Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU
ADHFE1	137872	genome.wustl.edu	37	8	67356944	67356944	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1EU-01A-11D-A135-09	TCGA-BH-A1EU-11A-23D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	67356944	67356944	C	T	SNP	ADHFE1	NM_144650	human	genbank	57_37b	+1	validated	missense	c.314	p.T105M	1.000	superfamily_Dehydroquinate synthase-like,HMMPfam_Fe-ADH	superfamily_Dehydroquinate synthase-like,HMMPfam_Fe-ADH	-	no_errors
AGGF1	55109	genome.wustl.edu	37	5	76358903	76358903	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-BH-A1EU-01A-11D-A135-09	TCGA-BH-A1EU-11A-23D-A135-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	76358903	76358903	T	G	SNP	AGGF1	NM_018046	human	genbank	57_37b	+1	validated	missense	c.1971	p.H657Q	1.000	HMMSmart_SM00443,HMMPfam_G-patch	superfamily_SMAD/FHA domain,HMMSmart_SM00240,HMMPfam_FHA,HMMSmart_SM00443,HMMPfam_G-patch	-	no_errors
AP4M1	9179	genome.wustl.edu	37	7	99700554	99700554	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A1EU-01A-11D-A135-09	TCGA-BH-A1EU-11A-23D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	99700554	99700554	C	G	SNP	AP4M1	NM_004722	human	genbank	57_37b	+1	reviewed	missense	c.322	p.L108V	0.998	HMMPfam_Clat_adaptor_s,superfamily_Longin_like	PatternScan_CLAT_ADAPTOR_M_1,HMMPfam_Clat_adaptor_s,superfamily_Longin_like,HMMPfam_Adap_comp_sub,superfamily_AP50,PatternScan_CLAT_ADAPTOR_M_2	-	no_errors
CAD	790	genome.wustl.edu	37	2	27460602	27460602	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A1EU-01A-11D-A135-09	TCGA-BH-A1EU-11A-23D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	27460602	27460602	C	A	SNP	CAD	NM_004341	human	genbank	57_37b	+1	reviewed	missense	c.4580	p.A1527D	1.000	superfamily_SSF51556	superfamily_CP_synthsmall,HMMPfam_CPSase_sm_chain,superfamily_SSF52317,HMMPfam_GATase,superfamily_PreATP-grasp-like,HMMPfam_CPSase_L_chain,HMMPfam_CPSase_L_D2,superfamily_SSF56059,PatternScan_CPSASE_1,PatternScan_CPSASE_2,superfamily_CarbamoylP_synth_lsu_oligo,HMMPfam_CPSase_L_D3,superfamily_SSF52335,HMMPfam_MGS,HMMPfam_Amidohydro_1,superfamily_SSF51556,PatternScan_DIHYDROOROTASE_1,PatternScan_DIHYDROOROTASE_2,superfamily_Metalo_hydrolase,superfamily_Asp/Orn_carbamoyltranf,HMMPfam_OTCace_N,PatternScan_CARBAMOYLTRANSFERASE,HMMPfam_OTCace	-	no_errors
CCR3	1232	genome.wustl.edu	37	3	46307328	46307328	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-BH-A1EU-01A-11D-A135-09	TCGA-BH-A1EU-11A-23D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	46307328	46307328	C	-	DEL	CCR3	NM_001837	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.679	p.L227fs	0.884	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	(deletion:cds_exon[46306650,46307717])	no_errors
DPEP1	1800	genome.wustl.edu	37	16	89696849	89696849	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A1EU-01A-11D-A135-09	TCGA-BH-A1EU-11A-23D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	89696849	89696849	G	T	SNP	DPEP1	NM_001128141	human	genbank	57_37b	+1	validated	missense	c.31	p.V11L	0.949	NULL	superfamily_SSF51556,HMMPfam_Peptidase_M19,PatternScan_RENAL_DIPEPTIDASE_1	-	no_errors
ENSG00000183199	0	genome.wustl.edu	37	4	88813271	88813272	+	In_Frame_Ins	INS	-	-	ATT	novel	unknown	TCGA-BH-A1EU-01A-11D-A135-09	TCGA-BH-A1EU-11A-23D-A135-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	88813271	88813272	-	ATT	INS	ENSG00000183199	ENST00000327934	human	ensembl	57_37b	+1	known	in_frame_ins	c.277_278	p.M93in_frame_insNL	1.000:1.000	superfamily_ATP_bd_ATPase,HMMPfam_HATPase_c,HMMSmart_HATPase_c	superfamily_ATP_bd_ATPase,HMMPfam_HATPase_c,HMMSmart_HATPase_c,HMMPfam_HSP90,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_SSF110942	-	no_errors
