Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
MST1P2	11209	broad.mit.edu	37	1	16974187	16974187	+	RNA	SNP	A	T	T	rs145000535	by1000genomes	TCGA-BJ-A0Z5-01A-11D-A10S-08	TCGA-BJ-A0Z5-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ed76717-6eda-4f72-83ef-bce453ff5494	da7913e4-850f-4e20-9727-38a8aa7160c7	g.chr1:16974187A>T	uc009vow.2	+	5		c.997A>T			MST1P2_uc010ocg.1_RNA|MST1P2_uc010och.1_Intron|MST1P2_uc010oci.1_RNA|MST1P2_uc001azk.2_Intron|MST1P2_uc001azl.3_RNA|MST1P2_uc009vox.2_Intron|MST1P2_uc001azm.3_Intron					Homo sapiens cDNA FLJ53774 complete cds, moderately similar to Hepatocyte growth factor-like protein precursor.												0						TATCCCGTGGAGTACCGTACA	0.667000													4	16					0	0	1	0	0
PRPF38B	55119	broad.mit.edu	37	1	109238364	109238364	+	Missense_Mutation	SNP	C	T	T			TCGA-BJ-A0Z5-01A-11D-A10S-08	TCGA-BJ-A0Z5-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ed76717-6eda-4f72-83ef-bce453ff5494	da7913e4-850f-4e20-9727-38a8aa7160c7	g.chr1:109238364C>T	uc001dvv.3	+	2	599	c.317C>T	c.(316-318)ACA>ATA	p.T106I	PRPF38B_uc001dvw.3_5'UTR|PRPF38B_uc010ouz.1_5'UTR	NM_018061	NP_060531	Q5VTL8	PR38B_HUMAN	PRP38 pre-mRNA processing factor 38 (yeast)	106					mRNA processing|RNA splicing	spliceosomal complex					0		all_epithelial(167;0.000154)|all_lung(203;0.00026)|Lung NSC(277;0.000508)		Colorectal(144;0.0149)|Lung(183;0.0888)|COAD - Colon adenocarcinoma(174;0.113)|Epithelial(280;0.161)		AGCAGGAAAACAGCGGGCCAG	0.403000													14	50					0	0	1	0	0
ZNF365	22891	broad.mit.edu	37	10	64135955	64135955	+	Missense_Mutation	SNP	G	T	T			TCGA-BJ-A0Z5-01A-11D-A10S-08	TCGA-BJ-A0Z5-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ed76717-6eda-4f72-83ef-bce453ff5494	da7913e4-850f-4e20-9727-38a8aa7160c7	g.chr10:64135955G>T	uc001jmc.2	+	2	318	c.3G>T	c.(1-3)ATG>ATT	p.M1I	ZNF365_uc001jly.3_Missense_Mutation_p.M16I|ZNF365_uc001jmb.3_Missense_Mutation_p.M1I|ZNF365_uc001jlz.3_Missense_Mutation_p.M1I|ZNF365_uc001jma.3_Intron	NM_199451	NP_955523	Q70YC4	TALAN_HUMAN	zinc finger protein 365 isoform C	Error:Variant_position_missing_in_Q70YC4_after_alignment										ovary(1)|skin(1)	2	Prostate(12;0.0297)|all_hematologic(501;0.228)					TTAGAGTAATGCAACAGAAGG	0.478000													14	192					2.61681e-11	2.74766e-11	1	1	0
CTNND1	1500	broad.mit.edu	37	11	57575925	57575925	+	Silent	SNP	C	T	T			TCGA-BJ-A0Z5-01A-11D-A10S-08	TCGA-BJ-A0Z5-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ed76717-6eda-4f72-83ef-bce453ff5494	da7913e4-850f-4e20-9727-38a8aa7160c7	g.chr11:57575925C>T	uc001nmc.3	+	14	2726	c.2155C>T	c.(2155-2157)CTG>TTG	p.L719L	CTNND1_uc001nlh.1_Silent_p.L719L|CTNND1_uc001nlu.3_Silent_p.L612L|CTNND1_uc001nlt.3_Silent_p.L612L|CTNND1_uc001nls.3_Silent_p.L612L|CTNND1_uc001nlw.3_Silent_p.L612L|CTNND1_uc001nmf.3_Silent_p.L719L|CTNND1_uc001nmd.3_Silent_p.L665L|CTNND1_uc001nlk.3_Silent_p.L665L|CTNND1_uc001nme.3_Silent_p.L713L|CTNND1_uc001nll.3_Silent_p.L659L|CTNND1_uc001nmg.3_Silent_p.L659L|CTNND1_uc001nlj.3_Silent_p.L659L|CTNND1_uc001nlr.3_Silent_p.L659L|CTNND1_uc001nlp.3_Silent_p.L659L|CTNND1_uc001nlx.3_Silent_p.L396L|CTNND1_uc001nlz.3_Silent_p.L396L|CTNND1_uc009ymn.2_Silent_p.L390L|CTNND1_uc001nlm.3_Silent_p.L713L|CTNND1_uc001nly.3_Silent_p.L390L|CTNND1_uc001nmb.3_Silent_p.L390L|CTNND1_uc001nma.3_Silent_p.L390L|CTNND1_uc001nmi.3_Silent_p.L618L|CTNND1_uc001nmh.3_Silent_p.L713L|CTNND1_uc001nlq.3_Silent_p.L618L|CTNND1_uc001nln.3_Silent_p.L713L|CTNND1_uc001nli.3_Silent_p.L713L|CTNND1_uc001nlo.3_Silent_p.L612L|CTNND1_uc001nlv.3_Silent_p.L612L	