Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
MST1P2	11209	broad.mit.edu	37	1	16974243	16974243	+	RNA	SNP	G	C	C	rs142213352	by1000genomes	TCGA-BJ-A192-01A-31D-A13W-08	TCGA-BJ-A192-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d79a268-fa99-488e-ac9a-24e7adef76bc	05f2dae1-eff1-46b9-ada8-423cb1cdb118	g.chr1:16974243G>C	uc009vow.2	+	5		c.1053G>C			MST1P2_uc010ocg.1_RNA|MST1P2_uc010och.1_Intron|MST1P2_uc010oci.1_RNA|MST1P2_uc001azk.2_Intron|MST1P2_uc001azl.3_RNA|MST1P2_uc009vox.2_Intron|MST1P2_uc001azm.3_Intron					Homo sapiens cDNA FLJ53774 complete cds, moderately similar to Hepatocyte growth factor-like protein precursor.												0						GATCTCAGCTGTCGCTCGGGG	0.652000													3	26	---	---	---	---	0	0	0.115264	0	0
ERAL1	26284	broad.mit.edu	37	17	27182067	27182067	+	Silent	SNP	C	T	T			TCGA-BJ-A192-01A-31D-A13W-08	TCGA-BJ-A192-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d79a268-fa99-488e-ac9a-24e7adef76bc	05f2dae1-eff1-46b9-ada8-423cb1cdb118	g.chr17:27182067C>T	uc002hcy.1	+	1	25	c.15C>T	c.(13-15)AGC>AGT	p.S5S	ERAL1_uc002hcx.1_Silent_p.S5S|ERAL1_uc002hcz.1_RNA|ERAL1_uc002hda.1_5'Flank|ERAL1_uc002hdb.1_5'Flank	NM_005702	NP_005693	O75616	ERAL1_HUMAN	Era-like 1	5					ribosomal small subunit assembly	mitochondrial inner membrane|mitochondrial matrix	GTP binding|ribosomal small subunit binding|rRNA binding			skin(1)	1	all_cancers(5;2.12e-15)|all_epithelial(6;3.44e-19)|Lung NSC(42;0.01)		Epithelial(11;1.12e-05)|all cancers(11;5.32e-05)|BRCA - Breast invasive adenocarcinoma(11;0.000272)|OV - Ovarian serous cystadenocarcinoma(11;0.105)			CTGCCCCCAGCTGGCGCGGGG	0.612000													5	26	---	---	---	---	0	0	0.021553	0	0
KEAP1	9817	broad.mit.edu	37	19	10600426	10600426	+	Missense_Mutation	SNP	C	T	T			TCGA-BJ-A192-01A-31D-A13W-08	TCGA-BJ-A192-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d79a268-fa99-488e-ac9a-24e7adef76bc	05f2dae1-eff1-46b9-ada8-423cb1cdb118	g.chr19:10600426C>T	uc002moq.1	-	4	1585	c.1429G>A	c.(1429-1431)GGC>AGC	p.G477S	KEAP1_uc002mop.1_Missense_Mutation_p.G195S|KEAP1_uc002mor.1_Missense_Mutation_p.G477S	NM_012289	NP_036421	Q14145	KEAP1_HUMAN	kelch-like ECH-associated protein 1	477	Kelch 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	centrosome|midbody|nucleus	protein binding			lung(12)|breast(3)|ovary(1)|pancreas(1)	17			OV - Ovarian serous cystadenocarcinoma(20;2.71e-09)|Epithelial(33;2.32e-06)|all cancers(31;1.42e-05)			CCGTCAAAGCCCCCCACGGCA	0.577000													12	8	---	---	---	---	0	0	0.080935	0	0
NFKBID	84807	broad.mit.edu	37	19	36387021	36387021	+	Missense_Mutation	SNP	G	A	A			TCGA-BJ-A192-01A-31D-A13W-08	TCGA-BJ-A192-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d79a268-fa99-488e-ac9a-24e7adef76bc	05f2dae1-eff1-46b9-ada8-423cb1cdb118	g.chr19:36387021G>A	uc002oci.1	-	9	1041	c.467C>T	c.(466-468)CCG>CTG	p.P156L	NFKBID_uc002och.1_5'UTR|NFKBID_uc002ocj.1_Missense_Mutation_p.P171L	NM_139239	NP_640332	Q8NI38	IKBD_HUMAN	nuclear factor of kappa light polypeptide gene	156	ANK 4.				inflammatory response	nucleus					0						CGTGTGGAGCGGGGTGAGGCC	0.647000													9	75	---	---	---	---	0	0	0.058154	0	0
LGALS13	29124	broad.mit.edu	37	19	40095966	40095966	+	Missense_Mutation	SNP	G	A	A			TCGA-BJ-A192-01A-31D-A13W-08	TCGA-BJ-A192-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d79a268-fa99-488e-ac9a-24e7adef76bc	05f2dae1-eff1-46b9-ada8-423cb1cdb118	g.chr19:40095966G>A	uc002omb.2	+	3	281	c.241G>A	c.(241-243)GTG>ATG	p.V81M		NM_013268	NP_037400	Q9UHV8	PP13_HUMAN	galectin-13	81	Galectin.				lipid catabolic process|phospholipid metabolic process		carboxylesterase activity|lysophospholipase activity|sugar binding			ovary(1)	1	all_cancers(60;1.77e-05)|all_lung(34;5.38e-08)|Lung NSC(34;6.37e-08)|Ovarian(47;0.116)		Epithelial(26;3.28e-26)|OV - Ovarian serous cystadenocarcinoma(5;7.31e-25)|all cancers(26;1.15e-23)|LUSC - Lung squamous cell carcinoma(53;0.00281)			AACAGACTACGTGCCCTTTGA	0.493000													31	47	---	---	---	---	0	0	0.045705	0	0