FLG	2312	genome.wustl.edu	37	1	152276139	152276139	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A1EU-01A-11D-A135-09	TCGA-BH-A1EU-11A-23D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	152276139	152276139	C	T	SNP	FLG	NM_002016	human	genbank	57_37b	-1	reviewed	silent	c.11223	p.Q3741	0.009	NULL	superfamily_SSF47473,HMMPfam_S_100,PatternScan_S100_CABP,PatternScan_EF_HAND_1,HMMPfam_Filaggrin	-	no_errors
FLNB	2317	genome.wustl.edu	37	3	58097580	58097582	+	In_Frame_Del	DEL	GGC	GGC	-	novel	unknown	TCGA-BH-A1EU-01A-11D-A135-09	TCGA-BH-A1EU-11A-23D-A135-09	GGC	GGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	58097580	58097582	GGC	-	DEL	FLNB	NM_001457	human	genbank	57_37b	+1	reviewed	in_frame_del	c.2547_2549	p.A850in_frame_del	1.000:1.000:1.000	superfamily_Ig_E-set,HMMPfam_Filamin,HMMSmart_IG_FLMN	superfamily_Calponin-homology,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_CH,PatternScan_ACTININ_2,superfamily_Ig_E-set,HMMPfam_Filamin,HMMSmart_IG_FLMN	(deletion:cds_exon[58097518,58097608])	no_errors
GAS2L1	10634	genome.wustl.edu	37	22	29706530	29706530	+	Silent	SNP	T	T	C	novel	unknown	TCGA-BH-A1EU-01A-11D-A135-09	TCGA-BH-A1EU-11A-23D-A135-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	29706530	29706530	T	C	SNP	GAS2L1	NM_152237	human	genbank	57_37b	+1	reviewed	silent	c.735	p.F245	0.989	HMMPfam_GAS2,HMMSmart_GAS2	superfamily_Calponin-homology,HMMPfam_CH,HMMSmart_CH,HMMPfam_GAS2,HMMSmart_GAS2	-	no_errors
GRIK4	2900	genome.wustl.edu	37	11	120833362	120833362	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A1EU-01A-11D-A135-09	TCGA-BH-A1EU-11A-23D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	120833362	120833362	C	T	SNP	GRIK4	NM_014619	human	genbank	57_37b	+1	reviewed	silent	c.2238	p.T746	1.000	HMMSmart_PBPe,superfamily_SSF53850,HMMPfam_Lig_chan	superfamily_SSF53822,HMMPfam_ANF_receptor,HMMSmart_PBPe,superfamily_SSF53850,HMMPfam_Lig_chan-Glu_bd,HMMPfam_Lig_chan	-	no_errors
KIAA1109	84162	genome.wustl.edu	37	4	123156157	123156157	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1EU-01A-11D-A135-09	TCGA-BH-A1EU-11A-23D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	123156157	123156157	G	A	SNP	KIAA1109	NM_015312	human	genbank	57_37b	+1	reviewed	missense	c.3553	p.E1185K	1.000	NULL	PatternScan_ASP_PROTEASE,HMMPfam_FSA_C	-	no_errors
KPNA4	3840	genome.wustl.edu	37	3	160283041	160283041	+	Silent	SNP	T	T	C	novel	unknown	TCGA-BH-A1EU-01A-11D-A135-09	TCGA-BH-A1EU-11A-23D-A135-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	160283041	160283041	T	C	SNP	KPNA4	NM_002268	human	genbank	57_37b	-1	reviewed	silent	c.30	p.Q10	1.000	HMMPfam_IBB	HMMPfam_IBB,superfamily_ARM repeat,HMMPfam_Arm,HMMSmart_SM00185	-	no_errors
MFSD8	256471	genome.wustl.edu	37	4	128854182	128854182	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A1EU-01A-11D-A135-09	TCGA-BH-A1EU-11A-23D-A135-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	128854182	128854182	A	G	SNP	MFSD8	NM_152778	human	genbank	57_37b	-1	reviewed	missense	c.821	p.V274A	0.929	superfamily_MFS_gen_substrate_transporter,HMMPfam_MFS_1	superfamily_MFS_gen_substrate_transporter,HMMPfam_MFS_1	-	no_errors
MUSK	4593	genome.wustl.edu	37	9	113563026	113563026	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1EU-01A-11D-A135-09	TCGA-BH-A1EU-11A-23D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	113563026	113563026	G	A	SNP	MUSK	NM_005592	human	genbank	57_37b	+1	reviewed	missense	c.2368	p.V790M	1.000	superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220	PatternScan_TUBULIN_B_AUTOREG,superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_Fz,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR	-	no_errors
