)	3						TCATCTATGTGGATGTGCTGC	0.587													22	1					0	0	1	0	0
AIFM1	9131	broad.mit.edu	37	X	129270128	129270128	+	Silent	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chrX:129270128G>A	uc004evg.2	-	12	1375	c.1197C>T	c.(1195-1197)GGC>GGT	p.G399G	AIFM1_uc011mur.1_Silent_p.G47G|AIFM1_uc011mus.1_3'UTR|AIFM1_uc004evh.2_Silent_p.G395G|AIFM1_uc004evi.2_Silent_p.G112G|AIFM1_uc004evk.2_RNA	NM_004208	NP_004199	O95831	AIFM1_HUMAN	programmed cell death 8 isoform 1	399	FAD-dependent oxidoreductase (By similarity).				activation of caspase activity|apoptosis in response to endoplasmic reticulum stress|cell redox homeostasis|DNA damage response, signal transduction resulting in induction of apoptosis|DNA fragmentation involved in apoptotic nuclear change	cytosol|mitochondrial inner membrane|mitochondrial intermembrane space|nucleus|perinuclear region of cytoplasm	DNA binding|electron carrier activity|flavin adenine dinucleotide binding|oxidoreductase activity|protein binding			ovary(4)|central_nervous_system(1)	5						TGGGCTCCAGGCCCACAGCTG	0.468													29	1					0	0	1	0	0
USP26	83844	broad.mit.edu	37	X	132162210	132162210	+	Silent	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chrX:132162210C>T	uc010nrm.1	-	6	509	c.39G>A	c.(37-39)GGG>GGA	p.G13G	USP26_uc011mvf.1_Silent_p.G13G	NM_031907	NP_114113	Q9BXU7	UBP26_HUMAN	ubiquitin-specific protease 26	13					protein deubiquitination|ubiquitin-dependent protein catabolic process	nucleus	cysteine-type peptidase activity|protein binding|ubiquitin thiolesterase activity			lung(3)|central_nervous_system(3)|kidney(1)|liver(1)	8	Acute lymphoblastic leukemia(192;0.000127)					TCTTGCAGTTCCCTATTTGGA	0.358													27	2					0	0	1	0	0
PRRG3	79057	broad.mit.edu	37	X	150869428	150869428	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chrX:150869428G>A	uc004few.1	+	4	1009	c.619G>A	c.(619-621)GAG>AAG	p.E207K		NM_024082	NP_076987	Q9BZD7	TMG3_HUMAN	proline rich Gla (G-carboxyglutamic acid) 3	207	Cytoplasmic (Potential).					extracellular region|integral to membrane	calcium ion binding			ovary(3)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					CAGCAGTGAGGAGGCCAGCGT	0.622													62	6					0	0	1	0	0
CNGA2	1260	broad.mit.edu	37	X	150909279	150909279	+	Silent	SNP	C	T	T			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chrX:150909279C>T	uc004fey.1	+	5	612	c.388C>T	c.(388-390)CTA>TTA	p.L130L		NM_005140	NP_005131	Q16280	CNGA2_HUMAN	cyclic nucleotide gated channel alpha 2	130	Cytoplasmic (Potential).				response to stimulus|sensory perception of smell	intracellular cyclic nucleotide activated cation channel complex	cAMP binding|intracellular cAMP activated cation channel activity			breast(3)	3	Acute lymphoblastic leukemia(192;6.56e-05)					GAAATTTGAACTATTTGTCTT	0.527													105	13					0	0	1	0	0
MAGEA12	4111	broad.mit.edu	37	X	151899942	151899942	+	Silent	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chrX:151899942G>A	uc010ntp.2	-	3	1213	c.859C>T	c.(859-861)CTG>TTG	p.L287L	MAGEA12_uc004fgb.2_Intron|MAGEA12_uc004fgc.2_Silent_p.L287L	NM_005367	NP_005358	P43365	MAGAC_HUMAN	melanoma antigen family A, 12	287	MAGE.									skin(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					AAATGGTGCAGGACTTTCACA	0.542													121	17					0	0	1	0	0
