Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU
ADAMTS5	11096	genome.wustl.edu	37	21	28306783	28306783	+	Splice_Site	SNP	A	A	T	novel	unknown	TCGA-BH-A1EO-01A-11D-A135-09	TCGA-BH-A1EO-11A-31D-A135-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	28306783	28306783	A	T	SNP	ADAMTS5	NM_007038	human	genbank	57_37b	-1	reviewed	splice_site	c.1689+2	e4+2	1.000	-	-	-	no_errors
AKT3	10000	genome.wustl.edu	37	1	243828162	243828162	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1EO-01A-11D-A135-09	TCGA-BH-A1EO-11A-31D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	243828162	243828162	G	A	SNP	AKT3	NM_005465	human	genbank	57_37b	-1	reviewed	nonsense	c.196	p.R66*	1.000	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMSmart_SM00133,HMMPfam_Pkinase_C	-	no_errors
AP2A1	160	genome.wustl.edu	37	19	50302640	50302640	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A1EO-01A-11D-A135-09	TCGA-BH-A1EO-11A-31D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	50302640	50302640	G	C	SNP	AP2A1	NM_014203	human	genbank	57_37b	+1	reviewed	missense	c.1022	p.R341P	1.000	superfamily_ARM repeat,HMMPfam_Adaptin_N	superfamily_ARM repeat,HMMPfam_Adaptin_N,superfamily_Clathrin adaptor appendage domain,HMMPfam_Alpha_adaptinC2,HMMSmart_SM00809,HMMPfam_Alpha_adaptin_C,superfamily_Subdomain of clathrin and coatomer appendage domain	-	no_errors
ARHGEF7	8874	genome.wustl.edu	37	13	111927898	111927898	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1EO-01A-11D-A135-09	TCGA-BH-A1EO-11A-31D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	111927898	111927898	G	A	SNP	ARHGEF7	NM_001113511	human	genbank	57_37b	+1	reviewed	missense	c.1355	p.R452Q	1.000	superfamily_DBL homology domain (DH-domain)	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,HMMSmart_SM00033,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,PatternScan_DH_1,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233	-	no_errors
ARID1A	8289	genome.wustl.edu	37	1	27057934	27057934	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1EO-01A-11D-A135-09	TCGA-BH-A1EO-11A-31D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	27057934	27057934	C	T	SNP	ARID1A	NM_006015	human	genbank	57_37b	+1	reviewed	nonsense	c.1642	p.Q548*	1.000	NULL	superfamily_ARID-like,HMMPfam_ARID,HMMSmart_SM00501	-	no_errors
ASB5	140458	genome.wustl.edu	37	4	177138077	177138077	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-BH-A1EO-01A-11D-A135-09	TCGA-BH-A1EO-11A-31D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	177138077	177138077	G	-	DEL	ASB5	NM_080874	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.754	p.L252fs	1.000	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,HMMPfam_SOCS_box	(deletion:cds_exon[177137969,177138160])	no_errors
C4orf23	152992	genome.wustl.edu	37	4	8469962	8469962	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1EO-01A-11D-A135-09	TCGA-BH-A1EO-11A-31D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	8469962	8469962	C	T	SNP	C4orf23	NM_152544	human	genbank	57_37b	+1	provisional	nonsense	c.640	p.R214*	0.723	NULL	HMMPfam_AdoMet_MTase	-	no_errors
CD1D	912	genome.wustl.edu	37	1	158152850	158152850	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1EO-01A-11D-A135-09	TCGA-BH-A1EO-11A-31D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	158152850	158152850	C	T	SNP	CD1D	NM_001766	human	genbank	57_37b	+1	reviewed	nonsense	c.790	p.R264*	0.138	superfamily_SSF48726,HMMPfam_C1-set,HMMSmart_IGc1	HMMPfam_MHC_I,superfamily_MHC_I/II-like_Ag-recog,superfamily_SSF48726,HMMPfam_C1-set,HMMSmart_IGc1	-	no_errors