NM_001085458	NP_001078927	O60716	CTND1_HUMAN	catenin, delta 1 isoform 1ABC	719	ARM 8.				adherens junction organization|cell junction assembly|negative regulation of canonical Wnt receptor signaling pathway|regulation of transcription, DNA-dependent|transcription, DNA-dependent|Wnt receptor signaling pathway	cytosol|midbody|nucleus	cadherin binding|protein binding|receptor binding			breast(4)|ovary(1)|kidney(1)	6		all_epithelial(135;0.155)				AGCTGACCTCCTGACTAATGA	0.463000													28	156					0	0	1	0	0
GPR133	283383	broad.mit.edu	37	12	131476848	131476848	+	Missense_Mutation	SNP	C	G	G	rs146929634		TCGA-BJ-A0Z5-01A-11D-A10S-08	TCGA-BJ-A0Z5-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ed76717-6eda-4f72-83ef-bce453ff5494	da7913e4-850f-4e20-9727-38a8aa7160c7	g.chr12:131476848C>G	uc001uit.3	+	8	1436	c.877C>G	c.(877-879)CCC>GCC	p.P293A	GPR133_uc010tbm.1_Missense_Mutation_p.P325A	NM_198827	NP_942122	Q6QNK2	GP133_HUMAN	G protein-coupled receptor 133 precursor	293	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			pancreas(5)|ovary(3)|skin(2)	10	all_neural(191;0.0982)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;1.68e-06)|all cancers(50;2.71e-06)|Epithelial(86;6.75e-06)		CTTCCAAAGTCCCGGAGTGAT	0.458000													120	149					0	0	1	0	0
RAP2A	5911	broad.mit.edu	37	13	98086903	98086903	+	Missense_Mutation	SNP	G	C	C			TCGA-BJ-A0Z5-01A-11D-A10S-08	TCGA-BJ-A0Z5-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ed76717-6eda-4f72-83ef-bce453ff5494	da7913e4-850f-4e20-9727-38a8aa7160c7	g.chr13:98086903G>C	uc001vnd.2	+	1	429	c.179G>C	c.(178-180)GGC>GCC	p.G60A		NM_021033	NP_066361	P10114	RAP2A_HUMAN	RAP2A, member of RAS oncogene family precursor	60	GTP (By similarity).				actin cytoskeleton reorganization|cellular protein localization|establishment of protein localization|positive regulation of protein autophosphorylation|Rap protein signal transduction|regulation of dendrite morphogenesis|regulation of JNK cascade	recycling endosome membrane	GTP binding|GTPase activity|protein binding			central_nervous_system(1)	1	all_neural(89;0.0982)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)		BRCA - Breast invasive adenocarcinoma(86;0.166)			GACACGGCGGGCACCGAGCAG	0.592000													32	77					0	0	1	0	0
DNAH9	1770	broad.mit.edu	37	17	11684407	11684407	+	Missense_Mutation	SNP	A	T	T			TCGA-BJ-A0Z5-01A-11D-A10S-08	TCGA-BJ-A0Z5-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ed76717-6eda-4f72-83ef-bce453ff5494	da7913e4-850f-4e20-9727-38a8aa7160c7	g.chr17:11684407A>T	uc002gne.2	+	39	7702	c.7634A>T	c.(7633-7635)GAT>GTT	p.D2545V	DNAH9_uc010coo.2_Missense_Mutation_p.D1839V	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	2545	AAA 3 (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		TATTTCATTGATGACATGAAC	0.552000													12	69					0	0	1	0	0
