Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU
ENSG00000245496	0	genome.wustl.edu	37	10	27538797	27538797	+	RNA	SNP	G	G	A	rs16927663	byCluster;byFrequency;by1000genomes	TCGA-BH-A0HI-01A-11D-A099-09	TCGA-BH-A0HI-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	27538797	27538797	G	A	SNP	ENSG00000245496	ENST00000501900	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.018	-	-	-	
FAM129B	64855	genome.wustl.edu	37	9	130289586	130289586	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HI-01A-11D-A099-09	TCGA-BH-A0HI-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	130289586	130289586	G	A	SNP	FAM129B	NM_022833	human	genbank	57_37b	-1	validated	missense	c.202	p.R68C	0.948	superfamily_SSF50729	superfamily_SSF50729,HMMSmart_PH	-	no_errors
GINS2	51659	genome.wustl.edu	37	16	85711840	85711843	+	Frame_Shift_Del	DEL	CTCT	CTCT	-	novel	unknown	TCGA-BH-A0HI-01A-11D-A099-09	TCGA-BH-A0HI-10A-01D-A099-09	CTCT	CTCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	85711840	85711843	CTCT	-	DEL	GINS2	NM_016095	human	genbank	57_37b	-1	validated	frame_shift_del	c.536_533	p.E178fs	0.004:0.005:0.000:0.002	NULL	HMMPfam_Psf2	(deletion:cds_exon[85711818,85711943])	no_errors
HSPA8	3312	genome.wustl.edu	37	11	122930294	122930296	+	In_Frame_Del	DEL	AGG	AGG	-	novel	unknown	TCGA-BH-A0HI-01A-11D-A099-09	TCGA-BH-A0HI-10A-01D-A099-09	AGG	AGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	122930294	122930296	AGG	-	DEL	HSPA8	NM_006597	human	genbank	57_37b	-1	reviewed	in_frame_del	c.1007_1005	p.L336in_frame_del	1.000:0.975:0.988	HMMPfam_HSP70,superfamily_Actin-like ATPase domain,PatternScan_HSP70_3	superfamily_Actin-like ATPase domain,HMMPfam_HSP70,PatternScan_HSP70_1,PatternScan_HSP70_2,PatternScan_HSP70_3,superfamily_Heat shock protein 70kD (HSP70) peptide-binding domain,superfamily_Heat shock protein 70kD (HSP70) C-terminal subdomain	(deletion:cds_exon[122930181,122930736])	no_errors
LOXHD1	125336	genome.wustl.edu	37	18	44122702	44122702	+	Missense_Mutation	SNP	G	G	A	rs17854178	unknown	TCGA-BH-A0HI-01A-11D-A099-09	TCGA-BH-A0HI-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	44122702	44122702	G	A	SNP	LOXHD1	NM_144612	human	genbank	57_37b	-1	reviewed	missense	c.2902	p.H968Y	1.000	superfamily_Lipase_LipOase,HMMPfam_PLAT,HMMSmart_LH2	superfamily_Lipase_LipOase,HMMPfam_PLAT,HMMSmart_LH2	-	
MAST1	22983	genome.wustl.edu	37	19	12969490	12969490	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HI-01A-11D-A099-09	TCGA-BH-A0HI-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	12969490	12969490	G	A	SNP	MAST1	NM_014975	human	genbank	57_37b	+1	validated	missense	c.1303	p.V435I	1.000	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase	PatternScan_PROTEIN_KINASE_ATP,HMMPfam_DUF1908,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST,HMMSmart_S_TK_X,HMMPfam_Pkinase_C,superfamily_PDZ,HMMSmart_PDZ,HMMPfam_PDZ	-	no_errors
MTMR4	9110	genome.wustl.edu	37	17	56581178	56581178	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0HI-01A-11D-A099-09	TCGA-BH-A0HI-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	56581178	56581178	C	G	SNP	MTMR4	NM_004687	human	genbank	57_37b	-1	validated	missense	c.1738	p.G580R	1.000	NULL	superfamily_PH domain-like,superfamily_(Phosphotyrosine protein) phosphatases II,HMMPfam_Myotub-related,PatternScan_TYR_PHOSPHATASE_1,HMMSmart_SM00064,HMMPfam_FYVE,superfamily_FYVE/PHD zinc finger	-	no_errors
MYPN	84665	genome.wustl.edu	37	10	69934047	69934047	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HI-01A-11D-A099-09	TCGA-BH-A0HI-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	69934047	69934047	C	T	SNP	MYPN	NM_032578	human	genbank	57_37b	+1	validated	missense	c.2198	p.T733I	0.004	NULL	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,PatternScan_ER_TARGET	-	no_errors
NRXN2	9379	genome.wustl.edu	37	11	64421180	64421180	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HI-01A-11D-A099-09	TCGA-BH-A0HI-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	64421180	64421180	C	T	SNP	NRXN2	NM_015080	human	genbank	57_37b	-1	reviewed	missense	c.2404	p.G802S	1.000	superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2	superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2,HMMSmart_SM00181,HMMPfam_EGF,HMMSmart_SM00294	-	no_errors
