Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU
ACTA1	58	genome.wustl.edu	37	1	229567787	229567787	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A1ET-01A-11D-A135-09	TCGA-BH-A1ET-11B-23D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	229567787	229567787	G	T	SNP	ACTA1	NM_001100	human	genbank	57_37b	-1	reviewed	missense	c.762	p.N254K	1.000	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain	superfamily_Actin-like ATPase domain,HMMPfam_Actin,HMMSmart_SM00268,PatternScan_ACTINS_1,PatternScan_ACTINS_ACT_LIKE,PatternScan_ACTINS_2	-	no_errors
AMAC1L2	83650	genome.wustl.edu	37	8	11188822	11188822	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A1ET-01A-11D-A135-09	TCGA-BH-A1ET-11B-23D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	11188822	11188822	G	A	SNP	AMAC1L2	NM_054028	human	genbank	57_37b	+1	reviewed	silent	c.207	p.S69	1.000	HMMPfam_DUF6	HMMPfam_DUF6,superfamily_SSF103481	-	no_errors
C12orf51	283450	genome.wustl.edu	37	12	112687979	112687979	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1ET-01A-11D-A135-09	TCGA-BH-A1ET-11B-23D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	112687979	112687979	G	A	SNP	C12orf51	NM_001109662	human	genbank	57_37b	-1	provisional	missense	c.2653	p.R885C	1.000	NULL	superfamily_Hect E3 ligase catalytic domain,HMMSmart_SM00119,HMMPfam_HECT	-	no_errors
DUSP6	1848	genome.wustl.edu	37	12	89744753	89744753	+	Silent	SNP	A	A	G	novel	unknown	TCGA-BH-A1ET-01A-11D-A135-09	TCGA-BH-A1ET-11B-23D-A135-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	89744753	89744753	A	G	SNP	DUSP6	NM_001946	human	genbank	57_37b	-1	reviewed	silent	c.450	p.N150	1.000	superfamily_Rhodanese/Cell cycle control phosphatase	superfamily_Rhodanese/Cell cycle control phosphatase,HMMPfam_Rhodanese,HMMSmart_SM00450,superfamily_(Phosphotyrosine protein) phosphatases II,HMMPfam_DSPc,HMMSmart_SM00195	-	no_errors
ELMOD1	55531	genome.wustl.edu	37	11	107518302	107518302	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A1ET-01A-11D-A135-09	TCGA-BH-A1ET-11B-23D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	107518302	107518302	G	C	SNP	ELMOD1	NM_018712	human	genbank	57_37b	+1	validated	missense	c.529	p.G177R	1.000	HMMPfam_ELMO_CED12	HMMPfam_ELMO_CED12	-	no_errors
ENSG00000168738	0	genome.wustl.edu	37	18	10855367	10855367	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A1ET-01A-11D-A135-09	TCGA-BH-A1ET-11B-23D-A135-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	10855367	10855367	T	C	SNP	ENSG00000168738	ENST00000302079	human	ensembl	57_37b	-1	known	missense	c.517	p.N173D	0.206	NULL	NULL	-	no_errors
ENSG00000246198	0	genome.wustl.edu	37	12	110811920	110811920	+	RNA	SNP	G	G	A	novel	unknown	TCGA-BH-A1ET-01A-11D-A135-09	TCGA-BH-A1ET-11B-23D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	110811920	110811920	G	A	SNP	ENSG00000246198	ENST00000500548	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.918	-	-	-	no_errors
ENSG00000248034	0	genome.wustl.edu	37	2	88857216	88857216	+	RNA	SNP	T	T	C	novel	unknown	TCGA-BH-A1ET-01A-11D-A135-09	TCGA-BH-A1ET-11B-23D-A135-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	88857216	88857216	T	C	SNP	ENSG00000248034	ENST00000501987	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.000	-	-	-	no_errors
FAM160A1	729830	genome.wustl.edu	37	4	152571037	152571037	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-BH-A1ET-01A-11D-A135-09	TCGA-BH-A1ET-11B-23D-A135-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	152571037	152571037	A	C	SNP	FAM160A1	NM_001109977	human	genbank	57_37b	+1	predicted	missense	c.1844	p.K615T	0.099	NULL	HMMPfam_RAI16-like	-	no_errors
FER1L6	654463	genome.wustl.edu	37	8	125047696	125047696	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-BH-A1ET-01A-11D-A135-09	TCGA-BH-A1ET-11B-23D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	125047696	125047696	G	A	SNP	FER1L6	NM_001039112	human	genbank	57_37b	+1	validated	splice_site	c.2464+1	e18+1	1.000	-	-	-	no_errors