C21orf99	149992	broad.mit.edu	37	21	14414844	14414844	+	RNA	SNP	T	C	C	rs148060711	by1000genomes	TCGA-BJ-A192-01A-31D-A13W-08	TCGA-BJ-A192-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d79a268-fa99-488e-ac9a-24e7adef76bc	05f2dae1-eff1-46b9-ada8-423cb1cdb118	g.chr21:14414844T>C	uc002yiy.3	+	2		c.281T>C			C21orf99_uc002yja.3_RNA					Homo sapiens C21orf99 protein (C21orf99) mRNA, complete cds.												0						ACTGGGCCTGTGCCAATGGCC	0.433000													4	59	---	---	---	---	0	0	0.029380	0	0
GNAT1	2779	broad.mit.edu	37	3	50230803	50230803	+	Silent	SNP	C	T	T			TCGA-BJ-A192-01A-31D-A13W-08	TCGA-BJ-A192-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d79a268-fa99-488e-ac9a-24e7adef76bc	05f2dae1-eff1-46b9-ada8-423cb1cdb118	g.chr3:50230803C>T	uc003cym.2	+	3	371	c.255C>T	c.(253-255)ACC>ACT	p.T85T	GNAT1_uc003cyl.2_Silent_p.T85T	NM_144499	NP_653082	P11488	GNAT1_HUMAN	rod-type transducin alpha subunit	85					detection of chemical stimulus involved in sensory perception of bitter taste|G-protein signaling, coupled to cAMP nucleotide second messenger|negative regulation of cyclic-nucleotide phosphodiesterase activity|rhodopsin mediated phototransduction|sensory perception of umami taste	heterotrimeric G-protein complex|photoreceptor inner segment|photoreceptor outer segment membrane	acyl binding|G-protein beta/gamma-subunit complex binding|G-protein-coupled receptor binding|GDP binding|GTP binding|GTPase activity|protein kinase binding|signal transducer activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.000272)|KIRC - Kidney renal clear cell carcinoma(197;0.00544)|Kidney(197;0.00605)		GCGCCATGACCACACTCAACA	0.637000													8	31	---	---	---	---	0	0	0.069234	0	0
CDH12	1010	broad.mit.edu	37	5	21842341	21842341	+	Missense_Mutation	SNP	C	T	T			TCGA-BJ-A192-01A-31D-A13W-08	TCGA-BJ-A192-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d79a268-fa99-488e-ac9a-24e7adef76bc	05f2dae1-eff1-46b9-ada8-423cb1cdb118	g.chr5:21842341C>T	uc010iuc.2	-	5	1201	c.743G>A	c.(742-744)GGA>GAA	p.G248E	CDH12_uc011cno.1_Missense_Mutation_p.G208E|CDH12_uc003jgk.2_Missense_Mutation_p.G248E	NM_004061	NP_004052	P55289	CAD12_HUMAN	cadherin 12, type 2 preproprotein	248	Extracellular (Potential).|Cadherin 2.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)	2						TCCGGCTAATCCTCCAAGCTG	0.423000										HNSCC(59;0.17)			9	163	---	---	---	---	0	0	0.058154	0	0
ABP1	26	broad.mit.edu	37	7	150554081	150554081	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BJ-A192-01A-31D-A13W-08	TCGA-BJ-A192-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d79a268-fa99-488e-ac9a-24e7adef76bc	05f2dae1-eff1-46b9-ada8-423cb1cdb118	g.chr7:150554081C>T	uc003why.1	+	3	4741	c.523C>T	c.(523-525)CAA>TAA	p.Q175*	ABP1_uc003whz.1_Nonsense_Mutation_p.Q175*|ABP1_uc003wia.1_Nonsense_Mutation_p.Q175*	NM_001091	NP_001082	P19801	ABP1_HUMAN	amiloride binding protein 1 precursor	175					amine metabolic process	extracellular space|peroxisome	copper ion binding|diamine oxidase activity|heparin binding|histamine oxidase activity|methylputrescine oxidase activity|primary amine oxidase activity|propane-1,3-diamine oxidase activity|quinone binding			ovary(2)|breast(2)|skin(2)	6	all_neural(206;0.219)		OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)	Amiloride(DB00594)|Spermine(DB00127)	CTTCTCATTCCAAGACTGCCA	0.582000													40	111	---	---	---	---	0	0	0.092188	0	0
