Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU
ABCA1	19	genome.wustl.edu	37	9	107568529	107568529	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HN-01A-11D-A099-09	TCGA-BH-A0HN-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	107568529	107568529	G	A	SNP	ABCA1	NM_005502	human	genbank	57_37b	-1	reviewed	missense	c.4457	p.P1486L	1.000	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1	-	no_errors
AMOTL1	154810	genome.wustl.edu	37	11	94554978	94554978	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0HN-01A-11D-A099-09	TCGA-BH-A0HN-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	94554978	94554978	G	T	SNP	AMOTL1	NM_130847	human	genbank	57_37b	+1	reviewed	missense	c.1404	p.K468N	1.000	NULL	NULL	-	no_errors
ANK2	287	genome.wustl.edu	37	4	114158316	114158316	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0HN-01A-11D-A099-09	TCGA-BH-A0HN-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	114158316	114158316	C	T	SNP	ANK2	NM_001148	human	genbank	57_37b	+1	reviewed	silent	c.657	p.D219	0.994	superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank	superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank,HMMPfam_ZU5,PatternScan_ALDEHYDE_DEHYDR_GLU,superfamily_DEATH_like,HMMSmart_DEATH,HMMPfam_Death	-	no_errors
AR	367	genome.wustl.edu	37	X	66765161	66765161	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BH-A0HN-01A-11D-A099-09	TCGA-BH-A0HN-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	66765161	66765161	A	T	SNP	AR	NM_000044	human	genbank	57_37b	+1	reviewed	missense	c.173	p.Q58L	0.920	HMMPfam_Androgen_recep	HMMPfam_Androgen_recep,HMMSmart_SM00399,HMMPfam_zf-C4,superfamily_Glucocorticoid receptor-like (DNA-binding domain),PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,HMMSmart_SM00430,HMMPfam_Hormone_recep	-	no_errors
ATP7A	538	genome.wustl.edu	37	X	77268400	77268400	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0HN-01A-11D-A099-09	TCGA-BH-A0HN-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	77268400	77268400	A	G	SNP	ATP7A	NM_000052	human	genbank	57_37b	+1	reviewed	missense	c.2197	p.I733V	1.000	NULL	superfamily_HMA heavy metal-associated domain,HMMPfam_HMA,PatternScan_HMA_1,HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transmembrane domain M,superfamily_Calcium ATPase transduction domain A,superfamily_HAD-like,HMMPfam_Hydrolase,PatternScan_ATPASE_E1_E2,superfamily_Metal cation-transporting ATPase ATP-binding domain N	-	no_errors
ATPGD1	57571	genome.wustl.edu	37	11	67187071	67187073	+	In_Frame_Del	DEL	GGA	GGA	-	novel	unknown	TCGA-BH-A0HN-01A-11D-A099-09	TCGA-BH-A0HN-10A-01D-A099-09	GGA	GGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	67187071	67187073	GGA	-	DEL	ATPGD1	NM_020811	human	genbank	57_37b	+1	validated	in_frame_del	c.597_599	p.E203in_frame_del	1.000:1.000:1.000	NULL	HMMPfam_ATP-grasp_3,superfamily_Glutathione synthetase ATP-binding domain-like,PatternScan_CPSASE_2	(deletion:cds_exon[67186958,67187132])	no_errors
BMP2K	55589	genome.wustl.edu	37	4	79780777	79780777	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0HN-01A-11D-A099-09	TCGA-BH-A0HN-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	79780777	79780777	T	C	SNP	BMP2K	NM_198892	human	genbank	57_37b	+1	reviewed	missense	c.923	p.I308T	1.000	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220	superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST	-	no_errors