ACAA2	10449	broad.mit.edu	37	18	47340622	47340622	+	5'Flank	SNP	C	T	T			TCGA-BJ-A0Z5-01A-11D-A10S-08	TCGA-BJ-A0Z5-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ed76717-6eda-4f72-83ef-bce453ff5494	da7913e4-850f-4e20-9727-38a8aa7160c7	g.chr18:47340622C>T	uc002ldw.3	-						ACAA2_uc002ldx.3_5'Flank|SCARNA17_uc002ldy.1_RNA	NM_006111	NP_006102	P42765	THIM_HUMAN	acetyl-coenzyme A acyltransferase 2						anti-apoptosis|cholesterol biosynthetic process		acetyl-CoA C-acyltransferase activity|protein binding			ovary(1)	1						ACGTGGCGAGCGAAATGGGGC	0.652000													17	132					0	0	1	0	0
ZNF784	147808	broad.mit.edu	37	19	56135922	56135922	+	Silent	SNP	G	A	A			TCGA-BJ-A0Z5-01A-11D-A10S-08	TCGA-BJ-A0Z5-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ed76717-6eda-4f72-83ef-bce453ff5494	da7913e4-850f-4e20-9727-38a8aa7160c7	g.chr19:56135922G>A	uc002qll.1	-	1	20	c.6C>T	c.(4-6)GCC>GCT	p.A2A	ZNF784_uc010etb.1_RNA	NM_203374	NP_976308	Q8NCA9	ZN784_HUMAN	zinc finger protein 784	2					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0			BRCA - Breast invasive adenocarcinoma(297;0.18)	GBM - Glioblastoma multiforme(193;0.105)		GGCGCGCAGCGGCCATCTTGT	0.637000													3	7					0	0	1	0	0
TAF1B	9014	broad.mit.edu	37	2	9991745	9991745	+	Missense_Mutation	SNP	T	C	C			TCGA-BJ-A0Z5-01A-11D-A10S-08	TCGA-BJ-A0Z5-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ed76717-6eda-4f72-83ef-bce453ff5494	da7913e4-850f-4e20-9727-38a8aa7160c7	g.chr2:9991745T>C	uc002qzz.2	+	4	381	c.281T>C	c.(280-282)CTT>CCT	p.L94P	TAF1B_uc010exc.2_Missense_Mutation_p.L94P|TAF1B_uc002qzy.3_Missense_Mutation_p.L94P|TAF1B_uc010yja.1_5'UTR|TAF1B_uc010exd.2_5'UTR	NM_005680	NP_005671	Q53T94	TAF1B_HUMAN	TBP-associated factor 1B	94					termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription initiation from RNA polymerase I promoter	nucleoplasm	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|breast(1)|pancreas(1)	3	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)					TTAAAGAACCTTGGAGTAGGC	0.348000													55	72					0	0	1	0	0
CPNE1	8904	broad.mit.edu	37	20	34220780	34220780	+	Silent	SNP	G	A	A			TCGA-BJ-A0Z5-01A-11D-A10S-08	TCGA-BJ-A0Z5-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ed76717-6eda-4f72-83ef-bce453ff5494	da7913e4-850f-4e20-9727-38a8aa7160c7	g.chr20:34220780G>A	uc002xdf.2	-	4	429	c.66C>T	c.(64-66)ATC>ATT	p.I22I	CPNE1_uc002xdc.2_5'Flank|CPNE1_uc010zvj.1_Silent_p.I27I|CPNE1_uc002xde.2_Silent_p.I22I|CPNE1_uc002xdg.2_Silent_p.I22I|CPNE1_uc010gfi.2_RNA|CPNE1_uc010gfj.2_RNA|CPNE1_uc002xdh.2_Silent_p.I22I|CPNE1_uc002xdi.2_Silent_p.I22I|CPNE1_uc002xdj.2_Silent_p.I22I|CPNE1_uc002xdk.2_Silent_p.I22I|CPNE1_uc002xdl.2_Silent_p.I22I|CPNE1_uc002xdm.2_Silent_p.I22I|CPNE1_uc010gfk.1_Silent_p.I22I|CPNE1_uc002xdn.1_Intron|CPNE1_uc002xdo.1_Intron|CPNE1_uc002xdp.1_RNA	NM_152931	NP_690908	Q99829	CPNE1_HUMAN	copine I isoform a	22	C2 1.				lipid metabolic process|vesicle-mediated transport		calcium-dependent phospholipid binding|phosphatidylserine binding|transporter activity			upper_aerodigestive_tract(1)	1	Lung NSC(9;0.0053)|all_lung(11;0.00785)		BRCA - Breast invasive adenocarcinoma(18;0.00953)			ACTTGGAGCCGATGTCCTTGT	0.567000													9	155					0	0	1	0	0