CDH7	1005	genome.wustl.edu	37	18	63547856	63547856	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1EO-01A-11D-A135-09	TCGA-BH-A1EO-11A-31D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	63547856	63547856	G	A	SNP	CDH7	NM_004361	human	genbank	57_37b	+1	reviewed	missense	c.2084	p.R695Q	1.000	HMMPfam_Cadherin_C	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_C	-	no_errors
CDK5	1020	genome.wustl.edu	37	7	150752460	150752460	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A1EO-01A-11D-A135-09	TCGA-BH-A1EO-11A-31D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	150752460	150752460	C	A	SNP	CDK5	NM_004935	human	genbank	57_37b	-1	validated	missense	c.484	p.V162L	1.000	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
COL6A1	1291	genome.wustl.edu	37	21	47423509	47423509	+	Missense_Mutation	SNP	C	C	T	rs13051496	byCluster;by1000genomes	TCGA-BH-A1EO-01A-11D-A135-09	TCGA-BH-A1EO-11A-31D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	47423509	47423509	C	T	SNP	COL6A1	NM_001848	human	genbank	57_37b	+1	reviewed	missense	c.2669	p.S890L	0.102	superfamily_SSF53300,HMMSmart_VWA,HMMPfam_VWA	superfamily_SSF53300,HMMSmart_VWA,HMMPfam_VWA,HMMPfam_Collagen	-	
COL6A6	131873	genome.wustl.edu	37	3	130285633	130285633	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1EO-01A-11D-A135-09	TCGA-BH-A1EO-11A-31D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	130285633	130285633	C	T	SNP	COL6A6	NM_001102608	human	genbank	57_37b	+1	provisional	missense	c.1370	p.T457M	0.686	HMMSmart_SM00327,superfamily_vWA-like,HMMPfam_VWA	HMMSmart_SM00327,superfamily_vWA-like,HMMPfam_VWA,HMMPfam_Collagen	-	no_errors
DET1	55070	genome.wustl.edu	37	15	89074906	89074906	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1EO-01A-11D-A135-09	TCGA-BH-A1EO-11A-31D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	89074906	89074906	G	A	SNP	DET1	NM_017996	human	genbank	57_37b	-1	validated	nonsense	c.64	p.R22*	1.000	NULL	HMMPfam_Det1	-	no_errors
DIP2A	23181	genome.wustl.edu	37	21	47974150	47974150	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A1EO-01A-11D-A135-09	TCGA-BH-A1EO-11A-31D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	47974150	47974150	G	A	SNP	DIP2A	NM_015151	human	genbank	57_37b	+1	reviewed	silent	c.3099	p.L1033	1.000	superfamily_Acetyl-CoA synthetase-like,HMMPfam_AMP-binding	HMMPfam_DMAP_binding,superfamily_Acetyl-CoA synthetase-like,HMMPfam_AMP-binding	-	no_errors
DMRTA1	63951	genome.wustl.edu	37	9	22451851	22451851	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BH-A1EO-01A-11D-A135-09	TCGA-BH-A1EO-11A-31D-A135-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	22451851	22451851	A	T	SNP	DMRTA1	NM_022160	human	genbank	57_37b	+1	validated	missense	c.1456	p.S486C	1.000	NULL	superfamily_DM_DNA_bd,HMMPfam_DM,HMMSmart_DM,PatternScan_DM_1,HMMPfam_DMA	-	no_errors
ENSG00000140181	0	genome.wustl.edu	37	15	23300098	23300098	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1EO-01A-11D-A135-09	TCGA-BH-A1EO-11A-31D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	23300098	23300098	C	T	SNP	ENSG00000140181	ENST00000454333	human	ensembl	57_37b	-1	known	missense	c.178	p.E60K	1.000	NULL	NULL	-	no_errors
FANCA	2175	genome.wustl.edu	37	16	89818569	89818569	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1EO-01A-11D-A135-09	TCGA-BH-A1EO-11A-31D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	89818569	89818569	C	T	SNP	FANCA	NM_000135	human	genbank	57_37b	-1	reviewed	missense	c.3043	p.E1015K	0.000	NULL	HMMPfam_Fanconi_A	-	no_errors