RPL23AP53	644128	broad.mit.edu	37	8	163401	163401	+	RNA	SNP	G	C	C			TCGA-BJ-A192-01A-31D-A13W-08	TCGA-BJ-A192-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d79a268-fa99-488e-ac9a-24e7adef76bc	05f2dae1-eff1-46b9-ada8-423cb1cdb118	g.chr8:163401G>C	uc010lra.2	-	4		c.732C>G			RPL23AP53_uc003woq.3_RNA|RPL23AP53_uc010lrb.2_RNA	NR_003572				Homo sapiens cDNA FLJ45055 fis, clone BRAWH3022900.												0						TCTGGTGCTTGTTGGCTTTAA	0.463000													3	56	---	---	---	---	0	0	0.115264	0	0
MIR876	100126310	broad.mit.edu	37	9	28863696	28863696	+	RNA	SNP	A	C	C			TCGA-BJ-A192-01A-31D-A13W-08	TCGA-BJ-A192-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d79a268-fa99-488e-ac9a-24e7adef76bc	05f2dae1-eff1-46b9-ada8-423cb1cdb118	g.chr9:28863696A>C	hsa-mir-876|MI0005542	-			c.9A>C																				0						AGAAATCCACAGCACTTCACA	0.403000													14	27	---	---	---	---	0	0	0.146539	0	0
Unknown	0	broad.mit.edu	37	9	68413586	68413586	+	RNA	SNP	G	A	A			TCGA-BJ-A192-01A-31D-A13W-08	TCGA-BJ-A192-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d79a268-fa99-488e-ac9a-24e7adef76bc	05f2dae1-eff1-46b9-ada8-423cb1cdb118	g.chr9:68413586G>A	uc004aex.2	+	1		c.141G>A								Homo sapiens mRNA; cDNA DKFZp564N0763 (from clone DKFZp564N0763).																		TCTAGGAAAGGTTGTGCCTTT	0.597000													3	15	---	---	---	---	0	0	0.009096	0	0
PCSK5	5125	broad.mit.edu	37	9	78796460	78796460	+	Missense_Mutation	SNP	C	A	A			TCGA-BJ-A192-01A-31D-A13W-08	TCGA-BJ-A192-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d79a268-fa99-488e-ac9a-24e7adef76bc	05f2dae1-eff1-46b9-ada8-423cb1cdb118	g.chr9:78796460C>A	uc004ajz.2	+	16	2688	c.2150C>A	c.(2149-2151)ACC>AAC	p.T717N	PCSK5_uc004aka.2_RNA|PCSK5_uc004akb.2_5'UTR	NM_006200	NP_006191	Q92824	PCSK5_HUMAN	proprotein convertase subtilisin/kexin type 5	717	CRM (Cys-rich motif).				anterior/posterior pattern formation|cell-cell signaling|cytokine biosynthetic process|embryo implantation|embryonic digestive tract development|embryonic skeletal system development|heart development|kidney development|limb morphogenesis|nerve growth factor processing|nerve growth factor receptor signaling pathway|peptide biosynthetic process|renin secretion into blood stream|respiratory tube development|signal peptide processing|viral assembly, maturation, egress, and release	extracellular space|Golgi lumen|stored secretory granule	peptide binding|serine-type endopeptidase activity			ovary(2)|skin(1)	3						AATGAAGAAACCAACAGCTGT	0.453000													6	85	---	---	---	---	5.18039e-06	1.33976e-05	0.038147	1	0
TUBBP5	643224	broad.mit.edu	37	9	141070695	141070695	+	Missense_Mutation	SNP	G	A	A			TCGA-BJ-A192-01A-31D-A13W-08	TCGA-BJ-A192-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d79a268-fa99-488e-ac9a-24e7adef76bc	05f2dae1-eff1-46b9-ada8-423cb1cdb118	g.chr9:141070695G>A	uc004com.2	+	4	359	c.98G>A	c.(97-99)CGC>CAC	p.R33H	TUBBP5_uc010ncq.2_Silent_p.T210T					RecName: Full=Putative tubulin beta-4q chain;												0						GCCAAGGGACGCTACACCGAA	0.592000													3	15	---	---	---	---	0	0	0.115264	0	0
TUBBP5	643224	broad.mit.edu	37	9	141070719	141070719	+	Missense_Mutation	SNP	C	T	T	rs12353121	by1000genomes	TCGA-BJ-A192-01A-31D-A13W-08	TCGA-BJ-A192-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d79a268-fa99-488e-ac9a-24e7adef76bc	05f2dae1-eff1-46b9-ada8-423cb1cdb118	g.chr9:141070719C>T	uc004com.2	+	4	383	c.122C>T	c.(121-123)ACG>ATG	p.T41M	TUBBP5_uc010ncq.2_Silent_p.D218D					RecName: Full=Putative tubulin beta-4q chain;												0						GCGGAGCTGACGGAGTCAGTG	0.617000													4	23	---	---	---	---	0	0	0.029380	0	0