FER1L6	654463	genome.wustl.edu	37	8	125076805	125076805	+	Silent	SNP	A	A	G	novel	unknown	TCGA-BH-A1ET-01A-11D-A135-09	TCGA-BH-A1ET-11B-23D-A135-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	125076805	125076805	A	G	SNP	FER1L6	NM_001039112	human	genbank	57_37b	+1	validated	silent	c.3546	p.G1182	0.000	NULL	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2,HMMPfam_FerI,HMMPfam_FerB	-	no_errors
GPR63	81491	genome.wustl.edu	37	6	97247418	97247418	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A1ET-01A-11D-A135-09	TCGA-BH-A1ET-11B-23D-A135-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	97247418	97247418	T	C	SNP	GPR63	NM_001143957	human	genbank	57_37b	-1	validated	missense	c.190	p.T64A	1.000	superfamily_Family A G protein-coupled receptor-like	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	-	no_errors
HIF3A	64344	genome.wustl.edu	37	19	46815779	46815779	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A1ET-01A-11D-A135-09	TCGA-BH-A1ET-11B-23D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	46815779	46815779	G	A	SNP	HIF3A	NM_152795	human	genbank	57_37b	+1	reviewed	silent	c.894	p.Q298	1.000	superfamily_PYP-like sensor domain (PAS domain),HMMPfam_PAS_3	superfamily_HLH helix-loop-helix DNA-binding domain,HMMSmart_SM00353,HMMSmart_SM00091,superfamily_PYP-like sensor domain (PAS domain),HMMPfam_PAS,HMMPfam_PAS_3,HMMSmart_SM00086	-	no_errors
INHBE	83729	genome.wustl.edu	37	12	57849486	57849486	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-BH-A1ET-01A-11D-A135-09	TCGA-BH-A1ET-11B-23D-A135-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	57849486	57849486	A	C	SNP	INHBE	NM_031479	human	genbank	57_37b	+1	validated	missense	c.167	p.H56P	0.997	NULL	superfamily_SSF57501,HMMPfam_TGF_beta,HMMSmart_TGFB,PatternScan_TGF_BETA_1	-	no_errors
ITLN1	55600	genome.wustl.edu	37	1	160850420	160850420	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1ET-01A-11D-A135-09	TCGA-BH-A1ET-11B-23D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	160850420	160850420	C	T	SNP	ITLN1	NM_017625	human	genbank	57_37b	-1	validated	missense	c.643	p.D215N	0.962	superfamily_Fibrinogen C-terminal domain-like	superfamily_Fibrinogen C-terminal domain-like	-	no_errors
KDM2A	22992	genome.wustl.edu	37	11	67010479	67010479	+	Splice_Site	SNP	G	G	T	novel	unknown	TCGA-BH-A1ET-01A-11D-A135-09	TCGA-BH-A1ET-11B-23D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	67010479	67010479	G	T	SNP	KDM2A	NM_012308	human	genbank	57_37b	+1	reviewed	splice_site	c.1480-1	e12-1	0.999	-	-	-	no_errors
LRIG1	26018	genome.wustl.edu	37	3	66431242	66431242	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A1ET-01A-11D-A135-09	TCGA-BH-A1ET-11B-23D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	66431242	66431242	C	T	SNP	LRIG1	NM_015541	human	genbank	57_37b	-1	validated	silent	c.2814	p.V938	0.001	NULL	HMMPfam_LRRNT,HMMSmart_SM00013,superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00365,HMMSmart_SM00082,HMMPfam_LRRCT,HMMPfam_I-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408	-	no_errors
MTPAP	55149	genome.wustl.edu	37	10	30602780	30602780	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1ET-01A-11D-A135-09	TCGA-BH-A1ET-11B-23D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	30602780	30602780	G	A	SNP	MTPAP	NM_018109	human	genbank	57_37b	-1	validated	nonsense	c.1507	p.R503*	0.999	superfamily_PAP/OAS1 substrate-binding domain	superfamily_Nucleotidyltransferase,superfamily_PAP/OAS1 substrate-binding domain,HMMPfam_PAP_assoc	-	no_errors
MYH2	4620	genome.wustl.edu	37	17	10436640	10436640	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A1ET-01A-11D-A135-09	TCGA-BH-A1ET-11B-23D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	10436640	10436640	G	T	SNP	MYH2	NM_001100112	human	genbank	57_37b	-1	reviewed	missense	c.2403	p.F801L	1.000	superfamily_SSF52540,HMMSmart_IQ,HMMPfam_IQ	HMMPfam_Myosin_N,superfamily_SSF52540,HMMSmart_MYSc,HMMPfam_Myosin_head,HMMSmart_IQ,HMMPfam_IQ,HMMPfam_Myosin_tail_1	-	no_errors
