Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
ATAD3C	219293	genome.wustl.edu	37	1	1396238	1396238	+	Silent	SNP	G	G	A	rs72896283	byCluster;by1000genomes	TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039211.2	+1	validated	p.A307	1.000	135	0%	221	37.6%	8	75%	-	-	-	HMMPfam_AAA,superfamily_SSF52540
GABRD	2563	genome.wustl.edu	37	1	1957151	1957151	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000815.4	+1	reviewed	p.P148	0.075	30	0%	48	12.5%	5	0%	-	-	-	HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD
RER1	11079	genome.wustl.edu	37	1	2328608	2328608	+	Silent	SNP	C	C	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007033.4	+1	reviewed	p.V45	0.217	233	0%	392	28.1%	105	26.6%	-	-	-	HMMPfam_Rer1
PRDM16	63976	genome.wustl.edu	37	1	3301801	3301801	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022114.3	+1	reviewed	p.A175V	0.965	133	0.8%	202	43.6%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMSmart_SM00317,superfamily_SET domain
CEP104	9731	genome.wustl.edu	37	1	3742423	3742423	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014704.3	-1	validated	p.I755V	0.993	103	0%	167	13.8%	14	28.5%	probably_damaging(0.998)	tolerated(0.42)	deleterious(0.488)	NULL
MASP2	10747	genome.wustl.edu	37	1	11107015	11107015	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006610.2	-1	reviewed	p.R56H	1.000	44	0%	71	38%	0	-	possibly_damaging(0.648)	tolerated(0.1)	deleterious(0.514)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
C1orf187	374946	genome.wustl.edu	37	1	11766675	11766675	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198545.3	+1	validated	p.P120	0.000	56	0%	65	47.7%	0	-	-	-	-	NULL
MFN2	9927	genome.wustl.edu	37	1	12069708	12069708	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127660.1	+1	reviewed	p.L710P	1.000	144	0%	269	41.6%	14	42.8%	probably_damaging(0.964)	deleterious(0)	deleterious(0.851)	HMMPfam_Fzo_mitofusin
MST1P9	11223	genome.wustl.edu	37	1	17086144	17086144	+	RNA	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_002729.2	-1	validated	NULL	0.999	67	0%	129	10.9%	3	0%	-	-	-	-
AKR7A2	8574	genome.wustl.edu	37	1	19635077	19635077	+	Silent	SNP	G	G	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003689.2	-1	validated	p.R120	1.000	133	0%	175	46.9%	40	55%	-	-	-	HMMPfam_Aldo_ket_red,superfamily_Aldo/ket_red
HMGCL	3155	genome.wustl.edu	37	1	24130960	24130960	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000191.2	-1	reviewed	p.A269V	1.000	73	0%	75	44%	61	36%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_HMGL-like,superfamily_Aldolase
PPP1R8	5511	genome.wustl.edu	37	1	28165359	28165359	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014110.3	+1	reviewed	p.N89K	1.000	101	0%	164	11%	33	12.1%	benign(0.185)	tolerated(0.14)	neutral(0.267)	HMMPfam_FHA,HMMSmart_SM00240,superfamily_SMAD/FHA domain
LOC100286999	100286999	genome.wustl.edu	37	1	32826960	32826960	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002342071.1	+1	model	p.A11V	1.000	8	0.000	19	0.526	11	63.6%	-	-	-	NULL
SYNC	81493	genome.wustl.edu	37	1	33161311	33161311	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030786.2	-1	reviewed	p.P130S	0.001	126	0%	190	40.5%	2	100%	benign(0.005)	tolerated(0.61)	neutral(0.004)	NULL
MTF1	4520	genome.wustl.edu	37	1	38305682	38305682	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005955.2	-1	reviewed	p.S186N	1.000	206	0.5%	75	49.3%	2	50%	probably_damaging(0.999)	tolerated(0.06)	deleterious(0.813)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
COL9A2	1298	genome.wustl.edu	37	1	40770484	40770484	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001852.3	-1	reviewed	p.Q381	0.038	55	0%	93	47.3%	68	44.1%	-	-	-	NULL
ELOVL1	64834	genome.wustl.edu	37	1	43831042	43831042	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022821.2	-1	validated	p.R18W	1.000	38	0%	104	46.2%	61	45.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
HECTD3	79654	genome.wustl.edu	37	1	45471548	45471548	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024602.5	-1	validated	p.A618V	1.000	81	0%	99	14.1%	18	5.5%	benign(0.382)	tolerated(0.51)	neutral(0.131)	HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain
POMGNT1	55624	genome.wustl.edu	37	1	46657884	46657884	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017739.3	-1	reviewed	p.W475C	1.000	78	0%	102	49%	54	40.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_GNT-I,superfamily_Nucleotide-diphospho-sugar transferases
DIO1	1733	genome.wustl.edu	37	1	54360128	54360128	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039715.1	+1	reviewed	p.L82P	1.000	75	0%	78	32.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_T4_deiodinase
SSBP3	23648	genome.wustl.edu	37	1	54707867	54707867	+	Silent	SNP	T	T	C	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000426150	-1	known	p.D150G	1.000	110	0%	168	48.2%	74	50%	-	-	-	HMMPfam_SSDP
DOCK7	85440	genome.wustl.edu	37	1	62940939	62940939	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000454575	-1	known	p.R1178C	0.329	302	0%	287	48.4%	22	40.9%	-	-	-	HMMPfam_Ded_cyto
IL12RB2	3595	genome.wustl.edu	37	1	67816654	67816654	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001559.2	+1	reviewed	p.H380	0.031	104	0%	46	23.9%	0	-	-	-	-	superfamily_Fibronectin type III
CDC7	8317	genome.wustl.edu	37	1	91985774	91985774	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134419.1	+1	reviewed	p.A423D	1.000	214	0%	133	16.5%	4	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
LPPR4	9890	genome.wustl.edu	37	1	99772445	99772445	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014839.4	+1	reviewed	p.R724H	1.000	57	0%	33	24.2%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
GPSM2	29899	genome.wustl.edu	37	1	109466787	109466787	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013296.4	+1	validated	p.D589V	1.000	114	0%	79	21.5%	14	14.2%	possibly_damaging(0.864)	tolerated(0.06)	deleterious(0.657)	NULL
HFE2	148738	genome.wustl.edu	37	1	145415616	145415616	+	Silent	SNP	G	G	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_213653.3	+1	reviewed	p.P145	0.902	32	0%	73	17.8%	1	0%	-	-	-	HMMPfam_RGM_N
CERS2	29956	genome.wustl.edu	37	1	150939576	150939576	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022075.3	-1	reviewed	p.H239Y	1.000	79	0%	152	13.2%	106	12.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TRAM_LAG1_CLN8,HMMSmart_SM00724
FLG	2312	genome.wustl.edu	37	1	152281866	152281866	+	Silent	SNP	C	C	T	rs187802033	by1000genomes	TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002016.1	-1	reviewed	p.S1832	0.000	369	0%	498	31.9%	0	-	-	-	-	NULL
GATAD2B	57459	genome.wustl.edu	37	1	153789021	153789021	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020699.2	-1	validated	p.A315V	1.000	150	0%	129	25.6%	7	28.5%	benign(0.001)	tolerated(0.15)	neutral(0.241)	NULL
CREB3L4	148327	genome.wustl.edu	37	1	153945473	153945473	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_130898.2	+1	provisional	p.V221A	1.000	111	0.9%	256	32%	141	29%	possibly_damaging(0.536)	deleterious(0)	deleterious(0.625)	HMMSmart_BRLZ,superfamily_Euk_transcr_DNA,HMMPfam_bZIP_1
PYGO2	90780	genome.wustl.edu	37	1	154931506	154931506	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138300.3	-1	validated	p.P324T	0.997	35	0%	63	12.7%	18	38.8%	probably_damaging(0.959)	deleterious(0.03)	deleterious(0.767)	superfamily_FYVE/PHD zinc finger
RUSC1	23623	genome.wustl.edu	37	1	155291621	155291621	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105203.1	+1	validated	p.H19	0.996	108	0%	295	26.4%	0	-	-	-	-	NULL
YY1AP1	55249	genome.wustl.edu	37	1	155631025	155631025	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000405763	-1	known	p.P495S	0.000	123	0%	134	29.1%	3	0%	benign(0.003)	-	-	NULL
MPZL1	9019	genome.wustl.edu	37	1	167691443	167691443	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003953.5	+1	validated	p.W19R	0.911	14	0%	42	21.4%	11	18.1%	possibly_damaging(0.528)	tolerated(0.22)	neutral(0.220)	NULL
TBX19	9095	genome.wustl.edu	37	1	168262463	168262463	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005149.2	+1	reviewed	p.C184S	1.000	117	0%	232	30.6%	3	66.6%	benign(0.386)	tolerated(0.22)	neutral(0.166)	HMMPfam_T-box,HMMSmart_TBOX,superfamily_P53_like_DNA_bnd
PAPPA2	60676	genome.wustl.edu	37	1	176668612	176668612	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020318.2	+1	validated	p.H1041	0.000	71	0%	50	32%	0	-	-	-	-	NULL
CACNA1E	777	genome.wustl.edu	37	1	181721358	181721358	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000721.2	+1	reviewed	p.R1271C	1.000	134	0%	152	31.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
CACNA1E	777	genome.wustl.edu	37	1	181767562	181767562	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000721.2	+1	reviewed	p.H2135	0.000	76	0%	150	21.3%	0	-	-	-	-	NULL
LAMC2	3918	genome.wustl.edu	37	1	183207485	183207485	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005562.2	+1	reviewed	p.R933K	1.000	191	0%	126	31.7%	14	14.2%	benign(0.019)	tolerated(0.88)	neutral(0.001)	NULL
PLA2G4A	5321	genome.wustl.edu	37	1	186839635	186839635	+	Silent	SNP	C	C	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024420.2	+1	reviewed	p.A34	0.998	105	0%	139	24.5%	3	0%	-	-	-	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
ASPM	259266	genome.wustl.edu	37	1	197072149	197072149	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018136.4	-1	reviewed	p.R2078*	0.835	49	0%	137	24.8%	1	0%	-	-	-	HMMSmart_SM00015,superfamily_P-loop containing nucleoside triphosphate hydrolases
ZBTB41	360023	genome.wustl.edu	37	1	197168802	197168802	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_194314.2	-1	validated	p.D268N	0.382	94	0%	344	33.4%	0	-	benign(0.072)	deleterious(0)	neutral(0.450)	NULL
LHX9	56956	genome.wustl.edu	37	1	197889244	197889244	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020204.2	+1	reviewed	p.E106G	1.000	72	0%	149	25.5%	2	0%	possibly_damaging(0.943)	deleterious(0)	deleterious(0.832)	HMMPfam_LIM,HMMSmart_SM00132,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
KIF21B	23046	genome.wustl.edu	37	1	200961495	200961495	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017596.2	-1	provisional	p.R767H	0.999	114	0%	160	28.1%	0	-	probably_damaging(0.994)	deleterious(0.03)	deleterious(0.817)	superfamily_WD40_like
SOX13	9580	genome.wustl.edu	37	1	204091488	204091488	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005686.2	+1	reviewed	p.T329A	0.538	30	0%	39	28.2%	15	26.6%	benign(0.059)	tolerated(0.45)	neutral(0.016)	NULL
NUCKS1	64710	genome.wustl.edu	37	1	205688760	205688760	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022731.3	-1	validated	p.D143N	1.000	142	0%	166	25.3%	229	28.3%	benign(0.079)	deleterious(0)	neutral(0.450)	NULL
YOD1	55432	genome.wustl.edu	37	1	207222861	207222861	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018566.3	-1	validated	p.R184H	0.994	121	0%	369	36%	4	75%	benign(0.014)	tolerated(0.39)	neutral(0.017)	HMMPfam_OTU,superfamily_Cysteine proteinases
SYT14	255928	genome.wustl.edu	37	1	210329227	210329227	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153262.2	+1	validated	p.F442	1.000	140	0.7%	143	61.5%	0	-	-	-	-	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
PTPN14	5784	genome.wustl.edu	37	1	214549623	214549623	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005401.4	-1	reviewed	p.R949Q	0.994	311	0%	645	27.9%	4	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Y_phosphatase,HMMSmart_PTPc,superfamily_SSF52799
GJC2	57165	genome.wustl.edu	37	1	228346059	228346059	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020435.2	+1	reviewed	p.G200	0.987	17	0%	38	31.6%	1	100%	-	-	-	NULL
OBSCN	84033	genome.wustl.edu	37	1	228503782	228503782	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098623.1	+1	reviewed	p.A4416V	1.000	64	0%	151	33.8%	3	0%	benign(0.171)	tolerated(0.15)	neutral(0.257)	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
KIAA1804	84451	genome.wustl.edu	37	1	233515301	233515301	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032435.2	+1	validated	p.A850V	0.000	64	0%	57	24.6%	12	41.6%	benign(0.005)	tolerated(0.1)	neutral(0.286)	NULL
RBM34	23029	genome.wustl.edu	37	1	235324528	235324528	+	Nonsense_Mutation	SNP	C	C	A	rs139917557	by1000genomes	TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000474086	-1	known	p.G8*	0.115	237	0%	603	28.9%	16	37.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CHRM3	1131	genome.wustl.edu	37	1	240071128	240071128	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000740.2	+1	reviewed	p.T126M	1.000	91	0%	73	34.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_SSF81321
WDR64	128025	genome.wustl.edu	37	1	241846910	241846910	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000366552	+1	known	p.R239I	0.561	43	0%	50	20%	0	-	probably_damaging(0.983)	tolerated(0.71)	neutral(0.430)	superfamily_WD40 repeat-like
CNST	163882	genome.wustl.edu	37	1	246755209	246755209	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152609.2	+1	validated	p.R115S	0.998	36	0%	38	34.2%	0	-	probably_damaging(0.982)	tolerated(0.21)	deleterious(0.470)	NULL
ZNF496	84838	genome.wustl.edu	37	1	247492722	247492722	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032752.1	-1	provisional	p.A53	0.024	20	0%	96	31.2%	6	33.3%	-	-	-	HMMPfam_SCAN,HMMSmart_SCAN
ALLC	55821	genome.wustl.edu	37	2	3730547	3730547	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018436.3	+1	validated	p.W132R	0.986	130	0%	186	41.9%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	superfamily_Gal_bind_like,HMMPfam_Allantoicase
MYCN	4613	genome.wustl.edu	37	2	16082317	16082317	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005378.4	+1	reviewed	p.P44L	1.000	25	0%	49	55.1%	28	50%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_Myc_N
KCNS3	3790	genome.wustl.edu	37	2	18112561	18112561	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002252.3	+1	reviewed	p.V96I	1.000	83	0%	74	32.4%	10	30%	possibly_damaging(0.638)	tolerated(0.09)	deleterious(0.520)	HMMSmart_BTB,HMMPfam_K_tetra,superfamily_BTB/POZ_fold
DNMT3A	1788	genome.wustl.edu	37	2	25464537	25464537	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022552.3	-1	reviewed	p.R659H	1.000	63	0%	64	35.9%	6	16.6%	possibly_damaging(0.44)	tolerated(0.07)	neutral(0.463)	superfamily_S-adenosyl-L-methionine-dependent methyltransferases
EMILIN1	11117	genome.wustl.edu	37	2	27305655	27305655	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007046.3	+1	reviewed	p.R406C	0.999	5	0.000	10	0.600	11	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ZNF512	84450	genome.wustl.edu	37	2	27826132	27826132	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032434.2	+1	validated	p.S298	0.956	126	0%	117	24.8%	9	22.2%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2
GPN1	11321	genome.wustl.edu	37	2	27852730	27852730	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007266.3	+1	reviewed	p.L53R	1.000	130	0%	140	31.4%	10	30%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMSmart_AAA,HMMPfam_ATP_bind_1,superfamily_SSF52540
XDH	7498	genome.wustl.edu	37	2	31620557	31620557	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000379.3	-1	reviewed	p.Q158*	0.989	135	0%	45	31.1%	0	-	-	-	-	HMMPfam_Fer2_2,superfamily_2Fe-2S_bind
QPCT	25797	genome.wustl.edu	37	2	37571902	37571902	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012413.3	+1	reviewed	p.V10M	0.000	20	0%	16	56.2%	8	37.5%	unknown(0)	deleterious(0.02)	-	NULL
ARHGEF33	100271715	genome.wustl.edu	37	2	39187231	39187231	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145451.2	+1	validated	p.L595	0.865	10	0%	16	37.5%	0	-	-	-	-	NULL
TTC7A	57217	genome.wustl.edu	37	2	47168708	47168708	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020458.2	+1	validated	p.Y10fs	1.000	-	-	-	-	-	-	-	-	-	NULL
LHCGR	3973	genome.wustl.edu	37	2	48915500	48915500	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000233.3	-1	reviewed	p.R479L	0.991	109	0%	72	34.7%	0	-	possibly_damaging(0.837)	deleterious(0.02)	deleterious(0.703)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
PEX13	5194	genome.wustl.edu	37	2	61272929	61272929	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002618.3	+1	reviewed	p.V286I	0.881	235	0%	178	28.1%	36	30.5%	benign(0.021)	tolerated(0.22)	neutral(0.043)	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain
VPS54	51542	genome.wustl.edu	37	2	64141386	64141386	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016516.2	-1	reviewed	p.Y755C	1.000	89	0%	93	49.5%	19	42.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Vps54
TACR1	6869	genome.wustl.edu	37	2	75425765	75425765	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001058.3	-1	reviewed	p.Y99C	1.000	171	0%	258	43.4%	0	-	probably_damaging(1)	tolerated(0.1)	deleterious(0.786)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ANKRD39	51239	genome.wustl.edu	37	2	97519315	97519315	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016466.5	-1	validated	p.Y77	0.001	32	0%	51	52.9%	27	25.9%	-	-	-	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
TMEM131	23505	genome.wustl.edu	37	2	98413349	98413349	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015348.1	-1	validated	p.R991C	1.000	156	0%	188	43.1%	19	15.7%	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	NULL
C2orf55	343990	genome.wustl.edu	37	2	99448880	99448880	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207362.2	-1	validated	p.D157	0.409	57	0%	66	42.4%	6	33.3%	-	-	-	NULL