Unknown	0	broad.mit.edu	37	MT	2201	2201	+	5'Flank	SNP	G	A	A			TCGA-BJ-A192-01A-31D-A13W-08	TCGA-BJ-A192-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d79a268-fa99-488e-ac9a-24e7adef76bc	05f2dae1-eff1-46b9-ada8-423cb1cdb118	g.chrM:2201G>A	uc004coq.3	-						uc004cos.3_RNA					Homo sapiens cDNA: FLJ22857 fis, clone KAT01615.																		CCAATTAAGAAAGCGTTCAAG	0.393000													11	676	---	---	---	---	0	0	0.119110	0	0
Unknown	0	broad.mit.edu	37	MT	2894	2894	+	5'Flank	SNP	T	C	C			TCGA-BJ-A192-01A-31D-A13W-08	TCGA-BJ-A192-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d79a268-fa99-488e-ac9a-24e7adef76bc	05f2dae1-eff1-46b9-ada8-423cb1cdb118	g.chrM:2894T>C	uc004coq.3	-						uc004cos.3_RNA|uc011mfh.1_5'Flank					Homo sapiens cDNA: FLJ22857 fis, clone KAT01615.																		TACTATACTCAATTGATCCAA	0.453000													86	708	---	---	---	---	0	0	0.139131	0	0
Unknown	0	broad.mit.edu	37	MT	3290	3290	+	5'Flank	SNP	T	C	C			TCGA-BJ-A192-01A-31D-A13W-08	TCGA-BJ-A192-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d79a268-fa99-488e-ac9a-24e7adef76bc	05f2dae1-eff1-46b9-ada8-423cb1cdb118	g.chrM:3290T>C	uc004coq.3	-						uc004cos.3_RNA|uc011mfh.1_5'Flank					Homo sapiens cDNA: FLJ22857 fis, clone KAT01615.																		cagaggttcaattcctcttct	0.269000													186	464	---	---	---	---	0	0	0.139131	0	0
Unknown	0	broad.mit.edu	37	MT	11693	11693	+	RNA	SNP	G	A	A			TCGA-BJ-A192-01A-31D-A13W-08	TCGA-BJ-A192-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d79a268-fa99-488e-ac9a-24e7adef76bc	05f2dae1-eff1-46b9-ada8-423cb1cdb118	g.chrM:11693G>A	uc004cov.3	+	1		c.1116G>A			uc004cow.1_5'Flank|uc004cox.3_5'Flank					Homo sapiens potential LAG1 interactor mRNA, partial cds.																		GCTTCACCGGCGCAGTCATTC	0.473000													69	680	---	---	---	---	0	0	0.139131	0	0
MAP7D1	55700	broad.mit.edu	37	1	36643701	36643703	+	In_Frame_Del	DEL	AGA	-	-	rs76219908		TCGA-BJ-A192-01A-31D-A13W-08	TCGA-BJ-A192-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d79a268-fa99-488e-ac9a-24e7adef76bc	05f2dae1-eff1-46b9-ada8-423cb1cdb118	g.chr1:36643701_36643703delAGA	uc001bzz.2	+	9	1823_1825	c.1607_1609delAGA	c.(1606-1611)GAGAAG>GAG	p.K537del	MAP7D1_uc001caa.2_In_Frame_Del_p.K505del|MAP7D1_uc001cab.2_In_Frame_Del_p.K500del|MAP7D1_uc001cac.2_In_Frame_Del_p.K237del|MAP7D1_uc001cad.2_In_Frame_Del_p.K83del	NM_018067	NP_060537	Q3KQU3	MA7D1_HUMAN	MAP7 domain containing 1	537	Pro-rich.					cytoplasm|spindle				ovary(3)|breast(2)	5		Myeloproliferative disorder(586;0.0393)				GCCAGTAACGAGAAGGAGTCAGC	0.719													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	1	121483368	121483368	+	IGR	DEL	T	-	-	rs146908704		TCGA-BJ-A192-01A-31D-A13W-08	TCGA-BJ-A192-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d79a268-fa99-488e-ac9a-24e7adef76bc	05f2dae1-eff1-46b9-ada8-423cb1cdb118	g.chr1:121483368delT								LOC647121 (169682 upstream) : None (None downstream)																							tactgtctagtttttatgggc	0.000													10	259	---	---	---	---					