PGM2	55276	broad.mit.edu	37	4	37848657	37848657	+	Missense_Mutation	SNP	C	A	A			TCGA-BJ-A0Z5-01A-11D-A10S-08	TCGA-BJ-A0Z5-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ed76717-6eda-4f72-83ef-bce453ff5494	da7913e4-850f-4e20-9727-38a8aa7160c7	g.chr4:37848657C>A	uc011byb.1	+	9	1186	c.1113C>A	c.(1111-1113)GAC>GAA	p.D371E	PGM2_uc011bya.1_Missense_Mutation_p.D232E|PGM2_uc011byc.1_Missense_Mutation_p.D211E	NM_018290	NP_060760	Q96G03	PGM2_HUMAN	phosphoglucomutase 2	371					glucose 1-phosphate metabolic process|glycogen biosynthetic process|glycogen catabolic process	cytosol	magnesium ion binding|phosphoglucomutase activity|phosphopentomutase activity			ovary(1)	1						CTCTCAAAGACACGTACATGT	0.498000													99	124					4.69036e-40	5.79397e-40	1	1	0
ARHGAP18	93663	broad.mit.edu	37	6	129920436	129920436	+	Silent	SNP	T	C	C			TCGA-BJ-A0Z5-01A-11D-A10S-08	TCGA-BJ-A0Z5-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ed76717-6eda-4f72-83ef-bce453ff5494	da7913e4-850f-4e20-9727-38a8aa7160c7	g.chr6:129920436T>C	uc003qbr.2	-	12	1727	c.1638A>G	c.(1636-1638)AGA>AGG	p.R546R	ARHGAP18_uc011ebw.1_Silent_p.R546R	NM_033515	NP_277050	Q8N392	RHG18_HUMAN	Rho GTPase activating protein 18	546					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|protein binding			ovary(2)|skin(1)	3				OV - Ovarian serous cystadenocarcinoma(136;0.0621)|GBM - Glioblastoma multiforme(226;0.0638)|all cancers(137;0.074)		TCTTCATGGCTCTTTTATCCT	0.318000													29	38					0	0	1	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-BJ-A0Z5-01A-11D-A10S-08	TCGA-BJ-A0Z5-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ed76717-6eda-4f72-83ef-bce453ff5494	da7913e4-850f-4e20-9727-38a8aa7160c7	g.chr7:140453136A>T	uc003vwc.3	-	15	1860	c.1799T>A	c.(1798-1800)GTG>GAG	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368000	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				60	65					0	0	1	0	0
SLC4A2	6522	broad.mit.edu	37	7	150773151	150773151	+	Missense_Mutation	SNP	G	T	T			TCGA-BJ-A0Z5-01A-11D-A10S-08	TCGA-BJ-A0Z5-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ed76717-6eda-4f72-83ef-bce453ff5494	da7913e4-850f-4e20-9727-38a8aa7160c7	g.chr7:150773151G>T	uc003wit.3	+	22	3779	c.3523G>T	c.(3523-3525)GCC>TCC	p.A1175S	SLC4A2_uc011kve.1_Missense_Mutation_p.A1166S|SLC4A2_uc003wiu.3_Missense_Mutation_p.A1161S|SLC4A2_uc003wiv.3_Missense_Mutation_p.A369S|uc011kvf.1_Silent_p.G98G	NM_003040	NP_003031	P04920	B3A2_HUMAN	solute carrier family 4, anion exchanger, member	1175	Membrane (anion exchange).|Helical; (Potential).				bicarbonate transport	integral to membrane|membrane fraction	inorganic anion exchanger activity				0			OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		GCTCTGCCTGGCCCTGCTCTG	0.657000													61	84					1.31171e-36	1.53032e-36	1	1	0