TGFBRAP1	9392	genome.wustl.edu	37	2	105890145	105890145	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142621.1	-1	validated	p.V556	0.998	276	0%	465	13.8%	6	0%	benign(0.001)	deleterious(0.02)	neutral(0.383)	NULL
INHBB	3625	genome.wustl.edu	37	2	121106799	121106799	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002193.2	+1	reviewed	p.G192fs	1.000	-	-	-	-	-	-	-	-	-	HMMPfam_TGFb_propeptide
GLI2	2736	genome.wustl.edu	37	2	121747653	121747653	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005270.4	+1	reviewed	p.A1388V	0.068	10	0%	15	40%	0	-	benign(0.15)	tolerated(0.18)	neutral(0.069)	NULL
PROC	5624	genome.wustl.edu	37	2	128180917	128180917	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000402125	+1	known	p.A18V	0.000	17	0%	14	57.1%	0	-	-	-	-	HMMSmart_SM00020,superfamily_EGF/Laminin
NEB	4703	genome.wustl.edu	37	2	152512338	152512338	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004543.4	-1	reviewed	p.M2232T	1.000	164	0%	49	14.3%	0	-	probably_damaging(0.957)	tolerated(0.08)	deleterious(0.701)	HMMPfam_Nebulin,HMMSmart_SM00227
KCNJ3	3760	genome.wustl.edu	37	2	155555713	155555713	+	Silent	SNP	C	C	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002239.2	+1	reviewed	p.A142	1.000	105	0%	140	44.3%	0	-	-	-	-	HMMPfam_IRK,superfamily_SSF81324
TANC1	85461	genome.wustl.edu	37	2	160087103	160087103	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033394.2	+1	validated	p.P1722	0.025	116	0%	61	49.2%	12	41.6%	-	-	-	NULL
SSB	6741	genome.wustl.edu	37	2	170663404	170663404	+	Splice_Site	SNP	T	T	C	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003142.3	+1	provisional	e4+2	1.000	113	0%	213	10.3%	2	50%	-	-	-	-
TTN	7273	genome.wustl.edu	37	2	179452776	179452776	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.N18550D	1.000	126	0%	36	36.1%	0	-	benign(0.014)	-	-	HMMPfam_fn3,HMMSmart_SM00060
CCDC141	285025	genome.wustl.edu	37	2	179730570	179730570	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173648.2	-1	provisional	p.R308H	0.000	127	0%	53	45.3%	0	-	possibly_damaging(0.736)	tolerated(0.11)	deleterious(0.540)	NULL
FN1	2335	genome.wustl.edu	37	2	216239990	216239990	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_212482.1	-1	reviewed	p.P2035L	1.000	75	0%	62	43.5%	31	0%	benign(0.042)	tolerated(0.74)	neutral(0.004)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
TNS1	7145	genome.wustl.edu	37	2	218712887	218712889	+	In_Frame_Del	DEL	GCT	GCT	-	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	GCT	GCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022648.4	-1	reviewed	p.Q659in_frame_del	1.000:1.000:0.994	-	-	-	-	-	-	-	-	-	NULL
WDFY1	57590	genome.wustl.edu	37	2	224746657	224746657	+	Splice_Site	SNP	A	A	G	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020830.3	-1	reviewed	e10+2	1.000	108	0%	104	43.3%	0	-	-	-	-	-
NGEF	25791	genome.wustl.edu	37	2	233748046	233748046	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019850.2	-1	validated	p.T578A	1.000	46	0%	52	28.8%	21	42.8%	benign(0.001)	tolerated(0.4)	neutral(0.016)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
NGEF	25791	genome.wustl.edu	37	2	233785046	233785046	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019850.2	-1	validated	p.R259Q	0.980	80	0%	83	47%	3	66.6%	benign(0)	tolerated(0.24)	neutral(0.037)	NULL
NGEF	25791	genome.wustl.edu	37	2	233785047	233785047	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019850.2	-1	validated	p.R259W	0.982	78	0%	84	40.5%	3	33.3%	possibly_damaging(0.76)	deleterious(0)	deleterious(0.726)	NULL
NEU2	4759	genome.wustl.edu	37	2	233897400	233897400	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005383.2	+1	reviewed	p.L7	0.817	63	0%	109	38.5%	0	-	-	-	-	superfamily_Sialidase
UBE2F	140739	genome.wustl.edu	37	2	238949966	238949966	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080678.1	+1	provisional	p.R182H	0.938	143	0%	97	44.3%	65	40%	benign(0.003)	deleterious(0.04)	neutral(0.349)	HMMSmart_SM00212,superfamily_UBC-like
KIF1A	547	genome.wustl.edu	37	2	241662056	241662056	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004321.4	-1	reviewed	p.H1393Q	0.996	14	0%	28	50%	2	50%	possibly_damaging(0.662)	tolerated(0.14)	deleterious(0.484)	NULL
ANO7	50636	genome.wustl.edu	37	2	242129563	242129563	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001891.3	+1	validated	p.G83R	0.766	19	0%	27	51.9%	0	-	possibly_damaging(0.923)	deleterious(0.01)	deleterious(0.778)	NULL
ITPR1	3708	genome.wustl.edu	37	3	4854854	4854854	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099952.2	+1	reviewed	p.F2451	0.999	169	0%	132	35.6%	5	20%	-	-	-	HMMPfam_Ion_trans
GRM7	2917	genome.wustl.edu	37	3	7620961	7620961	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181874.2	+1	reviewed	p.I790F	1.000	88	0%	61	49.2%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_7tm_3,PatternScan_G_PROTEIN_RECEP_F3_3
OXTR	5021	genome.wustl.edu	37	3	8808979	8808979	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000916.3	-1	reviewed	p.V299I	1.000	15	0%	24	75%	0	-	possibly_damaging(0.889)	deleterious(0.01)	deleterious(0.755)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
MTMR14	64419	genome.wustl.edu	37	3	9704038	9704038	+	Silent	SNP	A	A	G	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001077525.2	+1	reviewed	p.P132	0.047	146	0%	77	39%	13	61.5%	-	-	-	superfamily_(Phosphotyrosine protein) phosphatases II
BRPF1	7862	genome.wustl.edu	37	3	9781540	9781540	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001003694.1	+1	reviewed	p.A486V	1.000	113	0%	145	50.3%	3	100%	possibly_damaging(0.836)	tolerated(0.29)	neutral(0.349)	NULL
IL17RC	84818	genome.wustl.edu	37	3	9962252	9962252	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153461.2	+1	reviewed	p.Y252	1.000	107	0%	162	46.9%	29	41.3%	-	-	-	NULL
FANCD2	2177	genome.wustl.edu	37	3	10084272	10084272	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033084.3	+1	reviewed	p.S271	0.013	225	0%	220	41.8%	1	100%	-	-	-	NULL
SLC6A11	6538	genome.wustl.edu	37	3	10970929	10970929	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014229.1	+1	provisional	p.M425I	1.000	304	0%	304	41.8%	0	-	benign(0.038)	tolerated(0.35)	neutral(0.022)	HMMPfam_SNF
DLEC1	9940	genome.wustl.edu	37	3	38139083	38139084	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	AG	AG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007337.2	+1	reviewed	p.D841fs	0.000:0.000	-	-	-	-	-	-	-	-	-	NULL
SCN5A	6331	genome.wustl.edu	37	3	38595990	38595990	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099404.1	-1	reviewed	p.D1531	0.842	143	0.7%	61	32.8%	0	-	-	-	-	superfamily_Voltage-gated potassium channels
MYRIP	25924	genome.wustl.edu	37	3	40085637	40085637	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000396217	+1	known	p.R26H	0.005	116	0%	29	37.9%	3	66.6%	unknown(0)	deleterious(0)	-	NULL
CDCP1	64866	genome.wustl.edu	37	3	45135066	45135066	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022842.3	-1	reviewed	p.H444Y	0.998	66	0%	36	22.2%	9	22.2%	probably_damaging(0.962)	deleterious(0.03)	deleterious(0.770)	NULL
SCAP	22937	genome.wustl.edu	37	3	47461187	47461187	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012235.2	-1	reviewed	p.T524I	1.000	36	0%	64	42.2%	24	54.1%	probably_damaging(1)	tolerated(0.34)	deleterious(0.523)	NULL
DHX30	22907	genome.wustl.edu	37	3	47868968	47868968	+	Splice_Site	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138615.2	+1	reviewed	e3+1	1.000	85	0%	172	42.4%	1	100%	-	-	-	-
IMPDH2	3615	genome.wustl.edu	37	3	49062644	49062644	+	Silent	SNP	C	C	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000429182	-1	known	p.A311S	1.000	89	0%	163	42.9%	163	45.3%	-	-	-	HMMPfam_IMPDH,superfamily_Inosine monophosphate dehydrogenase (IMPDH)
BSN	8927	genome.wustl.edu	37	3	49694978	49694978	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003458.3	+1	reviewed	p.S2663	0.518	20	0%	36	16.7%	0	-	-	-	-	NULL
NAT6	24142	genome.wustl.edu	37	3	50334433	50334433	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012191.2	-1	provisional	p.R176	0.686	11	0%	15	46.7%	20	15%	-	-	-	HMMPfam_Acetyltransf_1,superfamily_Acyl_CoA_acyltransferase
NEK4	6787	genome.wustl.edu	37	3	52802572	52802572	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003157.3	-1	validated	p.R48*	0.995	81	0%	162	53.1%	3	0%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
CACNA2D3	55799	genome.wustl.edu	37	3	54596956	54596956	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018398.2	+1	reviewed	p.P225L	1.000	206	0%	179	41.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_VWA_N
FAM116A	201627	genome.wustl.edu	37	3	57616182	57616182	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152678.2	-1	validated	p.L529*	1.000	141	0%	291	43.3%	1	0%	-	-	-	HMMPfam_DUF1630
ACOX2	8309	genome.wustl.edu	37	3	58520167	58520167	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003500.3	-1	reviewed	p.M81I	0.000	105	0%	90	42.2%	1	0%	benign(0)	tolerated(0.48)	neutral(0.011)	superfamily_AcylCoA_dehyd_NM
CADPS	8618	genome.wustl.edu	37	3	62631508	62631508	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003716.3	-1	reviewed	p.M405T	1.000	178	0%	98	39.8%	0	-	benign(0.055)	tolerated(0.19)	neutral(0.053)	HMMPfam_C2
ABI3BP	25890	genome.wustl.edu	37	3	100489771	100489771	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000495591	-1	known	p.S864N	0.999	327	0%	204	41.7%	0	-	-	-	-	NULL
UPK1B	7348	genome.wustl.edu	37	3	118905611	118905611	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006952.3	+1	reviewed	p.V8A	0.727	239	0%	161	45.3%	0	-	benign(0.385)	deleterious(0.01)	deleterious(0.528)	NULL
ARHGAP31	57514	genome.wustl.edu	37	3	119134011	119134011	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020754.2	+1	reviewed	p.T1079A	0.000	121	0%	61	13.1%	2	0%	benign(0)	tolerated(0.3)	neutral(0.029)	NULL
EAF2	55840	genome.wustl.edu	37	3	121591463	121591463	+	Silent	SNP	A	A	G	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018456.4	+1	validated	p.S188	1.000	69	0%	72	40.3%	11	63.6%	-	-	-	NULL
KALRN	8997	genome.wustl.edu	37	3	124141778	124141778	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001024660.3	+1	reviewed	p.L886I	1.000	83	0%	31	22.6%	0	-	probably_damaging(1)	tolerated(0.13)	deleterious(0.752)	superfamily_Spectrin repeat
HEG1	57493	genome.wustl.edu	37	3	124748127	124748127	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020733.1	-1	validated	p.G174	0.004	138	0%	86	45.3%	2	0%	-	-	-	NULL
PLXND1	23129	genome.wustl.edu	37	3	129302994	129302994	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015103.2	-1	validated	p.R704	0.001	94	0%	169	47.3%	6	16.6%	-	-	-	HMMPfam_PSI,HMMSmart_SM00423
ATP2C1	27032	genome.wustl.edu	37	3	130718381	130718381	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001486.1	+1	reviewed	p.I836N	1.000	149	0%	108	24.1%	169	23.6%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Cation_ATPase_C,superfamily_Calcium ATPase transmembrane domain M
ZBTB38	253461	genome.wustl.edu	37	3	141164073	141164073	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080412.2	+1	validated	p.P948L	0.916	32	0%	41	41.5%	5	40%	probably_damaging(1)	tolerated(0.29)	deleterious(0.529)	NULL
MED12L	116931	genome.wustl.edu	37	3	151127089	151127089	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_053002.4	+1	reviewed	p.L1925P	1.000	62	1.6%	51	41.2%	0	-	probably_damaging(0.996)	tolerated(0.25)	deleterious(0.498)	NULL
SMC4	10051	genome.wustl.edu	37	3	160120494	160120494	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001002800.1	+1	validated	p.S117C	1.000	92	0%	238	45%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SMC_N,superfamily_P-loop containing nucleoside triphosphate hydrolases
PIK3CA	5290	genome.wustl.edu	37	3	178916891	178916891	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006218.2	+1	reviewed	p.R93Q	1.000	60	0%	116	46.6%	0	-	probably_damaging(0.999)	tolerated(0.24)	deleterious(0.528)	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B
PIK3CA	5290	genome.wustl.edu	37	3	178952007	178952007	+	Missense_Mutation	SNP	A	A	G	rs121913288		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006218.2	+1	reviewed	p.Y1021C	1.000	120	0%	68	45.6%	13	53.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_PI3Kc,superfamily_Kinase_like
ENSG00000205835	0	genome.wustl.edu	37	3	190575610	190575610	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000442080	-1	known	p.N116H	1.000	211	0%	353	40.2%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
RNF168	165918	genome.wustl.edu	37	3	196198890	196198890	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152617.2	-1	provisional	p.K506E	0.016	365	0%	431	19.3%	4	25%	benign(0)	tolerated(1)	-	NULL
PCGF3	10336	genome.wustl.edu	37	4	727520	727520	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006315.4	+1	reviewed	p.C17	1.000	59	0%	108	50%	18	33.3%	-	-	-	HMMSmart_SM00184,HMMPfam_zf-C3HC4,superfamily_RING/U-box
SLC26A1	10861	genome.wustl.edu	37	4	983042	983042	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022042.2	-1	reviewed	p.T562M	0.174	15	0%	26	42.3%	0	-	probably_damaging(0.998)	deleterious(0.05)	deleterious(0.820)	HMMPfam_STAS,superfamily_STAS
SPON2	10417	genome.wustl.edu	37	4	1165648	1165648	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000290902	-1	known	p.S71L	0.237	4	0.000	13	0.462	33	6%	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	HMMPfam_Spond_N
HGFAC	3083	genome.wustl.edu	37	4	3447966	3447966	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001528.2	+1	reviewed	p.G434W	0.994	13	0%	22	45.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
ABLIM2	84448	genome.wustl.edu	37	4	7968738	7968738	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130083.1	-1	validated	p.K639	1.000	49	0%	123	48%	0	-	-	-	-	HMMPfam_VHP,HMMSmart_SM00153,superfamily_VHP Villin headpiece domain
GABRA4	2557	genome.wustl.edu	37	4	46979585	46979585	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000809.2	-1	reviewed	p.G112	0.999	180	0%	137	10.2%	0	-	-	-	-	HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD
GABRB1	2560	genome.wustl.edu	37	4	47163485	47163485	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000812.3	+1	reviewed	p.R154*	1.000	147	0%	158	41.8%	0	-	-	-	-	HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD
KIAA1211	57482	genome.wustl.edu	37	4	57176851	57176851	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020722.1	+1	validated	p.S102Y	0.965	225	0%	429	14.2%	0	-	unknown(0)	tolerated(0.11)	-	NULL
NOA1	84273	genome.wustl.edu	37	4	57842938	57842938	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032313.2	-1	provisional	p.C272R	1.000	11	0%	20	70%	23	52.1%	probably_damaging(0.997)	deleterious(0.02)	deleterious(0.849)	superfamily_SSF52540
ANKRD17	26057	genome.wustl.edu	37	4	73951008	73951008	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032217.3	-1	reviewed	p.S2373P	1.000	82	0%	77	20.8%	26	11.5%	possibly_damaging(0.951)	deleterious(0.01)	deleterious(0.800)	NULL
CXCL5	6374	genome.wustl.edu	37	4	74863804	74863804	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002994.3	-1	reviewed	p.L84P	0.839	56	0%	253	41.9%	4	0%	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	HMMPfam_IL8,HMMSmart_SM00199,superfamily_Interleukin 8-like chemokines,PatternScan_SMALL_CYTOKINES_CXC
NAAA	27163	genome.wustl.edu	37	4	76861237	76861237	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014435.3	-1	reviewed	p.T96	0.000	50	0%	68	50%	37	40.5%	-	-	-	NULL
KLHL8	57563	genome.wustl.edu	37	4	88104461	88104461	+	Silent	SNP	A	A	G	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020803.3	-1	validated	p.C282	1.000	280	0%	215	38.6%	3	100%	-	-	-	superfamily_Galactose oxidase central domain
HERC3	8916	genome.wustl.edu	37	4	89628072	89628072	+	Silent	SNP	C	C	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014606.1	+1	provisional	p.T1038	0.041	99	0%	79	51.9%	4	75%	-	-	-	HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain
GPRIN3	285513	genome.wustl.edu	37	4	90170552	90170552	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198281.2	-1	validated	p.P237H	0.000	42	0%	51	19.6%	0	-	benign(0.071)	deleterious(0)	neutral(0.450)	NULL
MTTP	4547	genome.wustl.edu	37	4	100532591	100532591	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000253.2	+1	reviewed	p.A657V	0.009	205	0%	102	42.2%	0	-	benign(0.421)	tolerated(0.17)	neutral(0.196)	NULL
DAPP1	27071	genome.wustl.edu	37	4	100774497	100774497	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014395.2	+1	validated	p.A161S	0.993	108	0%	71	54.9%	0	-	benign(0.126)	tolerated(0.17)	neutral(0.069)	superfamily_PH domain-like,superfamily_SH2 domain
SEC24D	9871	genome.wustl.edu	37	4	119654006	119654006	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014822.2	-1	reviewed	p.C853Y	1.000	178	0%	52	32.7%	43	32.5%	possibly_damaging(0.94)	deleterious(0.01)	deleterious(0.790)	HMMPfam_Sec23_helical,superfamily_Helical domain of Sec23/24
FAT4	79633	genome.wustl.edu	37	4	126373294	126373294	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024582.4	+1	validated	p.T3708I	1.000	148	0%	61	45.9%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
PCDH10	57575	genome.wustl.edu	37	4	134073825	134073825	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032961.1	+1	reviewed	p.R844W	0.997	102	0%	192	43.8%	0	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
SFRP2	6423	genome.wustl.edu	37	4	154709841	154709841	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003013.2	-1	reviewed	p.C50fs	1.000	-	-	-	-	-	-	-	-	-	superfamily_Frizzled cysteine-rich domain,HMMPfam_Fz,HMMSmart_SM00063