FLNC	2318	genome.wustl.edu	37	7	128494721	128494721	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A1EO-01A-11D-A135-09	TCGA-BH-A1EO-11A-31D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	128494721	128494721	G	T	SNP	FLNC	NM_001458	human	genbank	57_37b	+1	reviewed	missense	c.6982	p.V2328L	1.000	HMMPfam_Filamin,superfamily_E set domains,HMMSmart_SM00557	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_SM00033,PatternScan_ACTININ_2,superfamily_E set domains,HMMPfam_Filamin,HMMSmart_SM00557	-	no_errors
GDF15	9518	genome.wustl.edu	37	19	18499151	18499151	+	Silent	SNP	C	C	T	rs1059022	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-BH-A1EO-01A-11D-A135-09	TCGA-BH-A1EO-11A-31D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	18499151	18499151	C	T	SNP	GDF15	NM_004864	human	genbank	57_37b	+1	validated	silent	c.333	p.P111	0.000	NULL	superfamily_Cystine-knot cytokines,HMMPfam_TGF_beta,HMMSmart_SM00204	-	
ITPR1	3708	genome.wustl.edu	37	3	4854831	4854831	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A1EO-01A-11D-A135-09	TCGA-BH-A1EO-11A-31D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	4854831	4854831	G	T	SNP	ITPR1	NM_001099952	human	genbank	57_37b	+1	reviewed	missense	c.7330	p.G2444C	0.110	HMMPfam_Ion_trans	HMMPfam_Ins145_P3_rec,superfamily_MIR domain (Pfam 02815),HMMSmart_SM00472,HMMPfam_MIR,superfamily_IP3 receptor type 1 binding core domain 2,HMMPfam_RYDR_ITPR,HMMPfam_RIH_assoc,HMMPfam_Ion_trans	-	no_errors
KIAA0406	9675	genome.wustl.edu	37	20	36641436	36641436	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-BH-A1EO-01A-11D-A135-09	TCGA-BH-A1EO-11A-31D-A135-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	36641436	36641436	T	A	SNP	KIAA0406	NM_014657	human	genbank	57_37b	-1	predicted	missense	c.783	p.K261N	0.155	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors
KRTAP10-9	386676	genome.wustl.edu	37	21	46047184	46047184	+	Silent	SNP	C	C	T	rs74630528	unknown	TCGA-BH-A1EO-01A-11D-A135-09	TCGA-BH-A1EO-11A-31D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	46047184	46047184	C	T	SNP	KRTAP10-9	NM_198690	human	genbank	57_37b	+1	validated	silent	c.96	p.C32	0.010	HMMPfam_Keratin_B2	HMMPfam_Keratin_B2	-	
LOC148709	148709	genome.wustl.edu	37	1	202843127	202843127	+	RNA	SNP	C	T	T	rs11590469	byCluster;byFrequency;byHapMap;by1000genomes	TCGA-BH-A1EO-01A-11D-A135-09	TCGA-BH-A1EO-11A-31D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	202843127	202843127	C	T	SNP	LOC148709	NR_002929	human	genbank	57_37b	+1	validated	rna	NULL	NULL	1.000	-	-	-	
NAV3	89795	genome.wustl.edu	37	12	78225321	78225321	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A1EO-01A-11D-A135-09	TCGA-BH-A1EO-11A-31D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	78225321	78225321	C	G	SNP	NAV3	NM_014903	human	genbank	57_37b	+1	validated	missense	c.80	p.P27R	1.000	superfamily_Calponin-homology domain CH-domain	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,HMMSmart_SM00033,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382	-	no_errors
NFE2	4778	genome.wustl.edu	37	12	54686775	54686775	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1EO-01A-11D-A135-09	TCGA-BH-A1EO-11A-31D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	54686775	54686775	G	A	SNP	NFE2	NM_001136023	human	genbank	57_37b	-1	provisional	missense	c.505	p.R169C	0.731	NULL	superfamily_A DNA-binding domain in eukaryotic transcription factors,HMMSmart_SM00338,HMMPfam_bZIP_1,PatternScan_BZIP_BASIC	-	no_errors