TRPS1	7227	broad.mit.edu	37	8	116426408	116426408	+	Missense_Mutation	SNP	T	C	C			TCGA-BJ-A0Z5-01A-11D-A10S-08	TCGA-BJ-A0Z5-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ed76717-6eda-4f72-83ef-bce453ff5494	da7913e4-850f-4e20-9727-38a8aa7160c7	g.chr8:116426408T>C	uc003ynz.2	-	6	4148	c.3689A>G	c.(3688-3690)TAT>TGT	p.Y1230C	TRPS1_uc011lhy.1_Missense_Mutation_p.Y1234C|TRPS1_uc003yny.2_Missense_Mutation_p.Y1243C|TRPS1_uc010mcy.2_Missense_Mutation_p.Y1230C	NM_014112	NP_054831	Q9UHF7	TRPS1_HUMAN	zinc finger transcription factor TRPS1	1230	Transcriptional repressor domain (By similarity).|C2H2-type 6.				negative regulation of transcription from RNA polymerase II promoter|NLS-bearing substrate import into nucleus|regulation of chondrocyte differentiation|skeletal system development|transcription from RNA polymerase II promoter	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|skin(2)|pancreas(1)|lung(1)|kidney(1)	7	all_cancers(13;5.44e-23)|all_epithelial(1;2.14e-27)|Lung NSC(37;2.55e-05)|Ovarian(258;0.0219)		Epithelial(1;9.78e-37)|all cancers(1;3.14e-31)|BRCA - Breast invasive adenocarcinoma(1;2.56e-12)			ATGCAAAGCATACATCACTTC	0.403000									Langer-Giedion_syndrome				82	108					0	0	1	0	0
ZER1	10444	broad.mit.edu	37	9	131504910	131504910	+	Missense_Mutation	SNP	C	A	A			TCGA-BJ-A0Z5-01A-11D-A10S-08	TCGA-BJ-A0Z5-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ed76717-6eda-4f72-83ef-bce453ff5494	da7913e4-850f-4e20-9727-38a8aa7160c7	g.chr9:131504910C>A	uc004bwa.1	-	9	1907	c.1474G>T	c.(1474-1476)GAC>TAC	p.D492Y		NM_006336	NP_006327	Q7Z7L7	ZER1_HUMAN	zyg-11 homolog B (C. elegans)-like	492					ATP hydrolysis coupled proton transport|regulation of ubiquitin-protein ligase activity	Cul2-RING ubiquitin ligase complex|vacuolar proton-transporting V-type ATPase, V1 domain	protein binding|proton-transporting ATPase activity, rotational mechanism|ubiquitin-protein ligase activity			ovary(1)	1						ATAGACTCGTCCTGCCGCGTG	0.617000													9	114					0.000442599	0.000442599	1	1	0
FAM78A	286336	broad.mit.edu	37	9	134136676	134136676	+	Missense_Mutation	SNP	C	T	T			TCGA-BJ-A0Z5-01A-11D-A10S-08	TCGA-BJ-A0Z5-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ed76717-6eda-4f72-83ef-bce453ff5494	da7913e4-850f-4e20-9727-38a8aa7160c7	g.chr9:134136676C>T	uc004cak.2	-	2	725	c.385G>A	c.(385-387)GGG>AGG	p.G129R	FAM78A_uc004caj.2_Missense_Mutation_p.G126R	NM_033387	NP_203745	Q5JUQ0	FA78A_HUMAN	hypothetical protein LOC286336	129										ovary(1)	1	all_hematologic(7;0.0028)	Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;2.15e-05)|Epithelial(140;0.000267)		TAGTTCACCCCATCCGAGTCG	0.547000													23	60					0	0	1	0	0
Unknown	0	broad.mit.edu	37	1	20952456	20952456	+	IGR	DEL	A	-	-	rs151080214		TCGA-BJ-A0Z5-01A-11D-A10S-08	TCGA-BJ-A0Z5-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ed76717-6eda-4f72-83ef-bce453ff5494	da7913e4-850f-4e20-9727-38a8aa7160c7	g.chr1:20952456delA								CDA (7058 upstream) : PINK1 (7492 downstream)																							gccttggaagaaaaggaaggg	0.000													2	4	---	---	---	---					