Unknown	0	broad.mit.edu	37	1	249239949	249239950	+	IGR	INS	-	T	T			TCGA-BJ-A192-01A-31D-A13W-08	TCGA-BJ-A192-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d79a268-fa99-488e-ac9a-24e7adef76bc	05f2dae1-eff1-46b9-ada8-423cb1cdb118	g.chr1:249239949_249239950insT								PGBD2 (26605 upstream) : None (None downstream)																							tagggttagggtagggttaggg	0.000													3	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42385596	42385596	+	IGR	DEL	G	-	-			TCGA-BJ-A192-01A-31D-A13W-08	TCGA-BJ-A192-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d79a268-fa99-488e-ac9a-24e7adef76bc	05f2dae1-eff1-46b9-ada8-423cb1cdb118	g.chr10:42385596delG								None (None upstream) : LOC441666 (441719 downstream)																							gtcatcaaatggaattcaaag	0.000													8	2799	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	70304123	70304123	+	IGR	DEL	T	-	-	rs71716010		TCGA-BJ-A192-01A-31D-A13W-08	TCGA-BJ-A192-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d79a268-fa99-488e-ac9a-24e7adef76bc	05f2dae1-eff1-46b9-ada8-423cb1cdb118	g.chr10:70304123delT								SLC25A16 (16539 upstream) : TET1 (15994 downstream)																							AAATTTGGTCTTTTTTTTTTA	0.373													2	4	---	---	---	---					
MSI1	4440	broad.mit.edu	37	12	120805884	120805884	+	Frame_Shift_Del	DEL	A	-	-			TCGA-BJ-A192-01A-31D-A13W-08	TCGA-BJ-A192-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d79a268-fa99-488e-ac9a-24e7adef76bc	05f2dae1-eff1-46b9-ada8-423cb1cdb118	g.chr12:120805884delA	uc001tye.1	-	4	258	c.194delT	c.(193-195)TTCfs	p.F65fs		NM_002442	NP_002433	O43347	MSI1H_HUMAN	musashi 1	65	RRM 1.				nervous system development	cytoplasm|nucleus	nucleotide binding			central_nervous_system(2)|breast(1)	3	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					GAAAGTGACGAAGCCGAAACC	0.657													9	11	---	---	---	---					
Unknown	0	broad.mit.edu	37	14	19123817	19123817	+	IGR	DEL	A	-	-	rs111719869		TCGA-BJ-A192-01A-31D-A13W-08	TCGA-BJ-A192-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d79a268-fa99-488e-ac9a-24e7adef76bc	05f2dae1-eff1-46b9-ada8-423cb1cdb118	g.chr14:19123817delA								None (None upstream) : OR11H12 (253777 downstream)																							gttcctcatcaaaaaaaaaat	0.114													4	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	15	42829432	42829435	+	IGR	DEL	CACA	-	-	rs147093589		TCGA-BJ-A192-01A-31D-A13W-08	TCGA-BJ-A192-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d79a268-fa99-488e-ac9a-24e7adef76bc	05f2dae1-eff1-46b9-ada8-423cb1cdb118	g.chr15:42829432_42829435delCACA								SNAP23 (4176 upstream) : LRRC57 (5287 downstream)																							ctctctctctcacacacacacaca	0.000													2	4	---	---	---	---					
APOB48R	55911	broad.mit.edu	37	16	28507398	28507424	+	Splice_Site	DEL	GGGACAGCCTCAGGAGGGGAGGAGGCC	-	-	rs62034314		TCGA-BJ-A192-01A-31D-A13W-08	TCGA-BJ-A192-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d79a268-fa99-488e-ac9a-24e7adef76bc	05f2dae1-eff1-46b9-ada8-423cb1cdb118	g.chr16:28507398_28507424delGGGACAGCCTCAGGAGGGGAGGAGGCC	uc002dqb.1	+	2	1053	c.1043_splice	c.e2+1	p.A348_splice	uc010vct.1_Intron|APOB48R_uc010byg.1_5'UTR	NM_018690	NP_061160	Q0VD83	APOBR_HUMAN	apolipoprotein B48 receptor						cholesterol metabolic process|lipid transport	chylomicron|low-density lipoprotein particle|plasma membrane|very-low-density lipoprotein particle					0						CGGGGAGGCTGGGACAGCCTCAGGAGGGGAGGAGGCCGGGACAGCCT	0.705													5	8	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	33531101	33531102	+	IGR	INS	-	A	A			TCGA-BJ-A192-01A-31D-A13W-08	TCGA-BJ-A192-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d79a268-fa99-488e-ac9a-24e7adef76bc	05f2dae1-eff1-46b9-ada8-423cb1cdb118	g.chr16:33531101_33531102insA								SLC6A10P (634638 upstream) : MIR1826 (434406 downstream)																							GCAGCATGTGCAAAAAAATAAA	0.391													5	1	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	