AADAT	51166	genome.wustl.edu	37	4	170999716	170999716	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016228.3	-1	reviewed	p.N130D	1.000	114	0%	95	15.8%	1	0%	benign(0.003)	tolerated(0.32)	neutral(0.024)	HMMPfam_Aminotran_1_2,superfamily_PLP-dependent transferases
ENSG00000249556	0	genome.wustl.edu	37	5	14652415	14652415	+	RNA	SNP	T	T	C	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000515374	+1	novel	NULL	1.000	35	0%	18	55.6%	3107	0.2%	-	-	-	-
PTGER4	5734	genome.wustl.edu	37	5	40681316	40681316	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000958.2	+1	reviewed	p.P74L	1.000	47	0%	69	52.2%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_7tm_1,superfamily_SSF81321
FCHO2	115548	genome.wustl.edu	37	5	72330527	72330527	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138782.2	+1	validated	p.E280D	1.000	120	0%	131	29%	4	0%	possibly_damaging(0.947)	deleterious(0.01)	deleterious(0.796)	NULL
THBS4	7060	genome.wustl.edu	37	5	79378906	79378906	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003248.4	+1	reviewed	p.T943I	1.000	87	0%	176	25%	3	33.3%	benign(0.13)	deleterious(0.03)	neutral(0.376)	HMMPfam_TSP_C,superfamily_ConA_like_lec_gl
ZFYVE16	9765	genome.wustl.edu	37	5	79729995	79729995	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105251.1	+1	validated	p.S10N	1.000	258	0%	194	25.8%	2	0%	benign(0.008)	tolerated(0.07)	neutral(0.319)	NULL
ZFYVE16	9765	genome.wustl.edu	37	5	79741187	79741187	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105251.1	+1	validated	p.S896Y	1.000	158	0%	107	27.1%	3	33.3%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
FAM151B	167555	genome.wustl.edu	37	5	79809543	79809543	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_205548.1	+1	predicted	p.T91I	0.002	124	0%	90	17.8%	1	0%	benign(0.038)	tolerated(0.17)	neutral(0.061)	HMMPfam_DUF2181
LOC100131573	100131573	genome.wustl.edu	37	5	93928583	93928583	+	Silent	SNP	A	A	G	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001716404.1	+1	model	p.E77	0.758	29	0%	15	33.3%	0	-	-	-	-	NULL
TRIM36	55521	genome.wustl.edu	37	5	114466317	114466317	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018700.3	-1	reviewed	p.R602C	1.000	76	1.3%	155	43.2%	4	50%	possibly_damaging(0.888)	deleterious(0.01)	deleterious(0.753)	NULL
AQPEP	206338	genome.wustl.edu	37	5	115350974	115350974	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173800.4	+1	validated	p.V826F	0.001	346	0%	354	23.2%	0	-	possibly_damaging(0.882)	deleterious(0)	deleterious(0.789)	NULL
NEUROG1	4762	genome.wustl.edu	37	5	134870696	134870696	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006161.2	-1	validated	p.T229A	0.001	92	0%	198	12.1%	0	-	possibly_damaging(0.588)	tolerated(0.29)	neutral(0.232)	NULL
PKD2L2	27039	genome.wustl.edu	37	5	137230126	137230126	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014386.2	+1	validated	p.R118S	1.000	133	0%	279	47%	0	-	possibly_damaging(0.676)	tolerated(0.35)	neutral(0.261)	HMMPfam_PKD_channel
SIL1	64374	genome.wustl.edu	37	5	138282844	138282844	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001037633.1	-1	reviewed	p.L450	1.000	35	0%	41	14.6%	52	32.6%	-	-	-	NULL
PCDHB6	56130	genome.wustl.edu	37	5	140531173	140531173	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018939.2	+1	reviewed	p.N445	0.998	109	0%	260	44.2%	0	-	-	-	-	HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_Cadherin
PCDHGA4	56111	genome.wustl.edu	37	5	140735426	140735426	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018917.2	+1	reviewed	p.P220L	0.287	33	0%	66	48.5%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGA9	56107	genome.wustl.edu	37	5	140782712	140782712	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018921.2	+1	reviewed	p.R65C	1.000	35	0%	103	41.7%	0	-	-	-	-	HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like
PCDHGB6	56100	genome.wustl.edu	37	5	140787977	140787977	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018926.2	+1	reviewed	p.A70T	0.000	205	0%	458	41.7%	1	0%	benign(0.017)	tolerated(0.57)	neutral(0.007)	HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like
PCDHGB7	56099	genome.wustl.edu	37	5	140797619	140797619	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018927.2	+1	reviewed	p.E65K	0.992	162	0%	395	47.1%	0	-	benign(0)	tolerated(1)	-	HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like
HMGXB3	22993	genome.wustl.edu	37	5	149431388	149431388	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014983.2	+1	validated	p.R1171H	1.000	85	0%	62	51.6%	47	48.9%	benign(0.002)	tolerated(0.43)	neutral(0.013)	NULL
ARSI	340075	genome.wustl.edu	37	5	149677807	149677807	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001012301.2	-1	validated	p.R227H	0.821	86	0%	130	47.7%	0	-	possibly_damaging(0.782)	deleterious(0.01)	deleterious(0.699)	HMMPfam_Sulfatase,superfamily_Alkaline phosphatase-like
NDST1	3340	genome.wustl.edu	37	5	149907716	149907716	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001543.4	+1	validated	p.W288*	1.000	67	1.5%	98	34.7%	5	20%	-	-	-	NULL
FAT2	2196	genome.wustl.edu	37	5	150908936	150908936	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001447.2	-1	reviewed	p.A3277T	0.000	87	0%	112	49.1%	0	-	benign(0.103)	tolerated(0.24)	neutral(0.045)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
GRIA1	2890	genome.wustl.edu	37	5	153078482	153078482	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000827.3	+1	reviewed	p.R434H	1.000	101	0%	43	41.9%	0	-	benign(0.076)	tolerated(0.07)	neutral(0.325)	HMMSmart_SM00079,HMMPfam_Lig_chan-Glu_bd,superfamily_Periplasmic binding protein-like II
CCNG1	900	genome.wustl.edu	37	5	162868149	162868149	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004060.3	+1	reviewed	p.E110D	1.000	175	0%	308	30.8%	30	43.3%	possibly_damaging(0.943)	deleterious(0)	deleterious(0.832)	HMMSmart_SM00385,HMMPfam_Cyclin_N,superfamily_Cyclin-like
SFXN1	94081	genome.wustl.edu	37	5	174953712	174953712	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022754.5	+1	validated	p.R315H	0.078	183	0%	141	47.5%	22	63.6%	benign(0.113)	tolerated(0.54)	neutral(0.017)	HMMPfam_Mtc
NOP16	51491	genome.wustl.edu	37	5	175815448	175815448	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000341213	-1	known	p.R7H	1.000	50	0%	62	16.1%	58	10.3%	benign(0.142)	tolerated(0.27)	neutral(0.045)	HMMPfam_Nop16
ADAMTS2	9509	genome.wustl.edu	37	5	178541161	178541161	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014244.2	-1	reviewed	p.D1115N	0.994	212	0%	292	46.2%	4	0%	benign(0.103)	tolerated(0.41)	neutral(0.023)	NULL
PRPF4B	8899	genome.wustl.edu	37	6	4050109	4050109	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003913.4	+1	reviewed	p.L724V	1.000	99	0%	88	43.2%	15	53.3%	unknown(0)	tolerated(0.29)	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
PRPF4B	8899	genome.wustl.edu	37	6	4059020	4059020	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003913.4	+1	reviewed	p.Y931F	1.000	79	0%	64	14.1%	24	8.3%	benign(0.059)	tolerated(0.23)	neutral(0.045)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
CAGE1	285782	genome.wustl.edu	37	6	7365732	7365732	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_205864.2	-1	validated	p.Y558C	0.998	191	0%	160	38.1%	0	-	probably_damaging(0.956)	deleterious(0.01)	deleterious(0.805)	NULL
KIF13A	63971	genome.wustl.edu	37	6	17817340	17817340	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000358380	-1	known	p.P31L	0.001	96	0%	80	31.2%	4	50%	-	-	-	NULL
ITPR3	3710	genome.wustl.edu	37	6	33636934	33636934	+	Splice_Site	SNP	G	G	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002224.2	+1	validated	e18+1	1.000	31	0%	64	50%	12	100%	-	-	-	-
KIF6	221458	genome.wustl.edu	37	6	39513422	39513422	+	Silent	SNP	T	T	C	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000458470	-1	known	p.Q300R	0.999	142	0%	173	49.1%	0	-	-	-	-	NULL
LRFN2	57497	genome.wustl.edu	37	6	40360458	40360458	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020737.1	-1	provisional	p.G532S	0.998	42	0%	61	36.1%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ICK	22858	genome.wustl.edu	37	6	52878499	52878499	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014920.3	-1	reviewed	p.P371	0.000	322	0%	236	45.3%	4	50%	-	-	-	NULL
DST	667	genome.wustl.edu	37	6	56457077	56457077	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015548.4	-1	reviewed	p.A1646V	1.000	142	0%	92	42.4%	0	-	benign(0.058)	-	-	HMMSmart_SM00150,superfamily_Spectrin repeat
KCNQ5	56479	genome.wustl.edu	37	6	73332307	73332307	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019842.3	+1	reviewed	p.H130	1.000	10	0%	22	45.5%	0	-	-	-	-	superfamily_Voltage-gated potassium channels
EEF1A1	1915	genome.wustl.edu	37	6	74227567	74227567	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001402.5	-1	reviewed	p.T452N	1.000	27	0%	89	33.7%	7872	43.2%	possibly_damaging(0.863)	deleterious(0)	deleterious(0.778)	NULL
MYO6	4646	genome.wustl.edu	37	6	76596585	76596585	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004999.3	+1	reviewed	p.G844	1.000	91	0%	148	39.9%	48	45.8%	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
GJB7	375519	genome.wustl.edu	37	6	87994267	87994267	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198568.2	-1	validated	p.Y122H	1.000	81	0%	67	32.8%	0	-	possibly_damaging(0.757)	tolerated(0.54)	neutral(0.287)	HMMPfam_Connexin
MCHR2	84539	genome.wustl.edu	37	6	100390901	100390901	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040179.1	-1	validated	p.Y171H	1.000	88	0%	43	18.6%	0	-	possibly_damaging(0.75)	deleterious(0)	deleterious(0.720)	HMMPfam_7tm_1,superfamily_SSF81321
KIAA1244	57221	genome.wustl.edu	37	6	138566717	138566717	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020340.4	+1	validated	p.Q218H	0.993	191	0%	84	10.7%	6	0%	possibly_damaging(0.852)	deleterious(0.04)	deleterious(0.676)	NULL
HIVEP2	3097	genome.wustl.edu	37	6	143091917	143091917	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006734.3	-1	provisional	p.S1320L	0.965	52	0%	70	41.4%	3	66.6%	benign(0.002)	tolerated(0.12)	neutral(0.261)	NULL
SHPRH	257218	genome.wustl.edu	37	6	146262963	146262963	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042683.2	-1	validated	p.L762	1.000	73	0%	41	46.3%	1	0%	benign(0.069)	-	-	HMMPfam_SNF2_N,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
IPCEF1	26034	genome.wustl.edu	37	6	154567877	154567877	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130699.1	-1	validated	p.R32W	1.000	167	0%	118	44.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
NOX3	50508	genome.wustl.edu	37	6	155728350	155728350	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015718.2	-1	reviewed	p.D498	0.953	229	0%	136	11%	0	-	-	-	-	HMMPfam_NAD_binding_6,superfamily_SSF52343
TMEM181	57583	genome.wustl.edu	37	6	159029707	159029707	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020823.1	+1	validated	p.L411S	0.962	299	0%	555	10.6%	5	60%	benign(0.409)	deleterious(0)	deleterious(0.577)	NULL
MLLT4	4301	genome.wustl.edu	37	6	168271106	168271106	+	Silent	SNP	A	A	G	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040001.1	+1	validated	p.Q114	0.976	120	0%	111	48.6%	3	33.3%	-	-	-	HMMPfam_RA,HMMSmart_RA
KIF25	3834	genome.wustl.edu	37	6	168439344	168439344	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030615.2	+1	reviewed	p.S143	0.000	161	0%	264	28.8%	0	-	-	-	-	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
HEATR2	54919	genome.wustl.edu	37	7	801458	801458	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000440747	+1	known	p.R315C	0.000	121	0%	144	50.7%	15	26.6%	-	-	-	superfamily_ARM repeat
INTS1	26173	genome.wustl.edu	37	7	1518057	1518057	+	Silent	SNP	G	G	A	rs180881535	by1000genomes	TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080453.2	-1	validated	p.I1525	0.132	35	0%	63	42.9%	33	36.3%	-	-	-	NULL
RADIL	55698	genome.wustl.edu	37	7	4874858	4874858	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018059.4	-1	validated	p.Y266H	1.000	27	0%	42	35.7%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	superfamily_SMAD/FHA domain
TNRC18	84629	genome.wustl.edu	37	7	5413796	5413796	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080495.2	-1	provisional	p.P1040L	0.952	8	0.000	16	0.250	1	0%	probably_damaging(0.996)	tolerated(0.11)	deleterious(0.733)	NULL
TMEM196	256130	genome.wustl.edu	37	7	19765233	19765234	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	AG	AG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152774.3	-1	validated	p.S121fs	0.992:1.000	-	-	-	-	-	-	-	-	-	NULL
CCDC126	90693	genome.wustl.edu	37	7	23682550	23682550	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138771.3	+1	validated	p.A80V	1.000	115	0%	222	38.3%	5	20%	probably_damaging(0.957)	tolerated(0.08)	deleterious(0.701)	NULL
OSBPL3	26031	genome.wustl.edu	37	7	24905044	24905044	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015550.2	-1	reviewed	p.S197N	1.000	167	0%	125	11.2%	1	0%	benign(0.001)	tolerated(0.65)	neutral(0.003)	NULL
EEPD1	80820	genome.wustl.edu	37	7	36336723	36336723	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030636.2	+1	validated	p.S479	1.000	272	0%	218	30.3%	8	25%	-	-	-	HMMPfam_Exo_endo_phos,superfamily_DNase I-like
DDX56	54606	genome.wustl.edu	37	7	44607782	44607782	+	Missense_Mutation	SNP	C	C	T	rs188954038	by1000genomes	TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019082.2	-1	reviewed	p.R475Q	1.000	115	0%	113	41.6%	149	40.9%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	NULL
NACAD	23148	genome.wustl.edu	37	7	45124772	45124774	+	In_Frame_Del	DEL	TCT	TCT	-	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	TCT	TCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000258775	-1	known	p.E337in_frame_del	0.007:0.009:0.009	-	-	-	-	-	-	-	-	-	NULL
ADCY1	107	genome.wustl.edu	37	7	45725634	45725634	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021116.2	+1	reviewed	p.R716H	0.000	77	0%	53	18.9%	0	-	benign(0.003)	tolerated(0.12)	neutral(0.261)	NULL
PKD1L1	168507	genome.wustl.edu	37	7	47930200	47930200	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138295.2	-1	reviewed	p.G872D	0.000	64	0%	48	41.7%	0	-	benign(0.042)	tolerated(0.72)	neutral(0.004)	NULL
POMZP3	22932	genome.wustl.edu	37	7	76247780	76247780	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000454397	-1	known	p.F127Y	0.207	40	0%	39	12.8%	0	-	unknown(0)	deleterious(0.04)	-	NULL
AKAP9	10142	genome.wustl.edu	37	7	91737966	91737966	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000394534	+1	known	p.T1748I	0.000	64	0%	64	40.6%	2	0%	unknown(0)	deleterious(0.01)	-	NULL
RBM48	84060	genome.wustl.edu	37	7	92164020	92164021	+	Frame_Shift_Del	DEL	TT	TT	-	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	TT	TT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032120.2	+1	validated	p.L252fs	0.000:0.000	-	-	-	-	-	-	-	-	-	NULL
GNGT1	2792	genome.wustl.edu	37	7	93540200	93540200	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021955.3	+1	validated	p.K65	1.000	72	0%	62	24.2%	0	-	-	-	-	HMMPfam_G-gamma,HMMSmart_SM00224,superfamily_Transducin (heterotrimeric G protein) gamma chain
TFR2	7036	genome.wustl.edu	37	7	100238344	100238344	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003227.3	-1	reviewed	p.Q146H	0.244	45	0%	37	29.7%	0	-	benign(0.004)	deleterious(0.04)	neutral(0.349)	NULL
GIGYF1	64599	genome.wustl.edu	37	7	100281723	100281723	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022574.4	-1	validated	p.P596	0.995	30	0%	56	46.4%	8	12.5%	-	-	-	NULL
MUC17	140453	genome.wustl.edu	37	7	100676126	100676126	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040105.1	+1	provisional	p.V477I	0.002	216	0%	303	44.9%	0	-	unknown(0)	-	-	NULL
C7orf60	154743	genome.wustl.edu	37	7	112462251	112462251	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152556.2	-1	validated	p.R256*	1.000	82	0%	66	40.9%	2	50%	-	-	-	NULL
LRRC4	64101	genome.wustl.edu	37	7	127670408	127670408	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022143.4	-1	validated	p.R96C	1.000	322	0%	555	11%	1	0%	possibly_damaging(0.845)	deleterious(0.05)	deleterious(0.669)	HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like
PRRT4	401399	genome.wustl.edu	37	7	127992593	127992593	+	Silent	SNP	C	C	G	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001114726.2	-1	validated	p.A339	0.899	90	0%	167	11.4%	0	-	-	-	-	NULL
PLXNA4	91584	genome.wustl.edu	37	7	132192719	132192719	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020911.1	-1	validated	p.V245G	1.000	88	0%	43	16.3%	0	-	possibly_damaging(0.744)	deleterious(0)	deleterious(0.718)	HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain
CALD1	800	genome.wustl.edu	37	7	134613615	134613615	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033138.3	+1	reviewed	p.Q61R	1.000	45	0%	59	28.8%	23	17.3%	benign(0.004)	-	-	HMMPfam_Caldesmon
MKRN1	23608	genome.wustl.edu	37	7	140159711	140159711	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013446.3	-1	validated	p.Q114*	1.000	218	0%	237	34.6%	44	38.6%	-	-	-	NULL
EPHB6	2051	genome.wustl.edu	37	7	142565757	142565757	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004445.3	+1	reviewed	p.R623Q	0.983	92	0%	121	41.3%	0	-	probably_damaging(0.999)	tolerated(0.25)	deleterious(0.527)	NULL
OR6V1	346517	genome.wustl.edu	37	7	142750338	142750338	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001667.1	+1	provisional	p.G301W	0.000	78	0%	31	48.4%	0	-	possibly_damaging(0.865)	deleterious(0)	deleterious(0.780)	superfamily_Family A G protein-coupled receptor-like