NEDD9	4739	genome.wustl.edu	37	6	11191135	11191135	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1ET-01A-11D-A135-09	TCGA-BH-A1ET-11B-23D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	11191135	11191135	C	T	SNP	NEDD9	NM_001142393	human	genbank	57_37b	-1	validated	missense	c.967	p.V323I	0.603	NULL	superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,HMMPfam_Serine_rich	-	no_errors
PCDHB6	56130	genome.wustl.edu	37	5	140532071	140532071	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A1ET-01A-11D-A135-09	TCGA-BH-A1ET-11B-23D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140532071	140532071	C	A	SNP	PCDHB6	NM_018939	human	genbank	57_37b	+1	reviewed	missense	c.2233	p.Q745K	0.965	NULL	HMMPfam_Cadherin_2,superfamily_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors
PIK3CA	5290	genome.wustl.edu	37	3	178936082	178936082	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1ET-01A-11D-A135-09	TCGA-BH-A1ET-11B-23D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	178936082	178936082	G	A	SNP	PIK3CA	NM_006218	human	genbank	57_37b	+1	reviewed	missense	c.1624	p.E542K	1.000	superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors
PRKDC	5591	genome.wustl.edu	37	8	48743255	48743255	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1ET-01A-11D-A135-09	TCGA-BH-A1ET-11B-23D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	48743255	48743255	C	T	SNP	PRKDC	ENST00000314191	human	ensembl	57_37b	-1	known	missense	c.8305	p.V2769I	0.995	superfamily_ARM repeat	superfamily_ARM repeat,HMMPfam_HEAT,HMMPfam_NUC194,HMMPfam_FAT,superfamily_Protein kinase-like (PK-like),HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,HMMPfam_FATC	-	no_errors
SDK1	221935	genome.wustl.edu	37	7	4308309	4308309	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-BH-A1ET-01A-11D-A135-09	TCGA-BH-A1ET-11B-23D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	4308309	4308309	G	A	SNP	SDK1	ENST00000320140	human	ensembl	57_37b	+1	known	splice_site	c.1968-1	e17-1	0.004	-	-	-	no_errors
SOX14	8403	genome.wustl.edu	37	3	137483952	137483952	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1ET-01A-11D-A135-09	TCGA-BH-A1ET-11B-23D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	137483952	137483952	G	A	SNP	SOX14	NM_004189	human	genbank	57_37b	+1	reviewed	missense	c.326	p.G109D	1.000	NULL	superfamily_HMG-box,HMMSmart_SM00398,HMMPfam_HMG_box	-	no_errors
TTLL8	164714	genome.wustl.edu	37	22	50471725	50471733	+	In_Frame_Del	DEL	GGAACCACT	GGAACCACT	-	novel	unknown	TCGA-BH-A1ET-01A-11D-A135-09	TCGA-BH-A1ET-11B-23D-A135-09	GGAACCACT	GGAACCACT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	50471725	50471733	GGAACCACT	-	DEL	TTLL8	NM_001080447	human	genbank	57_37b	-1	provisional	in_frame_del	c.1189_1181	p.QWF394in_frame_del	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	HMMPfam_TTL,superfamily_Glutathione synthetase ATP-binding domain-like	HMMPfam_TTL,superfamily_Glutathione synthetase ATP-binding domain-like	(deletion:cds_exon[50471631,50471874])	no_errors
UCP3	7352	genome.wustl.edu	37	11	73717218	73717218	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A1ET-01A-11D-A135-09	TCGA-BH-A1ET-11B-23D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	73717218	73717218	C	T	SNP	UCP3	NM_003356	human	genbank	57_37b	-1	reviewed	silent	c.333	p.A111	0.000	superfamily_Mitochondrial carrier	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr	-	no_errors
WIT1	51352	genome.wustl.edu	37	11	32460227	32460227	+	RNA	SNP	C	C	T	rs7120686	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-BH-A1ET-01A-11D-A135-09	TCGA-BH-A1ET-11B-23D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	32460227	32460227	C	T	SNP	WIT1	NR_023920	human	genbank	57_37b	+1	validated	rna	NULL	NULL	0.001	-	-	-	