34180389	34180389	+	IGR	DEL	T	-	-			TCGA-BJ-A192-01A-31D-A13W-08	TCGA-BJ-A192-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d79a268-fa99-488e-ac9a-24e7adef76bc	05f2dae1-eff1-46b9-ada8-423cb1cdb118	g.chr16:34180389delT								MIR1826 (214797 upstream) : UBE2MP1 (223413 downstream)																							ccctttgtcattttgaaatgt	0.070													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	46403697	46403698	+	IGR	INS	-	G	G	rs142975115		TCGA-BJ-A192-01A-31D-A13W-08	TCGA-BJ-A192-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d79a268-fa99-488e-ac9a-24e7adef76bc	05f2dae1-eff1-46b9-ada8-423cb1cdb118	g.chr16:46403697_46403698insG								None (None upstream) : ANKRD26P1 (99551 downstream)																							tttcattcgatgatgattccat	0.000													14	1550	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	51988491	51988491	+	IGR	DEL	C	-	-			TCGA-BJ-A192-01A-31D-A13W-08	TCGA-BJ-A192-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d79a268-fa99-488e-ac9a-24e7adef76bc	05f2dae1-eff1-46b9-ada8-423cb1cdb118	g.chr16:51988491delC								SALL1 (803308 upstream) : TOX3 (483427 downstream)																							cttcctccctccccccgactc	0.060													2	4	---	---	---	---					
MC5R	4161	broad.mit.edu	37	18	13825564	13825564	+	5'Flank	DEL	A	-	-	rs33981843		TCGA-BJ-A192-01A-31D-A13W-08	TCGA-BJ-A192-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d79a268-fa99-488e-ac9a-24e7adef76bc	05f2dae1-eff1-46b9-ada8-423cb1cdb118	g.chr18:13825564delA	uc010xaf.1	+							NM_005913	NP_005904	P33032	MC5R_HUMAN	melanocortin 5 receptor						G-protein signaling, coupled to cyclic nucleotide second messenger|positive regulation of cAMP biosynthetic process	integral to plasma membrane	melanocortin receptor activity|protein binding			ovary(3)|lung(2)|breast(1)	6						cctgtctcttaaaaaaaaaaa	0.224													4	9	---	---	---	---					
Unknown	0	broad.mit.edu	37	18	18517211	18517211	+	IGR	DEL	C	-	-			TCGA-BJ-A192-01A-31D-A13W-08	TCGA-BJ-A192-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d79a268-fa99-488e-ac9a-24e7adef76bc	05f2dae1-eff1-46b9-ada8-423cb1cdb118	g.chr18:18517211delC								None (None upstream) : ROCK1 (12494 downstream)																							gaaatgtcttcccataaaaac	0.000													9	720	---	---	---	---					
Unknown	0	broad.mit.edu	37	19	27738432	27738435	+	IGR	DEL	TGTT	-	-			TCGA-BJ-A192-01A-31D-A13W-08	TCGA-BJ-A192-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d79a268-fa99-488e-ac9a-24e7adef76bc	05f2dae1-eff1-46b9-ada8-423cb1cdb118	g.chr19:27738432_27738435delTGTT								None (None upstream) : LOC148189 (542967 downstream)																							ggaaacactctgtttgtaaagtct	0.000													8	786	---	---	---	---					
Unknown	0	broad.mit.edu	37	19	44917435	44917436	+	IGR	INS	-	TCCG	TCCG			TCGA-BJ-A192-01A-31D-A13W-08	TCGA-BJ-A192-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d79a268-fa99-488e-ac9a-24e7adef76bc	05f2dae1-eff1-46b9-ada8-423cb1cdb118	g.chr19:44917435_44917436insTCCG								ZFP112 (11658 upstream) : ZNF229 (12990 downstream)																							TTCtccttccttctttccttcc	0.178													5	7	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	64602783	64602785	+	IGR	DEL	CAT	-	-			TCGA-BJ-A192-01A-31D-A13W-08	TCGA-BJ-A192-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d79a268-fa99-488e-ac9a-24e7adef76bc	05f2dae1-eff1-46b9-ada8-423cb1cdb118	g.chr2:64602783_64602785delCAT								PELI1 (231178 upstream) : HSPC159 (78542 downstream)																							ccaccatcaccatcaccatcacc	0.059													3	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	