TGIF2LY	90655	broad.mit.edu	37	Y	3447341	3447341	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chrY:3447341G>A	uc004fqk.2	+	2	120	c.56G>A	c.(55-57)AGC>AAC	p.S19N		NM_139214	NP_631960	Q8IUE0	TF2LY_HUMAN	TGFB-induced factor homeobox 2-like, Y-linked	19						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						GAAAAAGACAGCCCGGCGAAG	0.512													20	4					0	0	1	0	0
DDIT4	54541	broad.mit.edu	37	10	74034674	74034675	+	Frame_Shift_Ins	INS	-	G	G	rs11539950		TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr10:74034674_74034675insG	uc001jsx.1	+	3	629_630	c.427_428insG	c.(427-429)CGGfs	p.R143fs		NM_019058	NP_061931	Q9NX09	DDIT4_HUMAN	RTP801	143					apoptosis					pancreas(1)	1						GTGCGGCCTGCGGGGGGCGCTG	0.693											OREG0020262	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	32	9	---	---	---	---					
LDHA	3939	broad.mit.edu	37	11	18418438	18418439	+	Frame_Shift_Ins	INS	-	AG	AG			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr11:18418438_18418439insAG	uc001mok.3	+	2	321_322	c.49_50insAG	c.(49-51)CAGfs	p.Q17fs	LDHA_uc010rdc.1_Frame_Shift_Ins_p.Q17fs|LDHA_uc009yhn.2_Frame_Shift_Ins_p.Q17fs|LDHA_uc009yho.2_5'UTR|LDHA_uc001mol.3_Frame_Shift_Ins_p.Q17fs|LDHA_uc010rdd.1_Frame_Shift_Ins_p.Q46fs	NM_005566	NP_005557	P00338	LDHA_HUMAN	lactate dehydrogenase A isoform 1	17					glycolysis|pyruvate metabolic process	cytosol	L-lactate dehydrogenase activity|protein binding			central_nervous_system(3)	3					NADH(DB00157)	AAAGGAAGAACAGACCCCCCAG	0.421													32	42	---	---	---	---					
MALAT1	378938	broad.mit.edu	37	11	65271780	65271780	+	RNA	DEL	T	-	-	rs36002528		TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr11:65271780delT	uc010roh.1	+	1		c.6548delT			uc001ody.2_5'Flank	NR_002819				Homo sapiens clone alpha1 mRNA sequence.												0						TTGTTGTAGCTTTTTTTTTTT	0.433													6	12	---	---	---	---					
GRM1	2911	broad.mit.edu	37	6	146755399	146755401	+	In_Frame_Del	DEL	CAG	-	-			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr6:146755399_146755401delCAG	uc010khw.1	+	9	3522_3524	c.3052_3054delCAG	c.(3052-3054)CAGdel	p.Q1022del	GRM1_uc010khv.1_3'UTR|GRM1_uc003qll.2_3'UTR|GRM1_uc011edz.1_3'UTR|GRM1_uc011eea.1_3'UTR	NM_000838	NP_000829	Q13255	GRM1_HUMAN	glutamate receptor, metabotropic 1 isoform alpha	1022	Gln/Pro-rich.|Cytoplasmic (Potential).				synaptic transmission	integral to plasma membrane	G-protein coupled receptor activity|glutamate receptor activity			lung(8)|ovary(4)|central_nervous_system(3)|large_intestine(2)|breast(2)	19		Ovarian(120;0.0387)		OV - Ovarian serous cystadenocarcinoma(155;5.35e-08)|GBM - Glioblastoma multiforme(68;0.00762)	Acamprosate(DB00659)|L-Glutamic Acid(DB00142)	CCCTCCTCTCCAGCAGCAGCAGC	0.660													8	268	---	---	---	---					