XCL2	6846	broad.mit.edu	37	1	168513367	168513367	+	5'Flank	DEL	A	-	-			TCGA-BJ-A0Z5-01A-11D-A10S-08	TCGA-BJ-A0Z5-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ed76717-6eda-4f72-83ef-bce453ff5494	da7913e4-850f-4e20-9727-38a8aa7160c7	g.chr1:168513367delA	uc001gfn.3	-							NM_003175	NP_003166	Q9UBD3	XCL2_HUMAN	chemokine (C motif) ligand 2 precursor						blood circulation|chemotaxis|immune response|signal transduction	extracellular space	chemokine activity			ovary(1)	1	all_hematologic(923;0.215)					TATTTTTCTTAAAAAAAAAAA	0.423													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	13	106148111	106148114	+	IGR	DEL	CTTC	-	-			TCGA-BJ-A0Z5-01A-11D-A10S-08	TCGA-BJ-A0Z5-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ed76717-6eda-4f72-83ef-bce453ff5494	da7913e4-850f-4e20-9727-38a8aa7160c7	g.chr13:106148111_106148114delCTTC								DAOA (4729 upstream) : EFNB2 (993984 downstream)																							GGATCTTTCTcttccttccttcct	0.240													4	9	---	---	---	---					
Unknown	0	broad.mit.edu	37	14	20138376	20138376	+	IGR	DEL	G	-	-	rs57620493		TCGA-BJ-A0Z5-01A-11D-A10S-08	TCGA-BJ-A0Z5-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ed76717-6eda-4f72-83ef-bce453ff5494	da7913e4-850f-4e20-9727-38a8aa7160c7	g.chr14:20138376delG								P704P (118104 upstream) : OR4Q3 (77211 downstream)																							ACAaaagaaagaaagaaagaa	0.219													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	15	56038833	56038833	+	IGR	DEL	G	-	-			TCGA-BJ-A0Z5-01A-11D-A10S-08	TCGA-BJ-A0Z5-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ed76717-6eda-4f72-83ef-bce453ff5494	da7913e4-850f-4e20-9727-38a8aa7160c7	g.chr15:56038833delG								PRTG (3656 upstream) : NEDD4 (80298 downstream)																							aaaaaaaaaagaaGCTCCTGG	0.279													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	17	75864764	75864765	+	IGR	DEL	TG	-	-	rs113869156		TCGA-BJ-A0Z5-01A-11D-A10S-08	TCGA-BJ-A0Z5-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ed76717-6eda-4f72-83ef-bce453ff5494	da7913e4-850f-4e20-9727-38a8aa7160c7	g.chr17:75864764_75864765delTG								SEPT9 (368088 upstream) : FLJ45079 (10344 downstream)																							GCCCAGACTCtgtgtgtgtgtg	0.307													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	3	99094887	99094888	+	IGR	DEL	AC	-	-	rs63649062		TCGA-BJ-A0Z5-01A-11D-A10S-08	TCGA-BJ-A0Z5-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ed76717-6eda-4f72-83ef-bce453ff5494	da7913e4-850f-4e20-9727-38a8aa7160c7	g.chr3:99094887_99094888delAC								DCBLD2 (474354 upstream) : COL8A1 (262566 downstream)																							atacacacagacacacacacac	0.257													3	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	3	109648950	109648953	+	IGR	DEL	TCCC	-	-	rs113948167		TCGA-BJ-A0Z5-01A-11D-A10S-08	TCGA-BJ-A0Z5-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ed76717-6eda-4f72-83ef-bce453ff5494	da7913e4-850f-4e20-9727-38a8aa7160c7	g.chr3:109648950_109648953delTCCC								FLJ25363 (434936 upstream) : None (None downstream)																							cttccctccttccctccttccttc	0.000													3	6	---	---	---	---					