PABPC3	5042	genome.wustl.edu	37	13	25670833	25670833	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1EU-01A-11D-A135-09	TCGA-BH-A1EU-11A-23D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	25670833	25670833	G	A	SNP	PABPC3	NM_030979	human	genbank	57_37b	+1	validated	missense	c.497	p.R166H	1.000	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMSmart_SM00361,HMMPfam_RRM_1	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1,HMMSmart_SM00361,superfamily_PABC (PABP) domain,HMMPfam_PABP,HMMSmart_SM00517	-	no_errors
PDE9A	5152	genome.wustl.edu	37	21	44182234	44182234	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A1EU-01A-11D-A135-09	TCGA-BH-A1EU-11A-23D-A135-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	44182234	44182234	A	G	SNP	PDE9A	NM_002606	human	genbank	57_37b	+1	reviewed	missense	c.1127	p.N376S	1.000	superfamily_HD-domain/PDEase-like,HMMSmart_SM00471,HMMPfam_PDEase_I	superfamily_HD-domain/PDEase-like,HMMSmart_SM00471,HMMPfam_PDEase_I,PatternScan_PDEASE_I	-	no_errors
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	T			TCGA-BH-A1EU-01A-11D-A135-09	TCGA-BH-A1EU-11A-23D-A135-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	178952085	178952085	A	T	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.3140	p.H1047L	1.000	HMMSmart_PI3Kc,superfamily_Kinase_like	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
PNMA2	10687	genome.wustl.edu	37	8	26365461	26365461	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1EU-01A-11D-A135-09	TCGA-BH-A1EU-11A-23D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	26365461	26365461	G	A	SNP	PNMA2	NM_007257	human	genbank	57_37b	-1	validated	missense	c.811	p.R271W	0.023	HMMPfam_Retrotrans_gag	HMMPfam_Retrotrans_gag	-	no_errors
PPP3CA	5530	genome.wustl.edu	37	4	102117231	102117231	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A1EU-01A-11D-A135-09	TCGA-BH-A1EU-11A-23D-A135-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	102117231	102117231	A	G	SNP	PPP3CA	NM_000944	human	genbank	57_37b	-1	validated	missense	c.101	p.V34A	1.000	superfamily_Metallo-dependent phosphatases	superfamily_Metallo-dependent phosphatases,HMMSmart_SM00156,HMMPfam_Metallophos,PatternScan_SER_THR_PHOSPHATASE	-	no_errors
TLR9	54106	genome.wustl.edu	37	3	52257592	52257592	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1EU-01A-11D-A135-09	TCGA-BH-A1EU-11A-23D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	52257592	52257592	C	T	SNP	TLR9	NM_017442	human	genbank	57_37b	-1	reviewed	missense	c.740	p.R247H	0.011	superfamily_L domain-like	superfamily_L domain-like,HMMSmart_SM00369,HMMSmart_SM00365,HMMPfam_LRR_1,HMMSmart_SM00364,superfamily_Toll/Interleukin receptor TIR domain,HMMSmart_SM00255,HMMPfam_TIR	-	no_errors
TYR	7299	genome.wustl.edu	37	11	89018003	89018003	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1EU-01A-11D-A135-09	TCGA-BH-A1EU-11A-23D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	89018003	89018003	C	T	SNP	TYR	NM_000372	human	genbank	57_37b	+1	reviewed	missense	c.1247	p.A416V	1.000	superfamily_Di-copper centre-containing domain	superfamily_Di-copper centre-containing domain,PatternScan_EGF_1,PatternScan_EGF_LAM_1,HMMPfam_Tyrosinase,PatternScan_TYROSINASE_1,PatternScan_TYROSINASE_2	-	no_errors
ZNF653	115950	genome.wustl.edu	37	19	11598576	11598576	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A1EU-01A-11D-A135-09	TCGA-BH-A1EU-11A-23D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	11598576	11598576	G	A	SNP	ZNF653	NM_138783	human	genbank	57_37b	-1	validated	silent	c.702	p.S234	0.997	NULL	HMMSmart_AT_hook,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_SSF57667	-	no_errors