OR5H1	26341	genome.wustl.edu	37	3	97851563	97851563	+	Silent	SNP	T	T	C	novel	unknown	TCGA-BH-A0HI-01A-11D-A099-09	TCGA-BH-A0HI-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	97851563	97851563	T	C	SNP	OR5H1	NM_001005338	human	genbank	57_37b	+1	provisional	silent	c.22	p.L8	0.000	superfamily_SSF81321	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
PDE6B	5158	genome.wustl.edu	37	4	658672	658672	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HI-01A-11D-A099-09	TCGA-BH-A0HI-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	658672	658672	C	T	SNP	PDE6B	NM_000283	human	genbank	57_37b	+1	reviewed	missense	c.2132	p.A711V	1.000	superfamily_HD-domain/PDEase-like,HMMSmart_SM00471,HMMPfam_PDEase_I	superfamily_GAF domain-like,HMMPfam_GAF,HMMSmart_SM00065,superfamily_HD-domain/PDEase-like,HMMSmart_SM00471,HMMPfam_PDEase_I,PatternScan_PDEASE_I	-	no_errors
PIK3CA	5290	genome.wustl.edu	37	3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	rs104886003	unknown	TCGA-BH-A0HI-01A-11D-A099-09	TCGA-BH-A0HI-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	178936091	178936091	G	A	SNP	PIK3CA	NM_006218	human	genbank	57_37b	+1	reviewed	missense	c.1633	p.E545K	1.000	superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	
PLXNB3	5365	genome.wustl.edu	37	X	153033170	153033170	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0HI-01A-11D-A099-09	TCGA-BH-A0HI-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	153033170	153033170	G	A	SNP	PLXNB3	NM_005393	human	genbank	57_37b	+1	reviewed	silent	c.888	p.P296	0.001	superfamily_Sema,HMMSmart_Sema	superfamily_Sema,HMMPfam_Sema,HMMSmart_Sema,HMMPfam_PSI,HMMSmart_PSI,superfamily_Plexin-like_fold,superfamily_Ig_E-set,HMMSmart_IPT,HMMPfam_TIG,HMMPfam_Plexin_cytopl,superfamily_Rho_GAP	-	no_errors
PRIC285	85441	genome.wustl.edu	37	20	62196807	62196807	+	Missense_Mutation	SNP	T	T	C	rs310632	byCluster;byFrequency;byHapMap;by1000genomes	TCGA-BH-A0HI-01A-11D-A099-09	TCGA-BH-A0HI-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	62196807	62196807	T	C	SNP	PRIC285	NM_001037335	human	genbank	57_37b	-1	reviewed	missense	c.3368	p.H1123R	0.034	NULL	PatternScan_ZINC_FINGER_C2H2_1,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_RNB,PatternScan_RIBONUCLEASE_II	-	
RGMB	285704	genome.wustl.edu	37	5	98115336	98115336	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0HI-01A-11D-A099-09	TCGA-BH-A0HI-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	98115336	98115336	C	T	SNP	RGMB	NM_001012761	human	genbank	57_37b	+1	validated	silent	c.312	p.F104	0.908	HMMPfam_RGM_N	HMMPfam_RGM_N,HMMPfam_RGM_C	-	no_errors
RYR2	6262	genome.wustl.edu	37	1	237954734	237954734	+	Silent	SNP	T	T	C	novel	unknown	TCGA-BH-A0HI-01A-11D-A099-09	TCGA-BH-A0HI-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	237954734	237954734	T	C	SNP	RYR2	NM_001035	human	genbank	57_37b	+1	reviewed	silent	c.13482	p.Y4494	1.000	HMMPfam_RR_TM4-6	HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_RYDR_ITPR,HMMPfam_SPRY,HMMSmart_SM00449,HMMPfam_RyR,HMMPfam_RIH_assoc,superfamily_EF-hand,HMMPfam_RR_TM4-6,HMMPfam_Ion_trans	-	no_errors
SEMA6C	10500	genome.wustl.edu	37	1	151111915	151111915	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HI-01A-11D-A099-09	TCGA-BH-A0HI-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	151111915	151111915	G	A	SNP	SEMA6C	NM_030913	human	genbank	57_37b	-1	reviewed	missense	c.340	p.R114W	0.908	superfamily_Sema domain,HMMSmart_SM00630,HMMPfam_Sema	superfamily_Sema domain,HMMSmart_SM00630,HMMPfam_Sema,HMMPfam_PSI,superfamily_Plexin repeat	-	no_errors
SLC26A7	115111	genome.wustl.edu	37	8	92406479	92406479	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0HI-01A-11D-A099-09	TCGA-BH-A0HI-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	92406479	92406479	C	A	SNP	SLC26A7	NM_134266	human	genbank	57_37b	+1	reviewed	missense	c.1969	p.L657I	0.000	NULL	HMMPfam_Sulfate_transp,superfamily_STAS,HMMPfam_STAS	-	no_errors