SLC4A2	6522	genome.wustl.edu	37	7	150763627	150763627	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003040.3	+1	validated	p.A201V	0.158	7	0.000	32	0.406	4	75%	unknown(0)	tolerated(0.29)	-	NULL
CLDN23	137075	genome.wustl.edu	37	8	8560483	8560483	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_194284.2	+1	validated	p.R192H	0.831	8	0.000	13	0.308	7	42.8%	possibly_damaging(0.763)	tolerated(0.58)	neutral(0.288)	NULL
ERI1	90459	genome.wustl.edu	37	8	8875838	8875838	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153332.3	+1	validated	p.Q205R	1.000	97	0%	121	27.3%	4	25%	benign(0.146)	tolerated(0.33)	neutral(0.037)	HMMSmart_EXOIII,superfamily_RNaseH_fold,HMMPfam_Exonuc_X-T
RP1L1	94137	genome.wustl.edu	37	8	10470652	10470652	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178857.5	-1	validated	p.G319D	1.000	85	0%	147	27.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
LOXL2	4017	genome.wustl.edu	37	8	23198555	23198555	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002318.2	-1	reviewed	p.C231	0.936	121	0%	201	10.4%	16	6.2%	-	-	-	HMMPfam_SRCR,PatternScan_SRCR_1,HMMSmart_SR,superfamily_Srcr_receptor
ADAM28	10863	genome.wustl.edu	37	8	24171023	24171023	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014265.4	+1	reviewed	p.C169Y	1.000	257	0%	164	31.7%	15	20%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ADAM7	8756	genome.wustl.edu	37	8	24324407	24324407	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000380789	+1	known	p.V162A	0.000	88	0%	81	28.4%	0	-	benign(0.001)	tolerated(0.27)	neutral(0.034)	NULL
DOCK5	80005	genome.wustl.edu	37	8	25267715	25267715	+	Silent	SNP	T	T	C	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024940.6	+1	validated	p.T1835	0.000	135	0%	196	24%	69	20.2%	-	-	-	NULL
BRF2	55290	genome.wustl.edu	37	8	37706118	37706118	+	Silent	SNP	T	T	C	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018310.2	-1	reviewed	p.Q70	0.879	355	0%	863	12.5%	22	4.5%	-	-	-	superfamily_Cyclin_like
C8orf46	254778	genome.wustl.edu	37	8	67417635	67417635	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152765.3	+1	validated	p.T51M	0.001	21	0%	24	37.5%	0	-	possibly_damaging(0.609)	deleterious(0.03)	deleterious(0.576)	NULL
KIAA1429	25962	genome.wustl.edu	37	8	95501071	95501071	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015496.3	-1	validated	p.R1768W	1.000	156	0%	101	47.5%	65	36.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
RAD21	5885	genome.wustl.edu	37	8	117864799	117864799	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006265.2	-1	reviewed	p.R437H	1.000	171	0%	150	44.7%	50	56%	possibly_damaging(0.754)	deleterious(0.04)	deleterious(0.627)	NULL
ZHX2	22882	genome.wustl.edu	37	8	123966062	123966062	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014943.3	+1	reviewed	p.R771Q	0.001	112	0%	99	45.5%	5	20%	benign(0.029)	tolerated(0.46)	neutral(0.013)	NULL
NDRG1	10397	genome.wustl.edu	37	8	134251220	134251220	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135242.1	-1	reviewed	p.S362R	1.000	47	0%	58	46.6%	117	40.1%	possibly_damaging(0.783)	deleterious(0.03)	deleterious(0.657)	NULL
FAM135B	51059	genome.wustl.edu	37	8	139153537	139153537	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015912.3	-1	validated	p.R1232W	0.993	287	0%	156	46.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DUF676,superfamily_alpha/beta-Hydrolases
FLJ43860	389690	genome.wustl.edu	37	8	142444105	142444105	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207414.2	-1	validated	p.S1304G	0.522	107	0%	210	23.8%	0	-	benign(0.068)	tolerated(0.22)	neutral(0.046)	superfamily_ARM repeat
BAI1	575	genome.wustl.edu	37	8	143604036	143604036	+	Silent	SNP	A	A	G	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001702.2	+1	reviewed	p.G1070	1.000	122	0%	224	37.9%	0	-	-	-	-	HMMPfam_7tm_2
ZNF707	286075	genome.wustl.edu	37	8	144776135	144776135	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001100598.1	+1	validated	p.A184V	0.012	6	0.000	8	0.625	6	66.6%	benign(0)	tolerated(0.06)	neutral(0.323)	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355
ZNF707	286075	genome.wustl.edu	37	8	144776688	144776688	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001100598.1	+1	validated	p.H368	0.000	17	0%	41	43.9%	9	44.4%	-	-	-	PatternScan_ZINC_FINGER_C2H2_1
RECQL4	9401	genome.wustl.edu	37	8	145740619	145740619	+	Silent	SNP	C	C	A	rs145615931	by1000genomes	TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000428558	-1	known	p.P466	0.000	46	0%	56	41.1%	10	20%	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
ZNF517	340385	genome.wustl.edu	37	8	146032774	146032774	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_213605.2	+1	validated	p.A158V	0.000	26	0%	42	40.5%	3	66.6%	benign(0.226)	tolerated(0.58)	neutral(0.028)	NULL
GLIS3	169792	genome.wustl.edu	37	9	3856176	3856176	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042413.1	-1	reviewed	p.P769H	0.984	161	0%	155	40.6%	16	43.7%	probably_damaging(0.978)	deleterious(0)	deleterious(0.865)	NULL
PTPRD	5789	genome.wustl.edu	37	9	8460542	8460542	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002839.3	-1	reviewed	p.D1248	1.000	136	0%	81	40.7%	0	-	-	-	-	NULL
CNTLN	54875	genome.wustl.edu	37	9	17330634	17330634	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017738.2	+1	validated	p.P449H	0.108	37	0%	43	37.2%	0	-	benign(0.075)	tolerated(0.07)	neutral(0.324)	NULL
MTAP	4507	genome.wustl.edu	37	9	21837985	21837985	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002451.3	+1	reviewed	p.E142	0.981	181	0%	93	43%	18	44.4%	-	-	-	HMMPfam_PNP_UDP_1,superfamily_Purine and uridine phosphorylases
C9orf72	203228	genome.wustl.edu	37	9	27556712	27556712	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018325.2	-1	validated	p.N313S	1.000	99	0%	54	46.3%	8	37.5%	benign(0.049)	tolerated(0.46)	neutral(0.015)	NULL
TRPM3	80036	genome.wustl.edu	37	9	73151332	73151332	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001007471.2	-1	reviewed	p.R1554M	0.990	99	0%	142	43.7%	0	-	probably_damaging(0.991)	deleterious(0.03)	deleterious(0.808)	NULL
GKAP1	80318	genome.wustl.edu	37	9	86403525	86403525	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025211.3	-1	reviewed	p.E143	0.998	160	0%	211	31.3%	8	37.5%	-	-	-	NULL
OGN	4969	genome.wustl.edu	37	9	95165630	95165630	+	Silent	SNP	T	T	C	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014057.3	-1	reviewed	p.A20	1.000	152	0%	119	14.3%	0	-	-	-	-	NULL
C9orf102	375748	genome.wustl.edu	37	9	98728980	98728980	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000402838	+1	known	p.R17*	0.999	139	0%	95	53.7%	2	50%	probably_damaging(0.969)	deleterious(0)	deleterious(0.856)	NULL
RNF20	56254	genome.wustl.edu	37	9	104312896	104312896	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019592.5	+1	reviewed	p.L367	1.000	86	0%	46	28.3%	7	14.2%	-	-	-	NULL
OR13F1	138805	genome.wustl.edu	37	9	107267039	107267039	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004485.1	+1	provisional	p.L166	0.209	195	0%	106	40.6%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
KLF4	9314	genome.wustl.edu	37	9	110251228	110251228	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004235.4	-1	validated	p.A37T	0.999	28	0%	37	27%	1	100%	probably_damaging(0.957)	tolerated(0.05)	deleterious(0.746)	NULL
PTGR1	22949	genome.wustl.edu	37	9	114348276	114348276	+	Splice_Site	SNP	A	A	G	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012212.3	-1	reviewed	e4+2	1.000	100	0%	52	23.1%	2	50%	-	-	-	-
C9orf91	203197	genome.wustl.edu	37	9	117389239	117389239	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153045.3	+1	validated	p.R93G	1.000	47	0%	36	36.1%	6	33.3%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
ASTN2	23245	genome.wustl.edu	37	9	119770371	119770371	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198187.3	-1	reviewed	p.G531R	1.000	110	0%	69	49.3%	0	-	possibly_damaging(0.773)	deleterious(0)	deleterious(0.732)	NULL
OR1Q1	158131	genome.wustl.edu	37	9	125377712	125377712	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012364.1	+1	provisional	p.G233fs	0.000	-	-	-	-	-	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
GPR144	347088	genome.wustl.edu	37	9	127231556	127231556	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000334810	+1	known	p.A789fs	0.998	-	-	-	-	-	-	-	-	-	HMMPfam_7tm_2
ENTPD2	954	genome.wustl.edu	37	9	139944937	139944937	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_203468.1	-1	reviewed	p.L276	0.000	45	0%	55	25.5%	74	21.6%	-	-	-	HMMPfam_GDA1_CD39
DPP7	29952	genome.wustl.edu	37	9	140007875	140007875	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013379.2	-1	reviewed	p.A187T	0.999	27	0%	42	38.1%	331	25%	unknown(0)	-	-	HMMPfam_Peptidase_S28,superfamily_SSF53474
CALML3	810	genome.wustl.edu	37	10	5567427	5567427	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005185.2	+1	validated	p.R127W	1.000	36	0%	76	48.7%	0	-	probably_damaging(0.98)	deleterious(0)	deleterious(0.869)	HMMSmart_SM00054,HMMPfam_efhand,superfamily_EF-hand
ITIH2	3698	genome.wustl.edu	37	10	7755153	7755153	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002216.2	+1	validated	p.D124	0.988	110	0%	114	13.2%	0	-	-	-	-	HMMSmart_VIT,HMMPfam_VIT
ITIH2	3698	genome.wustl.edu	37	10	7769789	7769790	+	Frame_Shift_Ins	INS	-	-	GGGC	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002216.2	+1	validated	p.E428fs	1.000:0.988	-	-	-	-	-	-	-	-	-	HMMPfam_VWA,HMMSmart_VWA,superfamily_SSF53300
ITIH2	3698	genome.wustl.edu	37	10	7776907	7776907	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002216.2	+1	validated	p.A604T	0.000	64	0%	51	37.3%	0	-	benign(0)	tolerated(0.15)	neutral(0.241)	NULL
SUV39H2	79723	genome.wustl.edu	37	10	14939419	14939419	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024670.3	+1	provisional	p.S191L	1.000	117	0%	167	43.7%	6	16.6%	probably_damaging(0.966)	tolerated(0.18)	neutral(0.464)	HMMPfam_SET,HMMSmart_SET,superfamily_SSF82199
PTCHD3	374308	genome.wustl.edu	37	10	27703018	27703018	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001034842.3	-1	validated	p.P54	0.000	21	0%	27	40.7%	0	-	-	-	-	NULL
GDF2	2658	genome.wustl.edu	37	10	48413918	48413918	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016204.1	-1	reviewed	p.R317Q	0.003	69	0%	42	21.4%	0	-	benign(0.147)	tolerated(0.29)	neutral(0.042)	superfamily_Cystine-knot cytokines
SLC18A3	6572	genome.wustl.edu	37	10	50820256	50820256	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003055.2	+1	reviewed	p.P490	0.984	38	0%	54	50%	0	-	-	-	-	NULL
PCDH15	65217	genome.wustl.edu	37	10	55591228	55591228	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142763.1	-1	reviewed	p.R1355H	1.000	193	0%	341	39.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TET1	80312	genome.wustl.edu	37	10	70332459	70332459	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030625.2	+1	validated	p.V122I	0.492	42	0%	73	31.5%	0	-	benign(0)	tolerated(1)	-	NULL
CDH23	64072	genome.wustl.edu	37	10	73447441	73447441	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022124.5	+1	reviewed	p.A675V	1.000	66	0%	71	12.7%	0	-	benign(0.001)	tolerated(0.37)	neutral(0.019)	superfamily_Cadherin-like
CDH23	64072	genome.wustl.edu	37	10	73553250	73553250	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022124.5	+1	reviewed	p.P2189S	0.972	52	0%	41	24.4%	0	-	possibly_damaging(0.839)	tolerated(0.2)	neutral(0.369)	HMMPfam_Cadherin,superfamily_Cadherin-like
PLA2G12B	84647	genome.wustl.edu	37	10	74714325	74714325	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032562.2	-1	validated	p.R40Q	1.000	71	0%	53	13.2%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_PLA2G12
TTC18	118491	genome.wustl.edu	37	10	75056814	75056814	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145170.3	-1	validated	p.V614I	1.000	214	0%	122	35.2%	0	-	possibly_damaging(0.472)	tolerated(0.31)	neutral(0.183)	NULL
USP54	159195	genome.wustl.edu	37	10	75335312	75335312	+	Silent	SNP	A	A	G	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152586.3	-1	provisional	p.N35	1.000	130	0%	84	11.9%	2	0%	-	-	-	superfamily_Cysteine proteinases
SEC24C	9632	genome.wustl.edu	37	10	75529764	75529768	+	Frame_Shift_Del	DEL	CTTAC	CTTAC	-	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	CTTAC	CTTAC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004922.2	+1	reviewed	p.L952fs	0.998:1.000:1.000:0.992:1.000	-	-	-	-	-	-	-	-	-	superfamily_C-terminal gelsolin-like domain of Sec23/24
OPN4	94233	genome.wustl.edu	37	10	88417836	88417836	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001030015.2	+1	validated	p.A124V	0.991	224	0.4%	271	20.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_SSF81321
PTEN	5728	genome.wustl.edu	37	10	89692904	89692904	+	Missense_Mutation	SNP	C	C	G	rs121909224	byCluster	TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000371953	+1	known	p.R130G	1.000	175	0%	121	35.5%	28	42.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DSPc,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II
PTEN	5728	genome.wustl.edu	37	10	89725123	89725123	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000371953	+1	known	p.S370fs	1.000	-	-	-	-	-	-	-	-	-	NULL
PDE6C	5146	genome.wustl.edu	37	10	95405722	95405722	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006204.3	+1	reviewed	p.T618M	1.000	294	0%	163	41.7%	0	-	possibly_damaging(0.836)	tolerated(0.07)	deleterious(0.639)	HMMPfam_PDEase_I,HMMSmart_HDc,superfamily_SSF109604
PKD2L1	9033	genome.wustl.edu	37	10	102088970	102088970	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016112.2	-1	reviewed	p.L116P	0.998	115	0%	94	33%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
POLL	27343	genome.wustl.edu	37	10	103344556	103344556	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013274.3	-1	reviewed	p.A232T	0.140	82	0%	90	31.1%	13	38.4%	benign(0)	tolerated(0.13)	neutral(0.253)	NULL
SH3PXD2A	9644	genome.wustl.edu	37	10	105361747	105361747	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000420222	-1	known	p.V1003I	0.833	86	0%	180	38.3%	3	0%	-	-	-	HMMSmart_SM00326,superfamily_SH3-domain
INPP5F	22876	genome.wustl.edu	37	10	121551601	121551601	+	RNA	SNP	C	C	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_003251.1	+1	reviewed	NULL	0.002	170	0%	404	41.6%	0	-	-	-	-	-
FGFR2	2263	genome.wustl.edu	37	10	123274794	123274794	+	Missense_Mutation	SNP	T	T	C	rs121913478	byCluster	TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022970.3	-1	reviewed	p.Y376C	1.000	101	0%	89	41.6%	69	39.1%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
GPR26	2849	genome.wustl.edu	37	10	125434427	125434427	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153442.3	+1	validated	p.F254	1.000	139	0%	125	37.6%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
C10orf90	118611	genome.wustl.edu	37	10	128192818	128192818	+	Silent	SNP	T	T	C	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004298.2	-1	validated	p.E317	0.000	160	0%	183	44.8%	0	-	-	-	-	NULL
DOCK1	1793	genome.wustl.edu	37	10	129152936	129152936	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000398025	+1	known	p.Y1121	0.993	376	0.3%	298	41.3%	8	50%	-	-	-	NULL
MUC2	4583	genome.wustl.edu	37	11	1102461	1102461	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002457.2	+1	reviewed	p.F2611	0.006	61	0%	98	41.8%	1	100%	-	-	-	HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1
MUC5B	727897	genome.wustl.edu	37	11	1264307	1264307	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002458.1	+1	validated	p.S2069N	0.000	480	0%	786	38%	11	9%	possibly_damaging(0.892)	-	-	NULL
TRPM5	29850	genome.wustl.edu	37	11	2434174	2434174	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014555.3	-1	validated	p.T722I	0.993	39	0%	80	31.2%	0	-	possibly_damaging(0.893)	tolerated(0.21)	neutral(0.396)	NULL
NUP98	4928	genome.wustl.edu	37	11	3797196	3797196	+	Silent	SNP	A	A	G	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016320.4	-1	reviewed	p.S137	0.998	107	0%	128	43.8%	4	75%	-	-	-	superfamily_SSF88633
RRM1	6240	genome.wustl.edu	37	11	4139574	4139574	+	Silent	SNP	T	T	C	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001033.3	+1	reviewed	p.D225	1.000	252	0%	382	41.6%	15	26.6%	-	-	-	HMMPfam_Ribonuc_red_lgC,superfamily_SSF51998
ILK	3611	genome.wustl.edu	37	11	6631189	6631189	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001014794.1	+1	reviewed	p.R334Q	1.000	121	0.8%	240	38.8%	107	39.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pkinase_Tyr,superfamily_Kinase_like
ST5	6764	genome.wustl.edu	37	11	8720482	8720482	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005418.3	-1	reviewed	p.Q980E	1.000	129	0%	128	38.3%	28	64.2%	benign(0.041)	tolerated(0.65)	neutral(0.005)	NULL
ST5	6764	genome.wustl.edu	37	11	8728747	8728747	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005418.3	-1	reviewed	p.R819H	1.000	95	0%	92	37%	27	40.7%	probably_damaging(0.978)	tolerated(0.31)	neutral(0.448)	HMMPfam_DENN,HMMSmart_SM00799
MYOD1	4654	genome.wustl.edu	37	11	17742960	17742960	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002478.4	+1	reviewed	p.E290K	0.889	10	0.000	7	0.857	0	-	benign(0.005)	tolerated(0.64)	neutral(0.003)	NULL
LGR4	55366	genome.wustl.edu	37	11	27402241	27402241	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018490.2	-1	validated	p.P283H	1.000	61	0%	45	33.3%	25	52%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF52047,superfamily_SSF52058
CAPRIN1	4076	genome.wustl.edu	37	11	34119324	34119324	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_203364.2	+1	validated	p.W694*	1.000	59	0%	43	34.9%	10	50%	-	-	-	NULL