BMS1P4	0	genome.wustl.edu	37	10	75490217	75490217	+	RNA	SNP	T	C	C	rs11814282	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-BH-A0HN-01A-11D-A099-09	TCGA-BH-A0HN-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	75490217	75490217	T	C	SNP	BMS1P4	NR_026592	human	genbank	57_37b	-1	provisional	rna	NULL	NULL	0.000	-	-	-	
C17orf53	78995	genome.wustl.edu	37	17	42225492	42225492	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0HN-01A-11D-A099-09	TCGA-BH-A0HN-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	42225492	42225492	C	T	SNP	C17orf53	NM_024032	human	genbank	57_37b	+1	validated	silent	c.321	p.S107	0.005	NULL	NULL	-	no_errors
C4orf36	132989	genome.wustl.edu	37	4	87809322	87809322	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0HN-01A-11D-A099-09	TCGA-BH-A0HN-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	87809322	87809322	G	C	SNP	C4orf36	NM_144645	human	genbank	57_37b	-1	validated	missense	c.172	p.L58V	0.023	NULL	NULL	-	no_errors
C7orf57	136288	genome.wustl.edu	37	7	48086112	48086112	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0HN-01A-11D-A099-09	TCGA-BH-A0HN-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	48086112	48086112	C	G	SNP	C7orf57	NM_001100159	human	genbank	57_37b	+1	validated	missense	c.406	p.Q136E	0.024	NULL	NULL	-	no_errors
CEACAM18	729767	genome.wustl.edu	37	19	51988280	51988280	+	Missense_Mutation	SNP	G	A	A	rs10414941	byCluster;byFrequency;by1000genomes	TCGA-BH-A0HN-01A-11D-A099-09	TCGA-BH-A0HN-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	51988280	51988280	G	A	SNP	CEACAM18	ENST00000451086	human	ensembl	57_37b	+1	known	missense	c.1010	p.G337E	0.000	NULL	superfamily_SSF48726,HMMSmart_IGc2	-	
COL14A1	7373	genome.wustl.edu	37	8	121383048	121383048	+	Missense_Mutation	SNP	T	C	C	rs4463470	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-BH-A0HN-01A-11D-A099-09	TCGA-BH-A0HN-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	121383048	121383048	T	C	SNP	COL14A1	ENST00000440844	human	ensembl	57_37b	+1	known	missense	c.425	p.F142S	0.000	NULL	HMMPfam_Collagen	-	
COL16A1	1307	genome.wustl.edu	37	1	32124115	32124115	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HN-01A-11D-A099-09	TCGA-BH-A0HN-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	32124115	32124115	C	T	SNP	COL16A1	NM_001856	human	genbank	57_37b	-1	reviewed	missense	c.3994	p.G1332S	1.000	HMMPfam_Collagen	HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Collagen	-	no_errors
ENSG00000182208	0	genome.wustl.edu	37	11	1507731	1507731	+	Missense_Mutation	SNP	A	G	G	rs1881503	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-BH-A0HN-01A-11D-A099-09	TCGA-BH-A0HN-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	1507731	1507731	A	G	SNP	ENSG00000182208	ENST00000399693	human	ensembl	57_37b	-1	known	missense	c.56	p.L19P	0.999	NULL	HMMPfam_Mob1_phocein,superfamily_Mob1/phocein	-	
ENSG00000231972	0	genome.wustl.edu	37	15	92292949	92292949	+	Silent	SNP	T	T	G	rs114751368	by1000genomes	TCGA-BH-A0HN-01A-11D-A099-09	TCGA-BH-A0HN-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	92292949	92292949	T	G	SNP	ENSG00000231972	ENST00000419607	human	ensembl	57_37b	+1	known	silent	c.420	p.G140	0.000	NULL	NULL	-	
ENSG00000231972	0	genome.wustl.edu	37	15	92294289	92294289	+	Missense_Mutation	SNP	G	G	T	rs112265641	byCluster	TCGA-BH-A0HN-01A-11D-A099-09	TCGA-BH-A0HN-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	92294289	92294289	G	T	SNP	ENSG00000231972	ENST00000419607	human	ensembl	57_37b	+1	known	missense	c.1338	p.R446S	0.000	NULL	NULL	-	