SULF2	55959	genome.wustl.edu	37	20	46307432	46307432	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HI-01A-11D-A099-09	TCGA-BH-A0HI-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	46307432	46307432	C	T	SNP	SULF2	NM_018837	human	genbank	57_37b	-1	validated	missense	c.1181	p.R394Q	1.000	HMMPfam_Sulfatase,superfamily_Alkaline phosphatase-like	HMMPfam_Sulfatase,superfamily_Alkaline phosphatase-like,PatternScan_SULFATASE_1	-	no_errors
TLR4	7099	genome.wustl.edu	37	9	120474783	120474783	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HI-01A-11D-A099-09	TCGA-BH-A0HI-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	120474783	120474783	C	T	SNP	TLR4	NM_138554	human	genbank	57_37b	+1	reviewed	missense	c.377	p.S126L	0.000	superfamily_L domain-like	superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00365,HMMSmart_SM00082,HMMPfam_LRRCT,superfamily_Toll/Interleukin receptor TIR domain,HMMSmart_SM00255,HMMPfam_TIR	-	no_errors
TRBC1	0	genome.wustl.edu	37	7	142428804	142428804	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0HI-01A-11D-A099-09	TCGA-BH-A0HI-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	142428804	142428804	G	T	SNP	TRBC1	ENST00000435184	human	ensembl	57_37b	+1	known	missense	c.164	p.R55L	0.997	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMPfam_C1-set,HMMSmart_SM00407	-	no_errors
TRIP11	9321	genome.wustl.edu	37	14	92460257	92460257	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-BH-A0HI-01A-11D-A099-09	TCGA-BH-A0HI-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	92460257	92460257	C	T	SNP	TRIP11	NM_004239	human	genbank	57_37b	-1	reviewed	splice_site	c.5057-1	e15-1	1.000	-	-	-	no_errors
TTN	7273	genome.wustl.edu	37	2	179427389	179427389	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0HI-01A-11D-A099-09	TCGA-BH-A0HI-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	179427389	179427389	T	C	SNP	TTN	ENST00000356127	human	ensembl	57_37b	-1	known	missense	c.75760	p.T25254A	0.048	HMMSmart_SM00060,HMMPfam_fn3	HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_Titin_Z,HMMSmart_SM00406,PatternScan_IG_MHC,HMMPfam_PPAK,HMMPfam_ig,HMMSmart_SM00060,HMMPfam_fn3,PatternScan_FGGY_KINASES_1,PatternScan_PEROXIDASE_1,HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_TYR	-	no_errors
VEZT	55591	genome.wustl.edu	37	12	95645809	95645809	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HI-01A-11D-A099-09	TCGA-BH-A0HI-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	95645809	95645809	G	A	SNP	VEZT	NM_017599	human	genbank	57_37b	+1	validated	missense	c.130	p.E44K	0.975	NULL	NULL	-	no_errors
ZEB2	9839	genome.wustl.edu	37	2	145158777	145158777	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HI-01A-11D-A099-09	TCGA-BH-A0HI-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	145158777	145158777	C	T	SNP	ZEB2	NM_014795	human	genbank	57_37b	-1	reviewed	missense	c.905	p.R302Q	1.000	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	PatternScan_HOMEOBOX_1,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_HOX	-	no_errors
ZFPM1	161882	genome.wustl.edu	37	16	88594567	88594567	+	Silent	SNP	C	C	T	rs35121729	byCluster;byFrequency;by1000genomes	TCGA-BH-A0HI-01A-11D-A099-09	TCGA-BH-A0HI-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	88594567	88594567	C	T	SNP	ZFPM1	NM_153813	human	genbank	57_37b	+1	validated	silent	c.633	p.C211	0.966	NULL	superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	
ZNF184	7738	genome.wustl.edu	37	6	27419341	27419341	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HI-01A-11D-A099-09	TCGA-BH-A0HI-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	27419341	27419341	C	T	SNP	ZNF184	NM_007149	human	genbank	57_37b	-1	validated	missense	c.1997	p.G666E	0.997	superfamily_C2H2 and C2HC zinc fingers	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355	-	no_errors
ZNF488	118738	genome.wustl.edu	37	10	48370595	48370595	+	Silent	SNP	G	G	A	rs11204210	byCluster;byFrequency;by1000genomes	TCGA-BH-A0HI-01A-11D-A099-09	TCGA-BH-A0HI-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	48370595	48370595	G	A	SNP	ZNF488	NM_153034	human	genbank	57_37b	+1	provisional	silent	c.63	p.G21	0.000	NULL	HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2	-	