OR9G4	283189	genome.wustl.edu	37	11	56510405	56510405	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005284.1	-1	provisional	p.V295M	0.464	228	0%	276	47.1%	0	-	possibly_damaging(0.873)	tolerated(0.35)	neutral(0.360)	HMMPfam_7tm_1,superfamily_SSF81321
STIP1	10963	genome.wustl.edu	37	11	63964814	63964814	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006819.2	+1	validated	p.Y248	0.071	112	0%	142	45.8%	104	43.2%	-	-	-	HMMPfam_TPR_1,HMMSmart_TPR,superfamily_SSF48452
VEGFB	7423	genome.wustl.edu	37	11	64003397	64003397	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003377.3	+1	provisional	p.C72	0.697	130	0%	139	19.4%	132	13.6%	-	-	-	HMMPfam_PDGF,HMMSmart_SM00141,PatternScan_PDGF_1,superfamily_Cystine-knot cytokines
SLC22A12	116085	genome.wustl.edu	37	11	64368983	64368983	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144585.2	+1	reviewed	p.G541D	0.000	77	0%	139	19.4%	0	-	benign(0.002)	tolerated(0.64)	neutral(0.003)	NULL
BATF2	116071	genome.wustl.edu	37	11	64756889	64756889	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138456.3	-1	validated	p.S179	0.000	30	0%	33	36.4%	2	50%	-	-	-	NULL
C11orf2	738	genome.wustl.edu	37	11	64875430	64875430	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013265.2	+1	provisional	p.A221T	0.998	19	0%	28	32.1%	76	44.7%	possibly_damaging(0.772)	deleterious(0.01)	deleterious(0.693)	NULL
NDUFV1	4723	genome.wustl.edu	37	11	67378921	67378921	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007103.3	+1	reviewed	p.G321S	1.000	89	0%	110	49.1%	85	1.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SLBB
TCIRG1	10312	genome.wustl.edu	37	11	67817647	67817647	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006019.2	+1	reviewed	p.I721T	1.000	106	0.9%	165	12.1%	144	22.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_V_ATPase_I
MYEOV	26579	genome.wustl.edu	37	11	69063097	69063097	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138768.2	+1	validated	p.F60	0.000	82	0%	156	31.4%	1	0%	-	-	-	NULL
CCND1	595	genome.wustl.edu	37	11	69465892	69465892	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_053056.2	+1	reviewed	p.L244I	1.000	40	0%	70	45.7%	43	37.2%	possibly_damaging(0.952)	deleterious(0.04)	deleterious(0.744)	HMMPfam_Cyclin_C,superfamily_Cyclin-like
ARAP1	116985	genome.wustl.edu	37	11	72409057	72409057	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040118.2	-1	reviewed	p.A879V	0.993	35	0%	62	45.2%	21	23.8%	benign(0.124)	tolerated(0.15)	neutral(0.251)	HMMSmart_SM00233,superfamily_PH domain-like
PGM2L1	283209	genome.wustl.edu	37	11	74082813	74082813	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173582.3	-1	validated	p.G110D	1.000	161	0%	127	40.2%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PGM_PMM_I,superfamily_Phosphoglucomutase first 3 domains
OMP	4975	genome.wustl.edu	37	11	76814045	76814045	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006189.1	+1	reviewed	p.R54C	1.000	38	0%	57	47.4%	0	-	probably_damaging(1)	tolerated(0.1)	deleterious(0.786)	HMMPfam_Olfactory_mark,superfamily_Olfactory_marker
GAB2	9846	genome.wustl.edu	37	11	77991696	77991696	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080491.2	-1	reviewed	p.V109	0.916	200	0%	115	40.9%	1	0%	-	-	-	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
PRCP	5547	genome.wustl.edu	37	11	82595871	82595871	+	Silent	SNP	A	A	G	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199418.2	-1	reviewed	p.T75	0.000	110	0%	138	47.1%	0	-	-	-	-	NULL
C11orf65	160140	genome.wustl.edu	37	11	108263933	108263933	+	Splice_Site	SNP	A	A	G	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152587.3	-1	validated	e6+2	1.000	251	0%	197	44.2%	0	-	-	-	-	-
ZBTB16	7704	genome.wustl.edu	37	11	113934832	113934832	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001018011.1	+1	reviewed	p.D270	1.000	27	0%	48	25%	0	-	-	-	-	NULL
DSCAML1	57453	genome.wustl.edu	37	11	117340692	117340692	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020693.2	-1	provisional	p.P1046	0.997	141	0%	135	17.8%	0	-	-	-	-	HMMPfam_fn3,superfamily_Fibronectin type III
IFT46	56912	genome.wustl.edu	37	11	118416178	118416178	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020153.3	-1	validated	p.R306	1.000	72	0%	81	34.6%	37	51.3%	-	-	-	NULL
VPS11	55823	genome.wustl.edu	37	11	118949542	118949542	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000300793	+1	known	p.Q700*	1.000	66	0%	75	17.3%	26	3.8%	-	-	-	NULL
TBCEL	219899	genome.wustl.edu	37	11	120918257	120918257	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130047.1	+1	validated	p.V52I	1.000	111	0%	62	37.1%	3	66.6%	benign(0.003)	tolerated(0.51)	neutral(0.009)	superfamily_SSF52047
VWA5A	4013	genome.wustl.edu	37	11	124016065	124016065	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130142.1	+1	validated	p.H759R	0.004	122	0%	58	34.5%	15	20%	benign(0.003)	tolerated(0.73)	neutral(0.002)	NULL
OR8G2	26492	genome.wustl.edu	37	11	124096161	124096161	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001007249.1	+1	provisional	p.S255N	0.338	233	0%	245	11%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
TBRG1	84897	genome.wustl.edu	37	11	124494858	124494858	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032811.2	+1	validated	p.R61H	1.000	113	0%	279	43.7%	4	25%	benign(0.065)	tolerated(0.15)	neutral(0.245)	NULL
KCNJ1	3758	genome.wustl.edu	37	11	128709273	128709273	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000220.2	-1	reviewed	p.C308Y	1.000	99	0%	39	25.6%	0	-	probably_damaging(0.965)	deleterious(0)	deleterious(0.851)	HMMPfam_IRK,superfamily_E set domains
PRDM10	56980	genome.wustl.edu	37	11	129780429	129780431	+	In_Frame_Del	DEL	CTG	CTG	-	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	CTG	CTG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020228.2	-1	reviewed	p.Q1039in_frame_del	0.107:0.998:1.000	-	-	-	-	-	-	-	-	-	NULL
NCAPD3	23310	genome.wustl.edu	37	11	134055317	134055317	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015261.2	-1	validated	p.P717H	0.981	195	0%	127	44.1%	9	44.4%	possibly_damaging(0.876)	tolerated(0.07)	deleterious(0.660)	superfamily_ARM-type_fold
LOC678655	678655	genome.wustl.edu	37	12	6560628	6560629	+	RNA	DEL	GT	GT	-	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	GT	GT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_015382.1	-1	predicted	NULL	0.000:0.000	-	-	-	-	-	-	-	-	-	-
CHD4	1108	genome.wustl.edu	37	12	6709724	6709724	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001273.2	-1	reviewed	p.R347*	0.998	97	0%	171	48%	15	13.3%	-	-	-	NULL
GNB3	2784	genome.wustl.edu	37	12	6952957	6952957	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002075.2	+1	reviewed	p.E172K	1.000	198	0%	335	40.6%	2	50%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	superfamily_WD40_like
ATN1	1822	genome.wustl.edu	37	12	7045891	7045891	+	Silent	SNP	A	A	G	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001007026.1	+1	reviewed	p.Q487	0.002	53	0%	102	26.5%	31	22.5%	-	-	-	HMMPfam_Atrophin-1
ASUN	55726	genome.wustl.edu	37	12	27067012	27067014	+	In_Frame_Del	DEL	TCT	TCT	-	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	TCT	TCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018164.2	-1	validated	p.E489in_frame_del	1.000:1.000:0.987	-	-	-	-	-	-	-	-	-	HMMPfam_DUF2151
DNM1L	10059	genome.wustl.edu	37	12	32873730	32873730	+	Splice_Site	SNP	G	G	C	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012062.3	+1	reviewed	e8+1	1.000	93	0%	64	18.8%	0	-	-	-	-	-
ENDOU	8909	genome.wustl.edu	37	12	48110249	48110249	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006025.3	-1	reviewed	p.S154	1.000	225	0%	212	22.6%	0	-	-	-	-	HMMPfam_XendoU
ADCY6	112	genome.wustl.edu	37	12	49168238	49168238	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015270.3	-1	reviewed	p.A744T	0.006	87	0%	109	52.3%	9	11.1%	benign(0.003)	tolerated(0.21)	neutral(0.044)	NULL
NCKAP5L	57701	genome.wustl.edu	37	12	50190318	50190318	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001037806.3	-1	validated	p.G442V	0.607	28	0%	52	36.5%	3	66.6%	probably_damaging(0.961)	tolerated(0.29)	neutral(0.433)	NULL
SMARCD1	6602	genome.wustl.edu	37	12	50484331	50484331	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003076.4	+1	reviewed	p.L364S	1.000	169	0%	249	45.4%	23	47.8%	unknown(0)	tolerated(0.31)	-	HMMPfam_SWIB,superfamily_SWIB/MDM2 domain,HMMSmart_SM00151
EIF4B	1975	genome.wustl.edu	37	12	53412783	53412783	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001417.4	+1	validated	p.G118V	1.000	93	0%	89	21.3%	38	5.2%	probably_damaging(0.958)	deleterious(0.01)	deleterious(0.807)	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928
ANKRD52	283373	genome.wustl.edu	37	12	56637023	56637023	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173595.3	-1	validated	p.T1045M	1.000	37	0%	46	19.6%	3	0%	possibly_damaging(0.948)	tolerated(0.06)	deleterious(0.714)	NULL
NACA	4666	genome.wustl.edu	37	12	57118253	57118253	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001113203.1	-1	validated	p.Q18L	1.000	93	0%	79	30.4%	1499	17.4%	benign(0.06)	tolerated(0.05)	neutral(0.349)	NULL
TMEM194A	23306	genome.wustl.edu	37	12	57472499	57472499	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130963.1	-1	validated	p.S10	0.008	23	0%	25	36%	3	66.6%	-	-	-	NULL
GLI1	2735	genome.wustl.edu	37	12	57863223	57863223	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005269.2	+1	reviewed	p.P440T	1.000	51	0%	82	42.7%	2	0%	benign(0.001)	deleterious(0.05)	neutral(0.345)	NULL
PPM1H	57460	genome.wustl.edu	37	12	63042406	63042406	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020700.1	-1	validated	p.A470S	1.000	117	0%	77	57.1%	31	54.8%	probably_damaging(0.994)	tolerated(0.06)	deleterious(0.774)	HMMSmart_SM00332,superfamily_Protein serine/threonine phosphatase 2C catalytic domain
USP44	84101	genome.wustl.edu	37	12	95927652	95927652	+	Silent	SNP	A	A	G	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042403.1	-1	validated	p.D127	0.996	197	0.5%	179	13.4%	0	-	-	-	-	NULL
NT5DC3	51559	genome.wustl.edu	37	12	104186967	104186967	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031701.2	-1	validated	p.P332S	1.000	99	0%	108	41.7%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_5_nucleotid,superfamily_HAD-like
KIAA1033	23325	genome.wustl.edu	37	12	105527566	105527566	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015275.1	+1	validated	p.Y406	1.000	217	0%	411	49.9%	0	-	-	-	-	NULL
C12orf51	283450	genome.wustl.edu	37	12	112655000	112655000	+	Splice_Site	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001109662.2	-1	validated	e39-1	1.000	21	0%	39	59%	0	-	-	-	-	-
MED13L	23389	genome.wustl.edu	37	12	116399085	116399085	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015335.3	-1	validated	p.M2207L	1.000	105	0%	67	19.4%	25	24%	benign(0.044)	tolerated(0.43)	neutral(0.016)	NULL
WSB2	55884	genome.wustl.edu	37	12	118474162	118474162	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018639.3	-1	reviewed	p.E272K	1.000	60	0%	66	43.9%	40	45%	possibly_damaging(0.875)	tolerated(0.4)	neutral(0.356)	HMMSmart_WD40,superfamily_WD40_like
RAN	5901	genome.wustl.edu	37	12	131360258	131360258	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006325.3	+1	reviewed	p.M179I	1.000	148	0%	234	43.2%	239	42.6%	benign(0)	tolerated(0.11)	neutral(0.272)	HMMSmart_SM00176,superfamily_P-loop containing nucleoside triphosphate hydrolases
EP400	57634	genome.wustl.edu	37	12	132522321	132522321	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015409.3	+1	validated	p.M2015V	1.000	124	0%	180	43.3%	7	28.5%	unknown(0)	-	-	NULL
FAM123A	219287	genome.wustl.edu	37	13	25744778	25744778	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152704.2	-1	validated	p.V327E	0.198	15	0%	42	35.7%	0	-	benign(0.148)	tolerated(0.99)	neutral(0.013)	HMMPfam_WTX
MRPS31	10240	genome.wustl.edu	37	13	41303573	41303573	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005830.3	-1	reviewed	p.W375R	1.000	57	0%	90	13.3%	21	14.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
AKAP11	11215	genome.wustl.edu	37	13	42877508	42877508	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016248.2	+1	reviewed	p.Q1542	1.000	101	0%	48	41.7%	10	60%	-	-	-	NULL
ZC3H13	23091	genome.wustl.edu	37	13	46549808	46549809	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	CT	CT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015070.3	-1	validated	p.R693fs	0.991:0.444	-	-	-	-	-	-	-	-	-	NULL
KPNA3	3839	genome.wustl.edu	37	13	50296619	50296619	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002267.3	-1	reviewed	p.I184V	1.000	74	0%	133	56.4%	11	27.2%	benign(0.169)	tolerated(0.26)	neutral(0.050)	HMMPfam_Arm,HMMSmart_SM00185,superfamily_ARM repeat
SLITRK6	84189	genome.wustl.edu	37	13	86368764	86368764	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032229.2	-1	validated	p.G627V	1.000	166	0%	100	48%	2	50%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	NULL
ABCC4	10257	genome.wustl.edu	37	13	95847149	95847149	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005845.3	-1	reviewed	p.L402	0.000	143	0.7%	168	51.2%	0	-	-	-	-	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
TM9SF2	9375	genome.wustl.edu	37	13	100193882	100193882	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004800.1	+1	provisional	p.L326	0.467	196	0%	185	39.5%	57	47.3%	-	-	-	HMMPfam_EMP70
ATP11A	23250	genome.wustl.edu	37	13	113505507	113505507	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032189.3	+1	reviewed	p.L656F	1.000	94	0%	160	26.9%	1	0%	probably_damaging(0.994)	deleterious(0.01)	deleterious(0.858)	superfamily_HAD-like,superfamily_Metal cation-transporting ATPase ATP-binding domain N,superfamily_Calcium ATPase transmembrane domain M
OR4N2	390429	genome.wustl.edu	37	14	20295870	20295870	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004723.1	+1	provisional	p.A88V	0.922	547	0.2%	475	14.9%	0	-	benign(0)	deleterious(0.02)	neutral(0.383)	HMMPfam_7tm_1,superfamily_SSF81321
PRMT5	10419	genome.wustl.edu	37	14	23393478	23393478	+	Splice_Site	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006109.3	-1	validated	e11+1	1.000	104	0%	95	51.6%	3	100%	-	-	-	-
PCK2	5106	genome.wustl.edu	37	14	24572030	24572030	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004563.2	+1	reviewed	p.D435Y	1.000	88	0%	111	34.2%	22	18.1%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_PEPCK,superfamily_PEP carboxykinase-like
AKAP6	9472	genome.wustl.edu	37	14	33293354	33293354	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004274.4	+1	reviewed	p.Y2112C	1.000	99	0%	53	39.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
YLPM1	56252	genome.wustl.edu	37	14	75245269	75245269	+	Silent	SNP	A	A	G	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019589.2	+1	validated	p.K331	0.995	136	0%	128	16.4%	9	33.3%	-	-	-	NULL
GPR65	8477	genome.wustl.edu	37	14	88477299	88477299	+	Silent	SNP	G	G	C	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003608.3	+1	validated	p.L36	0.012	172	0%	88	39.8%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ZC3H14	79882	genome.wustl.edu	37	14	89039312	89039312	+	Silent	SNP	T	T	C	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024824.4	+1	validated	p.S274	0.778	74	0%	88	21.6%	18	5.5%	-	-	-	NULL
C14orf159	80017	genome.wustl.edu	37	14	91647593	91647593	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001102368.1	+1	validated	p.K265R	0.000	101	0%	92	23.9%	15	13.3%	benign(0.001)	tolerated(0.49)	neutral(0.011)	NULL
SLC24A4	123041	genome.wustl.edu	37	14	92909789	92909789	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153646.2	+1	validated	p.Y193H	1.000	169	0%	106	37.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Na_Ca_ex
ENSG00000216173	0	genome.wustl.edu	37	14	99828698	99828699	+	RNA	DEL	CA	CA	-	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	CA	CA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000401354	+1	novel	NULL	0.002:0.000	-	-	-	-	-	-	-	-	-	-
PPP2R5C	5527	genome.wustl.edu	37	14	102391575	102391575	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002719.3	+1	reviewed	p.R514M	1.000	34	0%	63	27%	15	26.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DYNC1H1	1778	genome.wustl.edu	37	14	102510336	102510336	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001376.4	+1	reviewed	p.R4213Q	1.000	61	0%	60	13.3%	113	15.9%	possibly_damaging(0.476)	tolerated(0.15)	neutral(0.398)	HMMPfam_Dynein_heavy
KIF26A	26153	genome.wustl.edu	37	14	104643650	104643650	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015656.1	+1	validated	p.R1509W	0.064	22	0%	47	17%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
KIAA0284	283638	genome.wustl.edu	37	14	105356002	105356002	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001112726.1	+1	validated	p.R1262Q	0.283	48	0%	82	56.1%	15	46.6%	benign(0.005)	tolerated(0.76)	neutral(0.001)	NULL
ENSG00000215407	0	genome.wustl.edu	37	15	20462603	20462603	+	Missense_Mutation	SNP	G	G	A	rs2880572	byCluster;byFrequency;by2Hit2Allele;byHapMap	TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000400226	-1	known	p.T147M	1.000	40	0%	38	21.1%	0	-	-	-	-	HMMPfam_BRO1
TUBGCP5	114791	genome.wustl.edu	37	15	22863095	22863095	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001102610.1	+1	validated	p.L706F	1.000	180	0%	195	44.1%	3	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Spc97_Spc98
TUBGCP5	114791	genome.wustl.edu	37	15	22864242	22864242	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001102610.1	+1	validated	p.T734A	1.000	148	0%	183	10.9%	5	40%	benign(0.198)	tolerated(0.44)	neutral(0.032)	HMMPfam_Spc97_Spc98