ENSG00000245925	0	genome.wustl.edu	37	10	81915136	81915136	+	RNA	SNP	T	C	C	rs2789686	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-BH-A0HN-01A-11D-A099-09	TCGA-BH-A0HN-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	81915136	81915136	T	C	SNP	ENSG00000245925	ENST00000500880	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.000	-	-	-	
ENSG00000246271	0	genome.wustl.edu	37	11	47250319	47250319	+	RNA	SNP	C	T	T	rs11039139	unknown	TCGA-BH-A0HN-01A-11D-A099-09	TCGA-BH-A0HN-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	47250319	47250319	C	T	SNP	ENSG00000246271	ENST00000501282	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.038	-	-	-	
ENSG00000246434	0	genome.wustl.edu	37	14	69340599	69340599	+	RNA	SNP	C	T	T	rs181456	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-BH-A0HN-01A-11D-A099-09	TCGA-BH-A0HN-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	69340599	69340599	C	T	SNP	ENSG00000246434	ENST00000499463	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.000	-	-	-	
ENSG00000247089	0	genome.wustl.edu	37	20	60979370	60979370	+	RNA	SNP	T	T	C	rs2427322	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-BH-A0HN-01A-11D-A099-09	TCGA-BH-A0HN-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	60979370	60979370	T	C	SNP	ENSG00000247089	ENST00000502010	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.444	-	-	-	
ENSG00000247666	0	genome.wustl.edu	37	7	100877456	100877456	+	RNA	SNP	T	C	C	rs2302428	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-BH-A0HN-01A-11D-A099-09	TCGA-BH-A0HN-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	100877456	100877456	T	C	SNP	ENSG00000247666	ENST00000500948	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.000	-	-	-	
ENSG00000247667	0	genome.wustl.edu	37	7	3081758	3081758	+	RNA	SNP	C	T	T	rs10951014	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-BH-A0HN-01A-11D-A099-09	TCGA-BH-A0HN-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	3081758	3081758	C	T	SNP	ENSG00000247667	ENST00000498927	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.000	-	-	-	
FLYWCH1	84256	genome.wustl.edu	37	16	2987002	2987002	+	Missense_Mutation	SNP	C	T	T	rs2074357	byCluster;byFrequency;byHapMap;by1000genomes	TCGA-BH-A0HN-01A-11D-A099-09	TCGA-BH-A0HN-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	2987002	2987002	C	T	SNP	FLYWCH1	ENST00000445831	human	ensembl	57_37b	+1	known	missense	c.473	p.P158L	0.002	NULL	HMMPfam_FLYWCH	-	
GIPC3	126326	genome.wustl.edu	37	19	3586586	3586586	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HN-01A-11D-A099-09	TCGA-BH-A0HN-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	3586586	3586586	C	T	SNP	GIPC3	NM_133261	human	genbank	57_37b	+1	validated	nonsense	c.319	p.R107*	0.990	superfamily_PDZ	superfamily_PDZ,HMMPfam_PDZ,HMMSmart_PDZ	-	no_errors
GLB1L3	112937	genome.wustl.edu	37	11	134147635	134147635	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BH-A0HN-01A-11D-A099-09	TCGA-BH-A0HN-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	134147635	134147635	G	A	SNP	GLB1L3	NM_001080407	human	genbank	57_37b	+1	validated	missense	c.191	p.R64Q	0.011	superfamily_(Trans)glycosidases	superfamily_(Trans)glycosidases,HMMPfam_Glyco_hydro_35	-	no_errors