SFRP1	6422	broad.mit.edu	37	8	41166638	41166640	+	In_Frame_Del	DEL	GCT	-	-	rs3055861		TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr8:41166638_41166640delGCT	uc003xnt.2	-	1	341_343	c.39_41delAGC	c.(37-42)GCAGCC>GCC	p.13_14AA>A		NM_003012	NP_003003	Q8N474	SFRP1_HUMAN	secreted frizzled-related protein 1 precursor	13_14				Missing (in Ref. 1 and 3).	brain development|canonical Wnt receptor signaling pathway|cellular response to BMP stimulus|cellular response to estradiol stimulus|cellular response to fibroblast growth factor stimulus|cellular response to heparin|cellular response to hypoxia|cellular response to interleukin-1|cellular response to prostaglandin E stimulus|cellular response to starvation|cellular response to transforming growth factor beta stimulus|cellular response to tumor necrosis factor|cellular response to vitamin D|DNA fragmentation involved in apoptotic nuclear change|dorsal/ventral axis specification|hemopoietic progenitor cell differentiation|hemopoietic stem cell differentiation|menstrual cycle phase|negative regulation of androgen receptor signaling pathway|negative regulation of B cell differentiation|negative regulation of bone remodeling|negative regulation of canonical Wnt receptor signaling pathway involved in controlling type B pancreatic cell proliferation|negative regulation of cell growth|negative regulation of cell migration|negative regulation of cysteine-type endopeptidase activity|negative regulation of epithelial cell proliferation|negative regulation of epithelial to mesenchymal transition|negative regulation of fibroblast apoptosis|negative regulation of fibroblast proliferation|negative regulation of insulin secretion|negative regulation of ossification|negative regulation of osteoblast proliferation|negative regulation of peptidyl-tyrosine phosphorylation|negative regulation of transcription, DNA-dependent|negative regulation of Wnt receptor signaling pathway involved in dorsal/ventral axis specification|osteoblast differentiation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell growth|positive regulation of epithelial cell proliferation|positive regulation of fat cell differentiation|positive regulation of fibroblast apoptosis|positive regulation of focal adhesion assembly|positive regulation of non-canonical Wnt receptor signaling pathway|positive regulation of Rac GTPase activity|positive regulation of smoothened signaling pathway|positive regulation of stress fiber assembly|positive regulation of transcription, DNA-dependent|regulation of angiogenesis|regulation of cell cycle process|response to drug|response to organic cyclic compound|vasculature development	cell surface|cytosol|extracellular space|plasma membrane|proteinaceous extracellular matrix	cysteine-type endopeptidase activity|drug binding|frizzled binding|heparin binding|identical protein binding|PDZ domain binding|Wnt receptor activity|Wnt-protein binding			central_nervous_system(1)	1	Breast(1;9.19e-13)|Ovarian(28;0.00769)|Colorectal(14;0.0305)|Lung SC(25;0.211)	all_lung(54;0.0034)|Lung NSC(58;0.0134)|Hepatocellular(245;0.023)|Esophageal squamous(32;0.0559)	BRCA - Breast invasive adenocarcinoma(1;1.11e-10)|LUSC - Lung squamous cell carcinoma(45;0.00894)|COAD - Colon adenocarcinoma(11;0.0174)			CACGCCCAGGGCTGCCCCGCGGC	0.764													6	4	---	---	---	---					