NDN	4692	genome.wustl.edu	37	15	23931620	23931620	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002487.2	-1	reviewed	p.R249C	0.995	18	0%	30	50%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MAGE
C15orf2	23742	genome.wustl.edu	37	15	24921405	24921405	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018958.2	+1	reviewed	p.R131C	0.000	10	0%	45	31.1%	0	-	possibly_damaging(0.598)	deleterious(0.02)	deleterious(0.590)	NULL
OCA2	4948	genome.wustl.edu	37	15	28096615	28096615	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000275.2	-1	reviewed	p.V751M	0.999	45	0%	28	42.9%	1	100%	possibly_damaging(0.935)	deleterious(0.01)	deleterious(0.786)	HMMPfam_CitMHS
PAK6	56924	genome.wustl.edu	37	15	40568282	40568282	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128628.1	+1	reviewed	p.T678I	1.000	64	0%	126	14.3%	25	8%	possibly_damaging(0.452)	deleterious(0.01)	deleterious(0.553)	NULL
VPS18	57617	genome.wustl.edu	37	15	41192193	41192193	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020857.2	+1	reviewed	p.R393W	1.000	33	0%	48	20.8%	14	7.1%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_Pep3_Vps18
TMEM87A	25963	genome.wustl.edu	37	15	42520966	42520966	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015497.3	-1	validated	p.I395T	1.000	178	0%	152	19.1%	34	17.6%	benign(0)	tolerated(0.25)	neutral(0.037)	HMMPfam_Lung_7-TM_R
STARD9	57519	genome.wustl.edu	37	15	42985815	42985815	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001129482.3	+1	model	p.S3927	0.020	52	0%	30	63.3%	0	-	-	-	-	NULL
TGM5	9333	genome.wustl.edu	37	15	43544974	43544974	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_201631.3	-1	reviewed	p.A282V	1.000	51	0%	44	34.1%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Transglut_core,HMMSmart_SM00460,PatternScan_TRANSGLUTAMINASES,superfamily_Cysteine proteinases
TGM5	9333	genome.wustl.edu	37	15	43545052	43545052	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_201631.3	-1	reviewed	p.T256M	0.031	58	0%	50	42%	4	50%	benign(0.028)	tolerated(0.14)	neutral(0.251)	superfamily_Cysteine proteinases
TMOD2	29767	genome.wustl.edu	37	15	52066008	52066008	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014548.3	+1	reviewed	p.D128G	1.000	118	0%	76	22.4%	1	100%	possibly_damaging(0.52)	deleterious(0)	deleterious(0.619)	HMMPfam_Tropomodulin
IGDCC3	9543	genome.wustl.edu	37	15	65623542	65623542	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004884.3	-1	validated	p.E469	1.000	44	0%	100	34%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
NEO1	4756	genome.wustl.edu	37	15	73562474	73562474	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002499.3	+1	validated	p.T873M	0.998	119	0%	71	39.4%	13	61.5%	probably_damaging(0.996)	tolerated(0.2)	deleterious(0.511)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
STOML1	9399	genome.wustl.edu	37	15	74277673	74277673	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004809.3	-1	provisional	p.P259L	0.000	18	0%	32	40.6%	10	20%	benign(0.347)	deleterious(0.01)	deleterious(0.516)	NULL
FBXO22	26263	genome.wustl.edu	37	15	76225330	76225330	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_147188.1	+1	reviewed	p.R367W	1.000	300	0%	284	42.6%	10	20%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
IL16	3603	genome.wustl.edu	37	15	81517983	81517983	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_172217.3	+1	reviewed	p.S81	0.009	58	0%	19	52.6%	0	-	-	-	-	NULL
AGBL1	123624	genome.wustl.edu	37	15	86822924	86822924	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152336.2	+1	validated	p.Y664*	0.813	195	0%	117	47.9%	0	-	-	-	-	NULL
HAPLN3	145864	genome.wustl.edu	37	15	89430462	89430462	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178232.2	-1	reviewed	p.G23D	1.000	148	0%	188	43.6%	15	53.3%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
FAM149B2	100113400	genome.wustl.edu	37	15	97301301	97301301	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000398303	+1	known	p.P201H	0.361	121	0%	240	17.1%	0	-	-	-	-	NULL
TM2D3	80213	genome.wustl.edu	37	15	102186948	102186948	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_078474.2	-1	reviewed	p.R161Q	1.000	90	0%	128	48.4%	71	40.8%	possibly_damaging(0.833)	tolerated(0.35)	neutral(0.338)	NULL
PIGQ	9091	genome.wustl.edu	37	16	630240	630240	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_148920.1	+1	reviewed	p.L465M	1.000	237	0%	369	13.3%	28	14.2%	probably_damaging(0.999)	tolerated(0.06)	deleterious(0.813)	NULL
UBE2I	7329	genome.wustl.edu	37	16	1370636	1370636	+	Silent	SNP	C	C	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000402301	+1	known	p.L177	0.000	18	0%	24	45.8%	0	-	-	-	-	NULL
MSRB1	51734	genome.wustl.edu	37	16	1990901	1990901	+	Silent	SNP	G	G	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000399753	-1	known	p.I187	0.001	40	0%	71	23.9%	0	-	-	-	-	NULL
E4F1	1877	genome.wustl.edu	37	16	2285339	2285339	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004424.3	+1	reviewed	p.A707	0.000	9	0.000	10	0.600	42	42.8%	-	-	-	NULL
THOC6	79228	genome.wustl.edu	37	16	3077461	3077461	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024339.3	+1	validated	p.S302N	0.995	39	0%	56	21.4%	80	16.2%	possibly_damaging(0.944)	deleterious(0.01)	deleterious(0.794)	superfamily_WD40 repeat-like
ROGDI	79641	genome.wustl.edu	37	16	4848631	4848631	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024589.1	-1	provisional	p.R157Q	1.000	57	0%	108	23.1%	32	15.6%	probably_damaging(1)	tolerated(0.13)	deleterious(0.752)	HMMPfam_Rogdi_lz
ACSM3	6296	genome.wustl.edu	37	16	20803422	20803422	+	Silent	SNP	A	A	G	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005622.3	+1	validated	p.A475	1.000	368	0%	254	26%	35	28.5%	-	-	-	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like
EEF2K	29904	genome.wustl.edu	37	16	22291547	22291547	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013302.3	+1	reviewed	p.W640R	1.000	127	0%	52	9.6%	11	9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF81901
RRN3P2	653390	genome.wustl.edu	37	16	29110458	29110458	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000427965	+1	known	p.W375R	0.991	45	2.2%	113	42.5%	0	-	benign(0)	tolerated(1)	-	HMMPfam_RRN3
ZNF48	197407	genome.wustl.edu	37	16	30409830	30409830	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152652.1	+1	provisional	p.S420L	0.186	10	0%	30	40%	18	55.5%	possibly_damaging(0.883)	deleterious(0.01)	deleterious(0.750)	NULL
KAT8	84148	genome.wustl.edu	37	16	31141378	31141378	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182958.2	+1	validated	p.L271Q	1.000	93	0%	185	42.2%	58	31%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MOZ_SAS,superfamily_Acyl-CoA N-acyltransferases (Nat)
ENSG00000198555	0	genome.wustl.edu	37	16	33784703	33784703	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000359871	+1	known	p.N496S	0.989	62	0%	118	18.6%	0	-	benign(0.29)	tolerated(0.07)	neutral(0.408)	HMMPfam_SNF
ABCC12	94160	genome.wustl.edu	37	16	48138090	48138090	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033226.2	-1	reviewed	p.V955M	0.606	162	0%	132	40.9%	0	-	possibly_damaging(0.539)	tolerated(0.05)	deleterious(0.528)	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
TOX3	27324	genome.wustl.edu	37	16	52484431	52484431	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080430.2	-1	reviewed	p.Y146H	1.000	131	0%	58	39.7%	9	44.4%	possibly_damaging(0.485)	deleterious(0.01)	deleterious(0.567)	NULL
CDH11	1009	genome.wustl.edu	37	16	64981772	64981772	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001797.2	-1	reviewed	p.R709W	0.957	131	0%	126	38.1%	5	0%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Cadherin_C
LRRC29	26231	genome.wustl.edu	37	16	67244007	67244007	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004055.1	-1	reviewed	p.H29Y	0.000	29	0%	43	18.6%	3	0%	benign(0.202)	tolerated(0.07)	neutral(0.339)	superfamily_RNI-like
CTCF	10664	genome.wustl.edu	37	16	67646007	67646007	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006565.2	+1	reviewed	p.H312R	1.000	78	0%	53	34%	33	39.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
C16orf86	388284	genome.wustl.edu	37	16	67701400	67701400	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001012984.2	+1	validated	p.R102C	0.797	10	0%	27	40.7%	2	0%	benign(0.393)	tolerated(0.09)	neutral(0.422)	NULL
NFAT5	10725	genome.wustl.edu	37	16	69726422	69726422	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138713.2	+1	reviewed	p.Q898	0.988	81	0%	61	36.1%	1	0%	-	-	-	NULL
VAT1L	57687	genome.wustl.edu	37	16	77910274	77910274	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020927.1	+1	provisional	p.A244T	0.999	267	0%	234	37.2%	0	-	benign(0)	tolerated(0.08)	neutral(0.300)	HMMPfam_ADH_zinc_N,superfamily_NAD(P)-bd
KIAA0182	23199	genome.wustl.edu	37	16	85694951	85694951	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014615.2	+1	validated	p.P614T	1.000	10	0.000	7	0.714	9	55.5%	possibly_damaging(0.811)	tolerated(0.15)	deleterious(0.546)	NULL
FBXO31	79791	genome.wustl.edu	37	16	87365085	87365085	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024735.3	-1	validated	p.G477S	1.000	45	0%	57	54.4%	11	54.5%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
SLC7A5	8140	genome.wustl.edu	37	16	87873425	87873425	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003486.5	-1	validated	p.L274	1.000	83	0%	184	38.6%	7	0%	-	-	-	HMMPfam_AA_permease
ANKRD11	29123	genome.wustl.edu	37	16	89337295	89337295	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013275.4	-1	validated	p.R2579H	0.994	67	0%	95	41.1%	18	38.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SPG7	6687	genome.wustl.edu	37	16	89590264	89590264	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000312632	+1	known	p.N54	0.001	20	0%	26	57.7%	6	33.3%	-	-	-	NULL
GEMIN4	50628	genome.wustl.edu	37	17	648294	648296	+	In_Frame_Del	DEL	CCT	CCT	-	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	CCT	CCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015721.2	-1	reviewed	p.E996in_frame_del	1.000:1.000:0.997	-	-	-	-	-	-	-	-	-	NULL
SLC43A2	124935	genome.wustl.edu	37	17	1520058	1520058	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152346.1	-1	provisional	p.V56I	0.440	60	0%	71	60.6%	5	0%	benign(0)	tolerated(0.43)	neutral(0.013)	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
MNT	4335	genome.wustl.edu	37	17	2298309	2298309	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020310.2	-1	reviewed	p.T171	0.823	29	0%	90	11.1%	1	0%	-	-	-	NULL
ATP2A3	489	genome.wustl.edu	37	17	3853989	3853989	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_174953.1	-1	reviewed	p.T181M	1.000	83	0%	177	38.4%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A,superfamily_Calcium ATPase transmembrane domain M
USP6	9098	genome.wustl.edu	37	17	5073780	5073782	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	CTT	CTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004505.2	+1	validated	p.S1178in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_UCH,superfamily_Cysteine proteinases
DNAH2	146754	genome.wustl.edu	37	17	7719940	7719940	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020877.2	+1	validated	p.Q3261*	0.995	150	0%	145	41.4%	0	-	-	-	-	NULL
CTC1	80169	genome.wustl.edu	37	17	8138577	8138577	+	Silent	SNP	T	T	C	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025099.5	-1	validated	p.S411	0.557	28	0%	29	17.2%	9	77.7%	-	-	-	NULL
MYH3	4621	genome.wustl.edu	37	17	10551927	10551927	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002470.2	-1	reviewed	p.L228	1.000	204	0%	156	39.7%	1	0%	-	-	-	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
PMP22	5376	genome.wustl.edu	37	17	15134375	15134375	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000304.2	-1	reviewed	p.A114	0.073	33	0%	25	44%	6	0%	-	-	-	HMMPfam_PMP22_Claudin
FLCN	201163	genome.wustl.edu	37	17	17125821	17125821	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144997.5	-1	reviewed	p.F258S	1.000	104	0%	164	14%	14	7.1%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
TOP3A	7156	genome.wustl.edu	37	17	18181143	18181143	+	Silent	SNP	A	A	G	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004618.3	-1	reviewed	p.S891	0.000	42	0%	34	11.8%	12	33.3%	-	-	-	NULL
FAM83G	644815	genome.wustl.edu	37	17	18874804	18874804	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039999.2	-1	validated	p.P780	0.000	80	0%	137	40.1%	6	50%	-	-	-	NULL
LGALS9	3965	genome.wustl.edu	37	17	25972346	25972346	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_009587.2	+1	reviewed	p.G183S	0.001	682	0%	797	22.8%	22	18.1%	benign(0.052)	tolerated(0.08)	neutral(0.303)	NULL
SUPT6H	6830	genome.wustl.edu	37	17	27011678	27011678	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003170.3	+1	validated	p.D768	0.988	225	0.4%	159	43.4%	17	29.4%	-	-	-	NULL
ASIC2	40	genome.wustl.edu	37	17	31341017	31341017	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_183377.1	-1	reviewed	p.T553M	1.000	232	0%	258	44.6%	0	-	probably_damaging(0.973)	deleterious(0.03)	deleterious(0.779)	NULL
STAC2	342667	genome.wustl.edu	37	17	37371448	37371448	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198993.3	-1	validated	p.L208M	1.000	156	0%	217	44.7%	11	36.3%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
CDK12	51755	genome.wustl.edu	37	17	37682432	37682433	+	Frame_Shift_Del	DEL	AT	AT	-	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	AT	AT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016507.2	+1	validated	p.L1210fs	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
CASC3	22794	genome.wustl.edu	37	17	38320408	38320408	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007359.4	+1	reviewed	p.R487L	0.981	39	0%	29	41.4%	23	39.1%	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	NULL
TUBG1	7283	genome.wustl.edu	37	17	40765676	40765676	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001070.4	+1	reviewed	p.D206	1.000	203	0%	306	40.2%	109	38.5%	-	-	-	HMMPfam_Tubulin,superfamily_Tubulin nucleotide-binding domain-like
DUSP3	1845	genome.wustl.edu	37	17	41847097	41847097	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004090.3	-1	reviewed	p.D146	0.271	116	0%	82	50%	20	50%	-	-	-	HMMPfam_DSPc,HMMSmart_SM00195,superfamily_(Phosphotyrosine protein) phosphatases II
HDAC5	10014	genome.wustl.edu	37	17	42170788	42170788	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001015053.1	-1	reviewed	p.E141	1.000	13	0%	32	28.1%	10	10%	-	-	-	NULL
KIF18B	146909	genome.wustl.edu	37	17	43011339	43011339	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080443.1	-1	provisional	p.T338	0.028	178	0.6%	193	13.5%	2	0%	-	-	-	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
LRRC59	55379	genome.wustl.edu	37	17	48462638	48462638	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018509.3	-1	validated	p.R173C	1.000	139	0%	161	44.1%	65	47.6%	possibly_damaging(0.693)	tolerated(0.09)	deleterious(0.544)	NULL
TOM1L1	10040	genome.wustl.edu	37	17	53026968	53026968	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005486.2	+1	validated	p.L424	0.927	184	0%	127	48.8%	104	40.3%	-	-	-	NULL
CUEDC1	404093	genome.wustl.edu	37	17	55962774	55962774	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017949.1	-1	provisional	p.M51T	1.000	20	0%	19	31.6%	18	50%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_CUE,HMMSmart_SM00546,superfamily_UBA-like
EPX	8288	genome.wustl.edu	37	17	56270882	56270882	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000502.4	+1	reviewed	p.Q107	0.000	82	0%	110	40.9%	0	-	-	-	-	NULL
GDPD1	284161	genome.wustl.edu	37	17	57350178	57350178	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182569.3	+1	validated	p.L268P	1.000	293	0%	311	35.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_GDPD,superfamily_PLC-like phosphodiesterases
CLTC	1213	genome.wustl.edu	37	17	57760478	57760478	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004859.3	+1	reviewed	p.L1299P	1.000	159	0%	84	36.9%	103	27.1%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Clathrin,HMMSmart_SM00299,superfamily_ARM repeat
TBX4	9496	genome.wustl.edu	37	17	59534942	59534944	+	In_Frame_Del	DEL	GAA	GAA	-	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	GAA	GAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018488.2	+1	reviewed	p.K79in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_T-box,HMMSmart_TBOX,superfamily_P53_like_DNA_bnd,PatternScan_TBOX_1
MRC2	9902	genome.wustl.edu	37	17	60767290	60767290	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006039.3	+1	validated	p.P1203	0.006	16	0%	27	55.6%	3	33.3%	-	-	-	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like
TANC2	26115	genome.wustl.edu	37	17	61498755	61498755	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025185.3	+1	validated	p.S1804	0.002	91	0%	127	37.8%	0	-	-	-	-	NULL
CCDC47	57003	genome.wustl.edu	37	17	61833606	61833606	+	Silent	SNP	A	A	G	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020198.2	-1	validated	p.D314	1.000	165	0%	127	43.3%	58	50%	-	-	-	HMMPfam_DUF1682
SDK2	54549	genome.wustl.edu	37	17	71431726	71431726	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144952.1	-1	provisional	p.K353R	0.996	55	0%	47	55.3%	0	-	benign(0)	tolerated(0.59)	neutral(0.004)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
SLC16A5	9121	genome.wustl.edu	37	17	73102082	73102082	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004695.2	+1	provisional	p.V491A	0.022	59	0%	62	41.9%	10	20%	unknown(0)	-	-	NULL