MSX1	4487	broad.mit.edu	37	4	4861631	4861631	+	Frame_Shift_Del	DEL	C	-	-			TCGA-BJ-A0Z5-01A-11D-A10S-08	TCGA-BJ-A0Z5-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ed76717-6eda-4f72-83ef-bce453ff5494	da7913e4-850f-4e20-9727-38a8aa7160c7	g.chr4:4861631delC	uc003gif.2	+	1	240	c.5delC	c.(4-6)GCCfs	p.A2fs		NM_002448	NP_002439	P28360	MSX1_HUMAN	msh homeobox 1	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					apoptotic nuclear change|face morphogenesis|negative regulation of cell growth|odontogenesis of dentine-containing tooth|positive regulation of apoptosis|protein localization to nucleus|protein stabilization	nucleus	p53 binding|sequence-specific DNA binding transcription factor activity				0				UCEC - Uterine corpus endometrioid carcinoma (64;0.163)		CTCTGCATGGCCCCGGCTGCT	0.557													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	5	141209014	141209015	+	IGR	INS	-	GAAG	GAAG	rs597251	by1000genomes	TCGA-BJ-A0Z5-01A-11D-A10S-08	TCGA-BJ-A0Z5-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ed76717-6eda-4f72-83ef-bce453ff5494	da7913e4-850f-4e20-9727-38a8aa7160c7	g.chr5:141209014_141209015insGAAG								ARAP3 (147214 upstream) : PCDH1 (23668 downstream)																							aaggaaggaaagaaggaaggaa	0.000													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	5	172001484	172001487	+	IGR	DEL	CCCT	-	-			TCGA-BJ-A0Z5-01A-11D-A10S-08	TCGA-BJ-A0Z5-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ed76717-6eda-4f72-83ef-bce453ff5494	da7913e4-850f-4e20-9727-38a8aa7160c7	g.chr5:172001484_172001487delCCCT								SH3PXD2B (119957 upstream) : NEURL1B (66789 downstream)																							cctctccttcccctccctccctcc	0.118													4	8	---	---	---	---					
Unknown	0	broad.mit.edu	37	6	28675376	28675377	+	IGR	INS	-	GA	GA			TCGA-BJ-A0Z5-01A-11D-A10S-08	TCGA-BJ-A0Z5-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ed76717-6eda-4f72-83ef-bce453ff5494	da7913e4-850f-4e20-9727-38a8aa7160c7	g.chr6:28675376_28675377insGA								SCAND3 (120264 upstream) : TRIM27 (195403 downstream)																							aggaaggaaggaaggaaggaag	0.000													3	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	9	118904154	118904155	+	IGR	INS	-	GGAA	GGAA	rs137990063	by1000genomes	TCGA-BJ-A0Z5-01A-11D-A10S-08	TCGA-BJ-A0Z5-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ed76717-6eda-4f72-83ef-bce453ff5494	da7913e4-850f-4e20-9727-38a8aa7160c7	g.chr9:118904154_118904155insGGAA								C9orf27 (216777 upstream) : PAPPA (11916 downstream)																							GTATGTTggaaggaaggaagga	0.168													2	4	---	---	---	---					
GAGE10	643832	broad.mit.edu	37	X	49158062	49158062	+	5'Flank	DEL	T	-	-			TCGA-BJ-A0Z5-01A-11D-A10S-08	TCGA-BJ-A0Z5-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ed76717-6eda-4f72-83ef-bce453ff5494	da7913e4-850f-4e20-9727-38a8aa7160c7	g.chrX:49158062delT	uc010nir.1	+							NM_001098413	NP_001091883	A6NGK3	GAG10_HUMAN	G antigen 10												0	Ovarian(276;0.236)					acatcattccttttttttttt	0.000													2	4	---	---	---	---					