GLG1	2734	genome.wustl.edu	37	16	74483288	74483288	+	RNA	SNP	A	T	T	rs75534023	byCluster;byFrequency;by1000genomes	TCGA-BH-A0HN-01A-11D-A099-09	TCGA-BH-A0HN-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	74483288	74483288	A	T	SNP	GLG1	NR_027264	human	genbank	57_37b	-1	validated	rna	NULL	NULL	0.000	-	-	-	
GNB1	2782	genome.wustl.edu	37	1	1720602	1720602	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0HN-01A-11D-A099-09	TCGA-BH-A0HN-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	1720602	1720602	A	G	SNP	GNB1	NM_002074	human	genbank	57_37b	-1	reviewed	missense	c.806	p.I269T	1.000	superfamily_WD40 repeat-like,HMMSmart_SM00320	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors
GRID1	2894	genome.wustl.edu	37	10	87362239	87362239	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HN-01A-11D-A099-09	TCGA-BH-A0HN-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	87362239	87362239	G	A	SNP	GRID1	NM_017551	human	genbank	57_37b	-1	reviewed	missense	c.2821	p.R941W	1.000	NULL	superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor,HMMSmart_SM00079,superfamily_Periplasmic binding protein-like II,HMMPfam_Lig_chan-Glu_bd,HMMPfam_Lig_chan,PatternScan_ALDEHYDE_DEHYDR_GLU	-	no_errors
LAMA2	3908	genome.wustl.edu	37	6	129813116	129813129	+	Frame_Shift_Del	DEL	GTTAAAAAGCTTTT	GTTAAAAAGCTTTT	-	novel	unknown	TCGA-BH-A0HN-01A-11D-A099-09	TCGA-BH-A0HN-10A-01D-A099-09	GTTAAAAAGCTTTT	GTTAAAAAGCTTTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	129813116	129813129	GTTAAAAAGCTTTT	-	DEL	LAMA2	NM_000426	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.7969_7982	p.V2657fs	0.915:0.915:0.529:0.979:0.999:1.000:1.000:1.000:1.000:1.000:1.000:0.959:0.995:0.992	superfamily_ConA_like_lec_gl,HMMSmart_LamG,HMMPfam_Laminin_G_1	HMMSmart_LamNT,HMMPfam_Laminin_N,superfamily_Gal_bind_like,HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,superfamily_ConA_like_lec_gl,PatternScan_EGF_1,PatternScan_EGF_LAM_1,superfamily_SSF57196,PatternScan_EGF_2,HMMSmart_LamB,HMMPfam_Laminin_B,HMMPfam_Laminin_I,superfamily_SSF56399,HMMPfam_Laminin_II,HMMSmart_LamG,HMMPfam_Laminin_G_1,HMMPfam_Laminin_G_2	(deletion:cds_exon[129813046,129813222])	no_errors
LOC100287174	0	genome.wustl.edu	37	1	35256386	35256386	+	Missense_Mutation	SNP	T	C	C	rs6671349	byCluster;by1000genomes	TCGA-BH-A0HN-01A-11D-A099-09	TCGA-BH-A0HN-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	35256386	35256386	T	C	SNP	LOC100287174	XM_002342072	human	genbank	57_37b	-1	model	missense	c.208	p.I70V	0.000	NULL	NULL	-	
LOC100290868	0	genome.wustl.edu	37	9	35676607	35676607	+	RNA	SNP	G	A	A	rs2301372	byCluster;byFrequency;by1000genomes	TCGA-BH-A0HN-01A-11D-A099-09	TCGA-BH-A0HN-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	35676607	35676607	G	A	SNP	LOC100290868	XR_079245	human	genbank	57_37b	-1	model	rna	NULL	NULL	0.031	-	-	-	
LOC100293008	0	genome.wustl.edu	37	8	22665411	22665411	+	RNA	SNP	C	G	G	rs11135680	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-BH-A0HN-01A-11D-A099-09	TCGA-BH-A0HN-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	22665411	22665411	C	G	SNP	LOC100293008	XR_079050	human	genbank	57_37b	-1	model	rna	NULL	NULL	0.003	-	-	-	
LOC201651	201651	genome.wustl.edu	37	3	151493530	151493530	+	RNA	SNP	A	G	G	rs12152282	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-BH-A0HN-01A-11D-A099-09	TCGA-BH-A0HN-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	151493530	151493530	A	G	SNP	LOC201651	NR_026915	human	genbank	57_37b	+1	provisional	rna	NULL	NULL	0.827	-	-	-	