UNK	85451	genome.wustl.edu	37	17	73814743	73814743	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080419.1	+1	provisional	p.P540	0.719	130	0%	224	43.8%	14	57.1%	-	-	-	NULL
FBF1	85302	genome.wustl.edu	37	17	73914245	73914245	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080542.1	-1	provisional	p.T733	0.004	72	0%	89	41.6%	4	50%	-	-	-	NULL
CARD14	79092	genome.wustl.edu	37	17	78166360	78166360	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024110.2	+1	reviewed	p.R433L	0.799	38	0%	32	46.9%	3	33.3%	probably_damaging(1)	tolerated(0.27)	deleterious(0.533)	NULL
SLC26A11	284129	genome.wustl.edu	37	17	78195577	78195577	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173626.3	+1	reviewed	p.A73D	1.000	21	0%	52	42.3%	2	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
BAHCC1	57597	genome.wustl.edu	37	17	79411842	79411842	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080519.2	+1	inferred	p.P832S	1.000	59	0%	108	49.1%	1	100%	-	-	-	NULL
BAHCC1	57597	genome.wustl.edu	37	17	79428758	79428758	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080519.2	+1	inferred	p.A2301V	0.999	12	0%	21	57.1%	15	26.6%	-	-	-	NULL
GCGR	2642	genome.wustl.edu	37	17	79769574	79769574	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000400723	+1	known	p.I235	0.197	86	0%	88	21.6%	2	0%	-	-	-	HMMPfam_7tm_2,superfamily_SSF81321
NARF	26502	genome.wustl.edu	37	17	80443395	80443395	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012336.3	+1	reviewed	p.T332A	0.999	99	0%	154	42.2%	110	51.8%	benign(0.212)	tolerated(0.12)	neutral(0.281)	HMMPfam_Fe_hyd_lg_C,superfamily_Fe-only hydrogenase
COLEC12	81035	genome.wustl.edu	37	18	335166	335166	+	Silent	SNP	G	G	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_130386.2	-1	validated	p.G464	0.881	9	0.000	15	0.600	1	100%	-	-	-	NULL
SOGA2	23255	genome.wustl.edu	37	18	8819197	8819197	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015210.3	+1	predicted	p.D1032	0.104	44	0%	38	34.2%	0	-	-	-	-	NULL
SLC35G4	646000	genome.wustl.edu	37	18	11644377	11644377	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000424015	+1	known	p.A190T	0.147	57	0%	87	23%	0	-	-	-	-	NULL
DTNA	1837	genome.wustl.edu	37	18	32391970	32391970	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001390.4	+1	reviewed	p.R166*	0.943	167	0%	78	32.1%	0	-	-	-	-	HMMPfam_efhand_2,superfamily_EF-hand
CCDC11	220136	genome.wustl.edu	37	18	47778081	47778081	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145020.3	-1	validated	p.Q183fs	1.000	-	-	-	-	-	-	-	-	-	NULL
DCC	1630	genome.wustl.edu	37	18	50731695	50731695	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005215.3	+1	reviewed	p.Y561	1.000	139	0%	91	36.3%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
TCF4	6925	genome.wustl.edu	37	18	52896248	52896248	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001083962.1	-1	reviewed	p.R570M	1.000	147	0%	76	17.1%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HLH,superfamily_HLH_basic
ONECUT2	9480	genome.wustl.edu	37	18	55103932	55103932	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004852.2	+1	reviewed	p.G328	0.915	36	0%	40	47.5%	0	-	-	-	-	HMMPfam_CUT
TMX3	54495	genome.wustl.edu	37	18	66350220	66350220	+	Splice_Site	SNP	T	T	C	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019022.3	-1	validated	e13-2	0.998	178	0%	177	13%	0	-	-	-	-	-
ZNF236	7776	genome.wustl.edu	37	18	74607235	74607235	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007345.3	+1	validated	p.H560Y	1.000	30	0%	20	45%	1	0%	probably_damaging(0.996)	deleterious(0.02)	deleterious(0.845)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
NFATC1	4772	genome.wustl.edu	37	18	77193714	77193714	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_172387.1	+1	reviewed	p.S441	0.000	27	0%	39	15.4%	4	0%	-	-	-	superfamily_p53-like transcription factors,HMMPfam_RHD
POLRMT	5442	genome.wustl.edu	37	19	619741	619741	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005035.3	-1	reviewed	p.A971T	1.000	52	0%	61	32.8%	35	45.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RNA_pol,superfamily_SSF56672
ABCA7	10347	genome.wustl.edu	37	19	1055305	1055305	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019112.3	+1	reviewed	p.L1387P	1.000	8	0.000	12	0.500	0	-	possibly_damaging(0.609)	deleterious(0)	deleterious(0.655)	NULL
ABCA7	10347	genome.wustl.edu	37	19	1056334	1056334	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019112.3	+1	reviewed	p.W1474*	1.000	133	0%	197	12.2%	3	0%	-	-	-	NULL
GPX4	2879	genome.wustl.edu	37	19	1105758	1105758	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039848.1	+1	reviewed	p.P179	0.380	52	0%	105	41%	888	44.2%	-	-	-	HMMPfam_GSHPx,superfamily_Thioredoxin-like
ANKRD24	170961	genome.wustl.edu	37	19	4216856	4216856	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133475.1	+1	provisional	p.A567T	0.000	29	3.4%	56	37.5%	3	66.6%	benign(0.008)	tolerated(0.15)	neutral(0.241)	NULL
DPP9	91039	genome.wustl.edu	37	19	4676657	4676658	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139159.4	-1	reviewed	p.N866fs	0.914:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_Peptidase_S9,superfamily_SSF53474
PRR22	163154	genome.wustl.edu	37	19	5783262	5783262	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134316.1	-1	validated	p.P332	0.003	15	0%	35	17.1%	19	5.2%	-	-	-	NULL
INSR	3643	genome.wustl.edu	37	19	7132248	7132248	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000208.2	-1	reviewed	p.Y921	1.000	63	0%	51	51%	8	12.5%	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
MYO1F	4542	genome.wustl.edu	37	19	8609298	8609298	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012335.3	-1	validated	p.H469	0.993	29	0%	40	47.5%	1	100%	-	-	-	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
MUC16	94025	genome.wustl.edu	37	19	9017437	9017437	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024690.2	-1	validated	p.R12629S	0.000	419	0%	191	27.7%	0	-	probably_damaging(0.989)	-	-	HMMPfam_SEA,superfamily_SEA domain
RDH8	50700	genome.wustl.edu	37	19	10127741	10127741	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015725.2	+1	validated	p.T38A	1.000	70	0%	105	38.1%	0	-	possibly_damaging(0.91)	deleterious(0)	deleterious(0.807)	HMMPfam_adh_short,superfamily_NAD(P)-bd
RAVER1	125950	genome.wustl.edu	37	19	10433411	10433411	+	Silent	SNP	G	G	C	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133452.2	-1	validated	p.L378	1.000	38	0%	78	50%	53	45.2%	-	-	-	NULL
DOCK6	57572	genome.wustl.edu	37	19	11323976	11323976	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020812.2	-1	validated	p.T1456M	1.000	31	3.2%	56	42.9%	6	33.3%	probably_damaging(0.983)	deleterious(0.04)	deleterious(0.778)	NULL
ZNF440	126070	genome.wustl.edu	37	19	11943099	11943099	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152357.2	+1	validated	p.C370R	0.422	86	0%	116	27.6%	6	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
KLF1	10661	genome.wustl.edu	37	19	12995838	12995838	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006563.3	-1	reviewed	p.G317V	1.000	42	0%	54	16.7%	0	-	probably_damaging(0.99)	deleterious(0.02)	deleterious(0.825)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
SYCE2	256126	genome.wustl.edu	37	19	13011305	13011305	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105578.1	-1	validated	p.T155I	0.498	136	0%	199	45.2%	2	50%	probably_damaging(0.999)	tolerated(0.26)	deleterious(0.524)	NULL
RFX1	5989	genome.wustl.edu	37	19	14076525	14076525	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002918.4	-1	validated	p.V676M	0.931	101	0%	150	41.3%	12	50%	possibly_damaging(0.646)	deleterious(0.02)	deleterious(0.610)	NULL
CPAMD8	27151	genome.wustl.edu	37	19	17056434	17056434	+	Silent	SNP	T	T	C	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000443236	-1	known	p.N964S	0.044	156	0%	96	40.6%	0	-	-	-	-	NULL
MYO9B	4650	genome.wustl.edu	37	19	17273273	17273273	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004145.3	+1	reviewed	p.V511	0.989	45	0%	43	9.3%	5	20%	-	-	-	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
CRLF1	9244	genome.wustl.edu	37	19	18709684	18709684	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004750.4	-1	reviewed	p.S142N	1.000	111	0%	198	41.9%	0	-	benign(0.27)	deleterious(0.01)	neutral(0.435)	HMMSmart_FN3,superfamily_FN_III-like,HMMPfam_EpoR_lig-bind
RFXANK	8625	genome.wustl.edu	37	19	19308390	19308390	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003721.2	+1	reviewed	p.A133G	0.998	24	0%	38	47.4%	80	43.7%	probably_damaging(0.999)	tolerated(0.06)	deleterious(0.813)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
SUGP1	57794	genome.wustl.edu	37	19	19390032	19390032	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_172231.2	-1	validated	p.D506E	1.000	64	0%	77	28.6%	45	15.5%	benign(0.075)	tolerated(1)	neutral(0.005)	NULL
ZNF431	170959	genome.wustl.edu	37	19	21366640	21366640	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133473.2	+1	validated	p.Y512H	0.140	93	0%	126	32.5%	2	50%	possibly_damaging(0.464)	deleterious(0.02)	deleterious(0.535)	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
LOC646864	646864	genome.wustl.edu	37	19	23039923	23039923	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001726885.1	+1	model	p.V106A	0.539	28	0%	84	47.6%	0	-	-	-	-	NULL
TSHZ3	57616	genome.wustl.edu	37	19	31768041	31768041	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020856.2	-1	validated	p.T886	0.197	57	0%	48	50%	3	0%	-	-	-	superfamily_Homeodomain_like
KIAA0355	9710	genome.wustl.edu	37	19	34838839	34838839	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014686.3	+1	validated	p.Q860R	1.000	33	0%	61	14.8%	3	0%	benign(0.134)	deleterious(0)	neutral(0.456)	NULL
KIAA0355	9710	genome.wustl.edu	37	19	34839996	34839996	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014686.3	+1	validated	p.N921	0.071	81	0%	144	48.6%	12	41.6%	-	-	-	NULL
UBA2	10054	genome.wustl.edu	37	19	34919391	34919391	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005499.2	+1	validated	p.G18	1.000	3	0.000	15	0.467	6	33.3%	-	-	-	HMMPfam_ThiF,superfamily_MoeB
FXYD3	5349	genome.wustl.edu	37	19	35612132	35612132	+	Missense_Mutation	SNP	A	A	T	rs117868611	byFrequency;by1000genomes	TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136007.1	+1	reviewed	p.N84I	0.999	155	0%	261	21.1%	375	9.3%	possibly_damaging(0.907)	deleterious(0)	deleterious(0.805)	HMMPfam_ATP1G1_PLM_MAT8
MLL4	9757	genome.wustl.edu	37	19	36210721	36210722	+	Frame_Shift_Ins	INS	-	-	CGAC	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014727.1	+1	reviewed	p.P160fs	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
MLL4	9757	genome.wustl.edu	37	19	36213980	36213980	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014727.1	+1	reviewed	p.S936P	0.981	37	0%	71	35.2%	3	33.3%	possibly_damaging(0.727)	-	-	NULL
U2AF1L4	199746	genome.wustl.edu	37	19	36234588	36234591	+	Frame_Shift_Del	DEL	AAAA	AAAA	-	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	AAAA	AAAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000392196	-1	known	p.F113fs	0.001:0.001:0.000:0.000	-	-	-	-	-	-	-	-	-	NULL
KIRREL2	84063	genome.wustl.edu	37	19	36352819	36352819	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199180.2	+1	validated	p.V468A	1.000	95	0%	168	11.3%	0	-	possibly_damaging(0.577)	tolerated(0.05)	deleterious(0.543)	HMMSmart_SM00409,superfamily_Immunoglobulin
WDR62	284403	genome.wustl.edu	37	19	36592647	36592647	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001083961.1	+1	validated	p.R1018Q	0.000	26	0%	33	54.5%	6	16.6%	benign(0.005)	tolerated(0.59)	neutral(0.004)	NULL
WDR87	83889	genome.wustl.edu	37	19	38385088	38385088	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031951.3	-1	provisional	p.P380T	0.970	85	0%	49	16.3%	0	-	possibly_damaging(0.618)	-	-	superfamily_WD40 repeat-like
SIPA1L3	23094	genome.wustl.edu	37	19	38655539	38655539	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015073.1	+1	validated	p.Q1401*	0.979	7	0.000	10	0.400	12	16.6%	-	-	-	NULL
RYR1	6261	genome.wustl.edu	37	19	38993282	38993282	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000540.2	+1	reviewed	p.H2584Y	1.000	41	0%	58	32.8%	1	0%	possibly_damaging(0.947)	-	-	NULL
PLEKHG2	64857	genome.wustl.edu	37	19	39914802	39914802	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022835.2	+1	validated	p.H1010R	0.000	133	0%	255	15.3%	13	15.3%	benign(0.056)	deleterious(0)	neutral(0.448)	NULL
SUPT5H	6829	genome.wustl.edu	37	19	39950569	39950569	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001111020.2	+1	validated	p.R198H	1.000	170	0%	115	54.8%	44	52.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00738
HIPK4	147746	genome.wustl.edu	37	19	40885494	40885494	+	Nonstop_Mutation	SNP	T	T	C	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144685.3	-1	provisional	p.*617W	0.986	86	0%	114	45.6%	0	-	-	-	-	NULL
ARHGEF1	9138	genome.wustl.edu	37	19	42396732	42396732	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199002.1	+1	reviewed	p.V157	1.000	31	0%	53	22.6%	29	10.3%	-	-	-	HMMPfam_RGS-like,superfamily_Regulat_G_prot_signal_superfam
ZNF223	7766	genome.wustl.edu	37	19	44571308	44571308	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013361.4	+1	validated	p.R443C	0.123	81	0%	83	44.6%	1	0%	benign(0.004)	tolerated(0.07)	neutral(0.319)	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
RELB	5971	genome.wustl.edu	37	19	45535973	45535973	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006509.2	+1	validated	p.E391	1.000	64	0%	86	44.2%	30	33.3%	-	-	-	HMMPfam_TIG,HMMSmart_IPT,superfamily_Ig_E-set
ERCC1	2067	genome.wustl.edu	37	19	45924540	45924540	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_202001.2	-1	reviewed	p.G73R	0.499	99	0%	171	36.3%	108	25.9%	benign(0.299)	tolerated(0.53)	neutral(0.100)	NULL
DMPK	1760	genome.wustl.edu	37	19	46280645	46280645	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001081563.1	-1	reviewed	p.T372	0.001	19	0%	30	36.7%	12	41.6%	-	-	-	HMMSmart_SM00133,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_C
ARHGAP35	2909	genome.wustl.edu	37	19	47421991	47421991	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004491.4	+1	reviewed	p.G20V	1.000	193	0%	91	50.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
LOC100287338	100287338	genome.wustl.edu	37	19	47844752	47844752	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343689.1	-1	model	p.P84S	0.002	34	0%	78	19.2%	2	0%	-	-	-	NULL
LMTK3	114783	genome.wustl.edu	37	19	49001863	49001863	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080434.1	-1	provisional	p.P850	0.166	6	0.000	9	0.444	7	57.1%	-	-	-	HMMSmart_SM00220
RPL18	6141	genome.wustl.edu	37	19	49119901	49119905	+	Frame_Shift_Del	DEL	CAGCA	CAGCA	-	rs111332848		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	CAGCA	CAGCA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000450952	-1	known	p.V125fs	0.000:0.000:0.000:0.000:0.000	-	-	-	-	-	-	-	-	-	NULL
NTN5	126147	genome.wustl.edu	37	19	49167915	49167915	+	Silent	SNP	A	A	C	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145807.1	-1	provisional	p.A247	0.003	36	0%	53	34%	2	50%	-	-	-	HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1,superfamily_EGF/Laminin
PNKP	11284	genome.wustl.edu	37	19	50368485	50368485	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007254.2	-1	provisional	p.A133T	0.000	132	0%	230	15.7%	38	18.4%	benign(0)	tolerated(0.77)	neutral(0.001)	NULL
IL4I1	259307	genome.wustl.edu	37	19	50399128	50399129	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_172374.1	-1	reviewed	p.G87fs	0.951:0.092	-	-	-	-	-	-	-	-	-	superfamily_FAD/NAD(P)-binding domain
POLD1	5424	genome.wustl.edu	37	19	50912867	50912867	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002691.2	+1	validated	p.V700I	1.000	26	0%	33	45.5%	14	64.2%	probably_damaging(0.973)	deleterious(0)	deleterious(0.859)	HMMPfam_DNA_pol_B,HMMSmart_POLBc,superfamily_SSF56672
KLK13	26085	genome.wustl.edu	37	19	51563739	51563739	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015596.1	-1	reviewed	p.V64I	0.908	68	0%	116	35.3%	1	0%	benign(0.037)	tolerated(0.39)	neutral(0.018)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
SIGLEC6	946	genome.wustl.edu	37	19	52034449	52034449	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001245.5	-1	validated	p.G131D	0.000	85	0%	84	15.5%	0	-	benign(0.045)	tolerated(0.06)	neutral(0.325)	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
LILRA2	11027	genome.wustl.edu	37	19	55086388	55086388	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130917.1	+1	validated	p.S181	0.000	302	0%	247	43.3%	0	-	-	-	-	HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
PPP6R1	22870	genome.wustl.edu	37	19	55751640	55751640	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014931.3	-1	validated	p.R442Q	1.000	33	0%	31	48.4%	43	30.2%	probably_damaging(0.997)	deleterious(0.02)	deleterious(0.849)	HMMPfam_SAPS
NLRP9	338321	genome.wustl.edu	37	19	56244663	56244663	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_176820.2	-1	reviewed	p.R178S	0.289	58	0%	69	40.6%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_NACHT
ZSCAN18	65982	genome.wustl.edu	37	19	58601414	58601414	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145542.1	-1	validated	p.C130Y	0.999	40	0%	65	15.4%	10	20%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	HMMPfam_SCAN,HMMSmart_SCAN
DEFB127	140850	genome.wustl.edu	37	20	139430	139430	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139074.2	+1	reviewed	p.K22R	0.354	58	0%	54	51.9%	0	-	probably_damaging(0.981)	tolerated(0.3)	neutral(0.454)	NULL