PRKDC	5591	broad.mit.edu	37	8	48746799	48746799	+	Frame_Shift_Del	DEL	T	-	-			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr8:48746799delT	uc003xqi.2	-	60	8167	c.8110delA	c.(8110-8112)AGGfs	p.R2704fs	PRKDC_uc003xqj.2_Frame_Shift_Del_p.R2704fs|PRKDC_uc011ldh.1_Intron	NM_006904	NP_008835	P78527	PRKDC_HUMAN	protein kinase, DNA-activated, catalytic	2704	KIP-binding.				cellular response to insulin stimulus|double-strand break repair via nonhomologous end joining|peptidyl-serine phosphorylation|positive regulation of transcription from RNA polymerase II promoter	DNA-dependent protein kinase-DNA ligase 4 complex|transcription factor complex	ATP binding|DNA binding|DNA-dependent protein kinase activity|transcription factor binding			lung(12)|central_nervous_system(9)|ovary(6)|skin(4)|large_intestine(3)	34		all_cancers(86;0.0336)|all_epithelial(80;0.00111)|Lung NSC(129;0.00363)|all_lung(136;0.00391)				AGGCCCAGCCTTTTTTTCCCA	0.498								NHEJ					8	430	---	---	---	---					
AQP3	360	broad.mit.edu	37	9	33442435	33442435	+	Frame_Shift_Del	DEL	C	-	-			TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr9:33442435delC	uc003zsx.2	-	5	636	c.574delG	c.(574-576)GCCfs	p.A192fs	SUGT1P1_uc010mjq.1_Intron|AQP3_uc003zsv.1_3'UTR|AQP3_uc003zsw.2_Frame_Shift_Del_p.A36fs|AQP3_uc010mju.2_Intron	NM_004925	NP_004916	Q92482	AQP3_HUMAN	aquaporin 3	192	Helical; (Potential).				excretion|odontogenesis|positive regulation of immune system process|regulation of keratinocyte differentiation|response to calcium ion|response to retinoic acid|response to vitamin D	basolateral plasma membrane|cell-cell junction|cytoplasm	glycerol channel activity|water channel activity				0			LUSC - Lung squamous cell carcinoma(29;0.00788)	GBM - Glioblastoma multiforme(74;0.0899)		ACGGTGAAGGCCTCCAGGCCT	0.622													2	4	---	---	---	---					
PTCH1	5727	broad.mit.edu	37	9	98211549	98211549	+	Frame_Shift_Del	DEL	G	-	-	rs138240178	byFrequency	TCGA-BF-A3DM-01A-11D-A20D-08	TCGA-BF-A3DM-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	f148159d-c437-4583-a4cf-e124da3ea34f	3bbd9f16-3bf2-4aeb-a3fa-22475ab24326	g.chr9:98211549delG	uc004avk.3	-	22	3794	c.3606delC	c.(3604-3606)CCCfs	p.P1202fs	PTCH1_uc010mrn.2_5'UTR|PTCH1_uc010mro.2_Frame_Shift_Del_p.P1051fs|PTCH1_uc010mrp.2_Frame_Shift_Del_p.P1051fs|PTCH1_uc010mrq.2_Frame_Shift_Del_p.P1051fs|PTCH1_uc004avl.3_Frame_Shift_Del_p.P1051fs|PTCH1_uc010mrr.2_Frame_Shift_Del_p.P1136fs|PTCH1_uc004avm.3_Frame_Shift_Del_p.P1201fs	NM_000264	NP_000255	Q13635	PTC1_HUMAN	patched isoform L	1202	Cytoplasmic (Potential).				embryonic limb morphogenesis|negative regulation of multicellular organism growth|protein processing|regulation of smoothened signaling pathway|smoothened signaling pathway	integral to plasma membrane	hedgehog receptor activity	p.P1202L(1)		skin(242)|central_nervous_system(72)|bone(33)|upper_aerodigestive_tract(11)|lung(6)|large_intestine(4)|breast(4)|oesophagus(3)|ovary(3)|vulva(1)	379		Medulloblastoma(1;7.87e-06)|all_neural(1;0.000555)|Acute lymphoblastic leukemia(62;0.136)				GGACCACGCTGGGGGGTGGCT	0.597									Basal_Cell_Nevus_syndrome				2	4	---	---	---	---					