LOC728832	728832	genome.wustl.edu	37	9	44246733	44246733	+	RNA	SNP	A	A	G	rs28501279	by1000genomes	TCGA-BH-A0HN-01A-11D-A099-09	TCGA-BH-A0HN-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	44246733	44246733	A	G	SNP	LOC728832	XR_078405	human	genbank	57_37b	+1	model	rna	NULL	NULL	0.047	-	-	-	
LPAR1	1902	genome.wustl.edu	37	9	113637890	113637890	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0HN-01A-11D-A099-09	TCGA-BH-A0HN-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	113637890	113637890	G	A	SNP	LPAR1	NM_001401	human	genbank	57_37b	-1	reviewed	silent	c.906	p.F302	1.000	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
MDN1	23195	genome.wustl.edu	37	6	90402199	90402199	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-BH-A0HN-01A-11D-A099-09	TCGA-BH-A0HN-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	90402199	90402199	T	-	DEL	MDN1	NM_014611	human	genbank	57_37b	-1	provisional	frame_shift_del	c.10550	p.D3517fs	1.000	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA_5,superfamily_vWA-like,HMMSmart_SM00327	(deletion:cds_exon[90402162,90402867])	no_errors
MLL3	58508	genome.wustl.edu	37	7	151962208	151962208	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HN-01A-11D-A099-09	TCGA-BH-A0HN-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	151962208	151962208	G	A	SNP	MLL3	NM_170606	human	genbank	57_37b	-1	reviewed	missense	c.1099	p.H367Y	1.000	superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,HMMSmart_SM00184,PatternScan_ZF_PHD_1	PatternScan_HMGI_Y,HMMPfam_AT_hook,HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,HMMPfam_PHD,HMMSmart_SM00184,PatternScan_ZF_PHD_1,PatternScan_ATPASE_ALPHA_BETA,HMMSmart_SM00398,HMMPfam_HMG_box,HMMPfam_FYRN,HMMSmart_SM00541,HMMPfam_FYRC,HMMSmart_SM00542,superfamily_SET domain,HMMPfam_SET,HMMSmart_SM00317,HMMSmart_SM00508	-	no_errors
MRPL45	84311	genome.wustl.edu	37	17	36476574	36476579	+	In_Frame_Del	DEL	GTTCAA	GTTCAA	-	novel	unknown	TCGA-BH-A0HN-01A-11D-A099-09	TCGA-BH-A0HN-10A-01D-A099-09	GTTCAA	GTTCAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	36476574	36476579	GTTCAA	-	DEL	MRPL45	NM_032351	human	genbank	57_37b	+1	reviewed	in_frame_del	c.583_588	p.QV196in_frame_del	1.000:1.000:1.000:1.000:1.000:0.980	HMMPfam_Tim44	HMMPfam_Tim44	(deletion:cds_exon[36476502,36476651])	no_errors
NUP205	23165	genome.wustl.edu	37	7	135311088	135311088	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HN-01A-11D-A099-09	TCGA-BH-A0HN-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	135311088	135311088	G	A	SNP	NUP205	NM_015135	human	genbank	57_37b	+1	validated	missense	c.4772	p.R1591H	1.000	NULL	NULL	-	no_errors
OPTN	10133	genome.wustl.edu	37	10	13166055	13166055	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HN-01A-11D-A099-09	TCGA-BH-A0HN-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	13166055	13166055	G	A	SNP	OPTN	NM_001008211	human	genbank	57_37b	+1	reviewed	missense	c.943	p.E315K	0.994	NULL	NULL	-	no_errors
OR6B1	135946	genome.wustl.edu	37	7	143701973	143701982	+	Frame_Shift_Del	DEL	TCAAGGAAGC	TCAAGGAAGC	-	novel	unknown	TCGA-BH-A0HN-01A-11D-A099-09	TCGA-BH-A0HN-10A-01D-A099-09	TCAAGGAAGC	TCAAGGAAGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	143701973	143701982	TCAAGGAAGC	-	DEL	OR6B1	NM_001005281	human	genbank	57_37b	+1	provisional	frame_shift_del	c.884_893	p.K296fs	0.969:0.871:0.903:0.911:0.907:0.922:0.917:0.913:0.993:0.998	superfamily_Family A G protein-coupled receptor-like	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	(deletion:cds_exon[143701090,143702025])	no_errors