ODZ1	10178	genome.wustl.edu	37	X	123554340	123554340	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A1EO-01A-11D-A135-09	TCGA-BH-A1EO-11A-31D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	123554340	123554340	G	A	SNP	ODZ1	NM_014253	human	genbank	57_37b	-1	reviewed	silent	c.4782	p.G1594	0.000	superfamily_N2O_reductase_N,HMMPfam_RHS_repeat	HMMPfam_Ten_N,HMMSmart_EGF,HMMPfam_EGF_2,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF,superfamily_SSF57196,superfamily_SSF101898,HMMPfam_NHL,superfamily_N2O_reductase_N,HMMPfam_RHS_repeat	-	no_errors
OR10Q1	219960	genome.wustl.edu	37	11	57995755	57995755	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1EO-01A-11D-A135-09	TCGA-BH-A1EO-11A-31D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	57995755	57995755	C	T	SNP	OR10Q1	NM_001004471	human	genbank	57_37b	-1	validated	missense	c.593	p.R198H	0.000	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
OR51Q1	390061	genome.wustl.edu	37	11	5443900	5443900	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1EO-01A-11D-A135-09	TCGA-BH-A1EO-11A-31D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	5443900	5443900	C	T	SNP	OR51Q1	NM_001004757	human	genbank	57_37b	+1	validated	missense	c.470	p.A157V	0.078	superfamily_SSF81321,HMMPfam_7tm_1	PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1	-	no_errors
PLEKHM1	9842	genome.wustl.edu	37	17	43531287	43531287	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1EO-01A-11D-A135-09	TCGA-BH-A1EO-11A-31D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	43531287	43531287	G	A	SNP	PLEKHM1	NM_014798	human	genbank	57_37b	-1	reviewed	missense	c.1931	p.P644L	0.000	NULL	PatternScan_ZF_DAG_PE_1,HMMPfam_RUN,HMMSmart_RUN,superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,HMMSmart_C1	-	no_errors
PNMA1	9240	genome.wustl.edu	37	14	74179741	74179741	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1EO-01A-11D-A135-09	TCGA-BH-A1EO-11A-31D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	74179741	74179741	C	T	SNP	PNMA1	NM_006029	human	genbank	57_37b	-1	validated	missense	c.602	p.R201Q	0.998	NULL	NULL	-	no_errors
POLR3B	55703	genome.wustl.edu	37	12	106850925	106850925	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1EO-01A-11D-A135-09	TCGA-BH-A1EO-11A-31D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	106850925	106850925	G	A	SNP	POLR3B	NM_018082	human	genbank	57_37b	+1	validated	missense	c.2303	p.R768H	1.000	superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase,HMMPfam_RNA_pol_Rpb2_6	superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase,HMMPfam_RNA_pol_Rpb2_1,HMMPfam_RNA_pol_Rpb2_2,HMMPfam_RNA_pol_Rpb2_3,HMMPfam_RNA_pol_Rpb2_4,HMMPfam_RNA_pol_Rpb2_5,HMMPfam_RNA_pol_Rpb2_6,PatternScan_RNA_POL_BETA,HMMPfam_RNA_pol_Rpb2_7	-	no_errors
RUFY1	80230	genome.wustl.edu	37	5	178994480	178994481	+	Frame_Shift_Ins	INS	-	-	CGAG	novel	unknown	TCGA-BH-A1EO-01A-11D-A135-09	TCGA-BH-A1EO-11A-31D-A135-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	178994480	178994481	-	CGAG	INS	RUFY1	NM_025158	human	genbank	57_37b	+1	validated	frame_shift_ins	c.621_622	p.W209fs	0.998:0.998	HMMPfam_RUN,HMMSmart_SM00593	HMMPfam_RUN,HMMSmart_SM00593,HMMSmart_SM00064,HMMPfam_FYVE,superfamily_FYVE/PHD zinc finger	-	no_errors
SLC38A10	124565	genome.wustl.edu	37	17	79219501	79219503	+	In_Frame_Del	DEL	ATG	ATG	-	novel	unknown	TCGA-BH-A1EO-01A-11D-A135-09	TCGA-BH-A1EO-11A-31D-A135-09	ATG	ATG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	79219501	79219503	ATG	-	DEL	SLC38A10	NM_001037984	human	genbank	57_37b	-1	validated	in_frame_del	c.3215_3213	p.I1072in_frame_del	0.113:0.154:0.221	NULL	HMMPfam_Aa_trans	(deletion:cds_exon[79219356,79220473])	no_errors