C20orf96	140680	genome.wustl.edu	37	20	270291	270291	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153269.1	-1	predicted	p.K32	0.000	129	0%	196	13.8%	10	20%	-	-	-	NULL
ANGPT4	51378	genome.wustl.edu	37	20	896836	896836	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015985.2	-1	reviewed	p.L8	0.996	69	0%	44	43.2%	0	-	-	-	-	NULL
TRMT6	51605	genome.wustl.edu	37	20	5924294	5924294	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015939.3	-1	reviewed	p.T193M	1.000	227	0%	222	45.9%	9	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Gcd10p
JAG1	182	genome.wustl.edu	37	20	10620443	10620444	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000214.2	-1	reviewed	p.N1120fs	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
CRNKL1	51340	genome.wustl.edu	37	20	20018054	20018056	+	In_Frame_Del	DEL	TTC	TTC	-	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	TTC	TTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016652.4	-1	reviewed	p.E764in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
DNMT3B	1789	genome.wustl.edu	37	20	31386307	31386307	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006892.3	+1	reviewed	p.G511D	1.000	64	0%	33	30.3%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_FYVE/PHD zinc finger
GDF5	8200	genome.wustl.edu	37	20	34022473	34022473	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000557.2	-1	reviewed	p.S247L	0.069	21	0%	30	46.7%	1	100%	benign(0.044)	tolerated(0.34)	neutral(0.025)	HMMPfam_TGFb_propeptide
TTI1	9675	genome.wustl.edu	37	20	36641759	36641760	+	Frame_Shift_Del	DEL	CA	CA	-	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	CA	CA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014657.1	-1	predicted	p.A154fs	1.000:1.000	-	-	-	-	-	-	-	-	-	superfamily_ARM-type_fold
FAM83D	81610	genome.wustl.edu	37	20	37570666	37570666	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030919.2	+1	validated	p.C213Y	0.459	241	0%	148	13.5%	12	0%	benign(0.045)	deleterious(0)	neutral(0.447)	HMMPfam_DUF1669,superfamily_Phospholipase D/nuclease
HNF4A	3172	genome.wustl.edu	37	20	43057079	43057079	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000457.3	+1	reviewed	p.L412F	1.000	74	0%	45	33.3%	1	0%	benign(0.095)	deleterious(0.04)	neutral(0.356)	NULL
MMP9	4318	genome.wustl.edu	37	20	44637609	44637609	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004994.2	+1	reviewed	p.G15D	1.000	79	0%	97	39.2%	5	0%	probably_damaging(1)	tolerated(0.14)	deleterious(0.750)	NULL
MMP9	4318	genome.wustl.edu	37	20	44639227	44639227	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004994.2	+1	reviewed	p.V159	1.000	38	0%	59	50.8%	7	0%	-	-	-	"HMMPfam_Peptidase_M10,HMMSmart_SM00235,superfamily_Metalloproteases (""zincins"") catalytic domain"
ZMYND8	23613	genome.wustl.edu	37	20	45878087	45878087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_183047.1	-1	reviewed	p.R573H	1.000	167	0%	197	37.1%	9	44.4%	probably_damaging(0.991)	deleterious(0.03)	deleterious(0.808)	NULL
ATP9A	10079	genome.wustl.edu	37	20	50241782	50241782	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006045.1	-1	validated	p.L655	1.000	136	0%	80	46.3%	9	77.7%	-	-	-	HMMPfam_Hydrolase,superfamily_HAD-like
SALL4	57167	genome.wustl.edu	37	20	50407920	50407920	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020436.3	-1	reviewed	p.A368T	0.121	81	0%	84	11.9%	0	-	benign(0.001)	tolerated(0.48)	neutral(0.011)	NULL
CSTF1	1477	genome.wustl.edu	37	20	54970682	54970682	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001033521.1	+1	reviewed	p.D25G	0.997	121	0%	73	35.6%	26	42.3%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
NPEPL1	79716	genome.wustl.edu	37	20	57287587	57287587	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024663.3	+1	validated	p.G318V	1.000	193	0%	256	13.3%	25	24%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Peptidase_M17,superfamily_Zn-dependent exopeptidases
GNAS	2778	genome.wustl.edu	37	20	57474001	57474001	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080425.2	+1	reviewed	p.G716V	1.000	128	0%	227	42.3%	389	37.5%	probably_damaging(0.989)	tolerated(0.51)	neutral(0.449)	HMMPfam_G-alpha,HMMSmart_SM00275,superfamily_P-loop containing nucleoside triphosphate hydrolases
DIDO1	11083	genome.wustl.edu	37	20	61528071	61528071	+	Silent	SNP	C	C	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033081.1	-1	reviewed	p.T622	0.003	28	0%	35	45.7%	2	0%	-	-	-	NULL
DIDO1	11083	genome.wustl.edu	37	20	61542793	61542793	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033081.1	-1	reviewed	p.G58C	0.016	65	0%	75	46.7%	8	50%	probably_damaging(0.962)	deleterious(0.01)	deleterious(0.810)	NULL
KCNQ2	3785	genome.wustl.edu	37	20	62038316	62038316	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_172107.2	-1	reviewed	p.R767Q	0.027	15	0%	18	44.4%	0	-	possibly_damaging(0.582)	tolerated(0.42)	neutral(0.214)	NULL
PRIC285	85441	genome.wustl.edu	37	20	62193008	62193008	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001037335.2	-1	reviewed	p.S2261N	0.000	30	0%	50	48%	8	37.5%	benign(0.01)	tolerated(0.62)	neutral(0.005)	superfamily_P-loop containing nucleoside triphosphate hydrolases
NCAM2	4685	genome.wustl.edu	37	21	22841015	22841015	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004540.2	+1	reviewed	p.P603S	1.000	169	0%	152	48%	1	100%	possibly_damaging(0.842)	tolerated(0.63)	neutral(0.326)	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
MORC3	23515	genome.wustl.edu	37	21	37713696	37713696	+	Splice_Site	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015358.2	+1	reviewed	e6-1	0.998	42	0%	70	47.1%	0	-	-	-	-	-
SLC37A1	54020	genome.wustl.edu	37	21	43963621	43963621	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018964.3	+1	reviewed	p.Y213	1.000	170	0%	153	43.1%	13	46.1%	-	-	-	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
TRPM2	7226	genome.wustl.edu	37	21	45860741	45860741	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003307.3	+1	reviewed	p.V1447I	0.040	73	0%	96	47.9%	39	38.4%	benign(0)	tolerated(1)	-	superfamily_Nudix
LRRC3	81543	genome.wustl.edu	37	21	45876939	45876939	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030891.3	+1	validated	p.A138T	0.998	36	0%	45	44.4%	0	-	probably_damaging(0.988)	tolerated(0.1)	deleterious(0.724)	superfamily_SSF52058
TUBA8	51807	genome.wustl.edu	37	22	18604465	18604465	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018943.1	+1	provisional	p.V75M	0.925	57	0%	32	12.5%	1	0%	benign(0.133)	deleterious(0)	neutral(0.456)	HMMPfam_Tubulin,superfamily_Tubulin nucleotide-binding domain-like
MRPL40	64976	genome.wustl.edu	37	22	19423197	19423197	+	Silent	SNP	T	T	C	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003776.2	+1	reviewed	p.T111	0.002	100	0%	145	44.1%	95	51.5%	-	-	-	HMMPfam_MRP-L28
ARVCF	421	genome.wustl.edu	37	22	19961201	19961201	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001670.1	-1	reviewed	p.N735S	1.000	36	0%	54	38.9%	29	41.3%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Arm,HMMSmart_SM00185,superfamily_ARM repeat
ARVCF	421	genome.wustl.edu	37	22	19969605	19969605	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001670.1	-1	reviewed	p.P74T	1.000	61	0%	82	37.8%	11	45.4%	probably_damaging(1)	tolerated(0.15)	deleterious(0.741)	NULL
SEZ6L	23544	genome.wustl.edu	37	22	26688520	26688520	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021115.4	+1	validated	p.G81	0.000	51	0%	31	41.9%	0	-	-	-	-	NULL
CCDC157	550631	genome.wustl.edu	37	22	30772483	30772483	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001017437.2	+1	validated	p.C670S	0.824	111	0%	174	40.8%	2	0%	benign(0.021)	tolerated(0.71)	neutral(0.003)	NULL
SFI1	9814	genome.wustl.edu	37	22	32014325	32014325	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001007467.1	+1	validated	p.A1217V	0.033	21	0%	40	42.5%	30	46.6%	probably_damaging(0.981)	deleterious(0)	deleterious(0.870)	NULL
TMPRSS6	164656	genome.wustl.edu	37	22	37465206	37465206	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153609.2	-1	reviewed	p.A683T	0.000	20	0%	35	51.4%	0	-	benign(0)	tolerated(0.51)	neutral(0.009)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
CARD10	29775	genome.wustl.edu	37	22	37906277	37906277	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014550.3	-1	reviewed	p.R284H	0.687	46	0%	55	49.1%	7	42.8%	probably_damaging(0.993)	deleterious(0.03)	deleterious(0.815)	NULL
CACNA1I	8911	genome.wustl.edu	37	22	40055075	40055075	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021096.3	+1	reviewed	p.V762M	1.000	119	0%	197	41.6%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
TNRC6B	23112	genome.wustl.edu	37	22	40661292	40661292	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015088.2	+1	validated	p.A353V	1.000	35	0%	67	31.3%	1	0%	probably_damaging(0.973)	deleterious(0.03)	deleterious(0.779)	NULL
MCHR1	2847	genome.wustl.edu	37	22	41077831	41077831	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005297.3	+1	reviewed	p.R390C	0.998	22	0%	45	48.9%	1	0%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	superfamily_Family A G protein-coupled receptor-like
TTLL12	23170	genome.wustl.edu	37	22	43575644	43575644	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015140.3	-1	validated	p.P274L	0.999	66	0%	114	10.5%	22	9%	benign(0.354)	deleterious(0.01)	deleterious(0.518)	NULL
FBLN1	2192	genome.wustl.edu	37	22	45960857	45960857	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006485.3	+1	reviewed	p.T597	0.001	88	0%	158	29.1%	0	-	-	-	-	NULL
PLXNB2	23654	genome.wustl.edu	37	22	50728516	50728516	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012401.2	-1	validated	p.R166	0.000	62	0%	93	12.9%	61	21.3%	-	-	-	HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema
PLXNB2	23654	genome.wustl.edu	37	22	50728595	50728595	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012401.2	-1	validated	p.E140G	1.000	41	0%	63	38.1%	42	40.4%	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema
ARSE	415	genome.wustl.edu	37	X	2867352	2867352	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000047.2	-1	reviewed	p.L283F	0.033	32	0%	35	45.7%	10	40%	possibly_damaging(0.626)	deleterious(0.02)	deleterious(0.601)	HMMPfam_Sulfatase,superfamily_Alkaline_phosphatase_core
TBL1X	6907	genome.wustl.edu	37	X	9656197	9656197	+	Silent	SNP	T	T	G	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001139466.1	+1	reviewed	p.A166	0.001	45	0%	50	14%	1	0%	-	-	-	NULL
ATXN3L	92552	genome.wustl.edu	37	X	13337040	13337040	+	Silent	SNP	G	G	A	rs187826331	by1000genomes	TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135995.1	-1	validated	p.V338	0.002	222	0%	107	40.2%	0	-	-	-	-	NULL
PHKA2	5256	genome.wustl.edu	37	X	18958168	18958168	+	Splice_Site	SNP	T	T	C	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000292.2	-1	reviewed	e9-2	0.999	80	0%	124	38.7%	0	-	-	-	-	-
MAP3K15	389840	genome.wustl.edu	37	X	19478134	19478136	+	In_Frame_Del	DEL	ATG	ATG	-	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	ATG	ATG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000338883	-1	known	p.I286in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
MAP3K15	389840	genome.wustl.edu	37	X	19507062	19507062	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000338883	-1	known	p.D129N	1.000	111	0%	89	47.2%	0	-	possibly_damaging(0.638)	tolerated(0.26)	neutral(0.258)	NULL
MAGEB4	4115	genome.wustl.edu	37	X	30261094	30261094	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002367.3	+1	reviewed	p.S281N	0.000	121	0%	147	10.9%	0	-	possibly_damaging(0.492)	deleterious(0.05)	deleterious(0.509)	HMMPfam_MAGE
DMD	1756	genome.wustl.edu	37	X	32430167	32430167	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004012.3	-1	reviewed	p.A3V	1.000	103	0%	90	33.3%	0	-	unknown(0)	-	-	NULL
USP9X	8239	genome.wustl.edu	37	X	41055854	41055855	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	AG	AG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039590.2	+1	reviewed	p.R1368fs	0.999:1.000	-	-	-	-	-	-	-	-	-	NULL
GPR82	27197	genome.wustl.edu	37	X	41586678	41586678	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080817.4	+1	validated	p.C133*	0.138	40	0%	25	56%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
HDAC6	10013	genome.wustl.edu	37	X	48681062	48681062	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006044.2	+1	reviewed	p.S790	1.000	132	0%	187	41.7%	21	95.2%	-	-	-	HMMPfam_Hist_deacetyl,superfamily_SSF52768
SLC35A2	7355	genome.wustl.edu	37	X	48762123	48762123	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005660.1	-1	provisional	p.A355T	0.000	64	0%	85	40%	21	0%	benign(0.017)	tolerated(0.76)	neutral(0.002)	NULL
KDM5C	8242	genome.wustl.edu	37	X	53247029	53247029	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004187.3	-1	reviewed	p.Y157	1.000	92	0%	101	41.6%	12	41.6%	-	-	-	HMMPfam_ARID,HMMSmart_SM00501,superfamily_ARID-like
AR	367	genome.wustl.edu	37	X	66765161	66765161	+	Missense_Mutation	SNP	A	A	T	rs5902610		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000044.2	+1	reviewed	p.Q58L	0.920	22	0%	44	36.4%	0	-	benign(0.386)	deleterious(0.01)	deleterious(0.529)	HMMPfam_Androgen_recep
YIPF6	286451	genome.wustl.edu	37	X	67718949	67718949	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173834.2	+1	provisional	p.A14V	0.000	67	0%	87	37.9%	4	0%	benign(0.018)	deleterious(0.04)	neutral(0.349)	NULL
EFNB1	1947	genome.wustl.edu	37	X	68059564	68059564	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004429.4	+1	reviewed	p.T155R	0.918	117	0%	210	21.9%	24	0%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_Ephrin,superfamily_Cupredoxin
PJA1	64219	genome.wustl.edu	37	X	68382672	68382672	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145119.3	-1	reviewed	p.P137L	0.069	113	0%	238	43.3%	6	0%	benign(0)	tolerated(0.25)	neutral(0.037)	NULL
ATP7A	538	genome.wustl.edu	37	X	77243740	77243740	+	Silent	SNP	A	A	C	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000052.4	+1	reviewed	p.V41	1.000	101	0%	80	35%	0	-	-	-	-	HMMPfam_HMA,superfamily_HMA heavy metal-associated domain,PatternScan_HMA_1
TSPAN6	7105	genome.wustl.edu	37	X	99890722	99890722	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003270.2	-1	reviewed	p.A37T	0.999	52	0%	152	21.7%	21	0%	benign(0.014)	tolerated(0.06)	neutral(0.323)	HMMPfam_Tetraspannin
CSTF2	1478	genome.wustl.edu	37	X	100088263	100088263	+	Silent	SNP	A	A	G	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001325.2	+1	reviewed	p.A434	0.007	109	0%	75	13.3%	3	33.3%	-	-	-	NULL
WBP5	51186	genome.wustl.edu	37	X	102612898	102612898	+	Silent	SNP	C	C	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001006612.1	+1	reviewed	p.R96	0.997	105	0%	204	44.1%	61	83.6%	-	-	-	HMMPfam_TFA
MID2	11043	genome.wustl.edu	37	X	107167711	107167711	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012216.3	+1	reviewed	p.E525A	1.000	73	0%	55	32.7%	1	100%	possibly_damaging(0.621)	tolerated(0.26)	neutral(0.251)	HMMPfam_fn3,superfamily_Fibronectin type III
CXorf56	63932	genome.wustl.edu	37	X	118676496	118676496	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022101.3	-1	validated	p.I162T	1.000	211	0%	187	34.8%	21	0%	possibly_damaging(0.864)	deleterious(0.01)	deleterious(0.740)	NULL
XIAP	331	genome.wustl.edu	37	X	123019821	123019821	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001167.2	+1	reviewed	p.T103	0.000	50	0%	71	9.9%	3	0%	-	-	-	superfamily_SSF57924
AIFM1	9131	genome.wustl.edu	37	X	129263582	129263582	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004208.3	-1	reviewed	p.H598Y	1.000	364	0.3%	339	10.9%	95	25.2%	benign(0.001)	tolerated(1)	-	superfamily_FAD/NAD-linked reductases dimerisation (C-terminal) domain
MST4	51765	genome.wustl.edu	37	X	131206366	131206366	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016542.3	+1	reviewed	p.P335S	0.999	120	0%	78	10.3%	0	-	benign(0)	tolerated(0.6)	neutral(0.004)	NULL
GPR112	139378	genome.wustl.edu	37	X	135430577	135430577	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153834.3	+1	reviewed	p.A1571D	0.003	168	0%	139	30.9%	0	-	benign(0.001)	tolerated(0.93)	-	NULL
ATP11C	286410	genome.wustl.edu	37	X	138850483	138850483	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173694.4	-1	validated	p.L779Q	0.999	151	0%	88	43.2%	1	0%	probably_damaging(1)	tolerated(0.1)	deleterious(0.786)	superfamily_HAD-like
SLITRK4	139065	genome.wustl.edu	37	X	142717225	142717225	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173078.3	-1	reviewed	p.A567V	1.000	222	0.5%	350	39.4%	1	0%	possibly_damaging(0.813)	tolerated(0.15)	deleterious(0.548)	HMMSmart_SM00082,superfamily_L domain-like
IDS	3423	genome.wustl.edu	37	X	148579793	148579793	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000202.5	-1	reviewed	p.P185S	1.000	105	0%	108	42.6%	14	0%	possibly_damaging(0.88)	tolerated(0.16)	neutral(0.403)	HMMPfam_Sulfatase,superfamily_Alkaline phosphatase-like
MAGEA10	4109	genome.wustl.edu	37	X	151303928	151303928	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001011543.1	-1	reviewed	p.S55	0.028	134	0%	157	47.1%	0	-	-	-	-	NULL
PDZD4	57595	genome.wustl.edu	37	X	153073998	153073998	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032512.2	-1	provisional	p.L38P	1.000	45	2.2%	68	50%	0	-	possibly_damaging(0.903)	deleterious(0)	deleterious(0.802)	superfamily_PDZ domain-like
ATP6AP1	537	genome.wustl.edu	37	X	153657560	153657560	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0MQ-01A-11D-A10B-09	TCGA-BG-A0MQ-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000439372	+1	known	p.G110C	0.000	40	0%	55	27.3%	3	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