PIK3CA	5290	genome.wustl.edu	37	3	178921553	178921553	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-BH-A0HN-01A-11D-A099-09	TCGA-BH-A0HN-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	178921553	178921553	T	A	SNP	PIK3CA	NM_006218	human	genbank	57_37b	+1	reviewed	missense	c.1035	p.N345K	1.000	HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors
PXDNL	137902	genome.wustl.edu	37	8	52361599	52361599	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0HN-01A-11D-A099-09	TCGA-BH-A0HN-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	52361599	52361599	G	A	SNP	PXDNL	NM_144651	human	genbank	57_37b	-1	validated	silent	c.1329	p.D443	0.002	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408	superfamily_L domain-like,HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00082,HMMPfam_LRRCT,superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,superfamily_Heme-dependent peroxidases,HMMPfam_An_peroxidase,HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1	-	no_errors
SGCB	6443	genome.wustl.edu	37	4	52899712	52899712	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0HN-01A-11D-A099-09	TCGA-BH-A0HN-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	52899712	52899712	C	A	SNP	SGCB	NM_000232	human	genbank	57_37b	-1	reviewed	missense	c.128	p.G43V	1.000	NULL	HMMPfam_Sarcoglycan_1	-	no_errors
SLC39A13	91252	genome.wustl.edu	37	11	47436878	47436878	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0HN-01A-11D-A099-09	TCGA-BH-A0HN-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	47436878	47436878	C	T	SNP	SLC39A13	NM_001128225	human	genbank	57_37b	+1	validated	silent	c.1080	p.I360	0.477	HMMPfam_Zip	HMMPfam_Zip	-	no_errors
SVEP1	79987	genome.wustl.edu	37	9	113169227	113169227	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HN-01A-11D-A099-09	TCGA-BH-A0HN-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	113169227	113169227	C	T	SNP	SVEP1	NM_153366	human	genbank	57_37b	-1	validated	missense	c.8653	p.D2885N	0.000	superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032	superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,superfamily_Growth factor receptor domain,PatternScan_EGF_2,HMMPfam_GCC2_GCC3,superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_HYR,superfamily_EGF/Laminin,HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_CA,PatternScan_ASX_HYDROXYL,HMMSmart_SM00159,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Pentaxin,HMMPfam_EGF_CA,HMMPfam_EGF_2	-	no_errors
TIMM22	29928	genome.wustl.edu	37	17	900500	900500	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BH-A0HN-01A-11D-A099-09	TCGA-BH-A0HN-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	900500	900500	C	T	SNP	TIMM22	NM_013337	human	genbank	57_37b	+1	provisional	missense	c.118	p.R40W	0.898	NULL	HMMPfam_Tim17	-	no_errors
TSKS	60385	genome.wustl.edu	37	19	50251415	50251415	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HN-01A-11D-A099-09	TCGA-BH-A0HN-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	50251415	50251415	G	A	SNP	TSKS	NM_021733	human	genbank	57_37b	-1	reviewed	missense	c.506	p.S169F	0.829	NULL	NULL	-	no_errors