SLC6A7	6534	genome.wustl.edu	37	5	149588999	149588999	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1EO-01A-11D-A135-09	TCGA-BH-A1EO-11A-31D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	149588999	149588999	G	A	SNP	SLC6A7	NM_014228	human	genbank	57_37b	+1	validated	missense	c.1732	p.D578N	1.000	NULL	HMMPfam_SNF,PatternScan_NA_NEUROTRAN_SYMP_1,PatternScan_NA_NEUROTRAN_SYMP_2	-	no_errors
TEX13A	56157	genome.wustl.edu	37	X	104464131	104464131	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1EO-01A-11D-A135-09	TCGA-BH-A1EO-11A-31D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	104464131	104464131	G	A	SNP	TEX13A	ENST00000413579	human	ensembl	57_37b	-1	known	missense	c.745	p.L249F	0.000	NULL	superfamily_SSF90209,HMMPfam_zf-RanBP,HMMSmart_ZnF_RBZ,PatternScan_ZF_RANBP2_1	-	no_errors
TMPRSS2	7113	genome.wustl.edu	37	21	42845374	42845374	+	Silent	SNP	G	G	A	rs2298659	byCluster;byFrequency;by1000genomes	TCGA-BH-A1EO-01A-11D-A135-09	TCGA-BH-A1EO-11A-31D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	42845374	42845374	G	A	SNP	TMPRSS2	NM_005656	human	genbank	57_37b	-1	reviewed	silent	c.777	p.G259	0.000	superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin	superfamily_LDL receptor-like module,HMMSmart_SM00192,PatternScan_LDLRA_1,superfamily_SRCR-like,HMMSmart_SM00202,HMMPfam_SRCR,superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	
TSPAN17	26262	genome.wustl.edu	37	5	176078754	176078754	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-BH-A1EO-01A-11D-A135-09	TCGA-BH-A1EO-11A-31D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	176078754	176078754	G	A	SNP	TSPAN17	NM_012171	human	genbank	57_37b	+1	validated	splice_site	c.139-1	e3-1	1.000	-	-	-	no_errors
TYK2	7297	genome.wustl.edu	37	19	10475348	10475348	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1EO-01A-11D-A135-09	TCGA-BH-A1EO-11A-31D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	10475348	10475348	C	T	SNP	TYK2	NM_003331	human	genbank	57_37b	-1	reviewed	missense	c.1309	p.E437K	0.986	NULL	PatternScan_FERM_1,PatternScan_FERM_2,HMMSmart_B41,superfamily_SSF55550,HMMSmart_SH2,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR	-	no_errors
UTP15	84135	genome.wustl.edu	37	5	72866470	72866470	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1EO-01A-11D-A135-09	TCGA-BH-A1EO-11A-31D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	72866470	72866470	G	A	SNP	UTP15	NM_032175	human	genbank	57_37b	+1	validated	missense	c.607	p.V203I	1.000	superfamily_WD40 repeat-like,HMMPfam_WD40,HMMSmart_SM00320	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1,HMMPfam_U3_snoRNA_C	-	no_errors
ZNF577	84765	genome.wustl.edu	37	19	52381767	52381767	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A1EO-01A-11D-A135-09	TCGA-BH-A1EO-11A-31D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	52381767	52381767	C	A	SNP	ZNF577	NM_032679	human	genbank	57_37b	-1	validated	missense	c.62	p.G21V	0.000	superfamily_KRAB domain (Kruppel-associated box Pfam 01352)	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
ZNF831	128611	genome.wustl.edu	37	20	57782030	57782030	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1EO-01A-11D-A135-09	TCGA-BH-A1EO-11A-31D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	57782030	57782030	C	T	SNP	ZNF831	NM_178457	human	genbank	57_37b	+1	provisional	nonsense	c.3946	p.R1316*	0.005	NULL	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