92307360	92307360	+	IGR	DEL	T	-	-			TCGA-BJ-A192-01A-31D-A13W-08	TCGA-BJ-A192-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d79a268-fa99-488e-ac9a-24e7adef76bc	05f2dae1-eff1-46b9-ada8-423cb1cdb118	g.chr2:92307360delT								FKSG73 (176866 upstream) : None (None downstream)																							gagttgaacctttcttttgag	0.000													8	48	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	128825103	128825103	+	IGR	DEL	A	-	-			TCGA-BJ-A192-01A-31D-A13W-08	TCGA-BJ-A192-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d79a268-fa99-488e-ac9a-24e7adef76bc	05f2dae1-eff1-46b9-ada8-423cb1cdb118	g.chr2:128825103delA								SAP130 (39470 upstream) : UGGT1 (23651 downstream)																							tgtctctatgaaaaaaaaaaa	0.000													5	2	---	---	---	---					
Unknown	0	broad.mit.edu	37	20	29589297	29589297	+	IGR	DEL	C	-	-	rs73620372		TCGA-BJ-A192-01A-31D-A13W-08	TCGA-BJ-A192-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d79a268-fa99-488e-ac9a-24e7adef76bc	05f2dae1-eff1-46b9-ada8-423cb1cdb118	g.chr20:29589297delC								None (None upstream) : FRG1B (22582 downstream)																							cttagcacttcttttgctgca	0.000													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	21	10759280	10759280	+	IGR	DEL	A	-	-	rs113315544		TCGA-BJ-A192-01A-31D-A13W-08	TCGA-BJ-A192-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d79a268-fa99-488e-ac9a-24e7adef76bc	05f2dae1-eff1-46b9-ada8-423cb1cdb118	g.chr21:10759280delA								None (None upstream) : TPTE (147463 downstream)																							tctagtttttatgtgaagata	0.000													4	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	21	14353155	14353155	+	IGR	DEL	A	-	-			TCGA-BJ-A192-01A-31D-A13W-08	TCGA-BJ-A192-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d79a268-fa99-488e-ac9a-24e7adef76bc	05f2dae1-eff1-46b9-ada8-423cb1cdb118	g.chr21:14353155delA								None (None upstream) : C21orf99 (57332 downstream)																							tgcacacctcacaaagaagtt	0.000													3	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	21	14359175	14359176	+	IGR	INS	-	A	A	rs141962224		TCGA-BJ-A192-01A-31D-A13W-08	TCGA-BJ-A192-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d79a268-fa99-488e-ac9a-24e7adef76bc	05f2dae1-eff1-46b9-ada8-423cb1cdb118	g.chr21:14359175_14359176insA								None (None upstream) : C21orf99 (51311 downstream)																							gaagatatttcttttttctacc	0.000													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	22	51082131	51082132	+	IGR	INS	-	CTTA	CTTA			TCGA-BJ-A192-01A-31D-A13W-08	TCGA-BJ-A192-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d79a268-fa99-488e-ac9a-24e7adef76bc	05f2dae1-eff1-46b9-ada8-423cb1cdb118	g.chr22:51082131_51082132insCTTA								ARSA (15524 upstream) : SHANK3 (30938 downstream)																							tctgcactgatcttaggagcag	0.000													3	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	4	49121582	49121582	+	IGR	DEL	C	-	-			TCGA-BJ-A192-01A-31D-A13W-08	TCGA-BJ-A192-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d79a268-fa99-488e-ac9a-24e7adef76bc	05f2dae1-eff1-46b9-ada8-423cb1cdb118	g.chr4:49121582delC								CWH43 (57489 upstream) : None (None downstream)																							gcattccattccattccactc	0.000													7	56	---	---	---	---					
Unknown	0	broad.mit.edu	37	5	179513202	179513203	+	IGR	INS	-	T	T	rs111702325		TCGA-BJ-A192-01A-31D-A13W-08	TCGA-BJ-A192-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d79a268-fa99-488e-ac9a-24e7adef76bc	05f2dae1-eff1-46b9-ada8-423cb1cdb118	g.chr5:179513202_179513203insT								RNF130 (14093 upstream) : RASGEF1C (14593 downstream)																							CAAGAGATTAGttttttttttt	0.213													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	7	57929339	57929342	+	IGR	DEL	TTTG	-	-			TCGA-BJ-A192-01A-31D-A13W-08	TCGA-BJ-A192-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d79a268-fa99-488e-ac9a-24e7adef76bc	05f2dae1-eff1-46b9-ada8-423cb1cdb118	g.chr7:57929339_57929342delTTTG								ZNF716 (396074 upstream) : None (None downstream)																							CACATTCTGATTTGTTTTTTGTAT	0.363													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	7	150606852	150606852	+	IGR	DEL	G	-	-	rs111683956		TCGA-BJ-A192-01A-31D-A13W-08	TCGA-BJ-A192-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d79a268-fa99-488e-ac9a-24e7adef76bc	05f2dae1-eff1-46b9-ada8-423cb1cdb118	g.chr7:150606852delG								ABP1 (48473 upstream) : KCNH2 (35198 downstream)																							gtgtgtgtgtggtgtgtggtg	0.000													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	9	36305032	36305034	+	IGR	DEL	TTT	-	-			TCGA-BJ-A192-01A-31D-A13W-08	TCGA-BJ-A192-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d79a268-fa99-488e-ac9a-24e7adef76bc	05f2dae1-eff1-46b9-ada8-423cb1cdb118	g.chr9:36305032_36305034delTTT								CLTA (254 upstream) : RNF38 (31367 downstream)																							GCCTGGCTAAttttttttttttt	0.300													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	M	13133	13133	+	RNA	DEL	T	-	-			TCGA-BJ-A192-01A-31D-A13W-08	TCGA-BJ-A192-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d79a268-fa99-488e-ac9a-24e7adef76bc	05f2dae1-eff1-46b9-ada8-423cb1cdb118	g.chrM:13133delT	uc004cox.3	+	1		c.797delT			uc004coy.2_5'Flank|uc004coz.1_5'Flank					Homo sapiens NADH dehydrogenase subunit 5 (MTND5) mRNA, RNA 5, complete cds; mitochondrial gene for mitochondrial product.																		CTTCCACCCCCTAGCAGAAAA	0.502													18	1024	---	---	---	---					
Unknown	0	broad.mit.edu	37	X	3442803	3442805	+	IGR	DEL	CAT	-	-			TCGA-BJ-A192-01A-31D-A13W-08	TCGA-BJ-A192-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d79a268-fa99-488e-ac9a-24e7adef76bc	05f2dae1-eff1-46b9-ada8-423cb1cdb118	g.chrX:3442803_3442805delCAT								MXRA5 (178119 upstream) : PRKX (79608 downstream)																							ccaccaccaccatcaccatcacc	0.000													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	X	61687743	61687744	+	IGR	INS	-	A	A			TCGA-BJ-A192-01A-31D-A13W-08	TCGA-BJ-A192-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d79a268-fa99-488e-ac9a-24e7adef76bc	05f2dae1-eff1-46b9-ada8-423cb1cdb118	g.chrX:61687743_61687744insA								None (None upstream) : SPIN4 (879364 downstream)																							agtgtatttggaaactgctcca	0.000													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	X	152655324	152655332	+	IGR	DEL	CACACACAC	-	-			TCGA-BJ-A192-01A-31D-A13W-08	TCGA-BJ-A192-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d79a268-fa99-488e-ac9a-24e7adef76bc	05f2dae1-eff1-46b9-ada8-423cb1cdb118	g.chrX:152655324_152655332delCACACACAC								ZNF275 (36941 upstream) : ZFP92 (28449 downstream)																							atgcacaccacacacacaccacacacacc	0.000													4	7	---	---	---	---					
Unknown	0	broad.mit.edu	37	Y	59021805	59021806	+	IGR	DEL	TA	-	-	rs150313998		TCGA-BJ-A192-01A-31D-A13W-08	TCGA-BJ-A192-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	8d79a268-fa99-488e-ac9a-24e7adef76bc	05f2dae1-eff1-46b9-ada8-423cb1cdb118	g.chrY:59021805_59021806delTA								None (None upstream) : None (None downstream)																							gactgaaaactatgagcaaaat	0.104													3	4	---	---	---	---					
